Joint Open Genome and Omics Platform (JoGo)

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Snpeff annotation impact detail

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view	regionname	pos	ref	alt	annotation	impact	samples	ahapids	chapids	thapids	thapids	ac	an	af	len	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	distance	status	chr	external
	ZPBP_chr7_49932441_50098246	49981686	A A	ATGATATA others(24): Show ATGATATATTATATAATATCTTGATATAAAAT	intron_variant intron_variant	MODIFIER	HG04184.hp1 HG04184.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0207 a0001c0001t0001g0207	1	236	0.0042	31	c.961 others(48): Show c.961+1655_961+1656insATTTTATATCAAGATATTATATAATATA TCA		ZPBP	ENSG00000042813.8	transcript	ENST00000046087.7	protein_coding	7/7						chr7	TogoVar
	ZRANB3_chr2_135191969_135536218	135245926	C C	CAAAAAAA others(24): Show CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG01433.hp2 HG03017.hp2 HG03139.hp2 others(2): Show HG01433.hp2 HG03017.hp2 HG03139.hp2 HG03834.hp2 NA18969.hp2	a0001 a0001	a0001c0001 a0001c0005 a0001c0001 a0001c0005	a0001c0001t0001 a0001c0001t0023 a0001c0005t0004 a0001c0001t0001 a0001c0001t0023 a0001c0005t0004	a0001c0001t0001g0087 a0001c0001t0001g0088 a0001c0001t0001g0158 others(2): Show a0001c0001t0001g0087 a0001c0001t0001g0088 a0001c0001t0001g0158 a0001c0001t0023g0172 a0001c0005t0004g0089	5	20	0.2500	31	c.154 others(52): Show c.1540-15000_1540-14999insTTTTTTTTTTTTTTTTTTTTTTTT TTTTTTT		ZRANB3	ENSG00000121988.18	transcript	ENST00000264159.11	protein_coding	12/20						chr2	TogoVar
	ZRANB3_chr2_135191969_135536218	135272414	C C	CTTTTTTT others(24): Show CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG03688.hp1 NA18967.hp2 NA19001.hp2 others(1): Show HG03688.hp1 NA18967.hp2 NA19001.hp2 NA19007.hp2	a0003 a0003	a0003c0004 a0003c0004	a0003c0004t0002 a0003c0004t0002	a0003c0004t0002g0040 a0003c0004t0002g0044 a0003c0004t0002g0049 others(1): Show a0003c0004t0002g0040 a0003c0004t0002g0044 a0003c0004t0002g0049 a0003c0004t0002g0052	4	75	0.0533	31	c.108 others(48): Show c.1087-528_1087-527insAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAA		ZRANB3	ENSG00000121988.18	transcript	ENST00000264159.11	protein_coding	9/20						chr2	TogoVar
	ZSCAN21_chr7_100044774_100070040	100051178	C C	CAAAAAAA others(24): Show CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG00280.hp1 HG00741.hp1 HG00280.hp1 HG00741.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0200 a0001c0001t0003g0201 a0001c0001t0003g0200 a0001c0001t0003g0201	2	59	0.0339	31	c.-97 others(48): Show c.-97+1362_-97+1363insAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAA		ZSCAN21	ENSG00000166529.16	transcript	ENST00000292450.9	protein_coding	1/3					INFO_REALIGN_3_PRIME	chr7	TogoVar
	ZSCAN21_chr7_100044774_100070040	100067037	C C	CAAAAAAA others(24): Show CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02451.hp2 HG02451.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0269 a0001c0001t0002g0269	1	387	0.0026	31	c.24 others(42): Show c.2420_*2421insAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA		ZSCAN21	ENSG00000166529.16	transcript	ENST00000292450.9	protein_coding					1998		chr7	TogoVar
