Joint Open Genome and Omics Platform (JoGo)

Search by Variant

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Chr

Chromosome name (e.g., chr11).

Snpeff genename

Exact SnpEff gene name.

Sampleids

Target sampleid (e.g. HG02615).

Snpeff haplotype class

Haplotype-annotation class (e.g., ahapid, ahapid+chapid).

Snpeff annotation impact

Exact impact level (e.g., HIGH, MODERATE, LOW).

Snpeff annotation impact detail

Keyword match in SnpEff annotation.

Hapid

One or more haplotype IDs (comma-separated; e.g., a0001, a01, a0001c0001, a01c02, a1c2, a0001c0001t0005, a0001c0001t0005g0018).

Samplehapid

Sample haplotype IDs to include (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

No_hapid

Haplotype IDs to exclude (comma-separated; e.g., a0001, a0002, a0001c0001, a0001c0001t0005, a1, a01).

No_samplehapid

Sample haplotype IDs to exclude (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

Start

Start position (GRCh38).

End

End position (GRCh38).

Minac

Minimum alternate allele count (≥).

Maxac

Maximum alternate allele count (≤).

Minlen

Minimum variant length (≥).

Maxlen

Maximum variant length (≤).

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⚠️ Results limited to 10,000 hits. Refine your search for more specific results.

