Joint Open Genome and Omics Platform (JoGo)

Search by Variant

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Chr

Chromosome name (e.g., chr11).

Snpeff genename

Exact SnpEff gene name.

Sampleids

Target sampleid (e.g. HG02615).

Snpeff haplotype class

Haplotype-annotation class (e.g., ahapid, ahapid+chapid).

Snpeff annotation impact

Exact impact level (e.g., HIGH, MODERATE, LOW).

Snpeff annotation impact detail

Keyword match in SnpEff annotation.

Hapid

One or more haplotype IDs (comma-separated; e.g., a0001, a01, a0001c0001, a01c02, a1c2, a0001c0001t0005, a0001c0001t0005g0018).

Samplehapid

Sample haplotype IDs to include (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

No_hapid

Haplotype IDs to exclude (comma-separated; e.g., a0001, a0002, a0001c0001, a0001c0001t0005, a1, a01).

No_samplehapid

Sample haplotype IDs to exclude (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

Start

Start position (GRCh38).

End

End position (GRCh38).

Minac

Minimum alternate allele count (≥).

Maxac

Maximum alternate allele count (≤).

Minlen

Minimum variant length (≥).

Maxlen

Maximum variant length (≤).

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⚠️ Results limited to 10,000 hits. Refine your search for more specific results.

