JoGo: Joint Open Genome and Omics Platform

Search by Variant

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Chr

Chromosome name (e.g., chr11).

Snpeff genename

Exact SnpEff gene name.

Sampleids

Target sampleid (e.g. HG02615).

Snpeff haplotype class

Haplotype-annotation class (e.g., ahapid, ahapid+chapid).

Snpeff annotation impact

Exact impact level (e.g., HIGH, MODERATE, LOW).

Snpeff annotation impact detail

Keyword match in SnpEff annotation.

Hapid

One or more haplotype IDs (comma-separated; e.g., a0001, a01, a0001c0001, a01c02, a1c2, a0001c0001t0005, a0001c0001t0005g0018).

Samplehapid

Sample haplotype IDs to include (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

No_hapid

Haplotype IDs to exclude (comma-separated; e.g., a0001, a0002, a0001c0001, a0001c0001t0005, a1, a01).

No_samplehapid

Sample haplotype IDs to exclude (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

Start

Start position (GRCh38).

End

End position (GRCh38).

Minac

Minimum alternate allele count (≥).

Maxac

Maximum alternate allele count (≤).

Minlen

Minimum variant length (≥).

Maxlen

Maximum variant length (≤).

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⚠️ Results limited to 10,000 hits. Refine your search for more specific results.