regionname	pos	ref	alt	annotation	impact	samples	ahapids	achapids	acthapids	actghapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	external
LRRC4B_chr19_50511892_50573435	50552646	G G	GTCCATCC others(25): Show GTCCATCCATCTGTCCGTCCATCCATCCATCCA	intron_variant intron_variant	MODIFIER	HG02451.hp1 HG02615.hp1 HG02622.hp1 others(7): Show HG02451.hp1 HG02615.hp1 HG02622.hp1 HG02647.hp2 HG02717.hp1 HG03041.hp2 HG03098.hp1 HG03130.hp2 NA19043.hp2 NA20129.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0001c0003 a0002c0002 a0001c0001 a0001c0003 a0002c0002	a0001c0001t0001 a0001c0003t0001 a0002c0002t0001 a0001c0001t0001 a0001c0003t0001 a0002c0002t0001	a0001c0001t0001g0060 a0001c0001t0001g0066 a0001c0001t0001g0068 others(7): Show a0001c0001t0001g0060 a0001c0001t0001g0066 a0001c0001t0001g0068 a0001c0003t0001g0061 a0001c0003t0001g0065 a0001c0003t0001g0067 a0001c0003t0001g0071 a0001c0003t0001g0101 a0002c0002t0001g0069 a0002c0002t0001g0070	10	360	0.0278	32	c.-35 others(49): Show c.-35-3774_-35-3773insTGGATGGATGGATGGACGGACAGATGGA TGGA	LRRC4B	ENSG00000131409.13	transcript	ENST00000652263.1	protein_coding	1/2			chr19	TogoVar
LRRC4C_chr11_40109209_41464652	40584177	C C	CATATATA others(25): Show CATATATATATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG02280.hp2 HG02572.hp2 HG02280.hp2 HG02572.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0018 a0001c0002t0001g0030 a0001c0002t0001g0018 a0001c0002t0001g0030	2	48	0.0417	32	c.-27 others(53): Show c.-270+63964_-270+63965insATATATATATATATATATATATAT ATATATAT	LRRC4C	ENSG00000148948.8	transcript	ENST00000528697.6	protein_coding	3/6			chr11	TogoVar
LRRC4C_chr11_40109209_41464652	40633371	T T	TTCTTTCT others(25): Show TTCTTTCTTTCTTTCTTTCTTTCTTTCTCTCTC	intron_variant intron_variant	MODIFIER	HG01074.hp2 HG01074.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0036 a0001c0001t0002g0036	1	48	0.0208	32	c.-27 others(53): Show c.-270+14770_-270+14771insGAGAGAGAAAGAAAGAAAGAAAGA AAGAAAGA	LRRC4C	ENSG00000148948.8	transcript	ENST00000528697.6	protein_coding	3/6			chr11	TogoVar
LRRC4C_chr11_40109209_41464652	40936014	T T	TTATATAT others(25): Show TTATATATATATATATATATATATATATATATA	intron_variant intron_variant	MODIFIER	HG02970.hp1 HG02970.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0005 a0001c0001t0001g0005	1	48	0.0208	32	c.-49 others(51): Show c.-495-2323_-495-2292dupTATATATATATATATATATATATATA TATATA	LRRC4C	ENSG00000148948.8	transcript	ENST00000528697.6	protein_coding	1/6			chr11	TogoVar
LRRC4C_chr11_40109209_41464652	41244188	T T	TCTATCTA others(25): Show TCTATCTATCTATCTATCTATCTATCTATCTAC	intron_variant intron_variant	MODIFIER	HG02717.hp1 NA20300.hp1 HG02717.hp1 NA20300.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0001 a0001c0001t0002	a0001c0001t0001g0028 a0001c0001t0002g0016 a0001c0001t0001g0028 a0001c0001t0002g0016	2	48	0.0417	32	c.-49 others(55): Show c.-496+215242_-496+215243insGTAGATAGATAGATAGATAGAT AGATAGATAG	LRRC4C	ENSG00000148948.8	transcript	ENST00000528697.6	protein_coding	1/6			chr11	TogoVar
LRRC53_chr1_74464376_74517611	74486201	A A	AAGAGAGA others(25): Show AAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG	intron_variant intron_variant	MODIFIER	HG02818.hp2 HG02818.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0221 a0001c0001t0001g0221	1	342	0.0029	32	c.-26 others(49): Show c.-26-2858_-26-2827dupCTCTCTCTCTCTCTCTCTCTCTCTCTCT CTCT	LRRC53	ENSG00000162621.7	transcript	ENST00000294635.5	protein_coding	1/4			chr1	TogoVar
LRRC57_chr15_42532829_42553793	42537248	C C	CACACACA others(25): Show CACACACACACACACACACACACACACACACAT	downstream_gene_variant downstream_gene_variant	MODIFIER	NA19030.hp1 NA19030.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0020 a0001c0001t0020	a0001c0001t0020g0157 a0001c0001t0020g0157	1	356	0.0028	32	c.68 others(43): Show c.6834_*6835insATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT	LRRC57	ENSG00000180979.10	transcript	ENST00000397130.8	protein_coding		580		chr15	TogoVar
