Joint Open Genome and Omics Platform (JoGo)

Search by Variant

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Chr

Chromosome name (e.g., chr11).

Snpeff genename

Exact SnpEff gene name.

Sampleids

Target sampleid (e.g. HG02615).

Snpeff haplotype class

Haplotype-annotation class (e.g., ahapid, ahapid+chapid).

Snpeff annotation impact

Exact impact level (e.g., HIGH, MODERATE, LOW).

Snpeff annotation impact detail

Keyword match in SnpEff annotation.

Hapid

One or more haplotype IDs (comma-separated; e.g., a0001, a01, a0001c0001, a01c02, a1c2, a0001c0001t0005, a0001c0001t0005g0018).

Samplehapid

Sample haplotype IDs to include (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

No_hapid

Haplotype IDs to exclude (comma-separated; e.g., a0001, a0002, a0001c0001, a0001c0001t0005, a1, a01).

No_samplehapid

Sample haplotype IDs to exclude (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

Start

Start position (GRCh38).

End

End position (GRCh38).

Minac

Minimum alternate allele count (≥).

Maxac

Maximum alternate allele count (≤).

Minlen

Minimum variant length (≥).

Maxlen

Maximum variant length (≤).

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⚠️ Results limited to 10,000 hits. Refine your search for more specific results.