regionname	pos	ref	alt	annotation	impact	samples	ahapids	achapids	acthapids	actghapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	external
OR13D1_chr9_104689518_104700462	104696107	A A	AAGAAAGA others(23): Show AAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	downstream_gene_variant downstream_gene_variant	MODIFIER	HG03834.hp1 HG03834.hp1	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0000 a0002c0002t0000	a0002c0002t0000g0000 a0002c0002t0000g0000	1	396	0.0025	30	c.64 others(39): Show c.645_*646insAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	OR13D1	ENSG00000179055.8	transcript	ENST00000641530.1	protein_coding		646		chr9	TogoVar
OR1E1_chr17_3392104_3403410	3399162	A A	AAAGAAGA others(23): Show AAAGAAGAAAGAAAGAAAGAAAGAAAGAAAG	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02080.hp2 HG02080.hp2	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0001 a0001c0003t0001	a0001c0003t0001g0000 a0001c0003t0001g0000	1	380	0.0026	30	c.-75 others(39): Show c.-753_-752insCTTTCTTTCTTTCTTTCTTTCTTTCTTCTT	OR1E1	ENSG00000180016.2	transcript	ENST00000322608.2	protein_coding		753		chr17	TogoVar
OR1E1_chr17_3392104_3403410	3399170	G G	GAAAGAAA others(23): Show GAAAGAAAGAAAGAAAAGAAAGAAAGAAAGA	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02129.hp2 HG02129.hp2	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0001 a0001c0003t0001	a0001c0003t0001g0000 a0001c0003t0001g0000	1	380	0.0026	30	c.-76 others(39): Show c.-761_-760insTCTTTCTTTCTTTCTTTTCTTTCTTTCTTT	OR1E1	ENSG00000180016.2	transcript	ENST00000322608.2	protein_coding		761		chr17	TogoVar
OR1F1_chr16_3183204_3211556	3188050	G G	GAAAAGAA others(23): Show GAAAAGAAAAGAAAAGAAAAGAAAAGAAAAA	upstream_gene_variant upstream_gene_variant	MODIFIER	NA19066.hp2 NA19066.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0001 a0002c0002t0001	a0002c0002t0001g0007 a0002c0002t0001g0007	1	328	0.0031	30	c.-59 others(39): Show c.-592_-591insAAAAGAAAAGAAAAGAAAAGAAAAGAAAAA	OR1F1	ENSG00000168124.3	transcript	ENST00000304646.3	protein_coding		153		chr16	TogoVar
OR1F1_chr16_3183204_3211556	3197995	G G	GGGAGAGG others(23): Show GGGAGAGGGAGAAGGAGAGGGAGAGGGAGAA	intron_variant intron_variant	MODIFIER	HG02683.hp2 NA18971.hp1 HG02683.hp2 NA18971.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0007 a0001c0001t0003 a0001c0001t0007	a0001c0001t0003g0222 a0001c0001t0007g0148 a0001c0001t0003g0222 a0001c0001t0007g0148	2	328	0.0061	30	c.-12 others(47): Show c.-12-6235_-12-6234insGGGAGAAGGAGAGGGAGAGGGAGAAGGA GA	OR1F1	ENSG00000168124.3	transcript	ENST00000304646.3	protein_coding	3/3		INFO_REALIGN_3_PRIME	chr16	TogoVar
OR1L3_chr9_122670130_122681104	122670871	A A	AGGAAGGA others(23): Show AGGAAGGAAGGAAGGAAGGAAGGAAAGGGAG	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00280.hp1 HG00741.hp2 HG00280.hp1 HG00741.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0000 a0001c0001t0000	a0001c0001t0000g0000 a0001c0001t0000g0000	2	380	0.0053	30	c.-42 others(41): Show c.-4259_-4258insGGAAGGAAGGAAGGAAGGAAGGAAAGGGAG	OR1L3	ENSG00000171481.5	transcript	ENST00000304820.5	protein_coding		4258		chr9	TogoVar
OR2B2_chr6_27906185_27917396	27915299	T T	TTATATAT others(23): Show TTATATATATATATATATATATATATATATA	upstream_gene_variant upstream_gene_variant	MODIFIER	NA19030.hp1 NA19030.hp1	a0004 a0004	a0004c0005 a0004c0005	a0004c0005t0001 a0004c0005t0001	a0004c0005t0001g0000 a0004c0005t0001g0000	1	398	0.0025	30	c.-29 others(41): Show c.-2981_-2980insTATATATATATATATATATATATATATATA	OR2B2	ENSG00000168131.4	transcript	ENST00000303324.4	protein_coding		2904		chr6	TogoVar
OR2B3_chr6_29081208_29092313	29084480	T T	TTATATAA others(23): Show TTATATAATATAATTATATATAATATAATAA	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00099.hp1 HG00642.hp2 HG00673.hp1 others(52): Show HG00099.hp1 HG00642.hp2 HG00673.hp1 HG01074.hp1 HG01081.hp1 HG01175.hp2 HG01255.hp1 HG01255.hp2 HG01433.hp2 HG01884.hp1 HG01943.hp1 HG02004.hp1 HG02056.hp1 HG02109.hp1 HG02109.hp2 HG02145.hp1 HG02273.hp2 HG02451.hp2 HG02572.hp2 HG02602.hp1 HG02615.hp2 HG02647.hp1 HG02723.hp2 HG02809.hp1 HG02809.hp2 HG02886.hp1 HG02970.hp1 HG02976.hp1 HG02976.hp2 HG03139.hp2 HG03225.hp1 HG03471.hp1 HG03471.hp2 HG03486.hp1 HG03540.hp1 HG03579.hp1 HG03579.hp2 HG04184.hp2 NA18949.hp2 NA18964.hp1 NA18968.hp1 NA18975.hp1 NA18994.hp1 NA19000.hp1 NA19002.hp1 NA19009.hp2 NA19030.hp2 NA19043.hp1 NA19060.hp2 NA19072.hp2 NA19080.hp2 NA20300.hp1 NA20805.hp2 NA21309.hp1 NA21309.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0001 a0001c0001t0002	a0001c0001t0001g0000 a0001c0001t0002g0000 a0001c0001t0001g0000 a0001c0001t0002g0000	55	409	0.1345	30	c.18 others(41): Show c.1826_*1827insTTATTATATTATATATAATTATATTATATA	OR2B3	ENSG00000204703.5	transcript	ENST00000377173.4	protein_coding		1727		chr6	TogoVar
