Joint Open Genome and Omics Platform (JoGo)

Search by Variant

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Chr

Chromosome name (e.g., chr11).

Snpeff genename

Exact SnpEff gene name.

Sampleids

Target sampleid (e.g. HG02615).

Snpeff haplotype class

Haplotype-annotation class (e.g., ahapid, ahapid+chapid).

Snpeff annotation impact

Exact impact level (e.g., HIGH, MODERATE, LOW).

Snpeff annotation impact detail

Keyword match in SnpEff annotation.

Hapid

One or more haplotype IDs (comma-separated; e.g., a0001, a01, a0001c0001, a01c02, a1c2, a0001c0001t0005, a0001c0001t0005g0018).

Samplehapid

Sample haplotype IDs to include (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

No_hapid

Haplotype IDs to exclude (comma-separated; e.g., a0001, a0002, a0001c0001, a0001c0001t0005, a1, a01).

No_samplehapid

Sample haplotype IDs to exclude (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

Start

Start position (GRCh38).

End

End position (GRCh38).

Minac

Minimum alternate allele count (≥).

Maxac

Maximum alternate allele count (≤).

Minlen

Minimum variant length (≥).

Maxlen

Maximum variant length (≤).

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⚠️ Results limited to 10,000 hits. Refine your search for more specific results.

