JoGo: Joint Open Genome and Omics Platform

Search by Variant

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Chr

Chromosome name (e.g., chr11).

Snpeff genename

Exact SnpEff gene name.

Sampleids

Target sampleid (e.g. HG02615).

Snpeff haplotype class

Haplotype-annotation class (e.g., ahapid, ahapid+chapid).

Snpeff annotation impact

Exact impact level (e.g., HIGH, MODERATE, LOW).

Snpeff annotation impact detail

Keyword match in SnpEff annotation.

Hapid

One or more haplotype IDs (comma-separated; e.g., a0001, a01, a0001c0001, a01c02, a1c2, a0001c0001t0005, a0001c0001t0005g0018).

Samplehapid

Sample haplotype IDs to include (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

No_hapid

Haplotype IDs to exclude (comma-separated; e.g., a0001, a0002, a0001c0001, a0001c0001t0005, a1, a01).

No_samplehapid

Sample haplotype IDs to exclude (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

Start

Start position (GRCh38).

End

End position (GRCh38).

Minac

Minimum alternate allele count (≥).

Maxac

Maximum alternate allele count (≤).

Minlen

Minimum variant length (≥).

Maxlen

Maximum variant length (≤).

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⚠️ Results limited to 10,000 hits. Refine your search for more specific results.