OR2B3_chr6_29081208_29092313	29084494	T T	TATATATA others(23): Show TATATATAATATAATAATATATAATATAATA	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02622.hp2 HG02622.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0000 a0001c0001t0001g0000	1	409	0.0024	30	c.18 others(41): Show c.1812_*1813insTATTATATTATATATTATTATATTATATAT	OR2B3	ENSG00000204703.5	transcript	ENST00000377173.4	protein_coding		1713		chr6	TogoVar
OR2B3_chr6_29081208_29092313	29084509	A A	AATATATA others(23): Show AATATATAATATAATTATATATAATATAATT	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00735.hp2 HG01361.hp2 HG01884.hp2 others(29): Show HG00735.hp2 HG01361.hp2 HG01884.hp2 HG01891.hp1 HG01891.hp2 HG02055.hp2 HG02257.hp1 HG02258.hp1 HG02280.hp1 HG02486.hp1 HG02486.hp2 HG02615.hp1 HG02738.hp1 HG02922.hp2 HG02965.hp1 HG02965.hp2 HG03098.hp1 HG03098.hp2 HG03130.hp1 HG03195.hp1 HG03195.hp2 HG03209.hp1 HG03453.hp2 HG03486.hp2 HG03516.hp1 HG06807.hp1 HG06807.hp2 NA18906.hp2 NA19030.hp1 NA19240.hp1 NA19240.hp2 NA20129.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0000 a0001c0001t0001g0000	32	409	0.0782	30	c.17 others(41): Show c.1797_*1798insAATTATATTATATATAATTATATTATATAT	OR2B3	ENSG00000204703.5	transcript	ENST00000377173.4	protein_coding		1698		chr6	TogoVar
OR2L13_chr1_248090184_248106163	248095607	C C	CTTTTTTT others(23): Show CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG00558.hp1 HG00673.hp2 HG01952.hp2 others(7): Show HG00558.hp1 HG00673.hp2 HG01952.hp2 HG03490.hp1 HG03490.hp2 NA18747.hp1 NA18943.hp1 NA18950.hp1 NA18950.hp2 NA18954.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0012 a0001c0001t0001g0102 a0001c0001t0001g0103 a0001c0001t0001g0012 a0001c0001t0001g0102 a0001c0001t0001g0103	10	440	0.0227	30	c.-14 others(47): Show c.-144+370_-144+371insTTTTTTTTTTTTTTTTTTTTTTTTTTTT TT	OR2L13	ENSG00000196071.6	transcript	ENST00000358120.4	protein_coding	1/2		INFO_REALIGN_3_PRIME	chr1	TogoVar
OR2T1_chr1_248398048_248413020	248404546	T T	TTATATAT others(23): Show TTATATATATATATATATATATATATATATA	intron_variant intron_variant	MODIFIER	HG02080.hp2 HG02083.hp1 HG02080.hp2 HG02083.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0006 a0001c0001t0006	a0001c0001t0006g0153 a0001c0001t0006g0156 a0001c0001t0006g0153 a0001c0001t0006g0156	2	266	0.0075	30	c.-34 others(47): Show c.-34+1315_-34+1316insTATATATATATATATATATATATATATA TA	OR2T1	ENSG00000175143.5	transcript	ENST00000642005.1	protein_coding	1/1		INFO_REALIGN_3_PRIME	chr1	TogoVar
OR2T34_chr1_248568801_248579757	248569909	T T	TAAAAAAA others(23): Show TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01123.hp2 HG02040.hp1 HG01123.hp2 HG02040.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0000 a0001c0001t0000	a0001c0001t0000g0000 a0001c0001t0000g0000	2	314	0.0064	30	c.38 others(41): Show c.3891_*3892insTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	OR2T34	ENSG00000183310.3	transcript	ENST00000328782.3	protein_coding		3891		chr1	TogoVar
OR2V2_chr5_181142586_181164285	181156039	G G	GTTCTCTT others(23): Show GTTCTCTTTCTTTCTTTCTTTCTTTCTTTCT	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	NA18981.hp2 NA18981.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0065 a0001c0001t0065	a0001c0001t0065g0004 a0001c0001t0065g0004	1	424	0.0024	30	c.15 others(39): Show c.153_*154insCTTTCTTTCTTTCTTTCTTTCTTTCTTTCT	OR2V2	ENSG00000182613.3	transcript	ENST00000641492.1	protein_coding	2/2	154	INFO_REALIGN_3_PRIME	chr5	TogoVar
OR2V2_chr5_181142586_181164285	181160698	T T	TTGGGGGT others(23): Show TTGGGGGTGGGGCCAGGACGAGCATCGTCAC	downstream_gene_variant downstream_gene_variant	MODIFIER	NA19064.hp2 NA19064.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0001 a0002c0002t0001	a0002c0002t0001g0002 a0002c0002t0001g0002	1	424	0.0024	30	c.48 others(41): Show c.4808_*4809insTGGGGGTGGGGCCAGGACGAGCATCGTCAC	OR2V2	ENSG00000182613.3	transcript	ENST00000641492.1	protein_coding		1414		chr5	TogoVar
