Joint Open Genome and Omics Platform (JoGo)

Search by Variant

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Chr

Chromosome name (e.g., chr11).

Snpeff genename

Exact SnpEff gene name.

Sampleids

Target sampleid (e.g. HG02615).

Snpeff haplotype class

Haplotype-annotation class (e.g., ahapid, ahapid+chapid).

Snpeff annotation impact

Exact impact level (e.g., HIGH, MODERATE, LOW).

Snpeff annotation impact detail

Keyword match in SnpEff annotation.

Hapid

One or more haplotype IDs (comma-separated; e.g., a0001, a01, a0001c0001, a01c02, a1c2, a0001c0001t0005, a0001c0001t0005g0018).

Samplehapid

Sample haplotype IDs to include (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

No_hapid

Haplotype IDs to exclude (comma-separated; e.g., a0001, a0002, a0001c0001, a0001c0001t0005, a1, a01).

No_samplehapid

Sample haplotype IDs to exclude (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

Start

Start position (GRCh38).

End

End position (GRCh38).

Minac

Minimum alternate allele count (≥).

Maxac

Maximum alternate allele count (≤).

Minlen

Minimum variant length (≥).

Maxlen

Maximum variant length (≤).

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regionname	pos	ref	alt	annotation	impact	samples	ahapids	achapids	acthapids	actghapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	external
SLC44A1_chr9_105239651_105402346	105387060	A A	AAAAAAAA others(22): Show AAAAAAAAAAAAAAATATATATATATATAT	intron_variant intron_variant	MODIFIER	NA20752.hp2 NA20752.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0007 a0001c0001t0007	a0001c0001t0007g0066 a0001c0001t0007g0066	1	142	0.0070	29	c.195 others(48): Show c.1950+1559_1950+1560insAAAAAAAAAAAAATATATATATATAT ATA	SLC44A1	ENSG00000070214.17	transcript	ENST00000374720.8	protein_coding	15/15		INFO_REALIGN_3_PRIME	chr9	TogoVar
SLC44A1_chr9_105239651_105402346	105387060	A A	AAAAAAAA others(22): Show AAAAAAAAAAAAATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG01081.hp2 HG01081.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0007 a0001c0001t0007	a0001c0001t0007g0067 a0001c0001t0007g0067	1	142	0.0070	29	c.195 others(48): Show c.1950+1559_1950+1560insAAAAAAAAAAATATATATATATATAT ATA	SLC44A1	ENSG00000070214.17	transcript	ENST00000374720.8	protein_coding	15/15		INFO_REALIGN_3_PRIME	chr9	TogoVar
SLC44A1_chr9_105239651_105402346	105387060	A A	AAAAAAAA others(22): Show AAAAAAAAATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	NA19043.hp1 NA19043.hp1	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0045 a0002c0002t0045	a0002c0002t0045g0031 a0002c0002t0045g0031	1	142	0.0070	29	c.195 others(48): Show c.1950+1559_1950+1560insAAAAAAATATATATATATATATATAT ATA	SLC44A1	ENSG00000070214.17	transcript	ENST00000374720.8	protein_coding	15/15		INFO_REALIGN_3_PRIME	chr9	TogoVar
SLC44A1_chr9_105239651_105402346	105387060	A A	AAAAAAAT others(22): Show AAAAAAATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG04199.hp1 HG04199.hp1	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0083 a0002c0002t0083	a0002c0002t0083g0114 a0002c0002t0083g0114	1	142	0.0070	29	c.195 others(48): Show c.1950+1559_1950+1560insAAAAATATATATATATATATATATAT ATA	SLC44A1	ENSG00000070214.17	transcript	ENST00000374720.8	protein_coding	15/15		INFO_REALIGN_3_PRIME	chr9	TogoVar
SLC44A5_chr1_75197129_75616114	75280241	A A	AATATATA others(22): Show AATATATATATTGTATATATTATATATTGT	intron_variant intron_variant	MODIFIER	HG01516.hp2 HG01516.hp2	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0001 a0001c0003t0001	a0001c0003t0001g0061 a0001c0003t0001g0061	1	156	0.0064	29	c.176 others(46): Show c.176-5200_176-5199insACAATATATAATATATACAATATATATA T	SLC44A5	ENSG00000137968.17	transcript	ENST00000370859.8	protein_coding	5/23			chr1	TogoVar