regionname	pos	ref	alt	annotation	impact	samples	ahapids	achapids	acthapids	actghapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	external
PCDH9_chr13_66297834_67235336	67214935	G G	GATATATA others(23): Show GATATATATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG02738.hp1 HG02738.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0002 a0001c0002t0002	a0001c0002t0002g0011 a0001c0002t0002g0011	1	80	0.0125	30	c.303 others(51): Show c.3036+10440_3036+10469dupATATATATATATATATATATATAT ATATAT	PCDH9	ENSG00000184226.15	transcript	ENST00000377865.7	protein_coding	2/4			chr13	TogoVar
PCDH9_chr13_66297834_67235336	67216683	C C	CATATATA others(23): Show CATATATATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	NA18906.hp2 NA18906.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0003 a0001c0002t0003	a0001c0002t0003g0047 a0001c0002t0003g0047	1	80	0.0125	30	c.303 others(49): Show c.3036+8721_3036+8722insATATATATATATATATATATATATAT ATAT	PCDH9	ENSG00000184226.15	transcript	ENST00000377865.7	protein_coding	2/4			chr13	TogoVar
PCDHA10_chr5_140850897_141017347	140946611	A A	AATATATA others(23): Show AATATATATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG01978.hp1 HG02145.hp1 HG02451.hp2 HG01978.hp1 HG02145.hp1 HG02451.hp2	a0001 a0002 a0004 a0001 a0002 a0004	a0001c0001 a0002c0002 a0004c0004 a0001c0001 a0002c0002 a0004c0004	a0001c0001t0001 a0002c0002t0001 a0004c0004t0001 a0001c0001t0001 a0002c0002t0001 a0004c0004t0001	a0001c0001t0001g0020 a0002c0002t0001g0096 a0004c0004t0001g0004 a0001c0001t0001g0020 a0002c0002t0001g0096 a0004c0004t0001g0004	3	260	0.0115	30	c.238 others(51): Show c.2389-32317_2389-32316insTATATATATATATATATATATATA TATATA	PCDHA10	ENSG00000250120.8	transcript	ENST00000307360.6	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA10_chr5_140850897_141017347	140946631	T T	TATATATA others(23): Show TATATATATATATATATATATATATATACAC	intron_variant intron_variant	MODIFIER	HG01884.hp2 HG02486.hp1 HG02970.hp1 others(1): Show HG01884.hp2 HG02486.hp1 HG02970.hp1 HG03516.hp1	a0001 a0002 a0005 a0001 a0002 a0005	a0001c0001 a0002c0002 a0005c0005 a0001c0001 a0002c0002 a0005c0005	a0001c0001t0003 a0002c0002t0003 a0005c0005t0001 a0001c0001t0003 a0002c0002t0003 a0005c0005t0001	a0001c0001t0003g0242 a0002c0002t0003g0076 a0005c0005t0001g0079 others(1): Show a0001c0001t0003g0242 a0002c0002t0003g0076 a0005c0005t0001g0079 a0005c0005t0001g0080	4	260	0.0154	30	c.238 others(51): Show c.2389-32317_2389-32316insTATATATATATATATATATATATA TACACA	PCDHA10	ENSG00000250120.8	transcript	ENST00000307360.6	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA10_chr5_140850897_141017347	140946631	T T	TATATATA others(23): Show TATATATATATATATATATATATATATATAC	intron_variant intron_variant	MODIFIER	NA19240.hp2 NA19240.hp2	a0003 a0003	a0003c0003 a0003c0003	a0003c0003t0001 a0003c0003t0001	a0003c0003t0001g0027 a0003c0003t0001g0027	1	260	0.0039	30	c.238 others(51): Show c.2389-32317_2389-32316insTATATATATATATATATATATATA TATACA	PCDHA10	ENSG00000250120.8	transcript	ENST00000307360.6	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA11_chr5_140863957_141017347	140946611	A A	AATATATA others(23): Show AATATATATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG01978.hp1 HG02145.hp2 HG02451.hp2 HG01978.hp1 HG02145.hp2 HG02451.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0001 a0001c0002t0001 a0001c0001t0001 a0001c0002t0001	a0001c0001t0001g0103 a0001c0001t0001g0120 a0001c0002t0001g0156 a0001c0001t0001g0103 a0001c0001t0001g0120 a0001c0002t0001g0156	3	260	0.0115	30	c.239 others(51): Show c.2392-32317_2392-32316insTATATATATATATATATATATATA TATATA	PCDHA11	ENSG00000249158.7	transcript	ENST00000398640.7	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA11_chr5_140863957_141017347	140946631	T T	TATATATA others(23): Show TATATATATATATATATATATATATATACAC	intron_variant intron_variant	MODIFIER	HG01884.hp1 HG02486.hp1 HG02970.hp2 others(1): Show HG01884.hp1 HG02486.hp1 HG02970.hp2 HG03516.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0003 a0001c0002t0001 a0001c0001t0003 a0001c0002t0001	a0001c0001t0003g0008 a0001c0001t0003g0254 a0001c0002t0001g0159 others(1): Show a0001c0001t0003g0008 a0001c0001t0003g0254 a0001c0002t0001g0159 a0001c0002t0001g0160	4	260	0.0154	30	c.239 others(51): Show c.2392-32317_2392-32316insTATATATATATATATATATATATA TACACA	PCDHA11	ENSG00000249158.7	transcript	ENST00000398640.7	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA11_chr5_140863957_141017347	140946631	T T	TATATATA others(23): Show TATATATATATATATATATATATATATATAC	intron_variant intron_variant	MODIFIER	NA19240.hp1 NA19240.