LRRC57_chr15_42532829_42553793	42544842	C C	CAATATAT others(25): Show CAATATATATATATATATATATATATATATATA	intron_variant intron_variant	MODIFIER	HG01257.hp2 HG01258.hp1 HG01257.hp2 HG01258.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0019 a0001c0001t0019	a0001c0001t0019g0021 a0001c0001t0019g0021	2	356	0.0056	32	c.678 others(47): Show c.678+234_678+235insTATATATATATATATATATATATATATATA TT	LRRC57	ENSG00000180979.10	transcript	ENST00000397130.8	protein_coding	5/5			chr15	TogoVar
LRRC57_chr15_42532829_42553793	42544842	C C	CACAATAT others(25): Show CACAATATATATATATATATATATATATATATA	intron_variant intron_variant	MODIFIER	HG02717.hp1 NA20129.hp2 HG02717.hp1 NA20129.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0029 a0001c0001t0119 a0001c0001t0029 a0001c0001t0119	a0001c0001t0029g0051 a0001c0001t0119g0052 a0001c0001t0029g0051 a0001c0001t0119g0052	2	356	0.0056	32	c.678 others(47): Show c.678+234_678+235insTATATATATATATATATATATATATATATT GT	LRRC57	ENSG00000180979.10	transcript	ENST00000397130.8	protein_coding	5/5			chr15	TogoVar
LRRC57_chr15_42532829_42553793	42544842	C C	CACTATAT others(25): Show CACTATATATATATATATATATATATATATATA	intron_variant intron_variant	MODIFIER	HG02897.hp2 HG02897.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0081 a0001c0001t0081	a0001c0001t0081g0147 a0001c0001t0081g0147	1	356	0.0028	32	c.678 others(47): Show c.678+234_678+235insTATATATATATATATATATATATATATATA GT	LRRC57	ENSG00000180979.10	transcript	ENST00000397130.8	protein_coding	5/5			chr15	TogoVar
LRRC63_chr13_46206928_46282115	46255645	A A	AATATATA others(25): Show AATATATATATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG01256.hp1 HG01261.hp2 HG01891.hp1 others(8): Show HG01256.hp1 HG01261.hp2 HG01891.hp1 HG01952.hp2 NA18942.hp2 NA18959.hp1 NA18974.hp1 NA19005.hp1 NA19063.hp1 NA19082.hp2 NA19240.hp1	a0001 a0002 a0007 a0001 a0002 a0007	a0001c0001 a0002c0002 a0002c0010 others(1): Show a0001c0001 a0002c0002 a0002c0010 a0007c0007	a0001c0001t0001 a0002c0002t0001 a0002c0002t0002 others(5): Show a0001c0001t0001 a0002c0002t0001 a0002c0002t0002 a0002c0002t0010 a0002c0002t0011 a0002c0002t0012 a0002c0010t0002 a0007c0007t0001	a0001c0001t0001g0221 a0001c0001t0001g0247 a0002c0002t0001g0037 others(7): Show a0001c0001t0001g0221 a0001c0001t0001g0247 a0002c0002t0001g0037 a0002c0002t0001g0284 a0002c0002t0002g0292 a0002c0002t0010g0165 a0002c0002t0011g0270 a0002c0002t0012g0262 a0002c0010t0002g0279 a0007c0007t0001g0286	11	386	0.0285	32	c.122 others(51): Show c.1226+5175_1226+5176insTATATATATATATATATATATATATA TATATA	LRRC63	ENSG00000173988.14	transcript	ENST00000595396.3	protein_coding	7/9		INFO_REALIGN_3_PRIME	chr13	TogoVar
LRRC71_chr1_156915632_156938094	156928351	C C	CTTCTTCT others(25): Show CTTCTTCTTCTTTCCTCTTCTTCTTCTTCTTCT	intron_variant intron_variant	MODIFIER	NA19062.hp2 NA19062.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0001 a0002c0002t0001	a0002c0002t0001g0177 a0002c0002t0001g0177	1	402	0.0025	32	c.996 others(47): Show c.996+348_996+349insTCTTCTTCTTTCCTCTTCTTCTTCTTCTTC TT	LRRC71	ENSG00000160838.14	transcript	ENST00000337428.8	protein_coding	9/14		INFO_REALIGN_3_PRIME	chr1	TogoVar
LRRC71_chr1_156915632_156938094	156936495	A A	AATATATA others(25): Show AATATATATATATATATATATATATATATATAT	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02647.hp2 HG02647.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0041 a0001c0001t0001g0041	1	402	0.0025	32	c.35 others(43): Show c.3526_*3527insATATATATATATATATATATATATATATATAT	LRRC71	ENSG00000160838.14	transcript	ENST00000337428.8	protein_coding		3402		chr1	TogoVar
LRRC71_chr1_156915632_156938094	156936497	A A	AAAATATA others(25): Show AAAATATATATATATATATATATATATATATAT	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02145.hp2 HG03195.hp1 HG03516.hp2 HG02145.hp2 HG03195.hp1 HG03516.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0021 a0001c0001t0001g0022 a0001c0001t0001g0021 a0001c0001t0001g0022	3	402	0.0075	32	c.35 others(43): Show c.3528_*3529insAAATATATATATATATATATATATATATATAT	LRRC71	ENSG00000160838.14	transcript	ENST00000337428.8	protein_coding		3404		chr1	TogoVar