SLC46A3_chr13_28695080_28723970	28717484	A A	AATTTTTT others(22): Show AATTTTTTTTTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG00735.hp2 HG01071.hp1 HG02622.hp1 HG00735.hp2 HG01071.hp1 HG02622.hp1	a0001 a0009 a0001 a0009	a0001c0001 a0009c0011 a0001c0001 a0009c0011	a0001c0001t0004 a0009c0011t0004 a0001c0001t0004 a0009c0011t0004	a0001c0001t0004g0179 a0001c0001t0004g0180 a0009c0011t0004g0178 a0001c0001t0004g0179 a0001c0001t0004g0180 a0009c0011t0004g0178	3	426	0.0070	29	c.189 others(44): Show c.189+325_189+326insAAAAAAAAAAAAAAAAAAAAAAAAAAAAT	SLC46A3	ENSG00000139508.15	transcript	ENST00000266943.11	protein_coding	2/5			chr13	TogoVar
SLC4A10_chr2_161619416_161990270	161660661	C C	CTTCTTTC others(22): Show CTTCTTTCCTTCTTTCTTTCTTTCTTTCTT	intron_variant intron_variant	MODIFIER	HG02257.hp1 HG02572.hp2 HG02818.hp1 HG02257.hp1 HG02572.hp2 HG02818.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0038 a0001c0001t0001g0051 a0001c0001t0001g0055 a0001c0001t0001g0038 a0001c0001t0001g0051 a0001c0001t0001g0055	3	118	0.0254	29	c.48+ others(46): Show c.48+36097_48+36098insCTTTCCTTCTTTCTTTCTTTCTTTCTTT T	SLC4A10	ENSG00000144290.17	transcript	ENST00000446997.6	protein_coding	1/26		INFO_REALIGN_3_PRIME	chr2	TogoVar
SLC4A11_chr20_3222422_3244190	3223976	T T	TGTGAGCT others(22): Show TGTGAGCTGGAGTGTTACGTCTCCACTCGA	downstream_gene_variant downstream_gene_variant	MODIFIER	NA18942.hp2 NA18942.hp2	a0001 a0001	a0001c0004 a0001c0004	a0001c0004t0001 a0001c0004t0001	a0001c0004t0001g0022 a0001c0004t0001g0022	1	446	0.0022	29	c.38 others(40): Show c.3810_*3811insTCGAGTGGAGACGTAACACTCCAGCTCAC	SLC4A11	ENSG00000088836.14	transcript	ENST00000642402.1	protein_coding		3445		chr20	TogoVar
SLC5A11_chr16_24840963_24916626	24849593	A A	AAAAAAAA others(22): Show AAAAAAAAAAAAATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG03492.hp1 HG03492.hp1	a0002 a0002	a0002c0003 a0002c0003	a0002c0003t0001 a0002c0003t0001	a0002c0003t0001g0209 a0002c0003t0001g0209	1	378	0.0027	29	c.-25 others(46): Show c.-25+3156_-25+3157insAAAAAAAAAAATATATATATATATATAT A	SLC5A11	ENSG00000158865.13	transcript	ENST00000424767.7	protein_coding	2/16		INFO_REALIGN_3_PRIME	chr16	TogoVar
SLC5A1_chr22_32038261_32118029	32099103	A A	ATATATAT others(22): Show ATATATATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG01106.hp1 HG01106.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0133 a0001c0001t0001g0133	1	252	0.0040	29	c.128 others(44): Show c.1281-80_1281-79insTATATATATATATATATATATATATATAT	SLC5A1	ENSG00000100170.10	transcript	ENST00000266088.9	protein_coding	11/14			chr22	TogoVar
SLC5A4_chr22_32213464_32260347	32239552	A A	ATATATAT others(22): Show ATATATATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG01099.hp2 HG01099.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0162 a0001c0001t0001g0162	1	302	0.0033	29	c.478 others(44): Show c.478-463_478-462insATATATATATATATATATATATATATATA	SLC5A4	ENSG00000100191.6	transcript	ENST00000266086.6	protein_coding	5/14			chr22	TogoVar
SLC66A2_chr18_79897420_79956653	79918445	G G	GGGCACCG others(22): Show GGGCACCGGGGAGGGTCCCCAGTGAGGAGC	intron_variant intron_variant	MODIFIER	NA19030.hp1 NA19030.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0010 a0001c0001t0010	a0001c0001t0010g0165 a0001c0001t0010g0165	1	352	0.0028	29	c.608 others(44): Show c.608+710_608+738dupGCTCCTCACTGGGGACCCTCCCCGGTGCC	SLC66A2	ENSG00000122490.19	transcript	ENST00000397778.7	protein_coding	5/5			chr18	TogoVar
SLC66A3_chr2_11150467_11183856	11155285	G G	GGGGGCGG others(22): Show GGGGGCGGGGCGGGCCCGGGCGGGAGGGGC	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00639.hp1 HG02080.hp1 HG02109.hp1 others(12): Show HG00639.hp1 HG02080.hp1 HG02109.hp1 HG02257.hp1 HG02257.hp2 HG02818.hp2 HG02965.hp1 HG03041.hp2 HG03225.hp1 HG03453.hp2 HG03471.hp2 NA19030.hp1 NA19030.hp2 NA19043.hp2 NA20129.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0007 a0001c0001t0008 others(1): Show a0001c0001t0003 a0001c0001t0007 a0001c0001t0008 a0001c0001t0009	a0001c0001t0003g0011 a0001c0001t0003g0333 a0001c0001t0003g0334 others(10): Show a0001c0001t0003g0011 a0001c0001t0003g0333 a0001c0001t0003g0334 a0001c0001t0003g0335 a0001c0001t0003g0336 a0001c0001t0003g0337 a0001c0001t0003g0338 a0001c0001t0003g0339 a0001c0001t0007g0259 a0001c0001t0007g0260 a0001c0001t0007g0261 a0001c0001t0008g0021 a0001c0001t0009g0332	15	404	0.0371	29	c.-26 others(38): Show c.-262_-261insGGGGCGGGGCGGGCCCGGGCGGGAGGGGC	SLC66A3	ENSG00000162976.13	transcript	ENST00000295083.8	protein_coding		181		chr2	TogoVar