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0121 a0001c0001t0001g0121	1	260	0.0039	30	c.239 others(51): Show c.2392-32317_2392-32316insTATATATATATATATATATATATA TATACA	PCDHA11	ENSG00000249158.7	transcript	ENST00000398640.7	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA12_chr5_140870308_141017347	140946611	A A	AATATATA others(23): Show AATATATATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG01978.hp1 HG02145.hp1 HG02451.hp1 HG01978.hp1 HG02145.hp1 HG02451.hp1	a0001 a0005 a0001 a0005	a0001c0001 a0005c0007 a0001c0001 a0005c0007	a0001c0001t0001 a0005c0007t0001 a0001c0001t0001 a0005c0007t0001	a0001c0001t0001g0109 a0001c0001t0001g0250 a0005c0007t0001g0134 a0001c0001t0001g0109 a0001c0001t0001g0250 a0005c0007t0001g0134	3	260	0.0115	30	c.236 others(51): Show c.2368-32317_2368-32316insTATATATATATATATATATATATA TATATA	PCDHA12	ENSG00000251664.5	transcript	ENST00000398631.3	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA12_chr5_140870308_141017347	140946631	T T	TATATATA others(23): Show TATATATATATATATATATATATATATACAC	intron_variant intron_variant	MODIFIER	HG01884.hp1 HG02486.hp2 HG02970.hp2 others(1): Show HG01884.hp1 HG02486.hp2 HG02970.hp2 HG03516.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0003 a0001c0002t0001 a0001c0001t0003 a0001c0002t0001	a0001c0001t0003g0002 a0001c0001t0003g0029 a0001c0002t0001g0128 others(1): Show a0001c0001t0003g0002 a0001c0001t0003g0029 a0001c0002t0001g0128 a0001c0002t0001g0129	4	260	0.0154	30	c.236 others(51): Show c.2368-32317_2368-32316insTATATATATATATATATATATATA TACACA	PCDHA12	ENSG00000251664.5	transcript	ENST00000398631.3	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA12_chr5_140870308_141017347	140946631	T T	TATATATA others(23): Show TATATATATATATATATATATATATATATAC	intron_variant intron_variant	MODIFIER	NA19240.hp2 NA19240.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0111 a0001c0001t0001g0111	1	260	0.0039	30	c.236 others(51): Show c.2368-32317_2368-32316insTATATATATATATATATATATATA TATACA	PCDHA12	ENSG00000251664.5	transcript	ENST00000398631.3	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA13_chr5_140877124_141017347	140946611	A A	AATATATA others(23): Show AATATATATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG01978.hp1 HG02145.hp2 HG02451.hp2 HG01978.hp1 HG02145.hp2 HG02451.hp2	a0001 a0001	a0001c0001 a0001c0003 a0001c0001 a0001c0003	a0001c0001t0001 a0001c0003t0001 a0001c0001t0001 a0001c0003t0001	a0001c0001t0001g0118 a0001c0001t0001g0139 a0001c0003t0001g0256 a0001c0001t0001g0118 a0001c0001t0001g0139 a0001c0003t0001g0256	3	260	0.0115	30	c.239 others(51): Show c.2395-32317_2395-32316insTATATATATATATATATATATATA TATATA	PCDHA13	ENSG00000239389.8	transcript	ENST00000289272.3	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA13_chr5_140877124_141017347	140946631	T T	TATATATA others(23): Show TATATATATATATATATATATATATATACAC	intron_variant intron_variant	MODIFIER	HG01884.hp2 HG02486.hp1 HG02970.hp1 others(1): Show HG01884.hp2 HG02486.hp1 HG02970.hp1 HG03516.hp2	a0001 a0001	a0001c0002 a0001c0004 a0001c0002 a0001c0004	a0001c0002t0003 a0001c0004t0001 a0001c0002t0003 a0001c0004t0001	a0001c0002t0003g0026 a0001c0002t0003g0077 a0001c0004t0001g0141 others(1): Show a0001c0002t0003g0026 a0001c0002t0003g0077 a0001c0004t0001g0141 a0001c0004t0001g0142	4	260	0.0154	30	c.239 others(51): Show c.2395-32317_2395-32316insTATATATATATATATATATATATA TACACA	PCDHA13	ENSG00000239389.8	transcript	ENST00000289272.3	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA13_chr5_140877124_141017347	140946631	T T	TATATATA others(23): Show TATATATATATATATATATATATATATATAC	intron_variant intron_variant	MODIFIER	NA19240.hp1 NA19240.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0120 a0001c0001t0001g0120	1	260	0.0039	30	c.239 others(51): Show c.2395-32317_2395-32316insTATATATATATATATATATATATA TATACA	PCDHA13	ENSG00000239389.8	transcript	ENST00000289272.3	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA1_chr5_140781140_141017347	140946611	A A	AATATATA others(23): Show AATATATATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG01978.hp1 HG02145.hp2 HG02451.hp2 HG01978.hp1 HG02145.hp2 HG02451.