regionname	pos	ref	alt	annotation	impact	samples	ahapids	achapids	acthapids	actghapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	external
APOBEC1_chr12_7644400_7670908	7660375	G G	GGAAGGAA others(25): Show GGAAGGAAGGAAGGACAGAAAGAAAGAAAGAAA	intron_variant intron_variant	MODIFIER	HG00597.hp2 HG01975.hp2 HG02004.hp2 others(1): Show HG00597.hp2 HG01975.hp2 HG02004.hp2 NA18966.hp2	a0001 a0002 a0001 a0002	a0001c0002 a0002c0001 a0001c0002 a0002c0001	a0001c0002t0001 a0002c0001t0001 a0001c0002t0001 a0002c0001t0001	a0001c0002t0001g0365 a0001c0002t0001g0386 a0001c0002t0001g0397 others(1): Show a0001c0002t0001g0365 a0001c0002t0001g0386 a0001c0002t0001g0397 a0002c0001t0001g0338	4	432	0.0093	32	c.16+ others(47): Show c.16+5481_16+5482insTTTCTTTCTTTCTTTCTGTCCTTCCTTCCT TC	APOBEC1	ENSG00000111701.7	transcript	ENST00000229304.5	protein_coding	1/4			chr12	TogoVar
APOBEC1_chr12_7644400_7670908	7660375	G G	GGAAGGAA others(25): Show GGAAGGAAGGACAGAAAGAAAGAAAGAAAGAAA	intron_variant intron_variant	MODIFIER	HG02698.hp1 HG03017.hp1 NA20300.hp2 HG02698.hp1 HG03017.hp1 NA20300.hp2	a0001 a0002 a0001 a0002	a0001c0003 a0002c0001 a0001c0003 a0002c0001	a0001c0003t0001 a0002c0001t0001 a0001c0003t0001 a0002c0001t0001	a0001c0003t0001g0170 a0001c0003t0001g0374 a0002c0001t0001g0402 a0001c0003t0001g0170 a0001c0003t0001g0374 a0002c0001t0001g0402	3	432	0.0069	32	c.16+ others(47): Show c.16+5481_16+5482insTTTCTTTCTTTCTTTCTTTCTGTCCTTCCT TC	APOBEC1	ENSG00000111701.7	transcript	ENST00000229304.5	protein_coding	1/4			chr12	TogoVar
APOBEC1_chr12_7644400_7670908	7660375	G G	GGAAGGAC others(25): Show GGAAGGACAGAAAGAAAGAAAGAAAGAAAGAAA	intron_variant intron_variant	MODIFIER	HG02074.hp1 HG02257.hp2 NA18522.hp2 HG02074.hp1 HG02257.hp2 NA18522.hp2	a0001 a0002 a0001 a0002	a0001c0003 a0002c0001 a0001c0003 a0002c0001	a0001c0003t0001 a0002c0001t0001 a0001c0003t0001 a0002c0001t0001	a0001c0003t0001g0381 a0002c0001t0001g0336 a0002c0001t0001g0376 a0001c0003t0001g0381 a0002c0001t0001g0336 a0002c0001t0001g0376	3	432	0.0069	32	c.16+ others(47): Show c.16+5481_16+5482insTTTCTTTCTTTCTTTCTTTCTTTCTGTCCT TC	APOBEC1	ENSG00000111701.7	transcript	ENST00000229304.5	protein_coding	1/4			chr12	TogoVar
APOBEC3C_chr22_39009257_39025352	39016190	A A	ATTATTTA others(25): Show ATTATTTATTTATTTATTTATTTATTTATTTAT	intron_variant intron_variant	MODIFIER	NA18906.hp1 NA18906.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0015 a0001c0001t0015	a0001c0001t0015g0112 a0001c0001t0015g0112	1	460	0.0022	32	c.174 others(47): Show c.174+465_174+466insATTTATTTATTTATTTATTTATTTATTTAT TT	APOBEC3C	ENSG00000244509.4	transcript	ENST00000361441.5	protein_coding	2/3		INFO_REALIGN_3_PRIME	chr22	TogoVar
APOBEC3D_chr22_39016127_39038277	39016190	A A	ATTATTTA others(25): Show ATTATTTATTTATTTATTTATTTATTTATTTAT	upstream_gene_variant upstream_gene_variant	MODIFIER	NA18906.hp1 NA18906.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0008 a0001c0001t0008	a0001c0001t0008g0012 a0001c0001t0008g0012	1	458	0.0022	32	c.-53 others(43): Show c.-5330_-5329insTTATTTATTTATTTATTTATTTATTTATTTAT	APOBEC3D	ENSG00000243811.12	transcript	ENST00000216099.13	protein_coding		4936		chr22	TogoVar
APOE_chr19_44900796_44914393	44905476	C C	CCCCCATA others(25): Show CCCCCATACAAAAACAACAAAAACAAAACAAAA	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00738.hp2 HG00738.hp2	a0003 a0003	a0003c0003 a0003c0003	a0003c0003t0001 a0003c0003t0001	a0003c0003t0001g0003 a0003c0003t0001g0003	1	424	0.0024	32	c.-38 others(41): Show c.-389_-388insCCCCATACAAAAACAACAAAAACAAAACAAAA	APOE	ENSG00000130203.10	transcript	ENST00000252486.9	protein_coding		319		chr19	TogoVar
APOL5_chr22_35712872_35734483	35717235	A A	AAAAAAAA others(25): Show AAAAAAAAAAAAAAAAAAAAAATATATATATAT	upstream_gene_variant upstream_gene_variant	MODIFIER	NA19012.hp1 NA19012.hp1	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0001 a0002c0002t0001	a0002c0002t0001g0001 a0002c0002t0001g0001	1	401	0.0025	32	c.-63 others(41): Show c.-637_-636insAAAAAAAAAAAAAAAAAAAAATATATATATAT	APOL5	ENSG00000128313.2	transcript	ENST00000249044.2	protein_coding		636		chr22	TogoVar