regionname	pos	ref	alt	annotation	impact	samples	ahapids	achapids	acthapids	actghapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	external
OR10T2_chr1_158393522_158404466	158403849	T T	TTTTTAAA others(25): Show TTTTTAAAAATTTTAGAAACCTATTGACAAAAA	upstream_gene_variant upstream_gene_variant	MODIFIER	NA18964.hp2 NA18964.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0000 a0002c0002t0000	a0002c0002t0000g0000 a0002c0002t0000g0000	1	442	0.0023	32	c.-43 others(43): Show c.-4384_-4383insTTTTTGTCAATAGGTTTCTAAAATTTTTAAAA	OR10T2	ENSG00000186306.1	transcript	ENST00000334438.1	protein_coding		4384		chr1	TogoVar
OR10W1_chr11_58261792_58273260	58270386	C C	CCTTTCTT others(25): Show CCTTTCTTTCTCTCTTTCTTTCTTTCTTTCTTT	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02809.hp1 HG02809.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0000 a0001c0001t0001g0000	1	362	0.0028	32	c.-25 others(43): Show c.-2529_-2528insAAAGAAAGAAAGAAAGAAAGAGAGAAAGAAAG	OR10W1	ENSG00000172772.3	transcript	ENST00000395079.2	protein_coding		2127		chr11	TogoVar
OR11H4_chr14_20234286_20249349	20237522	A A	AAATATAT others(25): Show AAATATATATATTATAAAATATATATAATATAT	upstream_gene_variant upstream_gene_variant	MODIFIER	HG06807.hp2 HG06807.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0140 a0001c0001t0002g0140	1	439	0.0023	32	c.-18 others(43): Show c.-1821_-1820insAATATATATATTATAAAATATATATAATATAT	OR11H4	ENSG00000176198.4	transcript	ENST00000641082.1	protein_coding		1763		chr14	TogoVar
OR11H4_chr14_20234286_20249349	20238184	T T	TAATATAT others(25): Show TAATATATAAATTTATATATTTATATATAAATA	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01255.hp1 HG01255.hp2 HG02055.hp1 others(22): Show HG01255.hp1 HG01255.hp2 HG02055.hp1 HG02055.hp2 HG02074.hp2 HG02258.hp2 HG02451.hp1 HG02717.hp1 HG02895.hp2 HG02896.hp1 HG02897.hp1 HG02897.hp2 HG02965.hp2 HG02976.hp2 HG03139.hp1 HG03486.hp1 HG03831.hp1 HG04199.hp1 NA18522.hp2 NA18906.hp1 NA18971.hp2 NA19010.hp2 NA19030.hp2 NA19077.hp2 NA19085.hp1	a0001 a0002 a0003 others(1): Show a0001 a0002 a0003 a0004	a0001c0001 a0002c0002 a0003c0005 others(1): Show a0001c0001 a0002c0002 a0003c0005 a0004c0006	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(3): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0002c0002t0001 a0003c0005t0002 a0004c0006t0002	a0001c0001t0001g0059 a0001c0001t0001g0061 a0001c0001t0001g0244 others(14): Show a0001c0001t0001g0059 a0001c0001t0001g0061 a0001c0001t0001g0244 a0001c0001t0001g0245 a0001c0001t0001g0249 a0001c0001t0001g0251 a0001c0001t0002g0021 a0001c0001t0002g0062 a0001c0001t0002g0242 a0001c0001t0002g0243 a0001c0001t0002g0246 a0001c0001t0002g0252 a0001c0001t0002g0253 a0001c0001t0003g0067 a0002c0002t0001g0241 a0003c0005t0002g0060 a0004c0006t0002g0058	25	439	0.0570	32	c.-11 others(43): Show c.-1159_-1158insAATATATAAATTTATATATTTATATATAAATA	OR11H4	ENSG00000176198.4	transcript	ENST00000641082.1	protein_coding		1101		chr14	TogoVar
OR11H4_chr14_20234286_20249349	20247813	A A	ACCTATCT others(25): Show ACCTATCTACCTGTGCTCTACTGACCTCTAATG	downstream_gene_variant downstream_gene_variant	MODIFIER	NA19076.hp1 NA19076.hp1	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0001 a0001c0003t0001	a0001c0003t0001g0002 a0001c0003t0001g0002	1	439	0.0023	32	c.40 others(43): Show c.4047_*4048insCCTATCTACCTGTGCTCTACTGACCTCTAATG	OR11H4	ENSG00000176198.4	transcript	ENST00000641082.1	protein_coding		3465		chr14	TogoVar
OR13C4_chr9_104521253_104532209	104521803	T T	TACACACA others(25): Show TACACACACACACACACACACACACACACACAC	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02257.hp2 HG02257.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0000 a0001c0001t0000	a0001c0001t0000g0000 a0001c0001t0000g0000	1	458	0.0022	32	c.44 others(43): Show c.4449_*4450insGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT	OR13C4	ENSG00000148136.5	transcript	ENST00000277216.3	protein_coding		4449		chr9	TogoVar