LRRC74A_chr14_76821408_76875304	76866963	T T	TTGGGGAG others(25): Show TTGGGGAGGTGGGGTGTGTGTGTGGTAGTGTGG	intron_variant intron_variant	MODIFIER	HG02257.hp2 HG02257.hp2	a0004 a0004	a0004c0006 a0004c0006	a0004c0006t0001 a0004c0006t0001	a0004c0006t0001g0377 a0004c0006t0001g0377	1	408	0.0025	32	c.130 others(49): Show c.1309-393_1309-392insTGGGGAGGTGGGGTGTGTGTGTGGTAGT GTGG	LRRC74A	ENSG00000100565.16	transcript	ENST00000689127.1	protein_coding	12/13			chr14	TogoVar
LRRC74A_chr14_76821408_76875304	76867087	T T	TGTGTGTG others(25): Show TGTGTGTGTGTGGGGTGTGTGTTGGGGGGTGGG	intron_variant intron_variant	MODIFIER	HG00099.hp1 HG01070.hp2 HG01071.hp2 others(13): Show HG00099.hp1 HG01070.hp2 HG01071.hp2 HG01123.hp2 HG01167.hp2 HG01192.hp2 HG01257.hp2 HG01433.hp1 HG01934.hp2 HG01952.hp1 HG01981.hp1 HG01993.hp2 HG02258.hp2 HG02273.hp1 NA19072.hp1 NA20905.hp1	a0002 a0004 a0006 a0002 a0004 a0006	a0002c0002 a0004c0006 a0006c0012 a0002c0002 a0004c0006 a0006c0012	a0002c0002t0001 a0002c0002t0003 a0004c0006t0001 others(1): Show a0002c0002t0001 a0002c0002t0003 a0004c0006t0001 a0006c0012t0001	a0002c0002t0001g0008 a0002c0002t0001g0288 a0002c0002t0001g0289 others(11): Show a0002c0002t0001g0008 a0002c0002t0001g0288 a0002c0002t0001g0289 a0002c0002t0001g0290 a0002c0002t0001g0292 a0002c0002t0001g0293 a0002c0002t0001g0294 a0002c0002t0001g0321 a0002c0002t0003g0001 a0002c0002t0003g0044 a0002c0002t0003g0045 a0002c0002t0003g0207 a0004c0006t0001g0376 a0006c0012t0001g0244	16	408	0.0392	32	c.130 others(49): Show c.1309-260_1309-259insTGGGGTGTGTGTTGGGGGGTGGGGTGTG TGTG	LRRC74A	ENSG00000100565.16	transcript	ENST00000689127.1	protein_coding	12/13		INFO_REALIGN_3_PRIME	chr14	TogoVar
LRRC7_chr1_69562922_70149364	69703329	C C	CTAGTTTT others(25): Show CTAGTTTTACTTCATTTCATAAAAGTAATACTA	intron_variant intron_variant	MODIFIER	HG02630.hp2 HG02630.hp2	a0001 a0001	a0001c0017 a0001c0017	a0001c0017t0052 a0001c0017t0052	a0001c0017t0052g0017 a0001c0017t0052g0017	1	108	0.0093	32	c.100 others(51): Show c.100+24861_100+24892dupTTCATTTCATAAAAGTAATACTATAG TTTTAC	LRRC7	ENSG00000033122.21	transcript	ENST00000651989.2	protein_coding	2/26		INFO_REALIGN_3_PRIME	chr1	TogoVar
LRRC7_chr1_69562922_70149364	69755377	A A	AATATATA others(25): Show AATATATATATTTATATATATGCAAAAGTATAT	intron_variant intron_variant	MODIFIER	HG01192.hp1 HG01515.hp1 HG01192.hp1 HG01515.hp1	a0001 a0007 a0001 a0007	a0001c0001 a0007c0012 a0001c0001 a0007c0012	a0001c0001t0007 a0007c0012t0004 a0001c0001t0007 a0007c0012t0004	a0001c0001t0007g0104 a0007c0012t0004g0007 a0001c0001t0007g0104 a0007c0012t0004g0007	2	108	0.0185	32	c.101 others(49): Show c.101-4801_101-4770dupATATATATGCAAAAGTATATATATATAT ATTT	LRRC7	ENSG00000033122.21	transcript	ENST00000651989.2	protein_coding	2/26		INFO_REALIGN_3_PRIME	chr1	TogoVar
LRRC9_chr14_59915144_60071817	60067740	A A	AATATATA others(25): Show AATATATATATATATATATATATATATATATAT	downstream_gene_variant downstream_gene_variant	MODIFIER	NA18995.hp2 NA18995.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0031 a0001c0001t0031	a0001c0001t0031g0219 a0001c0001t0031g0219	1	322	0.0031	32	c.43 others(43): Show c.4378_*4379insATATATATATATATATATATATATATATATAT	LRRC9	ENSG00000131951.12	transcript	ENST00000570145.2	protein_coding		924		chr14	TogoVar
LRRD1_chr7_92139842_92184142	92158406	T T	TGTATATA others(25): Show TGTATATATGTATATATGTGTACATATATGTGC	intron_variant intron_variant	MODIFIER	HG01243.hp2 HG01243.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0001 a0002c0002t0001	a0002c0002t0001g0326 a0002c0002t0001g0326	1	360	0.0028	32	c.211 others(49): Show c.2116+567_2116+598dupGCACATATATGTACACATATATACATAT ATAC	LRRD1	ENSG00000240720.10	transcript	ENST00000458448.6	protein_coding	3/5			chr7	TogoVar