OR2V2_chr5_181142586_181164285	181160727	A A	ATTGGGGG others(23): Show ATTGGGGGTGGGGTCAGGACGAGCATCGTCG	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01106.hp1 HG01123.hp1 HG01256.hp1 others(12): Show HG01106.hp1 HG01123.hp1 HG01256.hp1 HG01258.hp2 HG01261.hp2 HG01516.hp1 HG01517.hp2 HG02055.hp1 HG02258.hp2 HG02486.hp2 HG02896.hp2 HG02897.hp1 HG02970.hp1 HG03139.hp2 NA19043.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0012 a0001c0001t0016 a0001c0001t0020 others(4): Show a0001c0001t0012 a0001c0001t0016 a0001c0001t0020 a0001c0001t0025 a0001c0001t0029 a0001c0001t0059 a0001c0001t0072	a0001c0001t0012g0009 a0001c0001t0016g0005 a0001c0001t0016g0009 others(6): Show a0001c0001t0012g0009 a0001c0001t0016g0005 a0001c0001t0016g0009 a0001c0001t0020g0009 a0001c0001t0025g0009 a0001c0001t0029g0095 a0001c0001t0029g0096 a0001c0001t0059g0005 a0001c0001t0072g0084	15	424	0.0354	30	c.48 others(41): Show c.4837_*4838insTTGGGGGTGGGGTCAGGACGAGCATCGTCG	OR2V2	ENSG00000182613.3	transcript	ENST00000641492.1	protein_coding		1443		chr5	TogoVar
OR2V2_chr5_181142586_181164285	181160860	C C	CCAGGACG others(23): Show CCAGGACGAGCATCGTCGTTGGGGGTGGGTA	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00738.hp2 HG00738.hp2	a0003 a0003	a0003c0003 a0003c0003	a0003c0003t0075 a0003c0003t0075	a0003c0003t0075g0004 a0003c0003t0075g0004	1	424	0.0024	30	c.49 others(41): Show c.4970_*4971insCAGGACGAGCATCGTCGTTGGGGGTGGGTA	OR2V2	ENSG00000182613.3	transcript	ENST00000641492.1	protein_coding		1576		chr5	TogoVar
OR3A2_chr17_3271177_3391308	3367601	G G	GTATATAT others(23): Show GTATATATATATATATATATATATATATATA	intron_variant intron_variant	MODIFIER	HG03130.hp2 HG03130.hp2	a0007 a0007	a0007c0009 a0007c0009	a0007c0009t0020 a0007c0009t0020	a0007c0009t0020g0248 a0007c0009t0020g0248	1	318	0.0031	30	c.-37 others(51): Show c.-377+18523_-377+18524insTATATATATATATATATATATATA TATATA	OR3A2	ENSG00000221882.5	transcript	ENST00000573901.3	protein_coding	1/4			chr17	TogoVar
OR3A2_chr17_3271177_3391308	3372847	A A	AGGAGAGG others(23): Show AGGAGAGGGAGAGGGAGAGGGAGAGGGAGAG	intron_variant intron_variant	MODIFIER	HG00673.hp2 HG01243.hp2 HG02300.hp1 others(8): Show HG00673.hp2 HG01243.hp2 HG02300.hp1 HG02572.hp1 NA18966.hp1 NA18973.hp2 NA18975.hp1 NA19000.hp1 NA19009.hp1 NA19067.hp2 NA19079.hp2	a0001 a0003 a0006 a0001 a0003 a0006	a0001c0001 a0001c0003 a0003c0004 others(1): Show a0001c0001 a0001c0003 a0003c0004 a0006c0007	a0001c0001t0001 a0001c0001t0002 a0001c0003t0001 others(2): Show a0001c0001t0001 a0001c0001t0002 a0001c0003t0001 a0003c0004t0008 a0006c0007t0001	a0001c0001t0001g0129 a0001c0001t0001g0131 a0001c0001t0001g0132 others(8): Show a0001c0001t0001g0129 a0001c0001t0001g0131 a0001c0001t0001g0132 a0001c0001t0002g0073 a0001c0003t0001g0136 a0001c0003t0001g0137 a0001c0003t0001g0155 a0003c0004t0008g0075 a0006c0007t0001g0116 a0006c0007t0001g0130 a0006c0007t0001g0133	11	318	0.0346	30	c.-37 others(51): Show c.-377+13248_-377+13277dupCTCTCCCTCTCCCTCTCCCTCTCC CTCTCC	OR3A2	ENSG00000221882.5	transcript	ENST00000573901.3	protein_coding	1/4			chr17	TogoVar
OR4D10_chr11_59468315_59484361	59483771	T T	TTATATAC others(23): Show TTATATACATATATATATATATATATATATA	downstream_gene_variant downstream_gene_variant	MODIFIER	HG03540.hp1 HG03540.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0012 a0001c0001t0002g0012	1	430	0.0023	30	c.54 others(41): Show c.5406_*5407insTATATACATATATATATATATATATATATA	OR4D10	ENSG00000254466.2	transcript	ENST00000530162.2	protein_coding		4411		chr11	TogoVar
OR4D10_chr11_59468315_59484361	59483771	T T	TTATATAT others(23): Show TTATATATATATATATATATATATATATATA	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02015.hp1 HG02293.hp2 HG03195.hp1 others(4): Show HG02015.hp1 HG02293.hp2 HG03195.hp1 NA18943.hp2 NA18964.hp1 NA18979.hp2 NA19070.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(1): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0008	a0001c0001t0001g0001 a0001c0001t0002g0033 a0001c0001t0003g0004 others(1): Show a0001c0001t0001g0001 a0001c0001t0002g0033 a0001c0001t0003g0004 a0001c0001t0008g0009	7	430	0.0163	30	c.54 others(41): Show c.5406_*5407insTATATATATATATATATATATATATATATA	OR4D10	ENSG00000254466.2	transcript	ENST00000530162.2	protein_coding		4411		chr11	TogoVar