OR13D1_chr9_104689518_104700462	104696103	A A	AAAAGAAA others(25): Show AAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02922.hp1 HG02922.hp1	a0001 a0001	a0001c0004 a0001c0004	a0001c0004t0000 a0001c0004t0000	a0001c0004t0000g0000 a0001c0004t0000g0000	1	396	0.0025	32	c.64 others(41): Show c.641_*642insAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	OR13D1	ENSG00000179055.8	transcript	ENST00000641530.1	protein_coding		642		chr9	TogoVar
OR13D1_chr9_104689518_104700462	104696107	A A	AAAAGAAA others(25): Show AAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	downstream_gene_variant downstream_gene_variant	MODIFIER	NA18942.hp2 NA18942.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0000 a0002c0002t0000	a0002c0002t0000g0000 a0002c0002t0000g0000	1	396	0.0025	32	c.64 others(41): Show c.645_*646insAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	OR13D1	ENSG00000179055.8	transcript	ENST00000641530.1	protein_coding		646		chr9	TogoVar
OR13D1_chr9_104689518_104700462	104696164	A A	AAAGAAAG others(25): Show AAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGG	downstream_gene_variant downstream_gene_variant	MODIFIER	NA19055.hp1 NA19055.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0000 a0001c0001t0000	a0001c0001t0000g0000 a0001c0001t0000g0000	1	396	0.0025	32	c.70 others(41): Show c.702_*703insAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGG	OR13D1	ENSG00000179055.8	transcript	ENST00000641530.1	protein_coding		703		chr9	TogoVar
OR1E1_chr17_3392104_3403410	3399162	A A	AAAAGAAA others(25): Show AAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00408.hp2 HG02630.hp1 NA18944.hp2 others(1): Show HG00408.hp2 HG02630.hp1 NA18944.hp2 NA18971.hp1	a0001 a0001	a0001c0001 a0001c0003 a0001c0001 a0001c0003	a0001c0001t0001 a0001c0003t0001 a0001c0001t0001 a0001c0003t0001	a0001c0001t0001g0000 a0001c0003t0001g0000 a0001c0001t0001g0000 a0001c0003t0001g0000	4	380	0.0105	32	c.-75 others(41): Show c.-753_-752insCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTT	OR1E1	ENSG00000180016.2	transcript	ENST00000322608.2	protein_coding		753		chr17	TogoVar
OR1E1_chr17_3392104_3403410	3399209	A A	AGAAAGAA others(25): Show AGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAG	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02056.hp2 HG02056.hp2	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0001 a0001c0003t0001	a0001c0003t0001g0000 a0001c0003t0001g0000	1	380	0.0026	32	c.-80 others(41): Show c.-800_-799insCTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTC	OR1E1	ENSG00000180016.2	transcript	ENST00000322608.2	protein_coding		800		chr17	TogoVar
OR1E1_chr17_3392104_3403410	3399209	A A	AGAAAGAA others(25): Show AGAAAGAAAGAAAGAAAGAAAGAAAGAAGGAAG	upstream_gene_variant upstream_gene_variant	MODIFIER	NA19001.hp1 NA19062.hp2 NA19001.hp1 NA19062.hp2	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0001 a0001c0003t0001	a0001c0003t0001g0000 a0001c0003t0001g0000	2	380	0.0053	32	c.-80 others(41): Show c.-800_-799insCTTCCTTCTTTCTTTCTTTCTTTCTTTCTTTC	OR1E1	ENSG00000180016.2	transcript	ENST00000322608.2	protein_coding		800		chr17	TogoVar
OR1E1_chr17_3392104_3403410	3399209	A A	AGAAAGAA others(25): Show AGAAAGAAAGAAAGAAAGAAAGAAGGAAGGAAG	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00621.hp2 HG01081.hp1 HG02622.hp2 others(3): Show HG00621.hp2 HG01081.hp1 HG02622.hp2 NA18986.hp2 NA19043.hp1 NA19055.hp1	a0001 a0001	a0001c0003 a0001c0005 a0001c0003 a0001c0005	a0001c0003t0001 a0001c0005t0001 a0001c0003t0001 a0001c0005t0001	a0001c0003t0001g0000 a0001c0005t0001g0000 a0001c0003t0001g0000 a0001c0005t0001g0000	6	380	0.0158	32	c.-80 others(41): Show c.-800_-799insCTTCCTTCCTTCTTTCTTTCTTTCTTTCTTTC	OR1E1	ENSG00000180016.2	transcript	ENST00000322608.2	protein_coding		800		chr17	TogoVar
OR1E1_chr17_3392104_3403410	3399211	A A	AAAGAAAG others(25): Show AAAGAAAGAAAGAAAGAAAGAAAGAAGGGAGGG	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00642.hp2 HG00642.hp2	a0006 a0006	a0006c0010 a0006c0010	a0006c0010t0001 a0006c0010t0001	a0006c0010t0001g0000 a0006c0010t0001g0000	1	380	0.0026	32	c.-80 others(41): Show c.-802_-801insCCCTCCCTTCTTTCTTTCTTTCTTTCTTTCTT	OR1E1	ENSG00000180016.2	transcript	ENST00000322608.2	protein_coding		802		chr17	TogoVar