SLC66A3_chr2_11150467_11183856	11164345	A A	ATATATAT others(22): Show ATATATATATATATATTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG01255.hp2 HG01255.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0079 a0001c0001t0001g0079	1	404	0.0025	29	c.354 others(42): Show c.354+85_354+86insATATATATATATATTTTTTTTTTTTTTTT	SLC66A3	ENSG00000162976.13	transcript	ENST00000295083.8	protein_coding	4/6		INFO_REALIGN_3_PRIME	chr2	TogoVar
SLC66A3_chr2_11150467_11183856	11164345	A A	ATATATAT others(22): Show ATATATATATATATTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG00558.hp1 HG01123.hp2 HG01952.hp1 others(1): Show HG00558.hp1 HG01123.hp2 HG01952.hp1 HG01952.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0005 a0001c0001t0001 a0001c0001t0005	a0001c0001t0001g0091 a0001c0001t0001g0092 a0001c0001t0001g0093 others(1): Show a0001c0001t0001g0091 a0001c0001t0001g0092 a0001c0001t0001g0093 a0001c0001t0005g0094	4	404	0.0099	29	c.354 others(42): Show c.354+85_354+86insATATATATATATTTTTTTTTTTTTTTTTT	SLC66A3	ENSG00000162976.13	transcript	ENST00000295083.8	protein_coding	4/6		INFO_REALIGN_3_PRIME	chr2	TogoVar
SLC66A3_chr2_11150467_11183856	11164345	A A	ATATATAT others(22): Show ATATATATATATTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG00735.hp2 HG01928.hp1 HG02004.hp2 others(7): Show HG00735.hp2 HG01928.hp1 HG02004.hp2 HG02148.hp1 HG02148.hp2 HG02273.hp2 HG02293.hp2 NA18970.hp1 NA18987.hp2 NA19068.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0005 a0001c0001t0008 a0001c0001t0002 a0001c0001t0005 a0001c0001t0008	a0001c0001t0002g0049 a0001c0001t0002g0076 a0001c0001t0002g0103 others(7): Show a0001c0001t0002g0049 a0001c0001t0002g0076 a0001c0001t0002g0103 a0001c0001t0002g0104 a0001c0001t0002g0105 a0001c0001t0002g0130 a0001c0001t0005g0272 a0001c0001t0005g0273 a0001c0001t0008g0056 a0001c0001t0008g0318	10	404	0.0248	29	c.354 others(42): Show c.354+85_354+86insATATATATATTTTTTTTTTTTTTTTTTTT	SLC66A3	ENSG00000162976.13	transcript	ENST00000295083.8	protein_coding	4/6		INFO_REALIGN_3_PRIME	chr2	TogoVar
SLC66A3_chr2_11150467_11183856	11164345	A A	ATATATAT others(22): Show ATATATATATTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	NA18966.hp1 NA18998.hp2 NA18966.hp1 NA18998.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0001 a0001c0001t0002	a0001c0001t0001g0122 a0001c0001t0002g0121 a0001c0001t0001g0122 a0001c0001t0002g0121	2	404	0.0050	29	c.354 others(42): Show c.354+85_354+86insATATATATTTTTTTTTTTTTTTTTTTTTT	SLC66A3	ENSG00000162976.13	transcript	ENST00000295083.8	protein_coding	4/6		INFO_REALIGN_3_PRIME	chr2	TogoVar
SLC6A12_chr12_185081_219157	187589	C C	CAAAAGAG others(22): Show CAAAAGAGCAAAAGAGCAAAAAAAAAAAAA	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01891.hp2 HG01891.hp2	a0002 a0002	a0002c0005 a0002c0005	a0002c0005t0002 a0002c0005t0002	a0002c0005t0002g0356 a0002c0005t0002g0356	1	420	0.0024	29	c.34 others(40): Show c.3478_*3479insTTTTTTTTTTTTTGCTCTTTTGCTCTTTT	SLC6A12	ENSG00000111181.13	transcript	ENST00000684302.1	protein_coding		2491		chr12	TogoVar
SLC6A14_chrX_116431606_116466458	116462820	A A	AATGTGTA others(22): Show AATGTGTAGACTAGGGTAAAAGGGGGGGGG	downstream_gene_variant downstream_gene_variant	MODIFIER	NA18988.hp1 NA18988.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0007 a0001c0001t0001g0007	1	308	0.0033	29	c.38 others(40): Show c.3865_*3866insATGTGTAGACTAGGGTAAAAGGGGGGGGG	SLC6A14	ENSG00000268104.3	transcript	ENST00000598581.3	protein_coding		1363		chrX	TogoVar