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0010 a0001c0001t0001g0070 a0001c0001t0001g0095 a0001c0001t0001g0010 a0001c0001t0001g0070 a0001c0001t0001g0095	3	200	0.0150	30	c.239 others(51): Show c.2395-32317_2395-32316insTATATATATATATATATATATATA TATATA	PCDHA1	ENSG00000204970.10	transcript	ENST00000504120.4	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA1_chr5_140781140_141017347	140946631	T T	TATATATA others(23): Show TATATATATATATATATATATATATATACAC	intron_variant intron_variant	MODIFIER	HG01884.hp1 HG02486.hp1 HG02970.hp1 others(1): Show HG01884.hp1 HG02486.hp1 HG02970.hp1 HG03516.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0002c0002 a0001c0001 a0002c0002	a0001c0001t0003 a0002c0002t0001 a0002c0002t0003 a0001c0001t0003 a0002c0002t0001 a0002c0002t0003	a0001c0001t0003g0086 a0002c0002t0001g0162 a0002c0002t0001g0163 others(1): Show a0001c0001t0003g0086 a0002c0002t0001g0162 a0002c0002t0001g0163 a0002c0002t0003g0181	4	200	0.0200	30	c.239 others(51): Show c.2395-32317_2395-32316insTATATATATATATATATATATATA TACACA	PCDHA1	ENSG00000204970.10	transcript	ENST00000504120.4	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA1_chr5_140781140_141017347	140946631	T T	TATATATA others(23): Show TATATATATATATATATATATATATATATAC	intron_variant intron_variant	MODIFIER	NA19240.hp1 NA19240.hp1	a0001 a0001	a0001c0005 a0001c0005	a0001c0005t0001 a0001c0005t0001	a0001c0005t0001g0093 a0001c0005t0001g0093	1	200	0.0050	30	c.239 others(51): Show c.2395-32317_2395-32316insTATATATATATATATATATATATA TATACA	PCDHA1	ENSG00000204970.10	transcript	ENST00000504120.4	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA2_chr5_140789852_141017347	140946611	A A	AATATATA others(23): Show AATATATATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG01978.hp2 HG02145.hp1 HG02451.hp2 HG01978.hp2 HG02145.hp1 HG02451.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0005 a0001c0001t0001g0077 a0001c0001t0001g0097 a0001c0001t0001g0005 a0001c0001t0001g0077 a0001c0001t0001g0097	3	202	0.0149	30	c.238 others(51): Show c.2389-32317_2389-32316insTATATATATATATATATATATATA TATATA	PCDHA2	ENSG00000204969.7	transcript	ENST00000526136.2	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA2_chr5_140789852_141017347	140946631	T T	TATATATA others(23): Show TATATATATATATATATATATATATATACAC	intron_variant intron_variant	MODIFIER	HG01884.hp2 HG02486.hp1 HG02970.hp1 others(1): Show HG01884.hp2 HG02486.hp1 HG02970.hp1 HG03516.hp2	a0001 a0002 a0003 a0001 a0002 a0003	a0001c0001 a0002c0002 a0003c0004 a0001c0001 a0002c0002 a0003c0004	a0001c0001t0003 a0002c0002t0001 a0003c0004t0003 a0001c0001t0003 a0002c0002t0001 a0003c0004t0003	a0001c0001t0003g0198 a0002c0002t0001g0177 a0002c0002t0001g0178 others(1): Show a0001c0001t0003g0198 a0002c0002t0001g0177 a0002c0002t0001g0178 a0003c0004t0003g0079	4	202	0.0198	30	c.238 others(51): Show c.2389-32317_2389-32316insTATATATATATATATATATATATA TACACA	PCDHA2	ENSG00000204969.7	transcript	ENST00000526136.2	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA2_chr5_140789852_141017347	140946631	T T	TATATATA others(23): Show TATATATATATATATATATATATATATATAC	intron_variant intron_variant	MODIFIER	NA19240.hp2 NA19240.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0087 a0001c0001t0001g0087	1	202	0.0050	30	c.238 others(51): Show c.2389-32317_2389-32316insTATATATATATATATATATATATA TATACA	PCDHA2	ENSG00000204969.7	transcript	ENST00000526136.2	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA3_chr5_140796057_141017347	140946611	A A	AATATATA others(23): Show AATATATATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG01978.hp1 HG02145.hp1 HG02451.hp1 HG01978.hp1 HG02145.hp1 HG02451.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0017 a0001c0001t0001g0024 a0001c0001t0001g0093 a0001c0001t0001g0017 a0001c0001t0001g0024 a0001c0001t0001g0093	3	208	0.0144	30	c.239 others(51): Show c.2395-32317_2395-32316insTATATATATATATATATATATATA TATATA	PCDHA3	ENSG00000255408.4	transcript	ENST00000522353.3	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA3_chr5_140796057_141017347	140946631	T T	TATATATA others(23): Show TATATATATATATATATATATATATATACAC	intron_variant intron_variant	MODIFIER	HG01884.hp1 HG02486.hp2 HG02970.hp1 others(1): Show HG01884.hp1 HG02486.hp2 HG02970.hp1 HG03516.hp2	a0001 a0002 a0003 a0001 a0002 a0003	a0001c0001 a0002c0002 a0003c0004 a0001c0001 a0002c0002 a0003c0004	a0001c0001t0003 a0002c0002t0002 a0003c0004t0003 a0001c0001t0003 a0002c0002t0002 a0003c0004t0003	a0001c0001t0003g0007 a0002c0002t0002g0178 a0002c0002t0002g0179 others(1): Show a0001c0001t0003g0007 a0002c0002t0002g0178 a0002c0002t0002g0179 a0003c0004t0003g0104	4	208	0.0192	30	c.239 others(51): Show c.2395-32317_2395-32316insTATATATATATATATATATATATA TACACA	PCDHA3	ENSG00000255408.4	transcript	ENST00000522353.3	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA3_chr5_140796057_141017347	140946631	T T	TATATATA others(23): Show TATATATATATATATATATATATATATATAC	intron_variant intron_variant	MODIFIER	NA19240.hp1 NA19240.