APOL5_chr22_35712872_35734483	35717235	A A	AAAAAAAA others(25): Show AAAAAAAAAAAAAAAAAAAATATATATATATAT	upstream_gene_variant upstream_gene_variant	MODIFIER	NA18970.hp1 NA18978.hp1 NA18970.hp1 NA18978.hp1	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0001 a0002c0002t0001	a0002c0002t0001g0001 a0002c0002t0001g0001	2	401	0.0050	32	c.-63 others(41): Show c.-637_-636insAAAAAAAAAAAAAAAAAAATATATATATATAT	APOL5	ENSG00000128313.2	transcript	ENST00000249044.2	protein_coding		636		chr22	TogoVar
APOL5_chr22_35712872_35734483	35717235	A A	AAAAAAAA others(25): Show AAAAAAAAAAAAAAAAAATATATATATATATAT	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00544.hp2 HG00558.hp1 HG00741.hp1 others(15): Show HG00544.hp2 HG00558.hp1 HG00741.hp1 HG02015.hp2 HG03017.hp1 HG03927.hp2 NA18949.hp1 NA18954.hp2 NA18956.hp1 NA18961.hp1 NA18964.hp2 NA18995.hp2 NA18998.hp1 NA19001.hp2 NA19066.hp2 NA19080.hp1 NA19082.hp1 NA19086.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0001 a0002c0002t0001	a0002c0002t0001g0001 a0002c0002t0001g0006 a0002c0002t0001g0026 others(2): Show a0002c0002t0001g0001 a0002c0002t0001g0006 a0002c0002t0001g0026 a0002c0002t0001g0028 a0002c0002t0001g0102	18	401	0.0449	32	c.-63 others(41): Show c.-637_-636insAAAAAAAAAAAAAAAAATATATATATATATAT	APOL5	ENSG00000128313.2	transcript	ENST00000249044.2	protein_coding		636		chr22	TogoVar
APOL5_chr22_35712872_35734483	35717235	A A	AAAAAAAA others(25): Show AAAAAAAAAAAAAAAATATATATATATATATAT	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01069.hp2 HG01071.hp1 NA18980.hp2 HG01069.hp2 HG01071.hp1 NA18980.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0001 a0002c0002t0001	a0002c0002t0001g0001 a0002c0002t0001g0033 a0002c0002t0001g0001 a0002c0002t0001g0033	3	401	0.0075	32	c.-63 others(41): Show c.-637_-636insAAAAAAAAAAAAAAATATATATATATATATAT	APOL5	ENSG00000128313.2	transcript	ENST00000249044.2	protein_coding		636		chr22	TogoVar
APOL5_chr22_35712872_35734483	35717235	A A	AAAAAAAA others(25): Show AAAAAAAAAAAAAATATATATATATATATATAT	upstream_gene_variant upstream_gene_variant	MODIFIER	NA19075.hp1 NA19075.hp1	a0010 a0010	a0010c0017 a0010c0017	a0010c0017t0001 a0010c0017t0001	a0010c0017t0001g0001 a0010c0017t0001g0001	1	401	0.0025	32	c.-63 others(41): Show c.-637_-636insAAAAAAAAAAAAATATATATATATATATATAT	APOL5	ENSG00000128313.2	transcript	ENST00000249044.2	protein_coding		636		chr22	TogoVar
APOL5_chr22_35712872_35734483	35717235	A A	AAAAAAAA others(25): Show AAAAAAAAAAAATATATATATATATATATATAT	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02027.hp1 HG02027.hp1	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0001 a0002c0002t0001	a0002c0002t0001g0001 a0002c0002t0001g0001	1	401	0.0025	32	c.-63 others(41): Show c.-637_-636insAAAAAAAAAAATATATATATATATATATATAT	APOL5	ENSG00000128313.2	transcript	ENST00000249044.2	protein_coding		636		chr22	TogoVar
APOL5_chr22_35712872_35734483	35717235	A A	AAAAAAAA others(25): Show AAAAAAAATATATATATATATATATATATATAT	upstream_gene_variant upstream_gene_variant	MODIFIER	HG03225.hp2 HG03225.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0001 a0002c0002t0001	a0002c0002t0001g0119 a0002c0002t0001g0119	1	401	0.0025	32	c.-63 others(41): Show c.-637_-636insAAAAAAATATATATATATATATATATATATAT	APOL5	ENSG00000128313.2	transcript	ENST00000249044.2	protein_coding		636		chr22	TogoVar
APOOL_chrX_84998877_85098315	85088169	C C	CATATATG others(25): Show CATATATGTATAAATACATACATATTTATACAT	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG01074.hp1 HG01106.hp1 HG01175.hp2 others(33): Show HG01074.hp1 HG01106.hp1 HG01175.hp2 HG01257.hp1 HG01258.hp1 HG01346.hp2 HG01358.hp1 HG01361.hp1 HG01928.hp1 HG02004.hp1 HG02004.hp2 HG02015.hp1 HG02074.hp1 HG02135.hp1 HG02273.hp2 HG03704.hp1 HG03710.hp1 HG03831.hp1 NA18950.hp2 NA18954.hp2 NA18963.hp2 NA18969.hp1 NA18971.hp1 NA18975.hp2 NA18982.hp1 NA18992.hp1 NA19001.hp2 NA19006.hp1 NA19057.hp2 NA19066.hp1 NA19068.hp1 NA19070.hp1 NA19086.hp1 NA19091.hp1 NA20752.hp1 homoSapiens_chm13v2.