SLC6A17_chr1_110145494_110207202	110145805	C C	CAGCCCCT others(22): Show CAGCCCCTTCCTGTGGCTTCAGGCCCACCT	upstream_gene_variant upstream_gene_variant	MODIFIER	NA18994.hp2 NA18994.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0008 a0001c0001t0001g0008	1	328	0.0031	29	c.-51 others(40): Show c.-5166_-5165insAGCCCCTTCCTGTGGCTTCAGGCCCACCT	SLC6A17	ENSG00000197106.7	transcript	ENST00000331565.5	protein_coding		4688		chr1	TogoVar
SLC6A1_chr3_10987748_11044247	11029991	A A	AGAAAGAA others(22): Show AGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	intron_variant intron_variant	MODIFIER	HG00140.hp1 HG02015.hp2 HG02135.hp1 others(2): Show HG00140.hp1 HG02015.hp2 HG02135.hp1 HG02165.hp1 NA20752.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0002 a0001c0001t0008 a0001c0001t0010 others(1): Show a0001c0001t0002 a0001c0001t0008 a0001c0001t0010 a0001c0002t0003	a0001c0001t0002g0181 a0001c0001t0002g0221 a0001c0001t0008g0182 others(2): Show a0001c0001t0002g0181 a0001c0001t0002g0221 a0001c0001t0008g0182 a0001c0001t0010g0072 a0001c0002t0003g0250	5	438	0.0114	29	c.132 others(46): Show c.1323+639_1323+640insGAAAGAAAGAAAGAAAGAAAGAAAGAAA G	SLC6A1	ENSG00000157103.13	transcript	ENST00000287766.10	protein_coding	12/15			chr3	TogoVar
SLC7A11_chr4_138159097_138247349	138237737	A A	ATATATAT others(22): Show ATATATATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG01934.hp1 HG01934.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0020 a0001c0001t0020	a0001c0001t0020g0047 a0001c0001t0020g0047	1	364	0.0028	29	c.278 others(46): Show c.278-1287_278-1286insATATATATATATATATATATATATATAT A	SLC7A11	ENSG00000151012.13	transcript	ENST00000280612.9	protein_coding	1/11			chr4	TogoVar
SLC7A11_chr4_138159097_138247349	138237737	A A	ATATATAT others(22): Show ATATATATATATATATATATATATATATTT	intron_variant intron_variant	MODIFIER	HG02132.hp2 HG02132.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0006 a0001c0001t0006	a0001c0001t0006g0035 a0001c0001t0006g0035	1	364	0.0028	29	c.278 others(46): Show c.278-1287_278-1286insAAATATATATATATATATATATATATAT A	SLC7A11	ENSG00000151012.13	transcript	ENST00000280612.9	protein_coding	1/11			chr4	TogoVar
SLC7A11_chr4_138159097_138247349	138237737	A A	ATATATAT others(22): Show ATATATATATATATATATATATATATTTTT	intron_variant intron_variant	MODIFIER	HG03669.hp2 HG03669.hp2	a0002 a0002	a0002c0004 a0002c0004	a0002c0004t0076 a0002c0004t0076	a0002c0004t0076g0022 a0002c0004t0076g0022	1	364	0.0028	29	c.278 others(46): Show c.278-1287_278-1286insAAAAATATATATATATATATATATATAT A	SLC7A11	ENSG00000151012.13	transcript	ENST00000280612.9	protein_coding	1/11			chr4	TogoVar
SLC7A11_chr4_138159097_138247349	138237737	A A	ATATATAT others(22): Show ATATATATATATATATATATATATTTTTTT	intron_variant intron_variant	MODIFIER	HG01981.hp2 HG01981.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0067 a0001c0001t0067	a0001c0001t0067g0014 a0001c0001t0067g0014	1	364	0.0028	29	c.278 others(46): Show c.278-1287_278-1286insAAAAAAATATATATATATATATATATAT A	SLC7A11	ENSG00000151012.13	transcript	ENST00000280612.9	protein_coding	1/11			chr4	TogoVar
SLC7A1_chr13_29504414_29600688	29555357	C C	CAAAAAAA others(22): Show CAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG02698.hp2 HG02698.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0236 a0001c0001t0001g0236	1	330	0.0030	29	c.-11 others(48): Show c.-114-1498_-114-1497insTTTTTTTTTTTTTTTTTTTTTTTTTT TTT	SLC7A1	ENSG00000139514.13	transcript	ENST00000380752.10	protein_coding	1/12			chr13	TogoVar
SLC7A1_chr13_29504414_29600688	29576292	T T	TAAAAAAA others(22): Show TAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG01884.hp1 HG02109.hp1 HG02630.hp1 others(6): Show HG01884.hp1 HG02109.hp1 HG02630.hp1 HG02895.hp1 HG02896.hp1 HG02976.hp2 HG03130.hp2 HG03453.hp1 HG03486.hp1	a0001 a0001	a0001c0004 a0001c0010 a0001c0012 a0001c0004 a0001c0010 a0001c0012	a0001c0004t0006 a0001c0004t0011 a0001c0010t0023 others(1): Show a0001c0004t0006 a0001c0004t0011 a0001c0010t0023 a0001c0012t0032	a0001c0004t0006g0089 a0001c0004t0006g0219 a0001c0004t0011g0090 others(6): Show a0001c0004t0006g0089 a0001c0004t0006g0219 a0001c0004t0011g0090 a0001c0004t0011g0091 a0001c0004t0011g0092 a0001c0004t0011g0093 a0001c0004t0011g0094 a0001c0010t0023g0050 a0001c0012t0032g0057	9	330	0.0273	29	c.-11 others(50): Show c.-115+19123_-115+19124insTTTTTTTTTTTTTTTTTTTTTTTT TTTTT	SLC7A1	ENSG00000139514.13	transcript	ENST00000380752.10	protein_coding	1/12			chr13	TogoVar