LRRD1_chr7_92139842_92184142	92158407	G G	GTATATAT others(25): Show GTATATATGTATATATGTGTACATATATGTGCA	intron_variant intron_variant	MODIFIER	NA19091.hp1 NA19091.hp1	a0003 a0003	a0003c0003 a0003c0003	a0003c0003t0001 a0003c0003t0001	a0003c0003t0001g0217 a0003c0003t0001g0217	1	360	0.0028	32	c.211 others(49): Show c.2116+566_2116+597dupTGCACATATATGTACACATATATACATA TATA	LRRD1	ENSG00000240720.10	transcript	ENST00000458448.6	protein_coding	3/5			chr7	TogoVar
LRRFIP2_chr3_37047626_37179582	37100383	C C	CATACATA others(25): Show CATACATACATACATGTGTATGTATATATACAT	intron_variant intron_variant	MODIFIER	HG04199.hp1 HG04199.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0148 a0001c0001t0001g0148	1	268	0.0037	32	c.873 others(49): Show c.873+2509_873+2540dupATGTATATATACATACACATGTATGTAT GTAT	LRRFIP2	ENSG00000093167.18	transcript	ENST00000336686.9	protein_coding	15/27			chr3	TogoVar
LRRIQ1_chr12_85031351_85250105	85197951	A A	AATTATAT others(25): Show AATTATATATTATATATAAATATATATAATTAT	intron_variant intron_variant	MODIFIER	HG01069.hp1 HG01071.hp2 HG01069.hp1 HG01071.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0001 a0001c0002t0001g0001	2	228	0.0088	32	c.482 others(53): Show c.4823-31547_4823-31516dupATATATATAATTATATTATATATT ATATATAA	LRRIQ1	ENSG00000133640.20	transcript	ENST00000393217.7	protein_coding	24/26		INFO_REALIGN_3_PRIME	chr12	TogoVar
LRRIQ1_chr12_85031351_85250105	85236830	C C	CATATATA others(25): Show CATATATATATATATCTATATATATATATATAT	intron_variant intron_variant	MODIFIER	NA18978.hp1 NA18982.hp1 NA19084.hp2 NA18978.hp1 NA18982.hp1 NA19084.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0012 a0001c0001t0002g0127 a0001c0001t0002g0142 a0001c0001t0002g0012 a0001c0001t0002g0127 a0001c0001t0002g0142	3	228	0.0132	32	c.501 others(51): Show c.5016+4088_5016+4089insCTATATATATATATATATATATATAT ATATAT	LRRIQ1	ENSG00000133640.20	transcript	ENST00000393217.7	protein_coding	26/26		INFO_REALIGN_3_PRIME	chr12	TogoVar
LRRIQ1_chr12_85031351_85250105	85236830	C C	CATATATA others(25): Show CATATATATATCTATCTATCTATCTATATATAT	intron_variant intron_variant	MODIFIER	HG02922.hp1 HG02922.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0125 a0001c0001t0002g0125	1	228	0.0044	32	c.501 others(51): Show c.5016+4084_5016+4085insCTATCTATCTATCTATATATATATAT ATATAT	LRRIQ1	ENSG00000133640.20	transcript	ENST00000393217.7	protein_coding	26/26		INFO_REALIGN_3_PRIME	chr12	TogoVar
LRRK1_chr15_100914357_101083257	100962800	T T	TATATACA others(25): Show TATATACATATATATATATATATATATATATAC	intron_variant intron_variant	MODIFIER	HG01891.hp1 HG02055.hp1 HG02630.hp2 others(2): Show HG01891.hp1 HG02055.hp1 HG02630.hp2 HG02895.hp1 NA18906.hp2	a0001 a0002 a0001 a0002	a0001c0010 a0001c0045 a0001c0046 others(2): Show a0001c0010 a0001c0045 a0001c0046 a0001c0080 a0002c0026	a0001c0010t0207 a0001c0045t0189 a0001c0046t0233 others(2): Show a0001c0010t0207 a0001c0045t0189 a0001c0046t0233 a0001c0080t0163 a0002c0026t0229	a0001c0010t0207g0115 a0001c0045t0189g0098 a0001c0046t0233g0119 others(2): Show a0001c0010t0207g0115 a0001c0045t0189g0098 a0001c0046t0233g0119 a0001c0080t0163g0084 a0002c0026t0229g0135	5	338	0.0148	32	c.98- others(49): Show c.98-10999_98-10998insCATATATATATATATATATATATATACA TATA	LRRK1	ENSG00000154237.13	transcript	ENST00000388948.8	protein_coding	2/33		INFO_REALIGN_3_PRIME	chr15	TogoVar
LRRK2_chr12_40219997_40374285	40293894	C C	CATATATA others(25): Show CATATATATATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	NA18983.hp2 NA18983.hp2	a0004 a0004	a0004c0006 a0004c0006	a0004c0006t0019 a0004c0006t0019	a0004c0006t0019g0360 a0004c0006t0019g0360	1	382	0.0026	32	c.280 others(49): Show c.2808+232_2808+233insTATATATATATATATATATATATATATA TATA	LRRK2	ENSG00000188906.17	transcript	ENST00000298910.12	protein_coding	21/50		INFO_REALIGN_3_PRIME	chr12	TogoVar