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0024 a0001c0001t0025 a0001c0001t0026 others(28): Show a0001c0001t0024 a0001c0001t0025 a0001c0001t0026 a0001c0001t0027 a0001c0001t0028 a0001c0001t0045 a0001c0001t0046 a0001c0001t0067 a0001c0001t0068 a0001c0001t0070 a0001c0001t0074 a0001c0001t0075 a0001c0001t0076 a0001c0001t0081 a0001c0001t0083 a0001c0001t0084 a0001c0001t0085 a0001c0001t0086 a0001c0001t0088 a0001c0001t0089 a0001c0001t0090 a0001c0001t0091 a0001c0001t0092 a0001c0001t0093 a0001c0001t0094 a0001c0001t0095 a0001c0001t0096 a0001c0001t0097 a0001c0001t0098 a0001c0001t0099 a0001c0001t0113	a0001c0001t0024g0004 a0001c0001t0025g0046 a0001c0001t0025g0049 others(32): Show a0001c0001t0024g0004 a0001c0001t0025g0046 a0001c0001t0025g0049 a0001c0001t0026g0078 a0001c0001t0026g0080 a0001c0001t0027g0035 a0001c0001t0027g0058 a0001c0001t0028g0042 a0001c0001t0028g0068 a0001c0001t0045g0044 a0001c0001t0046g0040 a0001c0001t0067g0083 a0001c0001t0068g0082 a0001c0001t0070g0081 a0001c0001t0074g0065 a0001c0001t0075g0079 a0001c0001t0076g0031 a0001c0001t0081g0062 a0001c0001t0083g0039 a0001c0001t0084g0017 a0001c0001t0085g0037 a0001c0001t0086g0034 a0001c0001t0088g0050 a0001c0001t0089g0057 a0001c0001t0090g0010 a0001c0001t0091g0059 a0001c0001t0092g0076 a0001c0001t0093g0077 a0001c0001t0094g0032 a0001c0001t0095g0067 a0001c0001t0096g0038 a0001c0001t0097g0060 a0001c0001t0098g0156 a0001c0001t0099g0036 a0001c0001t0113g0043	36	256	0.1406	32	c.52 others(41): Show c.527_*558dupTATGTATAAATACATACATATTTATACATATA	APOOL	ENSG00000155008.16	transcript	ENST00000373173.7	protein_coding	9/9	559	INFO_REALIGN_3_PRIME	chrX	TogoVar
APOO_chrX_23828353_23912938	23829569	A A	AATATATA others(25): Show AATATATATATATGTATATATATATATATATAT	downstream_gene_variant downstream_gene_variant	MODIFIER	NA18957.hp1 NA18957.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0046 a0001c0001t0001g0046	1	269	0.0037	32	c.40 others(43): Show c.4072_*4073insATATATATATATATATATACATATATATATAT	APOO	ENSG00000184831.14	transcript	ENST00000379226.9	protein_coding		3783		chrX	TogoVar
APOO_chrX_23828353_23912938	23849583	T T	TAAAAAAA others(25): Show TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG02717.hp1 NA20129.hp1 HG02717.hp1 NA20129.hp1	a0001 a0005 a0001 a0005	a0001c0001 a0005c0003 a0001c0001 a0005c0003	a0001c0001t0003 a0005c0003t0003 a0001c0001t0003 a0005c0003t0003	a0001c0001t0003g0265 a0005c0003t0003g0225 a0001c0001t0003g0265 a0005c0003t0003g0225	2	269	0.0074	32	c.561 others(49): Show c.561+6718_561+6719insTTTTTTTTTTTTTTTTTTTTTTTTTTTT TTTT	APOO	ENSG00000184831.14	transcript	ENST00000379226.9	protein_coding	7/8			chrX	TogoVar
APPL1_chr3_57222729_57278471	57262385	C C	CTTTTTTT others(25): Show CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG00741.hp1 NA20805.hp1 HG00741.hp1 NA20805.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0135 a0001c0001t0002g0137 a0001c0001t0002g0135 a0001c0001t0002g0137	2	266	0.0075	32	c.184 others(51): Show c.1842+1636_1842+1637insTTTTTTTTTTTTTTTTTTTTTTTTTT TTTTTT	APPL1	ENSG00000157500.12	transcript	ENST00000288266.8	protein_coding	19/21		INFO_REALIGN_3_PRIME	chr3	TogoVar
AQP11_chr11_77584953_77615356	77596537	A A	AATATATA others(25): Show AATATATATATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG02055.hp1 HG03654.hp2 HG03710.hp1 others(1): Show HG02055.hp1 HG03654.hp2 HG03710.hp1 NA18973.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0078 a0001c0001t0001g0179 a0001c0001t0001g0195 others(1): Show a0001c0001t0001g0078 a0001c0001t0001g0179 a0001c0001t0001g0195 a0001c0001t0001g0216	4	432	0.0093	32	c.619 others(49): Show c.619+5952_619+5953insATATATATATATATATATATATATATAT ATAT	AQP11	ENSG00000178301.4	transcript	ENST00000313578.4	protein_coding	1/2		INFO_REALIGN_3_PRIME	chr11	TogoVar
AQP2_chr12_49945737_49963878	49958536	C C	CCCGGTCA others(25): Show CCCGGTCAGTCAGAGAACAGAGATCACACAACA	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	NA19058.hp1 NA19058.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0043 a0001c0002t0043	a0001c0002t0043g0002 a0001c0002t0043g0002	1	442	0.0023	32	c.29 others(43): Show c.2957_*2958insACACCGGTCAGTCAGAGAACAGAGATCACACA	AQP2	ENSG00000167580.8	transcript	ENST00000199280.4	protein_coding	4/4	2958	INFO_REALIGN_3_PRIME	chr12	TogoVar