SLC8A1_chr2_40092270_40457090	40248994	A A	ATTCATTG others(22): Show ATTCATTGAGAACAGGATGACGTGCTGAGT	intron_variant intron_variant	MODIFIER	HG03540.hp1 HG03540.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0082 a0001c0001t0082	a0001c0001t0082g0050 a0001c0001t0082g0050	1	236	0.0042	29	c.180 others(50): Show c.1809-70530_1809-70502dupACTCAGCACGTCATCCTGTTCTCA ATGAA	SLC8A1	ENSG00000183023.19	transcript	ENST00000332839.9	protein_coding	2/10			chr2	TogoVar
SLC8A3_chr14_70039215_70193951	70109287	C C	CTATATAT others(22): Show CTATATATATATATGTATATATATACACAT	intron_variant intron_variant	MODIFIER	HG00280.hp1 HG00280.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0154 a0001c0001t0002g0154	1	296	0.0034	29	c.178 others(50): Show c.1785-48377_1785-48349dupATGTGTATATATATACATATATAT ATATA	SLC8A3	ENSG00000100678.20	transcript	ENST00000356921.7	protein_coding	2/6			chr14	TogoVar
SLC8A3_chr14_70039215_70193951	70192043	T T	TATTAATT others(22): Show TATTAATTATTATTAATAATAATAATAATA	upstream_gene_variant upstream_gene_variant	MODIFIER	HG03942.hp1 HG03942.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0005 a0001c0001t0005	a0001c0001t0005g0031 a0001c0001t0005g0031	1	296	0.0034	29	c.-37 others(40): Show c.-3728_-3727insTATTATTATTATTATTAATAATAATTAAT	SLC8A3	ENSG00000100678.20	transcript	ENST00000356921.7	protein_coding		3093		chr14	TogoVar
SLC8A3_chr14_70039215_70193951	70192046	T T	TAATTATT others(22): Show TAATTATTATTATTAATAATAATAATAATA	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02258.hp1 HG02258.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0003 a0001c0002t0003	a0001c0002t0003g0260 a0001c0002t0003g0260	1	296	0.0034	29	c.-37 others(40): Show c.-3731_-3730insTATTATTATTATTATTAATAATAATAATT	SLC8A3	ENSG00000100678.20	transcript	ENST00000356921.7	protein_coding		3096		chr14	TogoVar
SLC9A1_chr1_27093809_27160125	27131947	A A	AAAAAAAA others(22): Show AAAAAAAAAAAAAAAAAAATATATATATAT	intron_variant intron_variant	MODIFIER	HG02895.hp1 HG02895.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0002 a0001c0002t0002	a0001c0002t0002g0067 a0001c0002t0002g0067	1	234	0.0043	29	c.353 others(48): Show c.353-17662_353-17661insATATATATATATTTTTTTTTTTTTTT TTT	SLC9A1	ENSG00000090020.11	transcript	ENST00000263980.8	protein_coding	1/11			chr1	TogoVar
SLC9A3_chr5_465456_529449	507166	C C	CTTTTTTT others(22): Show CTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG01993.hp2 HG02257.hp2 HG02622.hp1 others(2): Show HG01993.hp2 HG02257.hp2 HG02622.hp1 NA18522.hp1 NA20300.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0002c0002 a0001c0001 a0002c0002	a0001c0001t0001 a0002c0002t0002 a0001c0001t0001 a0002c0002t0002	a0001c0001t0001g0022 a0001c0001t0001g0024 a0001c0001t0001g0025 others(2): Show a0001c0001t0001g0022 a0001c0001t0001g0024 a0001c0001t0001g0025 a0001c0001t0001g0026 a0002c0002t0002g0098	5	218	0.0229	29	c.212 others(48): Show c.212-15096_212-15095insAAAAAAAAAAAAAAAAAAAAAAAAAA AAA	SLC9A3	ENSG00000066230.12	transcript	ENST00000264938.8	protein_coding	1/16			chr5	TogoVar