	ZSWIM5_chr1_45011399_45211605	45044746	A A	AAAAAAAA others(24): Show AAAAAAAAAAAAAAAAAAAAAAAAAAATATAT	intron_variant intron_variant	MODIFIER	NA20752.hp1 NA20752.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0155 a0001c0001t0001g0155	1	131	0.0076	31	c.143 others(50): Show c.1433-1352_1433-1351insATATATTTTTTTTTTTTTTTTTTTTT TTTTT		ZSWIM5	ENSG00000162415.7	transcript	ENST00000359600.6	protein_coding	5/13						chr1	TogoVar
	ZSWIM9_chr19_48165680_48202620	48187429	T T	TTATATAT others(24): Show TTATATATATTATATATTATATATTAATTATA	intron_variant intron_variant	MODIFIER	NA19083.hp2 NA19091.hp2 NA19083.hp2 NA19091.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0165 a0001c0001t0001g0176 a0001c0001t0001g0165 a0001c0001t0001g0176	2	386	0.0052	31	c.588 others(48): Show c.588+4667_588+4668insATATTATATATTATATATTAATTATATA TAT		ZSWIM9	ENSG00000185453.13	transcript	ENST00000614654.2	protein_coding	3/3					INFO_REALIGN_3_PRIME	chr19	TogoVar
	ZSWIM9_chr19_48165680_48202620	48187587	A A	ATATAATA others(24): Show ATATAATATAATATTATATATTATATTAATAT	intron_variant intron_variant	MODIFIER	HG02572.hp2 HG02723.hp1 HG03209.hp1 HG02572.hp2 HG02723.hp1 HG03209.hp1	a0001 a0001	a0001c0004 a0001c0004	a0001c0004t0001 a0001c0004t0001	a0001c0004t0001g0095 a0001c0004t0001g0096 a0001c0004t0001g0229 a0001c0004t0001g0095 a0001c0004t0001g0096 a0001c0004t0001g0229	3	386	0.0078	31	c.588 others(48): Show c.588+4829_588+4859dupAATATTATATATTATATTAATATTATAA TAT		ZSWIM9	ENSG00000185453.13	transcript	ENST00000614654.2	protein_coding	3/3					INFO_REALIGN_3_PRIME	chr19	TogoVar
	ZXDA_chrX_57900430_57915458	57904931	A A	ATATTATA others(24): Show ATATTATATATTATATATAAATATAAAAATAT	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01167.hp1 HG01169.hp1 HG02630.hp1 others(1): Show HG01167.hp1 HG01169.hp1 HG02630.hp1 HG03486.hp1	a0007 a0007	a0007c0010 a0007c0010	a0007c0010t0005 a0007c0010t0005	a0007c0010t0005g0000 a0007c0010t0005g0000	4	294	0.0136	31	c.30 others(42): Show c.3089_*3090insATATTTTTATATTTATATATAATATATAATA		ZXDA	ENSG00000198205.7	transcript	ENST00000358697.6	protein_coding					498		chrX	TogoVar
	ZYG11B_chr1_52721453_52832336	52773627	A A	ATATATAT others(24): Show ATATATATATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	NA19079.hp1 NA19079.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0004	a0001c0001t0004g0030 a0001c0001t0004g0030	1	156	0.0064	31	c.951 others(48): Show c.951+1854_951+1855insATATATATATATATATATATATATATAT ATT		ZYG11B	ENSG00000162378.13	transcript	ENST00000294353.7	protein_coding	3/13					INFO_REALIGN_3_PRIME	chr1	TogoVar
	ZYG11B_chr1_52721453_52832336	52776229	A A	AAAAAAAA others(24): Show AAAAAAAAAAAAAAAAAAAAATATATATATAT	intron_variant intron_variant	MODIFIER	HG02293.hp1 HG02293.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0007 a0001c0001t0007	a0001c0001t0007g0107 a0001c0001t0007g0107	1	9	0.1111	31	c.952 others(48): Show c.952-3623_952-3622insAAAAAAAAAAAAAAAAAAATATATATAT ATA		ZYG11B	ENSG00000162378.13	transcript	ENST00000294353.7	protein_coding	3/13					INFO_REALIGN_3_PRIME	chr1	TogoVar