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0002 a0001c0001t0001g0002	1	208	0.0048	30	c.239 others(51): Show c.2395-32317_2395-32316insTATATATATATATATATATATATA TATACA	PCDHA3	ENSG00000255408.4	transcript	ENST00000522353.3	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA4_chr5_140802068_141017347	140946611	A A	AATATATA others(23): Show AATATATATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG01978.hp1 HG02145.hp2 HG02451.hp2 HG01978.hp1 HG02145.hp2 HG02451.hp2	a0003 a0005 a0003 a0005	a0003c0003 a0005c0005 a0003c0003 a0005c0005	a0003c0003t0001 a0005c0005t0001 a0003c0003t0001 a0005c0005t0001	a0003c0003t0001g0014 a0003c0003t0001g0077 a0005c0005t0001g0089 a0003c0003t0001g0014 a0003c0003t0001g0077 a0005c0005t0001g0089	3	212	0.0142	30	c.238 others(51): Show c.2386-32317_2386-32316insTATATATATATATATATATATATA TATATA	PCDHA4	ENSG00000204967.13	transcript	ENST00000530339.2	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA4_chr5_140802068_141017347	140946631	T T	TATATATA others(23): Show TATATATATATATATATATATATATATACAC	intron_variant intron_variant	MODIFIER	HG01884.hp1 HG02486.hp2 HG02970.hp1 others(1): Show HG01884.hp1 HG02486.hp2 HG02970.hp1 HG03516.hp1	a0001 a0003 a0006 a0001 a0003 a0006	a0001c0001 a0003c0003 a0006c0006 a0001c0001 a0003c0003 a0006c0006	a0001c0001t0002 a0003c0003t0003 a0006c0006t0003 a0001c0001t0002 a0003c0003t0003 a0006c0006t0003	a0001c0001t0002g0189 a0001c0001t0002g0190 a0003c0003t0003g0009 others(1): Show a0001c0001t0002g0189 a0001c0001t0002g0190 a0003c0003t0003g0009 a0006c0006t0003g0208	4	212	0.0189	30	c.238 others(51): Show c.2386-32317_2386-32316insTATATATATATATATATATATATA TACACA	PCDHA4	ENSG00000204967.13	transcript	ENST00000530339.2	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA4_chr5_140802068_141017347	140946631	T T	TATATATA others(23): Show TATATATATATATATATATATATATATATAC	intron_variant intron_variant	MODIFIER	NA19240.hp1 NA19240.hp1	a0003 a0003	a0003c0003 a0003c0003	a0003c0003t0001 a0003c0003t0001	a0003c0003t0001g0001 a0003c0003t0001g0001	1	212	0.0047	30	c.238 others(51): Show c.2386-32317_2386-32316insTATATATATATATATATATATATA TATACA	PCDHA4	ENSG00000204967.13	transcript	ENST00000530339.2	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA5_chr5_140816613_141017347	140946611	A A	AATATATA others(23): Show AATATATATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG01978.hp2 HG02145.hp1 HG02451.hp2 HG01978.hp2 HG02145.hp1 HG02451.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0048 a0001c0001t0001g0177 a0001c0001t0001g0216 a0001c0001t0001g0048 a0001c0001t0001g0177 a0001c0001t0001g0216	3	220	0.0136	30	c.235 others(51): Show c.2353-32317_2353-32316insTATATATATATATATATATATATA TATATA	PCDHA5	ENSG00000204965.9	transcript	ENST00000529859.2	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA5_chr5_140816613_141017347	140946631	T T	TATATATA others(23): Show TATATATATATATATATATATATATATACAC	intron_variant intron_variant	MODIFIER	HG01884.hp2 HG02486.hp1 HG02970.hp1 others(1): Show HG01884.hp2 HG02486.hp1 HG02970.hp1 HG03516.hp1	a0001 a0004 a0005 a0001 a0004 a0005	a0001c0001 a0004c0008 a0005c0005 a0001c0001 a0004c0008 a0005c0005	a0001c0001t0025 a0004c0008t0002 a0005c0005t0005 a0001c0001t0025 a0004c0008t0002 a0005c0005t0005	a0001c0001t0025g0052 a0004c0008t0002g0065 a0004c0008t0002g0083 others(1): Show a0001c0001t0025g0052 a0004c0008t0002g0065 a0004c0008t0002g0083 a0005c0005t0005g0169	4	220	0.0182	30	c.235 others(51): Show c.2353-32317_2353-32316insTATATATATATATATATATATATA TACACA	PCDHA5	ENSG00000204965.9	transcript	ENST00000529859.2	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA5_chr5_140816613_141017347	140946631	T T	TATATATA others(23): Show TATATATATATATATATATATATATATATAC	intron_variant intron_variant	MODIFIER	NA19240.hp1 NA19240.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0114 a0001c0001t0001g0114	1	220	0.0046	30	c.235 others(51): Show c.2353-32317_2353-32316insTATATATATATATATATATATATA TATACA	PCDHA5	ENSG00000204965.9	transcript	ENST00000529859.2	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA6_chr5_140822960_141017347	140946611	A A	AATATATA others(23): Show AATATATATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG01978.hp2 HG02145.hp1 HG02451.hp2 HG01978.hp2 HG02145.hp1 HG02451.