SLC9A5_chr16_67243979_67277191	67273269	A A	AATATTAT others(22): Show AATATTATATAATTATATATTATATAATAT	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01109.hp2 HG02055.hp1 HG02109.hp2 others(16): Show HG01109.hp2 HG02055.hp1 HG02109.hp2 HG02145.hp2 HG02280.hp1 HG02280.hp2 HG02615.hp2 HG02622.hp2 HG02630.hp1 HG02818.hp1 HG02886.hp1 HG02896.hp2 HG02922.hp1 HG03041.hp1 HG03225.hp1 HG03453.hp2 NA18522.hp2 NA19240.hp1 NA20300.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0002 a0001c0002t0002	a0001c0002t0002g0025 a0001c0002t0002g0027 a0001c0002t0002g0028 others(16): Show a0001c0002t0002g0025 a0001c0002t0002g0027 a0001c0002t0002g0028 a0001c0002t0002g0029 a0001c0002t0002g0030 a0001c0002t0002g0031 a0001c0002t0002g0032 a0001c0002t0002g0033 a0001c0002t0002g0034 a0001c0002t0002g0035 a0001c0002t0002g0036 a0001c0002t0002g0037 a0001c0002t0002g0038 a0001c0002t0002g0041 a0001c0002t0002g0049 a0001c0002t0002g0050 a0001c0002t0002g0051 a0001c0002t0002g0052 a0001c0002t0002g0054	19	204	0.0931	29	c.20 others(40): Show c.2059_*2060insATATTATATAATTATATATTATATAATAT	SLC9A5	ENSG00000135740.17	transcript	ENST00000299798.16	protein_coding		1079		chr16	TogoVar
SLC9A8_chr20_49807828_49897242	49884274	G G	GACACACA others(22): Show GACACACACACACGACACACACACACACAC	intron_variant intron_variant	MODIFIER	HG02922.hp2 HG02922.hp2	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0001 a0001c0003t0001	a0001c0003t0001g0164 a0001c0003t0001g0164	1	360	0.0028	29	c.149 others(46): Show c.1491+220_1491+221insGACACACACACACACACACACACACACA C	SLC9A8	ENSG00000197818.12	transcript	ENST00000361573.3	protein_coding	14/15		INFO_REALIGN_3_PRIME	chr20	TogoVar
SLC9A8_chr20_49807828_49897242	49884274	G G	GACACACA others(22): Show GACACACACGACACACACACACACACACAC	intron_variant intron_variant	MODIFIER	HG02109.hp1 HG02109.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0004	a0001c0001t0004g0147 a0001c0001t0004g0147	1	360	0.0028	29	c.149 others(46): Show c.1491+216_1491+217insGACACACACACACACACACACACACACA C	SLC9A8	ENSG00000197818.12	transcript	ENST00000361573.3	protein_coding	14/15		INFO_REALIGN_3_PRIME	chr20	TogoVar
SLC9A8_chr20_49807828_49897242	49884289	G G	GACACACA others(22): Show GACACACACGACACACACACACACACACAC	intron_variant intron_variant	MODIFIER	HG02630.hp1 NA21309.hp1 HG02630.hp1 NA21309.hp1	a0001 a0004 a0001 a0004	a0001c0001 a0004c0009 a0001c0001 a0004c0009	a0001c0001t0007 a0004c0009t0020 a0001c0001t0007 a0004c0009t0020	a0001c0001t0007g0327 a0004c0009t0020g0289 a0001c0001t0007g0327 a0004c0009t0020g0289	2	360	0.0056	29	c.149 others(46): Show c.1491+231_1491+232insGACACACACACACACACACACACACACA C	SLC9A8	ENSG00000197818.12	transcript	ENST00000361573.3	protein_coding	14/15		INFO_REALIGN_3_PRIME	chr20	TogoVar
SLC9A9_chr3_143260222_143853468	143591615	C C	CAATTAAT others(22): Show CAATTAATAGACCTGTCTTGTCCATGCAAT	intron_variant intron_variant	MODIFIER	HG00738.hp1 HG02622.hp2 HG02809.hp1 others(7): Show HG00738.hp1 HG02622.hp2 HG02809.hp1 HG02886.hp2 HG02897.hp2 HG02976.hp2 HG03195.hp1 HG03471.hp2 NA19043.hp1 NA19240.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0003 others(1): Show a0001c0001 a0001c0002 a0001c0003 a0001c0015	a0001c0001t0007 a0001c0002t0003 a0001c0002t0005 others(7): Show a0001c0001t0007 a0001c0002t0003 a0001c0002t0005 a0001c0002t0007 a0001c0002t0008 a0001c0002t0014 a0001c0002t0017 a0001c0002t0023 a0001c0003t0004 a0001c0015t0021	a0001c0001t0007g0058 a0001c0002t0003g0005 a0001c0002t0005g0092 others(7): Show a0001c0001t0007g0058 a0001c0002t0003g0005 a0001c0002t0005g0092 a0001c0002t0007g0094 a0001c0002t0008g0080 a0001c0002t0014g0077 a0001c0002t0017g0010 a0001c0002t0023g0107 a0001c0003t0004g0095 a0001c0015t0021g0066	10	108	0.0926	29	c.756 others(48): Show c.756-12921_756-12893dupATTGCATGGACAAGACAGGTCTATTA ATT	SLC9A9	ENSG00000181804.15	transcript	ENST00000316549.11	protein_coding	6/15			chr3	TogoVar
SLC9A9_chr3_143260222_143853468	143797189	T T	TAAAATAT others(22): Show TAAAATATATATGTATATAAAATATATATA	intron_variant intron_variant	MODIFIER	HG00408.hp1 HG00438.hp1 HG00738.hp2 others(62): Show HG00408.hp1 HG00438.hp1 HG00738.hp2 HG01069.hp2 HG01175.hp2 HG01243.hp2 HG01255.hp1 HG01358.hp1 HG01496.hp2 HG01884.hp1 HG01934.hp1 HG01934.hp2 HG02080.hp1 HG02083.hp2 HG02145.hp1 HG02257.hp1 HG02258.hp1 HG02258.hp2 HG02451.hp1 HG02451.hp2 HG02615.hp1 HG02615.hp2 HG02622.hp2 HG02717.hp1 HG02717.hp2 HG02723.hp1 HG02723.hp2 HG02809.hp1 HG02886.hp1 HG02886.hp2 HG02970.hp1 HG02970.hp2 HG02976.hp1 HG02976.hp2 HG03041.hp1 HG03041.hp2 HG03130.hp1 HG03130.hp2 HG03195.hp2 