OR4K2_chr14_19870142_19888932	19872302	T T	TACATATA others(23): Show TACATATATATACCTATTTATATATATATAC	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00099.hp1 HG00099.hp2 HG00642.hp1 others(29): Show HG00099.hp1 HG00099.hp2 HG00642.hp1 HG01109.hp1 HG01167.hp1 HG01243.hp2 HG02015.hp2 HG02040.hp2 HG02145.hp1 HG02165.hp1 HG02486.hp2 HG02717.hp2 HG02738.hp1 HG02886.hp2 HG02896.hp1 HG03041.hp1 HG03225.hp1 HG04204.hp2 NA18612.hp1 NA18952.hp1 NA18957.hp1 NA18967.hp1 NA18975.hp1 NA18986.hp1 NA18987.hp1 NA19055.hp2 NA19056.hp2 NA19058.hp2 NA19059.hp2 NA19063.hp2 NA19083.hp1 NA19091.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0002c0002 a0002c0007 a0001c0001 a0002c0002 a0002c0007	a0001c0001t0001 a0001c0001t0003 a0001c0001t0006 others(15): Show a0001c0001t0001 a0001c0001t0003 a0001c0001t0006 a0001c0001t0013 a0001c0001t0058 a0001c0001t0060 a0001c0001t0062 a0001c0001t0063 a0001c0001t0071 a0001c0001t0075 a0001c0001t0077 a0001c0001t0078 a0001c0001t0079 a0001c0001t0094 a0001c0001t0095 a0002c0002t0010 a0002c0002t0028 a0002c0007t0010	a0001c0001t0001g0002 a0001c0001t0001g0003 a0001c0001t0003g0002 others(20): Show a0001c0001t0001g0002 a0001c0001t0001g0003 a0001c0001t0003g0002 a0001c0001t0003g0003 a0001c0001t0006g0001 a0001c0001t0006g0002 a0001c0001t0013g0002 a0001c0001t0058g0002 a0001c0001t0060g0001 a0001c0001t0062g0001 a0001c0001t0063g0003 a0001c0001t0071g0004 a0001c0001t0075g0001 a0001c0001t0077g0001 a0001c0001t0078g0001 a0001c0001t0079g0002 a0001c0001t0094g0002 a0001c0001t0095g0002 a0002c0002t0010g0001 a0002c0002t0010g0003 a0002c0002t0028g0002 a0002c0002t0028g0004 a0002c0007t0010g0003	32	254	0.1260	30	c.-38 others(41): Show c.-3856_-3855insACATATATATACCTATTTATATATATATAC	OR4K2	ENSG00000165762.3	transcript	ENST00000641885.1	protein_coding		2839		chr14	TogoVar
OR4M1_chr14_19768504_19788696	19787265	T T	TTCCTTCC others(23): Show TTCCTTCCTTCTTTCCTTTTCTTTCTTCTTC	downstream_gene_variant downstream_gene_variant	MODIFIER	HG03516.hp2 HG03516.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0069 a0001c0001t0001g0069	1	276	0.0036	30	c.60 others(41): Show c.6001_*6002insTCCTTCCTTCTTTCCTTTTCTTTCTTCTTC	OR4M1	ENSG00000176299.5	transcript	ENST00000641200.1	protein_coding		3570		chr14	TogoVar
OR4M1_chr14_19768504_19788696	19787265	T T	TTCCTTCC others(23): Show TTCCTTCCTTCTTTCCTTTTCTTTCTTCTTG	downstream_gene_variant downstream_gene_variant	MODIFIER	NA18974.hp2 NA18974.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0003 a0002c0002t0003	a0002c0002t0003g0002 a0002c0002t0003g0002	1	276	0.0036	30	c.60 others(41): Show c.6001_*6002insTCCTTCCTTCTTTCCTTTTCTTTCTTCTTG	OR4M1	ENSG00000176299.5	transcript	ENST00000641200.1	protein_coding		3570		chr14	TogoVar
OR4M2B_chr15_21632909_21643992	21634742	C C	CATATATA others(23): Show CATATATATATATATATATATATATATATAT	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02886.hp1 HG06807.hp2 NA18989.hp1 others(1): Show HG02886.hp1 HG06807.hp2 NA18989.hp1 NA19066.hp2	a0005 a0006 a0008 a0005 a0006 a0008	a0005c0006 a0006c0007 a0008c0009 a0005c0006 a0006c0007 a0008c0009	a0005c0006t0001 a0006c0007t0001 a0008c0009t0001 a0005c0006t0001 a0006c0007t0001 a0008c0009t0001	a0005c0006t0001g0000 a0006c0007t0001g0000 a0008c0009t0001g0000 a0005c0006t0001g0000 a0006c0007t0001g0000 a0008c0009t0001g0000	4	215	0.0186	30	c.-32 others(41): Show c.-3265_-3264insATATATATATATATATATATATATATATAT	OR4M2B	ENSG00000182974.3	transcript	ENST00000332663.3	protein_coding		3166		chr15	TogoVar
OR4M2B_chr15_21632909_21643992	21642103	G G	GTATATAT others(23): Show GTATATATATATACACACATATATATGTATA	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00423.hp2 HG01243.hp2 HG02129.hp2 others(13): Show HG00423.hp2 HG01243.hp2 HG02129.hp2 HG02155.hp2 HG02809.hp2 HG02886.hp1 HG03041.hp1 HG03195.hp2 NA18612.hp1 NA18948.hp2 NA18956.hp2 NA18960.hp2 NA18988.hp2 NA18993.hp2 NA19012.hp2 NA19066.hp2	a0001 a0005 a0008 others(1): Show a0001 a0005 a0008 a0009	a0001c0002 a0005c0006 a0008c0009 others(1): Show a0001c0002 a0005c0006 a0008c0009 a0009c0012	a0001c0002t0001 a0005c0006t0001 a0008c0009t0001 others(1): Show a0001c0002t0001 a0005c0006t0001 a0008c0009t0001 a0009c0012t0001	a0001c0002t0001g0000 a0005c0006t0001g0000 a0008c0009t0001g0000 others(1): Show a0001c0002t0001g0000 a0005c0006t0001g0000 a0008c0009t0001g0000 a0009c0012t0001g0000	16	215	0.0744	30	c.31 others(41): Show c.3155_*3156insTATATATATATACACACATATATATGTATA	OR4M2B	ENSG00000182974.3	transcript	ENST00000332663.3	protein_coding		3112		chr15	TogoVar