AQP5_chr12_49956872_49970682	49958536	C C	CCCGGTCA others(25): Show CCCGGTCAGTCAGAGAACAGAGATCACACAACA	upstream_gene_variant upstream_gene_variant	MODIFIER	NA19058.hp1 NA19058.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0044 a0001c0001t0001g0044	1	466	0.0022	32	c.-34 others(43): Show c.-3482_-3481insCCGGTCAGTCAGAGAACAGAGATCACACAACA	AQP5	ENSG00000161798.7	transcript	ENST00000293599.7	protein_coding		3335		chr12	TogoVar
ARFGAP1_chr20_63267813_63294790	63288366	T T	TACTGGCG others(25): Show TACTGGCGCTCACGCTGCCATCCGACCACCCTC	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	NA18998.hp2 NA18998.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0010 a0001c0001t0010	a0001c0001t0010g0195 a0001c0001t0010g0195	1	342	0.0029	32	c.49 others(41): Show c.494_*525dupACTGGCGCTCACGCTGCCATCCGACCACCCTC	ARFGAP1	ENSG00000101199.13	transcript	ENST00000370283.9	protein_coding	13/13	526	INFO_REALIGN_3_PRIME	chr20	TogoVar
ARFGEF1_chr8_67192658_67348781	67339795	C C	CGGGGGGG others(25): Show CGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	intron_variant intron_variant	MODIFIER	HG02056.hp1 HG02056.hp1	a0002 a0002	a0002c0012 a0002c0012	a0002c0012t0001 a0002c0012t0001	a0002c0012t0001g0178 a0002c0012t0001g0178	1	208	0.0048	32	c.124 others(49): Show c.124+3368_124+3369insCCCCCCCCCCCCCCCCCCCCCCCCCCCC CCCC	ARFGEF1	ENSG00000066777.9	transcript	ENST00000262215.8	protein_coding	1/38			chr8	TogoVar
ARFGEF2_chr20_48916711_49041693	48963175	C C	CAAAAAAA others(25): Show CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG02486.hp1 HG02486.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0010 a0001c0001t0002g0010	1	352	0.0028	32	c.839 others(47): Show c.839-641_839-640insAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA AA	ARFGEF2	ENSG00000124198.10	transcript	ENST00000371917.5	protein_coding	6/38		INFO_REALIGN_3_PRIME	chr20	TogoVar
ARFIP1_chr4_152774954_152917357	152808283	A A	ATTTTTTT others(25): Show ATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG01261.hp1 HG03688.hp2 HG01261.hp1 HG03688.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0003 a0001c0001t0002 a0001c0001t0003	a0001c0001t0002g0033 a0001c0001t0003g0341 a0001c0001t0002g0033 a0001c0001t0003g0341	2	342	0.0059	32	c.-9- others(49): Show c.-9-21339_-9-21308dupTTTTTTTTTTTTTTTTTTTTTTTTTTTT TTTT	ARFIP1	ENSG00000164144.16	transcript	ENST00000353617.7	protein_coding	1/8		INFO_REALIGN_3_PRIME	chr4	TogoVar
ARGLU1_chr13_106536673_106573137	106570466	T T	TGCCCCGC others(25): Show TGCCCCGCCTCCTAATACCATCGTCTCCCGGCA	upstream_gene_variant upstream_gene_variant	MODIFIER	NA18986.hp1 NA18986.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0054 a0001c0001t0001g0054	1	376	0.0027	32	c.-25 others(43): Show c.-2548_-2547insTGCCGGGAGACGATGGTATTAGGAGGCGGGGC	ARGLU1	ENSG00000134884.15	transcript	ENST00000400198.8	protein_coding		2330		chr13	TogoVar
ARGLU1_chr13_106536673_106573137	106570648	A A	ATGTTCCA others(25): Show ATGTTCCAGCAGCCCCACCTCCTAATACCTTTG	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02486.hp1 HG03471.hp1 HG02486.hp1 HG03471.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0130 a0001c0001t0002g0132 a0001c0001t0002g0130 a0001c0001t0002g0132	2	376	0.0053	32	c.-27 others(43): Show c.-2730_-2729insCAAAGGTATTAGGAGGTGGGGCTGCTGGAACA	ARGLU1	ENSG00000134884.15	transcript	ENST00000400198.8	protein_coding		2512		chr13	TogoVar
ARHGAP10_chr4_147727088_148077776	147783794	A A	ATGTATTA others(25): Show ATGTATTATATTTATATAACACACATTAAATTG	intron_variant intron_variant	MODIFIER	HG00558.hp2 HG02280.hp2 HG02622.hp1 others(1): Show HG00558.hp2 HG02280.hp2 HG02622.hp1 NA19012.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0038 a0001c0001t0001g0070 a0001c0001t0001g0077 others(1): Show a0001c0001t0001g0038 a0001c0001t0001g0070 a0001c0001t0001g0077 a0001c0001t0001g0094	4	106	0.0377	32	c.155 others(51): Show c.155-38777_155-38746dupAATTGTGTATTATATTTATATAACAC ACATTA	ARHGAP10	ENSG00000071205.12	transcript	ENST00000336498.8	protein_coding	1/22		INFO_REALIGN_3_PRIME	chr4	TogoVar