	ZYG11B_chr1_52721453_52832336	52776229	A A	AAAAAAAA others(24): Show AAAAAAAAAAAAAAAAAAATATATATATATAT	intron_variant intron_variant	MODIFIER	HG00597.hp1 HG01071.hp2 HG01928.hp1 others(3): Show HG00597.hp1 HG01071.hp2 HG01928.hp1 HG01993.hp1 HG02683.hp2 NA18944.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0007 a0001c0001t0001 a0001c0001t0007	a0001c0001t0001g0061 a0001c0001t0001g0075 a0001c0001t0007g0108 others(3): Show a0001c0001t0001g0061 a0001c0001t0001g0075 a0001c0001t0007g0108 a0001c0001t0007g0112 a0001c0001t0007g0114 a0001c0001t0007g0115	6	14	0.4286	31	c.952 others(48): Show c.952-3623_952-3622insAAAAAAAAAAAAAAAAATATATATATAT ATA		ZYG11B	ENSG00000162378.13	transcript	ENST00000294353.7	protein_coding	3/13					INFO_REALIGN_3_PRIME	chr1	TogoVar
	ZYG11B_chr1_52721453_52832336	52776229	A A	AAAAAAAA others(24): Show AAAAAAAAAAAAAAAAATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG01978.hp1 HG04228.hp1 HG01978.hp1 HG04228.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0069 a0001c0001t0001 a0001c0001t0069	a0001c0001t0001g0257 a0001c0001t0069g0263 a0001c0001t0001g0257 a0001c0001t0069g0263	2	10	0.2000	31	c.952 others(48): Show c.952-3623_952-3622insAAAAAAAAAAAAAAATATATATATATAT ATA		ZYG11B	ENSG00000162378.13	transcript	ENST00000294353.7	protein_coding	3/13					INFO_REALIGN_3_PRIME	chr1	TogoVar
	ZYG11B_chr1_52721453_52832336	52776229	A A	AAAAAAAA others(24): Show AAAAAAAAATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG03471.hp1 HG03471.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0061 a0001c0001t0061	a0001c0001t0061g0160 a0001c0001t0061g0160	1	9	0.1111	31	c.952 others(48): Show c.952-3623_952-3622insAAAAAAATATATATATATATATATATAT ATA		ZYG11B	ENSG00000162378.13	transcript	ENST00000294353.7	protein_coding	3/13					INFO_REALIGN_3_PRIME	chr1	TogoVar
	ZYG11B_chr1_52721453_52832336	52776229	A A	AAAAAAAT others(24): Show AAAAAAATATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG01175.hp2 HG01175.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0003 a0001c0002t0003	a0001c0002t0003g0227 a0001c0002t0003g0227	1	9	0.1111	31	c.952 others(48): Show c.952-3623_952-3622insAAAAATATATATATATATATATATATAT ATA		ZYG11B	ENSG00000162378.13	transcript	ENST00000294353.7	protein_coding	3/13					INFO_REALIGN_3_PRIME	chr1	TogoVar
	ZYG11B_chr1_52721453_52832336	52776229	A A	AAAAATAT others(24): Show AAAAATATATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG00741.hp1 HG00741.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0003 a0001c0002t0003	a0001c0002t0003g0229 a0001c0002t0003g0229	1	9	0.1111	31	c.952 others(48): Show c.952-3623_952-3622insAAATATATATATATATATATATATATAT ATA		ZYG11B	ENSG00000162378.13	transcript	ENST00000294353.7	protein_coding	3/13					INFO_REALIGN_3_PRIME	chr1	TogoVar
	ZYG11B_chr1_52721453_52832336	52793901	T T	TTCCTTCC others(24): Show TTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCC	intron_variant intron_variant	MODIFIER	HG00639.hp2 HG02280.hp1 HG02647.hp2 HG00639.hp2 HG02280.hp1 HG02647.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0006 a0001c0001t0006	a0001c0001t0006g0002 a0001c0001t0006g0003 a0001c0001t0006g0187 a0001c0001t0006g0002 a0001c0001t0006g0003 a0001c0001t0006g0187	3	336	0.0089	31	c.133 others(50): Show c.1335-2390_1335-2389insCCTTCCTTCCTTCCTTCCTTCCTTCC TTCCT		ZYG11B	ENSG00000162378.13	transcript	ENST00000294353.7	protein_coding	6/13					INFO_REALIGN_3_PRIME	chr1	TogoVar