OR4S1_chr11_48301223_48312152	48305473	T T	TTGGGGAG others(23): Show TTGGGGAGGTGGCAGCTCCTTTTCCAAAGTA	upstream_gene_variant upstream_gene_variant	MODIFIER	HG03130.hp2 HG03130.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0000 a0001c0002t0000	a0001c0002t0000g0000 a0001c0002t0000g0000	1	426	0.0024	30	c.-75 others(39): Show c.-750_-749insTGGGGAGGTGGCAGCTCCTTTTCCAAAGTA	OR4S1	ENSG00000176555.1	transcript	ENST00000319988.1	protein_coding		749		chr11	TogoVar
OR4S1_chr11_48301223_48312152	48305955	T T	TAATAATA others(23): Show TAATAATATATTATATATATTATATATATAA	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02965.hp2 HG03130.hp1 HG06807.hp2 HG02965.hp2 HG03130.hp1 HG06807.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0000 a0001c0002t0000	a0001c0002t0000g0000 a0001c0002t0000g0000	3	426	0.0070	30	c.-26 others(39): Show c.-268_-267insAATAATATATTATATATATTATATATATAA	OR4S1	ENSG00000176555.1	transcript	ENST00000319988.1	protein_coding		267		chr11	TogoVar
OR52E5_chr11_5888208_5907730	5902763	A A	AGGAGTGC others(23): Show AGGAGTGCAAAATGTTGACGTGGTCAAGTAG	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02056.hp2 HG02056.hp2	a0011 a0011	a0011c0015 a0011c0015	a0011c0015t0020 a0011c0015t0020	a0011c0015t0020g0004 a0011c0015t0020g0004	1	464	0.0022	30	c.10 others(41): Show c.1003_*1004insGGAGTGCAAAATGTTGACGTGGTCAAGTAG	OR52E5	ENSG00000277932.2	transcript	ENST00000610445.2	protein_coding		34		chr11	TogoVar
OR52N1_chr11_5781471_5796265	5794426	C C	CTCTCTCT others(23): Show CTCTCTCTCTCTCTCTCTCTCTCTATATATA	upstream_gene_variant upstream_gene_variant	MODIFIER	HG04204.hp1 HG04204.hp1	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0002 a0002c0002t0002	a0002c0002t0002g0002 a0002c0002t0002g0002	1	418	0.0024	30	c.-33 others(41): Show c.-3361_-3360insTATATATAGAGAGAGAGAGAGAGAGAGAGA	OR52N1	ENSG00000181001.3	transcript	ENST00000641645.1	protein_coding		3162		chr11	TogoVar
OR52N5_chr11_5771165_5788355	5772951	G G	GTATATAT others(23): Show GTATATATATATATTTTATATATATATATTT	downstream_gene_variant downstream_gene_variant	MODIFIER	HG04228.hp2 HG04228.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0002 a0002c0002t0002	a0002c0002t0002g0027 a0002c0002t0002g0027	1	338	0.0030	30	c.47 others(41): Show c.4708_*4709insAAATATATATATATAAAATATATATATATA	OR52N5	ENSG00000181009.5	transcript	ENST00000641181.1	protein_coding		3213		chr11	TogoVar
OR56B2P_chr11_5756153_5774080	5772951	G G	GTATATAT others(23): Show GTATATATATATATTTTATATATATATATTT	downstream_gene_variant downstream_gene_variant	MODIFIER	HG04228.hp1 HG04228.hp1	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0004 a0002c0002t0004	a0002c0002t0004g0002 a0002c0002t0004g0002	1	434	0.0023	30	c.69 others(41): Show c.6902_*6903insTATATATATATATTTTATATATATATATTT	OR56B2P	ENSG00000181017.7	transcript	ENST00000641377.2	protein_coding		3872		chr11	TogoVar
OR5AS1_chr11_56022654_56043191	56039648	T T	TATATATA others(23): Show TATATATATATATATATATACACACACATAC	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00609.hp1 HG00733.hp1 HG01358.hp2 others(11): Show HG00609.hp1 HG00733.hp1 HG01358.hp2 HG02056.hp1 HG02886.hp1 HG03239.hp1 NA18944.hp1 NA18954.hp2 NA18959.hp1 NA18974.hp1 NA18993.hp1 NA19007.hp2 NA19062.hp1 NA19088.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0004 a0002c0002t0037 a0002c0002t0050 a0002c0002t0004 a0002c0002t0037 a0002c0002t0050	a0002c0002t0004g0003 a0002c0002t0037g0003 a0002c0002t0050g0003 a0002c0002t0004g0003 a0002c0002t0037g0003 a0002c0002t0050g0003	14	432	0.0324	30	c.82 others(41): Show c.8255_*8256insATATATATATATATATATACACACACATAC	OR5AS1	ENSG00000181785.3	transcript	ENST00000641320.1	protein_coding		1458		chr11	TogoVar
OR5AS1_chr11_56022654_56043191	56039648	T T	TATATATA others(23): Show TATATATATATATATATATATATATACATAC	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01891.hp1 HG01891.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0034 a0001c0001t0001g0034	1	432	0.0023	30	c.82 others(41): Show c.8255_*8256insATATATATATATATATATATATATACATAC	OR5AS1	ENSG00000181785.3	transcript	ENST00000641320.1	protein_coding		1458		chr11	TogoVar