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0002c0003 a0001c0001 a0002c0003	a0001c0001t0001 a0002c0003t0001 a0001c0001t0001 a0002c0003t0001	a0001c0001t0001g0032 a0001c0001t0001g0077 a0002c0003t0001g0001 a0001c0001t0001g0032 a0001c0001t0001g0077 a0002c0003t0001g0001	3	236	0.0127	30	c.239 others(51): Show c.2395-32317_2395-32316insTATATATATATATATATATATATA TATATA	PCDHA6	ENSG00000081842.18	transcript	ENST00000529310.6	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA6_chr5_140822960_141017347	140946631	T T	TATATATA others(23): Show TATATATATATATATATATATATATATACAC	intron_variant intron_variant	MODIFIER	HG01884.hp1 HG02486.hp1 HG02970.hp2 others(1): Show HG01884.hp1 HG02486.hp1 HG02970.hp2 HG03516.hp1	a0001 a0002 a0004 a0001 a0002 a0004	a0001c0002 a0002c0003 a0004c0005 a0001c0002 a0002c0003 a0004c0005	a0001c0002t0001 a0002c0003t0003 a0004c0005t0003 a0001c0002t0001 a0002c0003t0003 a0004c0005t0003	a0001c0002t0001g0178 a0001c0002t0001g0233 a0002c0003t0003g0015 others(1): Show a0001c0002t0001g0178 a0001c0002t0001g0233 a0002c0003t0003g0015 a0004c0005t0003g0126	4	236	0.0170	30	c.239 others(51): Show c.2395-32317_2395-32316insTATATATATATATATATATATATA TACACA	PCDHA6	ENSG00000081842.18	transcript	ENST00000529310.6	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA6_chr5_140822960_141017347	140946631	T T	TATATATA others(23): Show TATATATATATATATATATATATATATATAC	intron_variant intron_variant	MODIFIER	NA19240.hp2 NA19240.hp2	a0002 a0002	a0002c0003 a0002c0003	a0002c0003t0001 a0002c0003t0001	a0002c0003t0001g0013 a0002c0003t0001g0013	1	236	0.0042	30	c.239 others(51): Show c.2395-32317_2395-32316insTATATATATATATATATATATATA TATACA	PCDHA6	ENSG00000081842.18	transcript	ENST00000529310.6	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA7_chr5_140829269_141017347	140946611	A A	AATATATA others(23): Show AATATATATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG01978.hp1 HG02145.hp1 HG02451.hp1 HG01978.hp1 HG02145.hp1 HG02451.hp1	a0002 a0002	a0002c0001 a0002c0001	a0002c0001t0001 a0002c0001t0001	a0002c0001t0001g0023 a0002c0001t0001g0061 a0002c0001t0001g0099 a0002c0001t0001g0023 a0002c0001t0001g0061 a0002c0001t0001g0099	3	248	0.0121	30	c.235 others(51): Show c.2356-32317_2356-32316insTATATATATATATATATATATATA TATATA	PCDHA7	ENSG00000204963.6	transcript	ENST00000525929.2	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA7_chr5_140829269_141017347	140946631	T T	TATATATA others(23): Show TATATATATATATATATATATATATATACAC	intron_variant intron_variant	MODIFIER	HG01884.hp2 HG02486.hp1 HG02970.hp1 others(1): Show HG01884.hp2 HG02486.hp1 HG02970.hp1 HG03516.hp2	a0001 a0004 a0018 a0001 a0004 a0018	a0001c0002 a0004c0005 a0018c0026 a0001c0002 a0004c0005 a0018c0026	a0001c0002t0001 a0004c0005t0003 a0018c0026t0003 a0001c0002t0001 a0004c0005t0003 a0018c0026t0003	a0001c0002t0001g0179 a0001c0002t0001g0198 a0004c0005t0003g0104 others(1): Show a0001c0002t0001g0179 a0001c0002t0001g0198 a0004c0005t0003g0104 a0018c0026t0003g0137	4	248	0.0161	30	c.235 others(51): Show c.2356-32317_2356-32316insTATATATATATATATATATATATA TACACA	PCDHA7	ENSG00000204963.6	transcript	ENST00000525929.2	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA7_chr5_140829269_141017347	140946631	T T	TATATATA others(23): Show TATATATATATATATATATATATATATATAC	intron_variant intron_variant	MODIFIER	NA19240.hp2 NA19240.hp2	a0002 a0002	a0002c0011 a0002c0011	a0002c0011t0001 a0002c0011t0001	a0002c0011t0001g0076 a0002c0011t0001g0076	1	248	0.0040	30	c.235 others(51): Show c.2356-32317_2356-32316insTATATATATATATATATATATATA TATACA	PCDHA7	ENSG00000204963.6	transcript	ENST00000525929.2	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA8_chr5_140836187_141017347	140946611	A A	AATATATA others(23): Show AATATATATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG01978.hp1 HG02145.hp1 HG02451.hp1 HG01978.hp1 HG02145.hp1 HG02451.hp1	a0003 a0004 a0005 a0003 a0004 a0005	a0003c0003 a0004c0004 a0005c0005 a0003c0003 a0004c0004 a0005c0005	a0003c0003t0001 a0004c0004t0001 a0005c0005t0001 a0003c0003t0001 a0004c0004t0001 a0005c0005t0001	a0003c0003t0001g0018 a0004c0004t0001g0153 a0005c0005t0001g0010 a0003c0003t0001g0018 a0004c0004t0001g0153 a0005c0005t0001g0010	3	258	0.0116	30	c.239 others(51): Show c.2395-32317_2395-32316insTATATATATATATATATATATATA TATATA	PCDHA8	ENSG00000204962.6	transcript	ENST00000531613.2	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA8_chr5_140836187_141017347	140946631	T T	TATATATA others(23): Show