regionname	pos	ref	alt	annotation	impact	samples	ahapids	achapids	acthapids	actghapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	external
PCDHA1_chr5_140781140_141017347	140946611	A A	AATATATA others(25): Show AATATATATATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG00642.hp1 HG00642.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0061 a0001c0001t0001g0061	1	200	0.0050	32	c.239 others(53): Show c.2395-32317_2395-32316insTATATATATATATATATATATATA TATATATA	PCDHA1	ENSG00000204970.10	transcript	ENST00000504120.4	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA1_chr5_140781140_141017347	140946631	T T	TATATATA others(25): Show TATATATATATATATATATATATATATATACAC	intron_variant intron_variant	MODIFIER	HG03540.hp1 HG03540.hp1	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0001 a0002c0002t0001	a0002c0002t0001g0122 a0002c0002t0001g0122	1	200	0.0050	32	c.239 others(53): Show c.2395-32317_2395-32316insTATATATATATATATATATATATA TATACACA	PCDHA1	ENSG00000204970.10	transcript	ENST00000504120.4	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA1_chr5_140781140_141017347	140946631	T T	TATATATA others(25): Show TATATATATATATATATATATATATATATATAC	intron_variant intron_variant	MODIFIER	HG03579.hp2 NA19030.hp1 HG03579.hp2 NA19030.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0002c0002 a0001c0001 a0002c0002	a0001c0001t0001 a0002c0002t0002 a0001c0001t0001 a0002c0002t0002	a0001c0001t0001g0006 a0002c0002t0002g0128 a0001c0001t0001g0006 a0002c0002t0002g0128	2	200	0.0100	32	c.239 others(53): Show c.2395-32317_2395-32316insTATATATATATATATATATATATA TATATACA	PCDHA1	ENSG00000204970.10	transcript	ENST00000504120.4	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA2_chr5_140789852_141017347	140925082	A A	AAAGGAAG others(25): Show AAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGG	intron_variant intron_variant	MODIFIER	HG00280.hp1 HG00280.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0197 a0001c0001t0001g0197	1	202	0.0050	32	c.238 others(53): Show c.2389-53842_2389-53841insAGGAAGGAAGGAAGGAAGGAAGGA AGGAAGGA	PCDHA2	ENSG00000204969.7	transcript	ENST00000526136.2	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA2_chr5_140789852_141017347	140946611	A A	AATATATA others(25): Show AATATATATATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG00642.hp1 HG00642.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0062 a0001c0001t0001g0062	1	202	0.0050	32	c.238 others(53): Show c.2389-32317_2389-32316insTATATATATATATATATATATATA TATATATA	PCDHA2	ENSG00000204969.7	transcript	ENST00000526136.2	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA2_chr5_140789852_141017347	140946631	T T	TATATATA others(25): Show TATATATATATATATATATATATATATATACAC	intron_variant intron_variant	MODIFIER	HG03540.hp1 HG03540.hp1	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0001 a0002c0002t0001	a0002c0002t0001g0132 a0002c0002t0001g0132	1	202	0.0050	32	c.238 others(53): Show c.2389-32317_2389-32316insTATATATATATATATATATATATA TATACACA	PCDHA2	ENSG00000204969.7	transcript	ENST00000526136.2	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA2_chr5_140789852_141017347	140946631	T T	TATATATA others(25): Show TATATATATATATATATATATATATATATATAC	intron_variant intron_variant	MODIFIER	HG03579.hp1 NA19030.hp1 HG03579.hp1 NA19030.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0002c0002 a0001c0001 a0002c0002	a0001c0001t0001 a0002c0002t0002 a0001c0001t0001 a0002c0002t0002	a0001c0001t0001g0089 a0002c0002t0002g0140 a0001c0001t0001g0089 a0002c0002t0002g0140	2	202	0.0099	32	c.238 others(53): Show c.2389-32317_2389-32316insTATATATATATATATATATATATA TATATACA	PCDHA2	ENSG00000204969.7	transcript	ENST00000526136.2	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA3_chr5_140796057_141017347	140925082	A A	AAAGGAAG others(25): Show AAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGG	intron_variant intron_variant	MODIFIER	HG00280.hp1 HG00280.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0096 a0001c0001t0001g0096	1	208	0.0048	32	c.239 others(53): Show c.2395-53842_2395-53841insAGGAAGGAAGGAAGGAAGGAAGGA AGGAAGGA	PCDHA3	ENSG00000255408.4	transcript	ENST00000522353.3	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA3_chr5_140796057_141017347	140946611	A A	AATATATA others(25): Show AATATATATATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG00642.hp1 HG00642.