ARHGAP10_chr4_147727088_148077776	148039368	A A	ATTTTTTT others(25): Show ATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG03209.hp1 HG03209.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0005 a0001c0002t0001g0005	1	106	0.0094	32	c.186 others(51): Show c.1868-7495_1868-7494insTTTTTTTTTTTTTTTTTTTTTTTTTT TTTTTT	ARHGAP10	ENSG00000071205.12	transcript	ENST00000336498.8	protein_coding	19/22		INFO_REALIGN_3_PRIME	chr4	TogoVar
ARHGAP15_chr2_143124419_143773352	143165960	G G	GAGAAAGA others(25): Show GAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA	intron_variant intron_variant	MODIFIER	HG01515.hp1 HG01517.hp2 HG01515.hp1 HG01517.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0043 a0001c0002t0001g0044 a0001c0002t0001g0043 a0001c0002t0001g0044	2	162	0.0124	32	c.165 others(51): Show c.165+10318_165+10349dupAGAAAGAAAGAAAGAAAGAAAGAAAG AAAGAA	ARHGAP15	ENSG00000075884.14	transcript	ENST00000295095.11	protein_coding	2/13		INFO_REALIGN_3_PRIME	chr2	TogoVar
ARHGAP15_chr2_143124419_143773352	143166001	A A	AGAAAGAA others(25): Show AGAAAGAAAGAAAGAAAGAAAGAAAGAAGGAAG	intron_variant intron_variant	MODIFIER	HG02486.hp2 HG02486.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0006 a0001c0001t0001g0006	1	162	0.0062	32	c.165 others(51): Show c.165+10349_165+10350insAGAAAGAAAGAAAGAAAGAAAGAAGG AAGGAA	ARHGAP15	ENSG00000075884.14	transcript	ENST00000295095.11	protein_coding	2/13		INFO_REALIGN_3_PRIME	chr2	TogoVar
ARHGAP15_chr2_143124419_143773352	143470658	T T	TACACATG others(25): Show TACACATGTATATATGTGTGTGTATATATATAC	intron_variant intron_variant	MODIFIER	HG03491.hp2 HG03491.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0067 a0001c0001t0001g0067	1	162	0.0062	32	c.704 others(51): Show c.704-16712_704-16711insCATGTATATATGTGTGTGTATATATA TACACA	ARHGAP15	ENSG00000075884.14	transcript	ENST00000295095.11	protein_coding	8/13		INFO_REALIGN_3_PRIME	chr2	TogoVar
ARHGAP15_chr2_143124419_143773352	143542682	G G	GATATATA others(25): Show GATATATAATATCACATATATAATATATATGAT	intron_variant intron_variant	MODIFIER	HG02280.hp1 HG03209.hp2 HG03831.hp2 others(2): Show HG02280.hp1 HG03209.hp2 HG03831.hp2 NA19043.hp2 homoSapiens_chm13v2.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0001 a0001c0002t0001 a0001c0001t0001 a0001c0002t0001	a0001c0001t0001g0119 a0001c0001t0001g0123 a0001c0001t0001g0138 others(2): Show a0001c0001t0001g0119 a0001c0001t0001g0123 a0001c0001t0001g0138 a0001c0002t0001g0012 a0001c0002t0001g0036	5	162	0.0309	32	c.926 others(51): Show c.926-13719_926-13718insATATCACATATATAATATATATGATA TATATA	ARHGAP15	ENSG00000075884.14	transcript	ENST00000295095.11	protein_coding	10/13		INFO_REALIGN_3_PRIME	chr2	TogoVar
ARHGAP15_chr2_143124419_143773352	143656934	G G	GGTGTGTG others(25): Show GGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT	intron_variant intron_variant	MODIFIER	NA18747.hp1 NA18747.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0024 a0001c0001t0001g0024	1	162	0.0062	32	c.113 others(53): Show c.1138+32676_1138+32707dupGTGTGTGTGTGTGTGTGTGTGTGT GTGTGTGT	ARHGAP15	ENSG00000075884.14	transcript	ENST00000295095.11	protein_coding	12/13		INFO_REALIGN_3_PRIME	chr2	TogoVar
ARHGAP15_chr2_143124419_143773352	143673758	G G	GTATATAT others(25): Show GTATATATATATATATATATATATATATATATA	intron_variant intron_variant	MODIFIER	HG02109.hp2 HG02109.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0062 a0001c0001t0001g0062	1	162	0.0062	32	c.113 others(53): Show c.1139-29635_1139-29634insTATATATATATATATATATATATA TATATATA	ARHGAP15	ENSG00000075884.14	transcript	ENST00000295095.11	protein_coding	12/13		INFO_REALIGN_3_PRIME	chr2	TogoVar
ARHGAP15_chr2_143124419_143773352	143763625	A A	AATAAATT others(25): Show AATAAATTGCATATATATGCAAATTGCATATAT	intron_variant intron_variant	MODIFIER	HG01261.hp1 HG03486.hp2 HG01261.hp1 HG03486.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0039 a0001c0001t0001g0106 a0001c0001t0001g0039 a0001c0001t0001g0106	2	162	0.0124	32	c.124 others(51): Show c.1245-4333_1245-4302dupATATAAATTGCATATATATGCAAATT GCATAT	ARHGAP15	ENSG00000075884.14	transcript	ENST00000295095.11	protein_coding	13/13		INFO_REALIGN_3_PRIME	chr2	TogoVar