OR5AS1_chr11_56022654_56043191	56039648	T T	TATATATA others(23): Show TATATATATATATATATATATATATATATAC	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01257.hp1 HG01258.hp2 HG02027.hp2 others(2): Show HG01257.hp1 HG01258.hp2 HG02027.hp2 HG02040.hp2 NA18947.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0003 a0001c0001t0020 a0001c0001t0001 a0001c0001t0003 a0001c0001t0020	a0001c0001t0001g0001 a0001c0001t0003g0002 a0001c0001t0020g0002 a0001c0001t0001g0001 a0001c0001t0003g0002 a0001c0001t0020g0002	5	432	0.0116	30	c.82 others(41): Show c.8255_*8256insATATATATATATATATATATATATATATAC	OR5AS1	ENSG00000181785.3	transcript	ENST00000641320.1	protein_coding		1458		chr11	TogoVar
OR5C1_chr9_122783933_122794895	122786935	A A	AAAAAAAA others(23): Show AAAAAAAAAATATATATATATATATATATAT	upstream_gene_variant upstream_gene_variant	MODIFIER	HG03516.hp1 HG03516.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0000 a0001c0001t0000	a0001c0001t0000g0000 a0001c0001t0000g0000	1	442	0.0023	30	c.-19 others(41): Show c.-1998_-1997insAAAAAAAAATATATATATATATATATATAT	OR5C1	ENSG00000148215.4	transcript	ENST00000373680.3	protein_coding		1997		chr9	TogoVar
OR5D13_chr11_55768438_55779382	55775697	G G	GACACACA others(23): Show GACACACACACACACACACAGACACACACAC	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02280.hp1 HG02280.hp1	a0001 a0001	a0001c0008 a0001c0008	a0001c0008t0000 a0001c0008t0000	a0001c0008t0000g0000 a0001c0008t0000g0000	1	432	0.0023	30	c.13 others(41): Show c.1315_*1316insACACACACACACACACACAGACACACACAC	OR5D13	ENSG00000279761.2	transcript	ENST00000623930.1	protein_coding		1316		chr11	TogoVar
OR5D18_chr11_55814630_55825571	55823246	T T	TATATATA others(23): Show TATATATATAGAGAGAGAGAGAGAGAGAGAG	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02602.hp1 NA18940.hp1 HG02602.hp1 NA18940.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0000 a0001c0001t0000	a0001c0001t0000g0000 a0001c0001t0000g0000	2	434	0.0046	30	c.26 others(41): Show c.2675_*2676insATATATATAGAGAGAGAGAGAGAGAGAGAG	OR5D18	ENSG00000186119.9	transcript	ENST00000333976.7	protein_coding		2676		chr11	TogoVar
OR5D18_chr11_55814630_55825571	55823246	T T	TATATATA others(23): Show TATATATATATATATAGAGAGAGAGAGAGAG	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00544.hp1 HG00544.hp1	a0009 a0009	a0009c0011 a0009c0011	a0009c0011t0000 a0009c0011t0000	a0009c0011t0000g0000 a0009c0011t0000g0000	1	434	0.0023	30	c.26 others(41): Show c.2675_*2676insATATATATATATATAGAGAGAGAGAGAGAG	OR5D18	ENSG00000186119.9	transcript	ENST00000333976.7	protein_coding		2676		chr11	TogoVar
OR5D18_chr11_55814630_55825571	55823246	T T	TATATATA others(23): Show TATATATATATATATATATATAGAGAGAGAG	downstream_gene_variant downstream_gene_variant	MODIFIER	NA19003.hp1 NA19003.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0000 a0001c0001t0000	a0001c0001t0000g0000 a0001c0001t0000g0000	1	434	0.0023	30	c.26 others(41): Show c.2675_*2676insATATATATATATATATATATAGAGAGAGAG	OR5D18	ENSG00000186119.9	transcript	ENST00000333976.7	protein_coding		2676		chr11	TogoVar
OR5L2_chr11_55822219_55833154	55823246	T T	TATATATA others(23): Show TATATATATAGAGAGAGAGAGAGAGAGAGAG	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02602.hp1 NA18940.hp2 HG02602.hp1 NA18940.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0000 a0001c0001t0000	a0001c0001t0000g0000 a0001c0001t0000g0000	2	448	0.0045	30	c.-39 others(41): Show c.-3973_-3972insATATATATAGAGAGAGAGAGAGAGAGAGAG	OR5L2	ENSG00000205030.1	transcript	ENST00000378397.1	protein_coding		3972		chr11	TogoVar
OR5L2_chr11_55822219_55833154	55823246	T T	TATATATA others(23): Show TATATATATATATATAGAGAGAGAGAGAGAG	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00544.hp2 HG00544.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0000 a0001c0001t0000	a0001c0001t0000g0000 a0001c0001t0000g0000	1	448	0.0022	30	c.-39 others(41): Show c.-3973_-3972insATATATATATATATAGAGAGAGAGAGAGAG	OR5L2	ENSG00000205030.1	transcript	ENST00000378397.1	protein_coding		3972		chr11	TogoVar
OR5L2_chr11_55822219_55833154	55823246	T T	TATATATA others(23): Show TATATATATATATATATATATAGAGAGAGAG	upstream_gene_variant upstream_gene_variant	MODIFIER	NA19003.hp1 NA19003.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0000 a0001c0001t0000	a0001c0001t0000g0000 a0001c0001t0000g0000	1	448	0.0022	30	c.-39 others(41): Show c.-3973_-3972insATATATATATATATATATATAGAGAGAGAG	OR5L2	ENSG00000205030.1	transcript	ENST00000378397.1	protein_coding		3972		chr11	TogoVar