OR1E1_chr17_3392104_3403410	3399258	G G	GAAGGAAG others(25): Show GAAGGAAGGAAGGAAGGAAAGGAAAGGAAAGGA	upstream_gene_variant upstream_gene_variant	MODIFIER	NA19088.hp1 NA19088.hp1	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0001 a0001c0003t0001	a0001c0003t0001g0000 a0001c0003t0001g0000	1	380	0.0026	32	c.-84 others(41): Show c.-849_-848insTCCTTTCCTTTCCTTTCCTTCCTTCCTTCCTT	OR1E1	ENSG00000180016.2	transcript	ENST00000322608.2	protein_coding		849		chr17	TogoVar
OR1E1_chr17_3392104_3403410	3399291	G G	GAAAGAGA others(25): Show GAAAGAGAAAGAAAGAAAGAAAGAAAGAAAGAA	upstream_gene_variant upstream_gene_variant	MODIFIER	NA19005.hp2 NA19005.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0000 a0001c0001t0001g0000	1	380	0.0026	32	c.-88 others(41): Show c.-882_-881insTTCTTTCTTTCTTTCTTTCTTTCTTTCTCTTT	OR1E1	ENSG00000180016.2	transcript	ENST00000322608.2	protein_coding		882		chr17	TogoVar
OR1L6_chr9_122737303_122755783	122744343	A A	ATACTCCC others(25): Show ATACTCCCTGGTTTCATTTGGGCTGTCAGTGTG	intron_variant intron_variant	MODIFIER	HG00280.hp2 HG00741.hp2 HG02886.hp1 others(2): Show HG00280.hp2 HG00741.hp2 HG02886.hp1 NA18906.hp1 NA20300.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0001 a0002c0002t0001	a0002c0002t0001g0014 a0002c0002t0001g0051 a0002c0002t0001g0052 others(1): Show a0002c0002t0001g0014 a0002c0002t0001g0051 a0002c0002t0001g0052 a0002c0002t0001g0053	5	348	0.0144	32	c.-14 others(49): Show c.-14+1995_-14+2026dupTCAGTGTGTACTCCCTGGTTTCATTTGG GCTG	OR1L6	ENSG00000171459.4	transcript	ENST00000304720.3	protein_coding	1/1		INFO_REALIGN_3_PRIME	chr9	TogoVar
OR2L13_chr1_248090184_248106163	248095607	C C	CTTTTTTT others(25): Show CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG01433.hp1 HG01928.hp1 HG01952.hp1 others(6): Show HG01433.hp1 HG01928.hp1 HG01952.hp1 HG02738.hp1 HG04204.hp2 NA18943.hp2 NA18989.hp1 NA18990.hp2 NA19079.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0006 a0001c0001t0001 a0001c0001t0006	a0001c0001t0001g0020 a0001c0001t0001g0106 a0001c0001t0006g0043 a0001c0001t0001g0020 a0001c0001t0001g0106 a0001c0001t0006g0043	9	440	0.0205	32	c.-14 others(49): Show c.-144+370_-144+371insTTTTTTTTTTTTTTTTTTTTTTTTTTTT TTTT	OR2L13	ENSG00000196071.6	transcript	ENST00000358120.4	protein_coding	1/2		INFO_REALIGN_3_PRIME	chr1	TogoVar
OR2L13_chr1_248090184_248106163	248103054	T T	TAATAAAT others(25): Show TAATAAATAAAATAATTATTAATAATTTAATTA	downstream_gene_variant downstream_gene_variant	MODIFIER	NA18944.hp2 NA19054.hp1 NA19055.hp2 others(2): Show NA18944.hp2 NA19054.hp1 NA19055.hp2 NA19074.hp1 NA19079.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0003 a0001c0001t0002g0006 a0001c0001t0002g0003 a0001c0001t0002g0006	5	440	0.0114	32	c.27 others(43): Show c.2740_*2741insAATAAATAAAATAATTATTAATAATTTAATTA	OR2L13	ENSG00000196071.6	transcript	ENST00000358120.4	protein_coding		1892		chr1	TogoVar
OR2L13_chr1_248090184_248106163	248103144	A A	AATTAATT others(25): Show AATTAATTTAATTAAATAATAAATAAATTAATT	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02886.hp1 HG02886.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0007 a0001c0001t0001g0007	1	440	0.0023	32	c.28 others(43): Show c.2830_*2831insATTAATTTAATTAAATAATAAATAAATTAATT	OR2L13	ENSG00000196071.6	transcript	ENST00000358120.4	protein_coding		1982		chr1	TogoVar
OR2M3_chr1_248192265_248217925	248213466	T T	TACGTATA others(25): Show TACGTATATATATATATGTATATATATATATAC	downstream_gene_variant downstream_gene_variant	MODIFIER	NA18960.hp1 NA18960.hp1	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0003 a0001c0003t0003	a0001c0003t0003g0003 a0001c0003t0003g0003	1	410	0.0024	32	c.94 others(43): Show c.9460_*9461insACGTATATATATATATGTATATATATATATAC	OR2M3	ENSG00000228198.3	transcript	ENST00000641626.1	protein_coding		542		chr1	TogoVar