TATATATATATATATATATATATATATACAC	intron_variant intron_variant	MODIFIER	HG01884.hp2 HG02486.hp1 HG02970.hp2 others(1): Show HG01884.hp2 HG02486.hp1 HG02970.hp2 HG03516.hp1	a0001 a0003 a0007 a0001 a0003 a0007	a0001c0001 a0003c0003 a0007c0007 a0001c0001 a0003c0003 a0007c0007	a0001c0001t0001 a0003c0003t0003 a0007c0007t0003 a0001c0001t0001 a0003c0003t0003 a0007c0007t0003	a0001c0001t0001g0107 a0001c0001t0001g0116 a0003c0003t0003g0020 others(1): Show a0001c0001t0001g0107 a0001c0001t0001g0116 a0003c0003t0003g0020 a0007c0007t0003g0138	4	258	0.0155	30	c.239 others(51): Show c.2395-32317_2395-32316insTATATATATATATATATATATATA TACACA	PCDHA8	ENSG00000204962.6	transcript	ENST00000531613.2	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA8_chr5_140836187_141017347	140946631	T T	TATATATA others(23): Show TATATATATATATATATATATATATATATAC	intron_variant intron_variant	MODIFIER	NA19240.hp1 NA19240.hp1	a0003 a0003	a0003c0003 a0003c0003	a0003c0003t0001 a0003c0003t0001	a0003c0003t0001g0024 a0003c0003t0001g0024	1	258	0.0039	30	c.239 others(51): Show c.2395-32317_2395-32316insTATATATATATATATATATATATA TATACA	PCDHA8	ENSG00000204962.6	transcript	ENST00000531613.2	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA9_chr5_140843382_141017347	140946611	A A	AATATATA others(23): Show AATATATATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG01978.hp2 HG02145.hp1 HG02451.hp2 HG01978.hp2 HG02145.hp1 HG02451.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0001c0005 a0002c0002 a0001c0001 a0001c0005 a0002c0002	a0001c0001t0001 a0001c0005t0001 a0002c0002t0001 a0001c0001t0001 a0001c0005t0001 a0002c0002t0001	a0001c0001t0001g0148 a0001c0005t0001g0210 a0002c0002t0001g0118 a0001c0001t0001g0148 a0001c0005t0001g0210 a0002c0002t0001g0118	3	256	0.0117	30	c.239 others(51): Show c.2395-32317_2395-32316insTATATATATATATATATATATATA TATATA	PCDHA9	ENSG00000204961.7	transcript	ENST00000532602.2	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA9_chr5_140843382_141017347	140946631	T T	TATATATA others(23): Show TATATATATATATATATATATATATATACAC	intron_variant intron_variant	MODIFIER	HG01884.hp2 HG02486.hp2 HG02970.hp1 others(1): Show HG01884.hp2 HG02486.hp2 HG02970.hp1 HG03516.hp2	a0003 a0005 a0013 a0003 a0005 a0013	a0003c0004 a0005c0006 a0013c0017 a0003c0004 a0005c0006 a0013c0017	a0003c0004t0003 a0005c0006t0003 a0013c0017t0001 a0003c0004t0003 a0005c0006t0003 a0013c0017t0001	a0003c0004t0003g0049 a0005c0006t0003g0254 a0013c0017t0001g0036 others(1): Show a0003c0004t0003g0049 a0005c0006t0003g0254 a0013c0017t0001g0036 a0013c0017t0001g0037	4	256	0.0156	30	c.239 others(51): Show c.2395-32317_2395-32316insTATATATATATATATATATATATA TACACA	PCDHA9	ENSG00000204961.7	transcript	ENST00000532602.2	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA9_chr5_140843382_141017347	140946631	T T	TATATATA others(23): Show TATATATATATATATATATATATATATATAC	intron_variant intron_variant	MODIFIER	NA19240.hp2 NA19240.hp2	a0012 a0012	a0012c0012 a0012c0012	a0012c0012t0010 a0012c0012t0010	a0012c0012t0010g0228 a0012c0012t0010g0228	1	256	0.0039	30	c.239 others(51): Show c.2395-32317_2395-32316insTATATATATATATATATATATATA TATACA	PCDHA9	ENSG00000204961.7	transcript	ENST00000532602.2	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHAC1_chr5_140921299_141017347	140946611	A A	AATATATA others(23): Show AATATATATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG01978.hp2 HG02145.hp2 HG02451.hp2 HG01978.hp2 HG02145.hp2 HG02451.hp2	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0002 a0001c0003t0008 a0001c0003t0002 a0001c0003t0008	a0001c0003t0002g0241 a0001c0003t0002g0278 a0001c0003t0008g0240 a0001c0003t0002g0241 a0001c0003t0002g0278 a0001c0003t0008g0240	3	280	0.0107	30	c.243 others(51): Show c.2433+17307_2433+17308insTATATATATATATATATATATATA TATATA	PCDHAC1	ENSG00000248383.5	transcript	ENST00000253807.3	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHAC1_chr5_140921299_141017347	140946631	T T	TATATATA others(23): Show TATATATATATATATATATATATATATACAC	intron_variant intron_variant	MODIFIER	HG01884.hp2 HG02486.hp1 HG02970.hp1 others(1): Show HG01884.hp2 HG02486.hp1 HG02970.hp1 HG03516.hp2	a0001 a0001	a0001c0002 a0001c0007 a0001c0002 a0001c0007	a0001c0002t0005 a0001c0007t0001 a0001c0002t0005 a0001c0007t0001	a0001c0002t0005g0206 a0001c0002t0005g0210 a0001c0007t0001g0195 others(1): Show a0001c0002t0005g0206 a0001c0002t0005g0210 a0001c0007t0001g0195 a0001c0007t0001g0196	4	280	0.0143	30	c.243 others(51): Show c.2433+17307_2433+17308insTATATATATATATATATATATATA