OR6J1_chr14_22625929_22649352	22636225	G G	GCCCTCTC others(23): Show GCCCTCTCCCTCTCCCTCTCCCTCTCCCTCT	intron_variant intron_variant	MODIFIER	HG01433.hp1 HG01433.hp1	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0002 a0002c0002t0002	a0002c0002t0002g0039 a0002c0002t0002g0039	1	362	0.0028	30	c.-27 others(47): Show c.-27-1417_-27-1388dupAGAGGGAGAGGGAGAGGGAGAGGGAGAG GG	OR6J1	ENSG00000255804.2	transcript	ENST00000540461.2	protein_coding	1/1			chr14	TogoVar
OR6K2_chr1_158694678_158705652	158703283	A A	AATCATCA others(23): Show AATCATCATCATCATCATCATCATCATCATC	upstream_gene_variant upstream_gene_variant	MODIFIER	HG03209.hp1 HG03209.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0000 a0001c0002t0000	a0001c0002t0000g0000 a0001c0002t0000g0000	1	462	0.0022	30	c.-26 others(41): Show c.-2632_-2631insGATGATGATGATGATGATGATGATGATGAT	OR6K2	ENSG00000196171.3	transcript	ENST00000359610.3	protein_coding		2632		chr1	TogoVar
OR7A10_chr19_14835466_14853922	14844664	G G	GTTTTTTT others(23): Show GTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG00738.hp2 HG01123.hp2 NA18946.hp1 others(1): Show HG00738.hp2 HG01123.hp2 NA18946.hp1 NA18953.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0003 a0001c0002t0003	a0001c0002t0003g0054 a0001c0002t0003g0061 a0001c0002t0003g0054 a0001c0002t0003g0061	4	488	0.0082	30	c.-12 others(47): Show c.-12-2776_-12-2775insAAAAAAAAAAAAAAAAAAAAAAAAAAAA AA	OR7A10	ENSG00000127515.3	transcript	ENST00000641129.1	protein_coding	1/1			chr19	TogoVar
OR7D2_chr19_9173979_9193818	9175557	C C	CATATATA others(23): Show CATATATATATATATATATATATATATATAT	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00408.hp2 HG01358.hp1 HG03942.hp2 others(1): Show HG00408.hp2 HG01358.hp1 HG03942.hp2 NA18984.hp2	a0001 a0001	a0001c0002 a0001c0003 a0001c0002 a0001c0003	a0001c0002t0002 a0001c0002t0036 a0001c0003t0002 a0001c0002t0002 a0001c0002t0036 a0001c0003t0002	a0001c0002t0002g0003 a0001c0002t0036g0003 a0001c0003t0002g0003 others(1): Show a0001c0002t0002g0003 a0001c0002t0036g0003 a0001c0003t0002g0003 a0001c0003t0002g0138	4	398	0.0101	30	c.-36 others(41): Show c.-3671_-3670insATATATATATATATATATATATATATATAT	OR7D2	ENSG00000188000.6	transcript	ENST00000641288.2	protein_coding		3421		chr19	TogoVar
OR7E24_chr19_9245930_9257625	9253449	G G	GATATATA others(23): Show GATATATATATATATATATATATATATATAT	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00639.hp1 HG01070.hp1 HG01167.hp2 others(17): Show HG00639.hp1 HG01070.hp1 HG01167.hp2 HG01169.hp2 HG01346.hp2 HG01433.hp1 HG01433.hp2 HG01975.hp2 HG02602.hp1 HG02647.hp1 HG03834.hp1 HG04228.hp1 NA18522.hp1 NA18747.hp1 NA18944.hp1 NA18954.hp2 NA18965.hp2 NA18968.hp2 NA18969.hp2 NA19062.hp2	a0001 a0002 a0003 a0001 a0002 a0003	a0001c0001 a0002c0002 a0003c0003 a0001c0001 a0002c0002 a0003c0003	a0001c0001t0001 a0002c0002t0001 a0002c0002t0002 others(1): Show a0001c0001t0001 a0002c0002t0001 a0002c0002t0002 a0003c0003t0003	a0001c0001t0001g0000 a0002c0002t0001g0000 a0002c0002t0002g0000 others(1): Show a0001c0001t0001g0000 a0002c0002t0001g0000 a0002c0002t0002g0000 a0003c0003t0003g0000	20	476	0.0420	30	c.13 others(41): Show c.1386_*1387insATATATATATATATATATATATATATATAT	OR7E24	ENSG00000237521.4	transcript	ENST00000456448.3	protein_coding		825		chr19	TogoVar
OR7E24_chr19_9245930_9257625	9253459	T T	TATATATA others(23): Show TATATATATATATATATATATATATATATAC	downstream_gene_variant downstream_gene_variant	MODIFIER	NA20905.hp2 NA20905.hp2	a0003 a0003	a0003c0003 a0003c0003	a0003c0003t0003 a0003c0003t0003	a0003c0003t0003g0000 a0003c0003t0003g0000	1	476	0.0021	30	c.13 others(41): Show c.1396_*1397insATATATATATATATATATATATATATATAC	OR7E24	ENSG00000237521.4	transcript	ENST00000456448.3	protein_coding		835		chr19	TogoVar
OR7E24_chr19_9245930_9257625	9253461	T T	TATATATA others(23): Show TATATATATATATATATATATATATATATAC	downstream_gene_variant downstream_gene_variant	MODIFIER	HG03688.hp2 NA19088.hp1 HG03688.hp2 NA19088.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0002c0002 a0001c0001 a0002c0002	a0001c0001t0001 a0002c0002t0002 a0001c0001t0001 a0002c0002t0002	a0001c0001t0001g0000 a0002c0002t0002g0000 a0001c0001t0001g0000 a0002c0002t0002g0000	2	476	0.0042	30	c.13 others(41): Show c.1398_*1399insATATATATATATATATATATATATATATAC	OR7E24	ENSG00000237521.4	transcript	ENST00000456448.3	protein_coding		837		chr19	TogoVar

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