LRRK2_chr12_40219997_40374285	40355527	C C	CCCTCCCT others(25): Show CCCTCCCTCCCTCCCTCCCTTCCTTCCTTCCTT	intron_variant intron_variant	MODIFIER	NA19057.hp1 NA19088.hp2 NA19057.hp1 NA19088.hp2	a0002 a0002	a0002c0001 a0002c0001	a0002c0001t0001 a0002c0001t0001	a0002c0001t0001g0004 a0002c0001t0001g0005 a0002c0001t0001g0004 a0002c0001t0001g0005	2	382	0.0052	32	c.677 others(49): Show c.6771-585_6771-584insCCCTCCCTCCCTCCCTTCCTTCCTTCCT TCCT	LRRK2	ENSG00000188906.17	transcript	ENST00000298910.12	protein_coding	45/50		INFO_REALIGN_3_PRIME	chr12	TogoVar
LRRN1_chr3_3794431_3854834	3834525	G G	GACATATA others(25): Show GACATATATATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	NA18973.hp1 NA18973.hp1	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0064 a0001c0003t0064	a0001c0003t0064g0311 a0001c0003t0064g0311	1	422	0.0024	32	c.-27 others(51): Show c.-278-9838_-278-9837insCATATATATATATATATATATATATA TATATA	LRRN1	ENSG00000175928.6	transcript	ENST00000319331.4	protein_coding	1/1		INFO_REALIGN_3_PRIME	chr3	TogoVar
LRRN1_chr3_3794431_3854834	3834525	G G	GATATATA others(25): Show GATATATATATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	NA18957.hp2 NA18957.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0353 a0001c0001t0003g0353	1	422	0.0024	32	c.-27 others(51): Show c.-278-9811_-278-9810insATATATATATATATATATATATATAT ATATAT	LRRN1	ENSG00000175928.6	transcript	ENST00000319331.4	protein_coding	1/1		INFO_REALIGN_3_PRIME	chr3	TogoVar
LRRTM3_chr10_66921036_67106551	66978552	A A	AAAAAATA others(25): Show AAAAAATATATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG02027.hp1 NA19086.hp1 HG02027.hp1 NA19086.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0002c0002 a0001c0001 a0002c0002	a0001c0001t0018 a0002c0002t0004 a0001c0001t0018 a0002c0002t0004	a0001c0001t0018g0197 a0002c0002t0004g0203 a0001c0001t0018g0197 a0002c0002t0004g0203	2	294	0.0068	32	c.153 others(53): Show c.1536+50101_1536+50102insAAAATATATATATATATATATATA TATATATA	LRRTM3	ENSG00000198739.11	transcript	ENST00000361320.5	protein_coding	2/2		INFO_REALIGN_3_PRIME	chr10	TogoVar
LRRTM3_chr10_66921036_67106551	67025153	A A	AAAGGAAG others(25): Show AAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGG	intron_variant intron_variant	MODIFIER	HG02818.hp1 HG03579.hp1 HG02818.hp1 HG03579.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0124 a0001c0001t0001g0232 a0001c0001t0001g0124 a0001c0001t0001g0232	2	294	0.0068	32	c.153 others(53): Show c.1537-72412_1537-72411insGGAAGGAAGGAAGGAAGGAAGGAA GGAAGGAA	LRRTM3	ENSG00000198739.11	transcript	ENST00000361320.5	protein_coding	2/2		INFO_REALIGN_3_PRIME	chr10	TogoVar
LRRTM4_chr2_76742685_77527376	76812673	C C	CTCTTTCT others(25): Show CTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTT	intron_variant intron_variant	MODIFIER	HG03579.hp2 HG03579.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0121 a0001c0001t0002g0121	1	128	0.0078	32	c.155 others(53): Show c.1552-63758_1552-63757insAAGAAAGAAAGAAAGAAAGAAAGA AAGAAAGA	LRRTM4	ENSG00000176204.14	transcript	ENST00000409884.6	protein_coding	3/3			chr2	TogoVar
LRRTM4_chr2_76742685_77527376	76979541	G G	GTATATAT others(25): Show GTATATATATATATATATATATATATATATATA	intron_variant intron_variant	MODIFIER	HG01243.hp2 HG01261.hp2 HG01884.hp1 others(5): Show HG01243.hp2 HG01261.hp2 HG01884.hp1 HG02055.hp2 HG02622.hp1 NA18968.hp2 NA19043.hp1 NA21309.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0001 a0001c0001t0002 a0001c0001t0003	a0001c0001t0001g0096 a0001c0001t0001g0101 a0001c0001t0001g0104 others(5): Show a0001c0001t0001g0096 a0001c0001t0001g0101 a0001c0001t0001g0104 a0001c0001t0002g0024 a0001c0001t0002g0059 a0001c0001t0002g0078 a0001c0001t0003g0088 a0001c0001t0003g0108	8	128	0.0625	32	c.155 others(55): Show c.1552-230626_1552-230625insTATATATATATATATATATATA TATATATATA	LRRTM4	ENSG00000176204.14	transcript	ENST00000409884.6	protein_coding	3/3			chr2	TogoVar
LRRTM4_chr2_76742685_77527376	77049125	T T	TATATATA others(25): Show TATATATATATACATATATATATATATATATAC	intron_variant intron_variant	MODIFIER	NA21309.hp1 NA21309.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0038 a0001c0001t0001g0038	1	128	0.0078	32	c.155 others(55): Show c.1552-300210_1552-300209insGTATATATATATATATATATGT ATATATATAT	LRRTM4	ENSG00000176204.14	transcript	ENST00000409884.6	protein_coding	3/3			chr2	TogoVar