OR2T1_chr1_248398048_248413020	248404546	T T	TTATATAT others(25): Show TTATATATATATATATATATATATATATATATA	intron_variant intron_variant	MODIFIER	HG01934.hp1 HG01952.hp2 HG01934.hp1 HG01952.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0006 a0001c0001t0006	a0001c0001t0006g0155 a0001c0001t0006g0157 a0001c0001t0006g0155 a0001c0001t0006g0157	2	266	0.0075	32	c.-34 others(49): Show c.-34+1315_-34+1316insTATATATATATATATATATATATATATA TATA	OR2T1	ENSG00000175143.5	transcript	ENST00000642005.1	protein_coding	1/1		INFO_REALIGN_3_PRIME	chr1	TogoVar
OR2T34_chr1_248568801_248579757	248569909	T T	TAAAAAAA others(25): Show TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	downstream_gene_variant downstream_gene_variant	MODIFIER	NA18971.hp1 NA18984.hp2 NA19011.hp2 others(2): Show NA18971.hp1 NA18984.hp2 NA19011.hp2 NA19080.hp2 NA19090.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0000 a0001c0001t0000	a0001c0001t0000g0000 a0001c0001t0000g0000	5	314	0.0159	32	c.38 others(43): Show c.3891_*3892insTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	OR2T34	ENSG00000183310.3	transcript	ENST00000328782.3	protein_coding		3891		chr1	TogoVar
OR2V2_chr5_181142586_181164285	181156039	G G	GTTCTTTC others(25): Show GTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCT	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG00423.hp2 HG00639.hp2 HG00673.hp1 others(20): Show HG00423.hp2 HG00639.hp2 HG00673.hp1 HG00673.hp2 HG02074.hp1 HG02155.hp2 HG02572.hp2 HG03834.hp1 HG03942.hp1 HG04184.hp1 NA18940.hp1 NA18943.hp1 NA18945.hp1 NA18949.hp1 NA18959.hp1 NA18968.hp2 NA18987.hp1 NA18991.hp2 NA18992.hp2 NA19005.hp2 NA19009.hp1 NA19057.hp1 NA19072.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0002c0002 a0001c0001 a0002c0002	a0001c0001t0019 a0001c0001t0089 a0002c0002t0006 others(3): Show a0001c0001t0019 a0001c0001t0089 a0002c0002t0006 a0002c0002t0040 a0002c0002t0053 a0002c0002t0099	a0001c0001t0019g0001 a0001c0001t0019g0023 a0001c0001t0089g0001 others(7): Show a0001c0001t0019g0001 a0001c0001t0019g0023 a0001c0001t0089g0001 a0002c0002t0006g0003 a0002c0002t0006g0017 a0002c0002t0006g0018 a0002c0002t0006g0043 a0002c0002t0040g0032 a0002c0002t0053g0038 a0002c0002t0099g0020	23	424	0.0543	32	c.15 others(41): Show c.152_*183dupCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTT	OR2V2	ENSG00000182613.3	transcript	ENST00000641492.1	protein_coding	2/2	184	INFO_REALIGN_3_PRIME	chr5	TogoVar
OR2Z1_chr19_8716634_8737160	8720342	C C	CATCCATC others(25): Show CATCCATCCATCCATCCATCCATCCATTCATTT	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02723.hp2 NA18946.hp2 NA18992.hp2 HG02723.hp2 NA18946.hp2 NA18992.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0004 a0001c0002t0001g0110 a0001c0002t0001g0117 a0001c0002t0001g0004 a0001c0002t0001g0110 a0001c0002t0001g0117	3	438	0.0069	32	c.-19 others(43): Show c.-1915_-1914insATCCATCCATCCATCCATCCATCCATTCATTT	OR2Z1	ENSG00000181733.4	transcript	ENST00000641125.1	protein_coding		1291		chr19	TogoVar
OR2Z1_chr19_8716634_8737160	8720346	C C	CATCCATC others(25): Show CATCCATCCATCCATCCATCCATCCATTCATTT	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00140.hp1 HG01516.hp2 HG02257.hp2 others(6): Show HG00140.hp1 HG01516.hp2 HG02257.hp2 HG02559.hp2 HG03942.hp1 NA18953.hp2 NA19030.hp1 NA19089.hp2 NA20300.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0001 a0001c0002t0001 a0001c0001t0001 a0001c0002t0001	a0001c0001t0001g0005 a0001c0001t0001g0014 a0001c0001t0001g0035 others(2): Show a0001c0001t0001g0005 a0001c0001t0001g0014 a0001c0001t0001g0035 a0001c0001t0001g0036 a0001c0002t0001g0135	9	438	0.0206	32	c.-19 others(43): Show c.-1911_-1910insATCCATCCATCCATCCATCCATCCATTCATTT	OR2Z1	ENSG00000181733.4	transcript	ENST00000641125.1	protein_coding		1287		chr19	TogoVar
OR2Z1_chr19_8716634_8737160	8720346	C C	CATCCATC others(25): Show CATCCATCCGTCCATCCATCCATCCATTCATTT	upstream_gene_variant upstream_gene_variant	MODIFIER	HG03195.hp2 HG03195.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0059 a0001c0001t0001g0059	1	438	0.0023	32	c.-19 others(43): Show c.-1911_-1910insATCCATCCGTCCATCCATCCATCCATTCATTT	OR2Z1	ENSG00000181733.4	transcript	ENST00000641125.1	protein_coding		1287		chr19	TogoVar