HG03239.hp1 HG03453.hp1 HG03453.hp2 HG03471.hp1 HG03579.hp1 HG03579.hp2 HG03704.hp1 HG03704.hp2 HG03710.hp1 HG03710.hp2 NA18906.hp1 NA18942.hp2 NA18950.hp1 NA18950.hp2 NA18955.hp1 NA18955.hp2 NA18966.hp1 NA18966.hp2 NA19011.hp1 NA19011.hp2 NA19030.hp1 NA19030.hp2 NA19043.hp2 NA20300.hp1 NA20905.hp1 NA20905.hp2	a0001 a0002 a0003 a0001 a0002 a0003	a0001c0001 a0001c0002 a0001c0003 others(9): Show a0001c0001 a0001c0002 a0001c0003 a0001c0004 a0001c0005 a0001c0008 a0001c0009 a0001c0012 a0001c0016 a0002c0007 a0002c0011 a0003c0006	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(33): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 a0001c0001t0005 a0001c0001t0009 a0001c0001t0010 a0001c0001t0011 a0001c0001t0015 a0001c0001t0016 a0001c0001t0018 a0001c0001t0024 a0001c0002t0001 a0001c0002t0002 a0001c0002t0003 a0001c0002t0005 a0001c0002t0006 a0001c0002t0008 a0001c0002t0014 a0001c0002t0017 a0001c0002t0019 a0001c0002t0023 a0001c0003t0003 a0001c0003t0008 a0001c0004t0012 a0001c0004t0015 a0001c0005t0006 a0001c0005t0012 a0001c0008t0012 a0001c0009t0011 a0001c0012t0007 a0001c0016t0013 a0002c0007t0002 a0002c0011t0002 a0003c0006t0005 a0003c0006t0022	a0001c0001t0001g0004 a0001c0001t0001g0009 a0001c0001t0001g0016 others(62): Show a0001c0001t0001g0004 a0001c0001t0001g0009 a0001c0001t0001g0016 a0001c0001t0001g0041 a0001c0001t0001g0083 a0001c0001t0002g0017 a0001c0001t0002g0031 a0001c0001t0002g0035 a0001c0001t0002g0044 a0001c0001t0002g0049 a0001c0001t0002g0050 a0001c0001t0002g0051 a0001c0001t0002g0060 a0001c0001t0002g0069 a0001c0001t0002g0087 a0001c0001t0002g0091 a0001c0001t0003g0001 a0001c0001t0003g0025 a0001c0001t0003g0030 a0001c0001t0004g0007 a0001c0001t0004g0033 a0001c0001t0005g0090 a0001c0001t0009g0085 a0001c0001t0010g0020 a0001c0001t0010g0053 a0001c0001t0010g0062 a0001c0001t0011g0024 a0001c0001t0015g0105 a0001c0001t0016g0081 a0001c0001t0018g0096 a0001c0001t0024g0103 a0001c0002t0001g0036 a0001c0002t0001g0068 a0001c0002t0001g0089 a0001c0002t0002g0003 a0001c0002t0002g0063 a0001c0002t0003g0005 a0001c0002t0003g0012 a0001c0002t0003g0023 a0001c0002t0003g0043 a0001c0002t0003g0046 a0001c0002t0003g0052 a0001c0002t0003g0088 a0001c0002t0005g0013 a0001c0002t0006g0102 a0001c0002t0008g0039 a0001c0002t0014g0077 a0001c0002t0017g0010 a0001c0002t0019g0002 a0001c0002t0023g0107 a0001c0003t0003g0021 a0001c0003t0008g0074 a0001c0004t0012g0101 a0001c0004t0015g0100 a0001c0005t0006g0099 a0001c0005t0012g0097 a0001c0008t0012g0098 a0001c0009t0011g0037 a0001c0012t0007g0093 a0001c0016t0013g0084 a0002c0007t0002g0018 a0002c0007t0002g0042 a0002c0011t0002g0056 a0003c0006t0005g0008 a0003c0006t0022g0108	65	108	0.6019	29	c.379 others(44): Show c.379-287_379-286insTATATATATTTTATATACATATATATTTT	SLC9A9	ENSG00000181804.15	transcript	ENST00000316549.11	protein_coding	2/15			chr3	TogoVar
SLC9C1_chr3_112135898_112299216	112150840	A A	AAATACAC others(22): Show AAATACACATATATATATATATATATATTT	intron_variant intron_variant	MODIFIER	HG02717.hp1 HG02717.hp1	a0004 a0004	a0004c0005 a0004c0005	a0004c0005t0001 a0004c0005t0001	a0004c0005t0001g0018 a0004c0005t0001g0018	1	372	0.0027	29	c.352 others(48): Show c.3524+1016_3524+1017insAAATATATATATATATATATATGTGT ATT	SLC9C1	ENSG00000172139.15	transcript	ENST00000305815.10	protein_coding	28/28			chr3	TogoVar
SLCO3A1_chr15_91848708_92170903	91971394	C C	CAAAAAAA others(22): Show CAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG02559.hp1 HG02559.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0053 a0001c0002t0053	a0001c0002t0053g0180 a0001c0002t0053g0180	1	190	0.0053	29	c.646 others(48): Show c.646+54952_646+54953insAAAAAAAAAAAAAAAAAAAAAAAAAA AAA	SLCO3A1	ENSG00000176463.14	transcript	ENST00000318445.11	protein_coding	2/9		INFO_REALIGN_3_PRIME	chr15	TogoVar