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0047 a0001c0001t0001g0047	1	208	0.0048	32	c.239 others(53): Show c.2395-32317_2395-32316insTATATATATATATATATATATATA TATATATA	PCDHA3	ENSG00000255408.4	transcript	ENST00000522353.3	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA3_chr5_140796057_141017347	140946631	T T	TATATATA others(25): Show TATATATATATATATATATATATATATATACAC	intron_variant intron_variant	MODIFIER	HG03540.hp1 HG03540.hp1	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0002 a0002c0002t0002	a0002c0002t0002g0113 a0002c0002t0002g0113	1	208	0.0048	32	c.239 others(53): Show c.2395-32317_2395-32316insTATATATATATATATATATATATA TATACACA	PCDHA3	ENSG00000255408.4	transcript	ENST00000522353.3	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA3_chr5_140796057_141017347	140946631	T T	TATATATA others(25): Show TATATATATATATATATATATATATATATATAC	intron_variant intron_variant	MODIFIER	HG03579.hp2 NA19030.hp1 HG03579.hp2 NA19030.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0002c0002 a0001c0001 a0002c0002	a0001c0001t0001 a0002c0002t0004 a0001c0001t0001 a0002c0002t0004	a0001c0001t0001g0004 a0002c0002t0004g0129 a0001c0001t0001g0004 a0002c0002t0004g0129	2	208	0.0096	32	c.239 others(53): Show c.2395-32317_2395-32316insTATATATATATATATATATATATA TATATACA	PCDHA3	ENSG00000255408.4	transcript	ENST00000522353.3	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA4_chr5_140802068_141017347	140925082	A A	AAAGGAAG others(25): Show AAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGG	intron_variant intron_variant	MODIFIER	HG00280.hp1 HG00280.hp1	a0003 a0003	a0003c0012 a0003c0012	a0003c0012t0001 a0003c0012t0001	a0003c0012t0001g0005 a0003c0012t0001g0005	1	212	0.0047	32	c.238 others(53): Show c.2386-53842_2386-53841insAGGAAGGAAGGAAGGAAGGAAGGA AGGAAGGA	PCDHA4	ENSG00000204967.13	transcript	ENST00000530339.2	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA4_chr5_140802068_141017347	140946611	A A	AATATATA others(25): Show AATATATATATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG00642.hp2 HG00642.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0001 a0002c0002t0001	a0002c0002t0001g0042 a0002c0002t0001g0042	1	212	0.0047	32	c.238 others(53): Show c.2386-32317_2386-32316insTATATATATATATATATATATATA TATATATA	PCDHA4	ENSG00000204967.13	transcript	ENST00000530339.2	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA4_chr5_140802068_141017347	140946631	T T	TATATATA others(25): Show TATATATATATATATATATATATATATATACAC	intron_variant intron_variant	MODIFIER	HG03540.hp1 HG03540.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0116 a0001c0001t0002g0116	1	212	0.0047	32	c.238 others(53): Show c.2386-32317_2386-32316insTATATATATATATATATATATATA TATACACA	PCDHA4	ENSG00000204967.13	transcript	ENST00000530339.2	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA4_chr5_140802068_141017347	140946631	T T	TATATATA others(25): Show TATATATATATATATATATATATATATATATAC	intron_variant intron_variant	MODIFIER	HG03579.hp2 NA19030.hp1 HG03579.hp2 NA19030.hp1	a0001 a0003 a0001 a0003	a0001c0001 a0003c0003 a0001c0001 a0003c0003	a0001c0001t0004 a0003c0003t0001 a0001c0001t0004 a0003c0003t0001	a0001c0001t0004g0132 a0003c0003t0001g0003 a0001c0001t0004g0132 a0003c0003t0001g0003	2	212	0.0094	32	c.238 others(53): Show c.2386-32317_2386-32316insTATATATATATATATATATATATA TATATACA	PCDHA4	ENSG00000204967.13	transcript	ENST00000530339.2	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA5_chr5_140816613_141017347	140925082	A A	AAAGGAAG others(25): Show AAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGG	intron_variant intron_variant	MODIFIER	HG00280.hp2 HG00280.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0210 a0001c0001t0003g0210	1	220	0.0046	32	c.235 others(53): Show c.2353-53842_2353-53841insAGGAAGGAAGGAAGGAAGGAAGGA AGGAAGGA	PCDHA5	ENSG00000204965.9	transcript	ENST00000529859.2	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA5_chr5_140816613_141017347	140946611	A A	AATATATA others(25): Show AATATATATATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG00642.hp1 HG00642.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0128 a0001c0001t0001g0128	1	220	0.0046	32	c.235 others(53): Show c.2353-32317_2353-32316insTATATATATATATATATATATATA TATATATA	PCDHA5	ENSG00000204965.9	transcript	ENST00000529859.2	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA5_chr5_140816613_141017347	140946631	T T	TATATATA others(25): Show TATATATATATATATATATATATATATATACAC	intron_variant intron_variant	MODIFIER	HG03540.hp2 HG03540.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0002 a0002c0002t0002	a0002c0002t0002g0072 a0002c0002t0002g0072	1	220	0.0046	32	c.235 others(53): Show c.2353-32317_2353-32316insTATATATATATATATATATATATA TATACACA	PCDHA5	ENSG00000204965.9	transcript	ENST00000529859.2	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA5_chr5_140816613_141017347	140946631	T T	TATATATA others(25): Show TATATATATATATATATATATATATATATATAC	intron_variant intron_variant	MODIFIER	HG03579.hp2 NA19030.hp2 HG03579.hp2 NA19030.