LRRTM4_chr2_76742685_77527376	77306897	A A	ATTTTTTT others(25): Show ATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG01109.hp2 HG02135.hp1 HG02622.hp1 HG01109.hp2 HG02135.hp1 HG02622.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0004 a0001c0001t0001 a0001c0001t0004	a0001c0001t0001g0030 a0001c0001t0001g0096 a0001c0001t0004g0010 a0001c0001t0001g0030 a0001c0001t0001g0096 a0001c0001t0004g0010	3	128	0.0234	32	c.155 others(55): Show c.1551+211420_1551+211421insAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAA	LRRTM4	ENSG00000176204.14	transcript	ENST00000409884.6	protein_coding	3/3			chr2	TogoVar
LRRTM4_chr2_76742685_77527376	77362170	A A	AAAGAAAG others(25): Show AAAGAAAGAAAGGAAGGAAGGAAGGAAGGAAGG	intron_variant intron_variant	MODIFIER	NA21309.hp2 NA21309.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0104 a0001c0001t0001g0104	1	128	0.0078	32	c.155 others(55): Show c.1551+156147_1551+156148insCCTTCCTTCCTTCCTTCCTTCC TTTCTTTCTT	LRRTM4	ENSG00000176204.14	transcript	ENST00000409884.6	protein_coding	3/3			chr2	TogoVar
LRRTM4_chr2_76742685_77527376	77362170	A A	AAAGGAAG others(25): Show AAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGG	intron_variant intron_variant	MODIFIER	HG01884.hp2 HG01884.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0127 a0001c0001t0002g0127	1	128	0.0078	32	c.155 others(55): Show c.1551+156147_1551+156148insCCTTCCTTCCTTCCTTCCTTCC TTCCTTCCTT	LRRTM4	ENSG00000176204.14	transcript	ENST00000409884.6	protein_coding	3/3			chr2	TogoVar
LSAMP_chr3_115797374_116450487	115818790	T T	TTATATAT others(25): Show TTATATATATATATATATATATATATATATATA	intron_variant intron_variant	MODIFIER	HG02145.hp2 HG02523.hp2 HG03540.hp1 HG02145.hp2 HG02523.hp2 HG03540.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0008 a0001c0001t0001 a0001c0001t0008	a0001c0001t0001g0016 a0001c0001t0001g0035 a0001c0001t0008g0041 a0001c0001t0001g0016 a0001c0001t0001g0035 a0001c0001t0008g0041	3	104	0.0289	32	c.920 others(49): Show c.920-8408_920-8377dupTATATATATATATATATATATATATATA TATA	LSAMP	ENSG00000185565.13	transcript	ENST00000490035.7	protein_coding	6/6			chr3	TogoVar
LSAMP_chr3_115797374_116450487	116102785	A A	ATCTATCT others(25): Show ATCTATCTATCTATCTATCTATCTATCTATCTG	intron_variant intron_variant	MODIFIER	HG02922.hp1 HG02922.hp2 HG02922.hp1 HG02922.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0011 a0001c0001t0067 a0001c0001t0011 a0001c0001t0067	a0001c0001t0011g0095 a0001c0001t0067g0064 a0001c0001t0011g0095 a0001c0001t0067g0064	2	104	0.0192	32	c.156 others(51): Show c.156-16230_156-16229insCAGATAGATAGATAGATAGATAGATA GATAGA	LSAMP	ENSG00000185565.13	transcript	ENST00000490035.7	protein_coding	1/6			chr3	TogoVar
LSAMP_chr3_115797374_116450487	116197163	A A	ACACACAC others(25): Show ACACACACACACTCTCTCTCTCTCTCTCTCTCT	intron_variant intron_variant	MODIFIER	HG02622.hp2 HG02622.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0004	a0001c0001t0004g0088 a0001c0001t0004g0088	1	104	0.0096	32	c.156 others(53): Show c.156-110608_156-110607insAGAGAGAGAGAGAGAGAGAGAGTG TGTGTGTG	LSAMP	ENSG00000185565.13	transcript	ENST00000490035.7	protein_coding	1/6			chr3	TogoVar
LSAMP_chr3_115797374_116450487	116273683	C C	CAGATATA others(25): Show CAGATATATATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG02818.hp2 NA19043.hp1 HG02818.hp2 NA19043.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0011 a0001c0001t0050 a0001c0001t0011 a0001c0001t0050	a0001c0001t0011g0068 a0001c0001t0050g0066 a0001c0001t0011g0068 a0001c0001t0050g0066	2	104	0.0192	32	c.155 others(53): Show c.155+171193_155+171194insATATATATATATATATATATATAT ATATATCT	LSAMP	ENSG00000185565.13	transcript	ENST00000490035.7	protein_coding	1/6			chr3	TogoVar