OR2Z1_chr19_8716634_8737160	8720350	C C	CATCCATC others(25): Show CATCCATCCATCCATCCATCCATCCATTCATTT	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00558.hp1 HG02074.hp2 NA18977.hp2 HG00558.hp1 HG02074.hp2 NA18977.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0004	a0001c0001t0004g0039 a0001c0001t0004g0056 a0001c0001t0004g0129 a0001c0001t0004g0039 a0001c0001t0004g0056 a0001c0001t0004g0129	3	438	0.0069	32	c.-19 others(43): Show c.-1907_-1906insATCCATCCATCCATCCATCCATCCATTCATTT	OR2Z1	ENSG00000181733.4	transcript	ENST00000641125.1	protein_coding		1283		chr19	TogoVar
OR2Z1_chr19_8716634_8737160	8720354	C C	CATCCATC others(25): Show CATCCATCCATCCATCCATCCATCCATTCATTT	upstream_gene_variant upstream_gene_variant	MODIFIER	NA18982.hp1 NA18982.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0004	a0001c0001t0004g0130 a0001c0001t0004g0130	1	438	0.0023	32	c.-19 others(43): Show c.-1903_-1902insATCCATCCATCCATCCATCCATCCATTCATTT	OR2Z1	ENSG00000181733.4	transcript	ENST00000641125.1	protein_coding		1279		chr19	TogoVar
OR4D10_chr11_59468315_59484361	59468671	G G	GATAGATA others(25): Show GATAGATAGATGATAGATAGATAGATGATAGAT	upstream_gene_variant upstream_gene_variant	MODIFIER	NA19088.hp1 NA19088.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0004 a0001c0001t0003g0004	1	430	0.0023	32	c.-51 others(43): Show c.-5194_-5193insATAGATAGATGATAGATAGATAGATGATAGAT	OR4D10	ENSG00000254466.2	transcript	ENST00000530162.2	protein_coding		4643		chr11	TogoVar
OR4D10_chr11_59468315_59484361	59483771	T T	TTATATAT others(25): Show TTATATATATATATATATATATATATATATATA	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00735.hp2 HG01928.hp2 HG02145.hp2 others(6): Show HG00735.hp2 HG01928.hp2 HG02145.hp2 HG02615.hp1 HG03453.hp2 NA18954.hp1 NA18959.hp1 NA18974.hp1 NA18998.hp2	a0001 a0002 a0003 a0001 a0002 a0003	a0001c0001 a0001c0005 a0002c0002 others(1): Show a0001c0001 a0001c0005 a0002c0002 a0003c0003	a0001c0001t0001 a0001c0005t0015 a0002c0002t0002 others(1): Show a0001c0001t0001 a0001c0005t0015 a0002c0002t0002 a0003c0003t0011	a0001c0001t0001g0001 a0001c0001t0001g0003 a0001c0001t0001g0005 others(4): Show a0001c0001t0001g0001 a0001c0001t0001g0003 a0001c0001t0001g0005 a0001c0001t0001g0025 a0001c0005t0015g0029 a0002c0002t0002g0002 a0003c0003t0011g0028	9	430	0.0209	32	c.54 others(43): Show c.5406_*5407insTATATATATATATATATATATATATATATATA	OR4D10	ENSG00000254466.2	transcript	ENST00000530162.2	protein_coding		4411		chr11	TogoVar
OR4F17_chr19_102104_118156	107793	T T	TATATATA others(25): Show TATATATATATAATATATATTATATAATATATA	intron_variant intron_variant	MODIFIER	HG02895.hp1 HG03209.hp1 HG02895.hp1 HG03209.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0077 a0001c0001t0001g0078 a0001c0001t0001g0077 a0001c0001t0001g0078	2	227	0.0088	32	c.-55 others(47): Show c.-55+244_-55+275dupTATATAATATATATTATATAATATATAATA TA	OR4F17	ENSG00000176695.8	transcript	ENST00000585993.3	protein_coding	2/2		INFO_REALIGN_3_PRIME	chr19	TogoVar
OR4F5_chr1_60419_76585	72140	T T	TATACATA others(25): Show TATACATACATACATACATACATACATACATAC	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01891.hp2 HG01891.hp2	a0003 a0003	a0003c0004 a0003c0004	a0003c0004t0003 a0003c0004t0003	a0003c0004t0003g0018 a0003c0004t0003g0018	1	215	0.0047	32	c.21 others(43): Show c.2132_*2133insATACATACATACATACATACATACATACATAC	OR4F5	ENSG00000186092.7	transcript	ENST00000641515.2	protein_coding		556		chr1	TogoVar
OR4K2_chr14_19870142_19888932	19872379	T T	TTATATAT others(25): Show TTATATATATATACACATATATATACCTATTTA	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02630.hp1 HG03195.hp1 HG02630.hp1 HG03195.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0002c0002 a0001c0001 a0002c0002	a0001c0001t0140 a0002c0002t0141 a0001c0001t0140 a0002c0002t0141	a0001c0001t0140g0001 a0002c0002t0141g0001 a0001c0001t0140g0001 a0002c0002t0141g0001	2	254	0.0079	32	c.-37 others(43): Show c.-3779_-3778insTATATATATATACACATATATATACCTATTTA	OR4K2	ENSG00000165762.3	transcript	ENST00000641885.1	protein_coding		2762		chr14	TogoVar