TACACA	PCDHAC1	ENSG00000248383.5	transcript	ENST00000253807.3	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHAC1_chr5_140921299_141017347	140946631	T T	TATATATA others(23): Show TATATATATATATATATATATATATATATAC	intron_variant intron_variant	MODIFIER	NA19240.hp2 NA19240.hp2	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0001 a0001c0003t0001	a0001c0003t0001g0215 a0001c0003t0001g0215	1	280	0.0036	30	c.243 others(51): Show c.2433+17307_2433+17308insTATATATATATATATATATATATA TATACA	PCDHAC1	ENSG00000248383.5	transcript	ENST00000253807.3	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHB11_chr5_141194627_141208779	141204212	C C	CAAAAAAA others(23): Show CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	downstream_gene_variant downstream_gene_variant	MODIFIER	NA18522.hp2 NA18522.hp2	a0005 a0005	a0005c0007 a0005c0007	a0005c0007t0009 a0005c0007t0009	a0005c0007t0009g0000 a0005c0007t0009g0000	1	444	0.0023	30	c.20 others(41): Show c.2044_*2045insAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	PCDHB11	ENSG00000197479.7	transcript	ENST00000354757.5	protein_coding		434		chr5	TogoVar
PCDHB12_chr5_141203719_141217571	141204212	C C	CAAAAAAA others(23): Show CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	upstream_gene_variant upstream_gene_variant	MODIFIER	NA18522.hp2 NA18522.hp2	a0002 a0002	a0002c0014 a0002c0014	a0002c0014t0006 a0002c0014t0006	a0002c0014t0006g0000 a0002c0014t0006g0000	1	432	0.0023	30	c.-46 others(41): Show c.-4696_-4695insAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	PCDHB12	ENSG00000120328.6	transcript	ENST00000239450.4	protein_coding		4506		chr5	TogoVar
PCDHB13_chr5_141208919_141223979	141221429	G G	GTATATAT others(23): Show GTATATATATATATATATATATATATATATA	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01978.hp2 HG02615.hp1 HG02965.hp1 others(3): Show HG01978.hp2 HG02615.hp1 HG02965.hp1 HG03486.hp2 HG04184.hp1 NA19012.hp2	a0003 a0004 a0008 others(1): Show a0003 a0004 a0008 a0010	a0003c0003 a0003c0029 a0004c0005 others(2): Show a0003c0003 a0003c0029 a0004c0005 a0008c0010 a0010c0013	a0003c0003t0003 a0003c0029t0003 a0004c0005t0023 others(2): Show a0003c0003t0003 a0003c0029t0003 a0004c0005t0023 a0008c0010t0011 a0010c0013t0011	a0003c0003t0003g0000 a0003c0029t0003g0000 a0004c0005t0023g0000 others(2): Show a0003c0003t0003g0000 a0003c0029t0003g0000 a0004c0005t0023g0000 a0008c0010t0011g0000 a0010c0013t0011g0000	6	428	0.0140	30	c.49 others(41): Show c.4909_*4910insTATATATATATATATATATATATATATATA	PCDHB13	ENSG00000187372.11	transcript	ENST00000341948.6	protein_coding		2451		chr5	TogoVar
PCDHB13_chr5_141208919_141223979	141221429	G G	GTGTATAT others(23): Show GTGTATATATATATATATATATATATATATA	downstream_gene_variant downstream_gene_variant	MODIFIER	NA19030.hp1 NA19030.hp1	a0009 a0009	a0009c0015 a0009c0015	a0009c0015t0003 a0009c0015t0003	a0009c0015t0003g0000 a0009c0015t0003g0000	1	428	0.0023	30	c.49 others(41): Show c.4909_*4910insTGTATATATATATATATATATATATATATA	PCDHB13	ENSG00000187372.11	transcript	ENST00000341948.6	protein_coding		2451		chr5	TogoVar
PCDHB13_chr5_141208919_141223979	141221511	G G	GTATATAT others(23): Show GTATATATGCTATATATATGCTCTCTCTATA	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02486.hp1 HG02572.hp2 HG02647.hp2 others(1): Show HG02486.hp1 HG02572.hp2 HG02647.hp2 HG02922.hp2	a0007 a0007	a0007c0008 a0007c0008	a0007c0008t0007 a0007c0008t0014 a0007c0008t0007 a0007c0008t0014	a0007c0008t0007g0000 a0007c0008t0014g0000 a0007c0008t0007g0000 a0007c0008t0014g0000	4	428	0.0094	30	c.49 others(41): Show c.4991_*4992insTATATATGCTATATATATGCTCTCTCTATA	PCDHB13	ENSG00000187372.11	transcript	ENST00000341948.6	protein_coding		2533		chr5	TogoVar
PCDHB14_chr5_141218343_141232759	141221429	G G	GTATATAT others(23): Show GTATATATATATATATATATATATATATATA	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01952.hp1 HG01978.hp1 HG02615.hp2 others(4): Show HG01952.hp1 HG01978.hp1 HG02615.hp2 HG02965.hp1 HG03486.hp2 HG04184.hp1 NA19012.hp2	a0001 a0006 a0001 a0006	a0001c0004 a0006c0009 a0001c0004 a0006c0009	a0001c0004t0004 a0001c0004t0023 a0006c0009t0005 a0001c0004t0004 a0001c0004t0023 a0006c0009t0005	a0001c0004t0004g0000 a0001c0004t0023g0000 a0006c0009t0005g0000 a0001c0004t0004g0000 a0001c0004t0023g0000 a0006c0009t0005g0000	7	448	0.0156	30	c.-20 others(41): Show c.-2077_-2076insTATATATATATATATATATATATATATATA	PCDHB14	ENSG00000120327.7	transcript	ENST00000239449.7	protein_coding		1913		chr5	TogoVar

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