SLCO3A1_chr15_91848708_92170903	92047254	C C	CATATATA others(22): Show CATATATATAATATATAAATATATATACAA	intron_variant intron_variant	MODIFIER	HG00621.hp2 HG02155.hp1 HG00621.hp2 HG02155.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0005 a0001c0001t0002 a0001c0001t0005	a0001c0001t0002g0116 a0001c0001t0005g0133 a0001c0001t0002g0116 a0001c0001t0005g0133	2	190	0.0105	29	c.647 others(48): Show c.647-47618_647-47617insATATATAAATATATATACAAATATAT ATA	SLCO3A1	ENSG00000176463.14	transcript	ENST00000318445.11	protein_coding	2/9		INFO_REALIGN_3_PRIME	chr15	TogoVar
SLCO4A1_chr20_62637503_62677293	62666114	C C	CGCCCCCC others(22): Show CGCCCCCCCGCCCCCCCTTCCCCTTCCCCT	intron_variant intron_variant	MODIFIER	HG02257.hp1 HG02257.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0290 a0001c0001t0001g0290	1	432	0.0023	29	c.127 others(46): Show c.1277-266_1277-265insGCCCCCCCGCCCCCCCTTCCCCTTCCCC T	SLCO4A1	ENSG00000101187.16	transcript	ENST00000217159.6	protein_coding	6/11			chr20	TogoVar
SLCO4A1_chr20_62637503_62677293	62666118	G G	GCCCCCCC others(22): Show GCCCCCCCCCCCCTTCCCCTTCCCCTTCCC	intron_variant intron_variant	MODIFIER	NA18963.hp2 NA18963.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0201 a0001c0001t0002g0201	1	432	0.0023	29	c.127 others(46): Show c.1277-261_1277-260insCCCCCCCCCCCTTCCCCTTCCCCTTCCC C	SLCO4A1	ENSG00000101187.16	transcript	ENST00000217159.6	protein_coding	6/11		INFO_REALIGN_3_PRIME	chr20	TogoVar
SLFN14_chr17_35538985_35565819	35561749	A A	AAAAAAAA others(22): Show AAAAAAAAAAAAAAAAAAAAAAAAAGAAAG	upstream_gene_variant upstream_gene_variant	MODIFIER	NA18978.hp1 NA18978.hp1	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0003 a0002c0002t0003	a0002c0002t0003g0004 a0002c0002t0003g0004	1	428	0.0023	29	c.-11 others(40): Show c.-1107_-1106insCTTTCTTTTTTTTTTTTTTTTTTTTTTTT	SLFN14	ENSG00000236320.4	transcript	ENST00000674182.1	protein_coding		931		chr17	TogoVar
SLIT2_chr4_20246905_20625561	20249712	C C	CAAACATC others(22): Show CAAACATCCTGCAGTAATACTAATGGAATA	upstream_gene_variant upstream_gene_variant	MODIFIER	NA18522.hp2 NA18522.hp2	a0005 a0005	a0005c0014 a0005c0014	a0005c0014t0052 a0005c0014t0052	a0005c0014t0052g0159 a0005c0014t0052g0159	1	230	0.0044	29	c.-41 others(40): Show c.-4104_-4103insAAACATCCTGCAGTAATACTAATGGAATA	SLIT2	ENSG00000145147.20	transcript	ENST00000504154.6	protein_coding		2192		chr4	TogoVar
SLIT2_chr4_20246905_20625561	20388893	T T	TATATATA others(22): Show TATATATAATATATACATATAATATATATA	intron_variant intron_variant	MODIFIER	HG03139.hp1 HG03139.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0230 a0001c0001t0003g0230	1	230	0.0044	29	c.396 others(48): Show c.396-78842_396-78814dupTATAATATATATAATATATAATATAT ACA	SLIT2	ENSG00000145147.20	transcript	ENST00000504154.6	protein_coding	4/36		INFO_REALIGN_3_PRIME	chr4	TogoVar
SLIT3_chr5_168656740_169306139	168967437	C C	CCTTTTTT others(22): Show CCTTTTTTTTTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG02559.hp1 HG02559.hp1	a0001 a0001	a0001c0013 a0001c0013	a0001c0013t0001 a0001c0013t0001	a0001c0013t0001g0047 a0001c0013t0001g0047	1	132	0.0076	29	c.414 others(48): Show c.414-84102_414-84101insAAAAAAAAAAAAAAAAAAAAAAAAAA AAG	SLIT3	ENSG00000184347.16	transcript	ENST00000519560.6	protein_coding	4/35			chr5	TogoVar
SLIT3_chr5_168656740_169306139	168967437	C C	CTTTTTTT others(22): Show CTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG03098.hp2 HG03098.hp2	a0001 a0001	a0001c0004 a0001c0004	a0001c0004t0010 a0001c0004t0010	a0001c0004t0010g0131 a0001c0004t0010g0131	1	132	0.0076	29	c.414 others(48): Show c.414-84102_414-84101insAAAAAAAAAAAAAAAAAAAAAAAAAA AAA	SLIT3	ENSG00000184347.16	transcript	ENST00000519560.6	protein_coding	4/35			chr5	TogoVar
SLITRK3_chr3_165181720_165201384	165196927	C C	CTCTCTCT others(22): Show CTCTCTCTCTCTCTCTCTCTCTCTCTCTCT	upstream_gene_variant upstream_gene_variant	MODIFIER	NA18950.hp2 NA18950.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0039 a0001c0001t0003g0039	1	414	0.0024	29	c.-13 others(40): Show c.-1370_-1369insAGAGAGAGAGAGAGAGAGAGAGAGAGAGA	SLITRK3	ENSG00000121871.4	transcript	ENST00000475390.2	protein_coding		544		chr3	TogoVar

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