LSAMP_chr3_115797374_116450487	116273707	T T	TATATATA others(25): Show TATATATATATATATATATATATATATACACAC	intron_variant intron_variant	MODIFIER	HG03130.hp2 HG03130.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0063 a0001c0001t0063	a0001c0001t0063g0096 a0001c0001t0063g0096	1	104	0.0096	32	c.155 others(53): Show c.155+171169_155+171170insGTGTGTATATATATATATATATAT ATATATAT	LSAMP	ENSG00000185565.13	transcript	ENST00000490035.7	protein_coding	1/6			chr3	TogoVar
LSAMP_chr3_115797374_116450487	116273707	T T	TATATATA others(25): Show TATATATATATATATATATATATATATATACAC	intron_variant intron_variant	MODIFIER	HG01069.hp2 HG01361.hp2 HG02145.hp1 HG01069.hp2 HG01361.hp2 HG02145.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0015 a0001c0001t0024 a0001c0001t0072 a0001c0001t0015 a0001c0001t0024 a0001c0001t0072	a0001c0001t0015g0059 a0001c0001t0024g0015 a0001c0001t0072g0063 a0001c0001t0015g0059 a0001c0001t0024g0015 a0001c0001t0072g0063	3	104	0.0289	32	c.155 others(53): Show c.155+171169_155+171170insGTGTATATATATATATATATATAT ATATATAT	LSAMP	ENSG00000185565.13	transcript	ENST00000490035.7	protein_coding	1/6			chr3	TogoVar
LSG1_chr3_194635791_194677191	194667942	A A	AAAAAAAA others(25): Show AAAAAAAAAAAAAATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG02572.hp2 HG02572.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0081 a0002c0002t0081	a0002c0002t0081g0228 a0002c0002t0081g0228	1	408	0.0025	32	c.227 others(49): Show c.227-1371_227-1370insATATATATATATATATATATTTTTTTTT TTTT	LSG1	ENSG00000041802.11	transcript	ENST00000265245.10	protein_coding	2/13			chr3	TogoVar
LSM11_chr5_157738712_157765709	157759325	T T	TTGAGAAA others(25): Show TTGAGAAAAAAGAAATAGAAACTTACTTGATGC	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG03654.hp1 HG03654.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0026 a0001c0001t0026	a0001c0001t0026g0002 a0001c0001t0026g0002	1	430	0.0023	32	c.40 others(43): Show c.4062_*4093dupTGAGAAAAAAGAAATAGAAACTTACTTGATGC	LSM11	ENSG00000155858.6	transcript	ENST00000286307.6	protein_coding	4/4	4094	INFO_REALIGN_3_PRIME	chr5	TogoVar
LSM14A_chr19_34167504_34234288	34232154	A A	AATCAGCA others(25): Show AATCAGCATCTTTCGGGACGGCCTGAGGCGGGG	downstream_gene_variant downstream_gene_variant	MODIFIER	NA19058.hp1 NA19058.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0016 a0001c0001t0016	a0001c0001t0016g0049 a0001c0001t0016g0049	1	315	0.0032	32	c.47 others(43): Show c.4766_*4767insATCAGCATCTTTCGGGACGGCCTGAGGCGGGG	LSM14A	ENSG00000257103.9	transcript	ENST00000544216.8	protein_coding		2867		chr19	TogoVar
LSM4_chr19_18301236_18328076	18321193	C C	CAGCTAGT others(25): Show CAGCTAGTTAAGTCCGATTCGGGGGTAAGGTCG	intron_variant intron_variant	MODIFIER	NA18522.hp2 NA18522.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0090 a0001c0001t0002g0090	1	394	0.0025	32	c.3+1 others(45): Show c.3+1824_3+1825insCGACCTTACCCCCGAATCGGACTTAACTAGCT	LSM4	ENSG00000130520.11	transcript	ENST00000593829.6	protein_coding	1/4			chr19	TogoVar
LSM6_chr4_146170718_146196535	146172164	C C	CTTCTTTC others(25): Show CTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCT	upstream_gene_variant upstream_gene_variant	MODIFIER	NA18945.hp1 NA18945.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0002 a0001c0001t0002g0002	1	376	0.0027	32	c.-36 others(43): Show c.-3658_-3657insTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCT	LSM6	ENSG00000164167.12	transcript	ENST00000296581.11	protein_coding		3553		chr4	TogoVar
LSR_chr19_35244002_35272964	35251843	C C	CTTTTTTT others(25): Show CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	NA20300.hp2 NA20300.hp2	a0001 a0001	a0001c0004 a0001c0004	a0001c0004t0001 a0001c0004t0001	a0001c0004t0001g0199 a0001c0004t0001g0199	1	438	0.0023	32	c.454 others(49): Show c.454+1193_454+1194insTTTTTTTTTTTTTTTTTTTTTTTTTTTT TTTT	LSR	ENSG00000105699.17	transcript	ENST00000605618.6	protein_coding	2/9		INFO_REALIGN_3_PRIME	chr19	TogoVar

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