OR4K2_chr14_19870142_19888932	19872713	T T	TTATATAT others(25): Show TTATATATATATATATATATATATATATATATA	upstream_gene_variant upstream_gene_variant	MODIFIER	HG03225.hp2 HG03225.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0116 a0002c0002t0116	a0002c0002t0116g0002 a0002c0002t0116g0002	1	254	0.0039	32	c.-34 others(43): Show c.-3445_-3444insTATATATATATATATATATATATATATATATA	OR4K2	ENSG00000165762.3	transcript	ENST00000641885.1	protein_coding		2428		chr14	TogoVar
OR4M2B_chr15_21632909_21643992	21634742	C C	CATATATA others(25): Show CATATATATATATATATATATATATATATATAT	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02071.hp1 HG02896.hp2 HG03927.hp2 others(3): Show HG02071.hp1 HG02896.hp2 HG03927.hp2 NA18612.hp1 NA18993.hp2 NA19012.hp2	a0005 a0006 a0008 others(1): Show a0005 a0006 a0008 a0009	a0005c0006 a0006c0007 a0008c0009 others(1): Show a0005c0006 a0006c0007 a0008c0009 a0009c0012	a0005c0006t0001 a0006c0007t0001 a0008c0009t0001 others(1): Show a0005c0006t0001 a0006c0007t0001 a0008c0009t0001 a0009c0012t0001	a0005c0006t0001g0000 a0006c0007t0001g0000 a0008c0009t0001g0000 others(1): Show a0005c0006t0001g0000 a0006c0007t0001g0000 a0008c0009t0001g0000 a0009c0012t0001g0000	6	215	0.0279	32	c.-32 others(43): Show c.-3265_-3264insATATATATATATATATATATATATATATATAT	OR4M2B	ENSG00000182974.3	transcript	ENST00000332663.3	protein_coding		3166		chr15	TogoVar
OR4M2B_chr15_21632909_21643992	21642103	G G	GTATATAT others(25): Show GTATATATATATACACACATATATATGTATATA	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02717.hp2 HG03540.hp2 HG02717.hp2 HG03540.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0000 a0001c0002t0001g0000	2	215	0.0093	32	c.31 others(43): Show c.3155_*3156insTATATATATATACACACATATATATGTATATA	OR4M2B	ENSG00000182974.3	transcript	ENST00000332663.3	protein_coding		3112		chr15	TogoVar
OR4M2B_chr15_21632909_21643992	21642195	A A	ATATGTAT others(25): Show ATATGTATATATATATACACACATATATATATG	downstream_gene_variant downstream_gene_variant	MODIFIER	NA18984.hp1 NA18984.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0000 a0001c0002t0001g0000	1	215	0.0047	32	c.32 others(43): Show c.3247_*3248insTATGTATATATATATACACACATATATATATG	OR4M2B	ENSG00000182974.3	transcript	ENST00000332663.3	protein_coding		3204		chr15	TogoVar
OR4M2B_chr15_21632909_21643992	21642203	G G	GTATATAT others(25): Show GTATATATATATATACACACATATATATATATA	downstream_gene_variant downstream_gene_variant	MODIFIER	NA18986.hp1 NA18989.hp2 NA18986.hp1 NA18989.hp2	a0001 a0001	a0001c0005 a0001c0005	a0001c0005t0001 a0001c0005t0001	a0001c0005t0001g0000 a0001c0005t0001g0000	2	215	0.0093	32	c.32 others(43): Show c.3255_*3256insTATATATATATATACACACATATATATATATA	OR4M2B	ENSG00000182974.3	transcript	ENST00000332663.3	protein_coding		3212		chr15	TogoVar
OR51L1_chr11_4989851_5010536	4996721	T T	TTTTCTTT others(25): Show TTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTC	intron_variant intron_variant	MODIFIER	HG01516.hp2 HG01516.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0110 a0001c0001t0002g0110	1	470	0.0021	32	c.-26 others(49): Show c.-261-744_-261-713dupTTTCTTTCTTTCTTTCTTTCTTTCTTTC TTTC	OR51L1	ENSG00000176798.3	transcript	ENST00000641819.1	protein_coding	1/2		INFO_REALIGN_3_PRIME	chr11	TogoVar
OR52A1_chr11_5141824_5159757	5153371	C C	CTGACATA others(25): Show CTGACATAAGAAATTAGTAAAAATAAAAAAGCT	intron_variant intron_variant	MODIFIER	NA19087.hp2 NA19087.hp2	a0000 a0000	a0000c0007 a0000c0007	a0000c0007t0002 a0000c0007t0002	a0000c0007t0002g0083 a0000c0007t0002g0083	1	438	0.0023	32	c.-32 others(49): Show c.-321-713_-321-682dupAGCTTTTTTATTTTTACTAATTTCTTAT GTCA	OR52A1	ENSG00000182070.7	transcript	ENST00000380367.3	protein_coding	1/1			chr11	TogoVar
OR52E2_chr11_5053650_5064627	5063049	A A	ATGTATAT others(25): Show ATGTATATATACTAGTTTATATATACACACTAG	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01243.hp2 HG02055.hp2 HG02970.hp2 others(2): Show HG01243.hp2 HG02055.hp2 HG02970.hp2 HG03225.hp1 NA18906.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0000 a0001c0001t0000	a0001c0001t0000g0000 a0001c0001t0000g0000	5	450	0.0111	32	c.-34 others(43): Show c.-3423_-3422insCTAGTGTGTATATATAAACTAGTATATATACA	OR52E2	ENSG00000176787.2	transcript	ENST00000321522.2	protein_coding		3423		chr11	TogoVar