ARHGAP15_chr2_143124419_143773352	143763627	T T	TAAATTGC others(25): Show TAAATTGCATATATATGCAAATTGCATATATGC	intron_variant intron_variant	MODIFIER	HG03225.hp2 HG03225.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0092 a0001c0001t0001g0092	1	162	0.0062	32	c.124 others(51): Show c.1245-4332_1245-4331insGCAAATTGCATATATATGCAAATTGC ATATAT	ARHGAP15	ENSG00000075884.14	transcript	ENST00000295095.11	protein_coding	13/13		INFO_REALIGN_3_PRIME	chr2	TogoVar
ARHGAP17_chr16_24914389_25020369	24961911	T T	TTATATAT others(25): Show TTATATATATATATATATATATATATATATATA	intron_variant intron_variant	MODIFIER	HG02965.hp1 HG02965.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0118 a0001c0001t0001g0118	1	240	0.0042	32	c.574 others(49): Show c.574-1933_574-1932insTATATATATATATATATATATATATATA TATA	ARHGAP17	ENSG00000140750.17	transcript	ENST00000289968.11	protein_coding	7/19			chr16	TogoVar
ARHGAP18_chr6_129571132_129715177	129712044	T T	TTCCAGGC others(25): Show TTCCAGGCTTTTGAGCAGATCACTGGGCATTCC	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02622.hp1 HG02622.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0004	a0001c0001t0004g0123 a0001c0001t0004g0123	1	238	0.0042	32	c.-19 others(43): Show c.-1909_-1908insGGAATGCCCAGTGATCTGCTCAAAAGCCTGGA	ARHGAP18	ENSG00000146376.11	transcript	ENST00000368149.3	protein_coding		1868		chr6	TogoVar
ARHGAP20_chr11_110572043_110717437	110687035	C C	CATATATA others(25): Show CATATATATATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG01433.hp2 HG02155.hp2 HG02622.hp2 others(4): Show HG01433.hp2 HG02155.hp2 HG02622.hp2 HG03579.hp2 HG03688.hp2 NA18983.hp1 NA18994.hp2	a0001 a0006 a0001 a0006	a0001c0001 a0006c0007 a0001c0001 a0006c0007	a0001c0001t0001 a0001c0001t0003 a0001c0001t0006 others(1): Show a0001c0001t0001 a0001c0001t0003 a0001c0001t0006 a0006c0007t0010	a0001c0001t0001g0154 a0001c0001t0001g0157 a0001c0001t0001g0163 others(4): Show a0001c0001t0001g0154 a0001c0001t0001g0157 a0001c0001t0001g0163 a0001c0001t0003g0013 a0001c0001t0003g0216 a0001c0001t0006g0186 a0006c0007t0010g0147	7	226	0.0310	32	c.188 others(49): Show c.188+3511_188+3512insATATATATATATATATATATATATATAT ATAT	ARHGAP20	ENSG00000137727.13	transcript	ENST00000683387.1	protein_coding	2/14			chr11	TogoVar
ARHGAP21_chr10_24578614_24728887	24628810	T T	TATATATA others(25): Show TATATATATACACACATATATGTACATATATAC	intron_variant intron_variant	MODIFIER	HG03209.hp2 HG03209.hp2	a0005 a0005	a0005c0005 a0005c0005	a0005c0005t0001 a0005c0005t0001	a0005c0005t0001g0102 a0005c0005t0001g0102	1	352	0.0028	32	c.495 others(49): Show c.495+1185_495+1186insGTATATATGTACATATATGTGTGTATAT ATAT	ARHGAP21	ENSG00000107863.20	transcript	ENST00000396432.7	protein_coding	7/25			chr10	TogoVar
ARHGAP21_chr10_24578614_24728887	24628816	C C	CATATATA others(25): Show CATATATACACACATATATACATATATATACAT	intron_variant intron_variant	MODIFIER	HG02451.hp2 HG02818.hp1 HG02451.hp2 HG02818.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0142 a0001c0001t0001g0143 a0001c0001t0001g0142 a0001c0001t0001g0143	2	352	0.0057	32	c.495 others(49): Show c.495+1179_495+1180insATGTATATATATGTATATATGTGTGTAT ATAT	ARHGAP21	ENSG00000107863.20	transcript	ENST00000396432.7	protein_coding	7/25			chr10	TogoVar
ARHGAP21_chr10_24578614_24728887	24628982	A A	ATATATAT others(25): Show ATATATATATATATATATATATATATATATTTT	intron_variant intron_variant	MODIFIER	HG01257.hp1 HG01257.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0263 a0001c0001t0001g0263	1	352	0.0028	32	c.495 others(49): Show c.495+1013_495+1014insAAAATATATATATATATATATATATATA TATA	ARHGAP21	ENSG00000107863.20	transcript	ENST00000396432.7	protein_coding	7/25			chr10	TogoVar