OR52H1_chr11_5539561_5553540	5549195	T T	TCTCCCCC others(25): Show TCTCCCCCCCCTCCCCCTCCCCCCCCCCCCCCC	upstream_gene_variant upstream_gene_variant	MODIFIER	NA19010.hp1 NA19010.hp1	a0015 a0015	a0015c0018 a0015c0018	a0015c0018t0001 a0015c0018t0001	a0015c0018t0001g0061 a0015c0018t0001g0061	1	428	0.0023	32	c.-77 others(41): Show c.-775_-774insGGGGGGGGGGGGGGGAGGGGGAGGGGGGGGAG	OR52H1	ENSG00000181616.10	transcript	ENST00000322653.7	protein_coding		656		chr11	TogoVar
OR52N1_chr11_5781471_5796265	5794426	C C	CTCTCTCT others(25): Show CTCTCTCTCTCTCTCTCTCTCTCTATATATATA	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00639.hp2 HG00639.hp2	a0003 a0003	a0003c0006 a0003c0006	a0003c0006t0001 a0003c0006t0001	a0003c0006t0001g0008 a0003c0006t0001g0008	1	418	0.0024	32	c.-33 others(43): Show c.-3361_-3360insTATATATATAGAGAGAGAGAGAGAGAGAGAGA	OR52N1	ENSG00000181001.3	transcript	ENST00000641645.1	protein_coding		3162		chr11	TogoVar
OR5AS1_chr11_56022654_56043191	56039648	T T	TATATATA others(25): Show TATATATATATATATATATACACACACACATAC	downstream_gene_variant downstream_gene_variant	MODIFIER	HG03491.hp1 HG03491.hp1	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0004 a0002c0002t0004	a0002c0002t0004g0020 a0002c0002t0004g0020	1	432	0.0023	32	c.82 others(43): Show c.8255_*8256insATATATATATATATATATACACACACACATAC	OR5AS1	ENSG00000181785.3	transcript	ENST00000641320.1	protein_coding		1458		chr11	TogoVar
OR5AS1_chr11_56022654_56043191	56039648	T T	TATATATA others(25): Show TATATATATATATATATATATACACACACATAC	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00558.hp2 HG01346.hp2 NA18941.hp2 others(5): Show HG00558.hp2 HG01346.hp2 NA18941.hp2 NA18953.hp2 NA18961.hp1 NA18970.hp1 NA18991.hp2 NA19070.hp1	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0004 a0002c0002t0068 a0002c0002t0004 a0002c0002t0068	a0002c0002t0004g0003 a0002c0002t0068g0003 a0002c0002t0004g0003 a0002c0002t0068g0003	8	432	0.0185	32	c.82 others(43): Show c.8255_*8256insATATATATATATATATATATACACACACATAC	OR5AS1	ENSG00000181785.3	transcript	ENST00000641320.1	protein_coding		1458		chr11	TogoVar
OR5AS1_chr11_56022654_56043191	56039648	T T	TATATATA others(25): Show TATATATATATATATATATATATATATATATAC	downstream_gene_variant downstream_gene_variant	MODIFIER	NA19083.hp1 NA19083.hp1	a0006 a0006	a0006c0007 a0006c0007	a0006c0007t0044 a0006c0007t0044	a0006c0007t0044g0037 a0006c0007t0044g0037	1	432	0.0023	32	c.82 others(43): Show c.8255_*8256insATATATATATATATATATATATATATATATAC	OR5AS1	ENSG00000181785.3	transcript	ENST00000641320.1	protein_coding		1458		chr11	TogoVar
OR5B3_chr11_58397464_58411874	58410280	T T	TTTCCTTC others(25): Show TTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCC	upstream_gene_variant upstream_gene_variant	MODIFIER	HG03453.hp1 HG03453.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0026 a0001c0001t0002g0026	1	386	0.0026	32	c.-35 others(43): Show c.-3507_-3506insGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAA	OR5B3	ENSG00000172769.4	transcript	ENST00000641865.1	protein_coding		3407		chr11	TogoVar
OR5D18_chr11_55814630_55825571	55823246	T T	TATATATA others(25): Show TATATATATATATATAGAGAGAGAGAGAGAGAG	downstream_gene_variant downstream_gene_variant	MODIFIER	NA18967.hp1 NA18967.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0000 a0001c0001t0000	a0001c0001t0000g0000 a0001c0001t0000g0000	1	434	0.0023	32	c.26 others(43): Show c.2675_*2676insATATATATATATATAGAGAGAGAGAGAGAGAG	OR5D18	ENSG00000186119.9	transcript	ENST00000333976.7	protein_coding		2676		chr11	TogoVar
OR5L2_chr11_55822219_55833154	55823246	T T	TATATATA others(25): Show TATATATATATATATAGAGAGAGAGAGAGAGAG	upstream_gene_variant upstream_gene_variant	MODIFIER	NA18967.hp1 NA18967.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0000 a0001c0001t0000	a0001c0001t0000g0000 a0001c0001t0000g0000	1	448	0.0022	32	c.-39 others(43): Show c.-3973_-3972insATATATATATATATAGAGAGAGAGAGAGAGAG	OR5L2	ENSG00000205030.1	transcript	ENST00000378397.1	protein_coding		3972		chr11	TogoVar

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