ARHGAP21_chr10_24578614_24728887	24628982	A A	ATATATAT others(25): Show ATATATATATATATATATATATATATTTTTTTT	intron_variant intron_variant	MODIFIER	HG00438.hp2 HG00438.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0001 a0002c0002t0001	a0002c0002t0001g0120 a0002c0002t0001g0120	1	352	0.0028	32	c.495 others(49): Show c.495+1013_495+1014insAAAAAAAATATATATATATATATATATA TATA	ARHGAP21	ENSG00000107863.20	transcript	ENST00000396432.7	protein_coding	7/25			chr10	TogoVar
ARHGAP23_chr17_38423464_38517385	38513074	T T	TTAAATAT others(25): Show TTAAATATATATATATATATATATATATATATA	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00140.hp2 HG00544.hp2 HG01346.hp1 others(5): Show HG00140.hp2 HG00544.hp2 HG01346.hp1 HG02004.hp1 HG02148.hp2 NA18948.hp1 NA19079.hp1 NA19085.hp2	a0001 a0001	a0001c0001 a0001c0007 a0001c0001 a0001c0007	a0001c0001t0001 a0001c0007t0003 a0001c0001t0001 a0001c0007t0003	a0001c0001t0001g0166 a0001c0001t0001g0207 a0001c0001t0001g0231 others(5): Show a0001c0001t0001g0166 a0001c0001t0001g0207 a0001c0001t0001g0231 a0001c0001t0001g0240 a0001c0001t0001g0264 a0001c0001t0001g0268 a0001c0001t0001g0277 a0001c0007t0003g0018	8	309	0.0259	32	c.21 others(43): Show c.2102_*2103insTAAATATATATATATATATATATATATATATA	ARHGAP23	ENSG00000275832.5	transcript	ENST00000622683.5	protein_coding		690		chr17	TogoVar
ARHGAP24_chr4_85470150_86007666	85813818	T T	TTATATAT others(25): Show TTATATATATATATATATATATATATATATATA	intron_variant intron_variant	MODIFIER	HG00639.hp1 HG00639.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0021 a0001c0001t0021	a0001c0001t0021g0054 a0001c0001t0021g0054	1	108	0.0093	32	c.268 others(51): Show c.268+91871_268+91872insATATATATATATATATATATATATAT ATATAT	ARHGAP24	ENSG00000138639.18	transcript	ENST00000395184.6	protein_coding	3/9		INFO_REALIGN_3_PRIME	chr4	TogoVar
ARHGAP26_chr5_142765377_143234007	142949196	A A	AGAGAGGA others(25): Show AGAGAGGAGAGAGAGAGAGAGAGAGAGAGAGAG	intron_variant intron_variant	MODIFIER	NA18994.hp2 NA18994.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0016 a0001c0001t0002g0016	1	198	0.0051	32	c.110 others(53): Show c.1107+17076_1107+17077insGAGAGAGAGAGAGAGAGAGAGAGA GAGGAGAG	ARHGAP26	ENSG00000145819.18	transcript	ENST00000645722.2	protein_coding	11/22		INFO_REALIGN_3_PRIME	chr5	TogoVar
ARHGAP26_chr5_142765377_143234007	142949221	G G	GAGAGAGA others(25): Show GAGAGAGAGGAGAGAGAGAGAGAGAGAGAGAGA	intron_variant intron_variant	MODIFIER	NA19081.hp1 NA19081.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0119 a0001c0001t0003g0119	1	198	0.0051	32	c.110 others(53): Show c.1107+17096_1107+17097insAGAGAGAGGAGAGAGAGAGAGAGA GAGAGAGA	ARHGAP26	ENSG00000145819.18	transcript	ENST00000645722.2	protein_coding	11/22			chr5	TogoVar
ARHGAP26_chr5_142765377_143234007	142963198	A A	ATATATAT others(25): Show ATATATATATATATATATGTGTGTGTGTGTGTG	intron_variant intron_variant	MODIFIER	NA19058.hp1 NA19058.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0003 a0001c0002t0003	a0001c0002t0003g0032 a0001c0002t0003g0032	1	198	0.0051	32	c.110 others(53): Show c.1107+31074_1107+31075insATATATATATATATATGTGTGTGT GTGTGTGT	ARHGAP26	ENSG00000145819.18	transcript	ENST00000645722.2	protein_coding	11/22		INFO_REALIGN_3_PRIME	chr5	TogoVar
ARHGAP26_chr5_142765377_143234007	142963198	A A	ATATATAT others(25): Show ATATATATATATATATGTGTGTGTGTGTGTGTG	intron_variant intron_variant	MODIFIER	HG02165.hp1 HG02165.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0116 a0001c0001t0001g0116	1	198	0.0051	32	c.110 others(53): Show c.1107+31074_1107+31075insATATATATATATATGTGTGTGTGT GTGTGTGT	ARHGAP26	ENSG00000145819.18	transcript	ENST00000645722.2	protein_coding	11/22		INFO_REALIGN_3_PRIME	chr5	TogoVar
ARHGAP26_chr5_142765377_143234007	143012552	C C	CATACATA others(25): Show CATACATACATACATACATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG01934.hp1 HG01934.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0042 a0001c0001t0042	a0001c0001t0042g0042 a0001c0001t0042g0042	1	198	0.0051	32	c.110 others(51): Show c.1108-1525_1108-1524insCATACATACATACATATATATATATA TATATA	ARHGAP26	ENSG00000145819.18	transcript	ENST00000645722.2	protein_coding	11/22		INFO_REALIGN_3_PRIME	chr5	TogoVar

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