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0002c0002 a0001c0001 a0002c0002	a0001c0001t0001 a0002c0002t0004 a0001c0001t0001 a0002c0002t0004	a0001c0001t0001g0204 a0002c0002t0004g0011 a0001c0001t0001g0204 a0002c0002t0004g0011	2	220	0.0091	32	c.235 others(53): Show c.2353-32317_2353-32316insTATATATATATATATATATATATA TATATACA	PCDHA5	ENSG00000204965.9	transcript	ENST00000529859.2	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA6_chr5_140822960_141017347	140925082	A A	AAAGGAAG others(25): Show AAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGG	intron_variant intron_variant	MODIFIER	HG00280.hp1 HG00280.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0125 a0001c0001t0001g0125	1	236	0.0042	32	c.239 others(53): Show c.2395-53842_2395-53841insAGGAAGGAAGGAAGGAAGGAAGGA AGGAAGGA	PCDHA6	ENSG00000081842.18	transcript	ENST00000529310.6	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA6_chr5_140822960_141017347	140946611	A A	AATATATA others(25): Show AATATATATATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG00642.hp2 HG00642.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0026 a0001c0001t0001g0026	1	236	0.0042	32	c.239 others(53): Show c.2395-32317_2395-32316insTATATATATATATATATATATATA TATATATA	PCDHA6	ENSG00000081842.18	transcript	ENST00000529310.6	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA6_chr5_140822960_141017347	140946631	T T	TATATATA others(25): Show TATATATATATATATATATATATATATATACAC	intron_variant intron_variant	MODIFIER	HG03540.hp1 HG03540.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0202 a0001c0002t0001g0202	1	236	0.0042	32	c.239 others(53): Show c.2395-32317_2395-32316insTATATATATATATATATATATATA TATACACA	PCDHA6	ENSG00000081842.18	transcript	ENST00000529310.6	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA6_chr5_140822960_141017347	140946631	T T	TATATATA others(25): Show TATATATATATATATATATATATATATATATAC	intron_variant intron_variant	MODIFIER	HG03579.hp2 NA19030.hp2 HG03579.hp2 NA19030.hp2	a0001 a0002 a0001 a0002	a0001c0002 a0002c0003 a0001c0002 a0002c0003	a0001c0002t0002 a0002c0003t0001 a0001c0002t0002 a0002c0003t0001	a0001c0002t0002g0149 a0002c0003t0001g0012 a0001c0002t0002g0149 a0002c0003t0001g0012	2	236	0.0085	32	c.239 others(53): Show c.2395-32317_2395-32316insTATATATATATATATATATATATA TATATACA	PCDHA6	ENSG00000081842.18	transcript	ENST00000529310.6	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA7_chr5_140829269_141017347	140925082	A A	AAAGGAAG others(25): Show AAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGG	intron_variant intron_variant	MODIFIER	HG00280.hp2 HG00280.hp2	a0019 a0019	a0019c0025 a0019c0025	a0019c0025t0001 a0019c0025t0001	a0019c0025t0001g0124 a0019c0025t0001g0124	1	248	0.0040	32	c.235 others(53): Show c.2356-53842_2356-53841insAGGAAGGAAGGAAGGAAGGAAGGA AGGAAGGA	PCDHA7	ENSG00000204963.6	transcript	ENST00000525929.2	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA7_chr5_140829269_141017347	140946611	A A	AATATATA others(25): Show AATATATATATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG00642.hp1 HG00642.hp1	a0002 a0002	a0002c0001 a0002c0001	a0002c0001t0001 a0002c0001t0001	a0002c0001t0001g0078 a0002c0001t0001g0078	1	248	0.0040	32	c.235 others(53): Show c.2356-32317_2356-32316insTATATATATATATATATATATATA TATATATA	PCDHA7	ENSG00000204963.6	transcript	ENST00000525929.2	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA7_chr5_140829269_141017347	140946631	T T	TATATATA others(25): Show TATATATATATATATATATATATATATATACAC	intron_variant intron_variant	MODIFIER	HG03540.hp1 HG03540.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0216 a0001c0002t0001g0216	1	248	0.0040	32	c.235 others(53): Show c.2356-32317_2356-32316insTATATATATATATATATATATATA TATACACA	PCDHA7	ENSG00000204963.6	transcript	ENST00000525929.2	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA7_chr5_140829269_141017347	140946631	T T	TATATATA others(25): Show TATATATATATATATATATATATATATATATAC	intron_variant intron_variant	MODIFIER	HG03579.hp1 NA19030.hp2 HG03579.hp1 NA19030.hp2	a0001 a0002 a0001 a0002	a0001c0002 a0002c0020 a0001c0002 a0002c0020	a0001c0002t0002 a0002c0020t0001 a0001c0002t0002 a0002c0020t0001	a0001c0002t0002g0173 a0002c0020t0001g0119 a0001c0002t0002g0173 a0002c0020t0001g0119	2	248	0.0081	32	c.235 others(53): Show c.2356-32317_2356-32316insTATATATATATATATATATATATA TATATACA	PCDHA7	ENSG00000204963.6	transcript	ENST00000525929.2	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA8_chr5_140836187_141017347	140925082	A A	AAAGGAAG others(25): Show AAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGG	intron_variant intron_variant	MODIFIER	HG00280.hp1 HG00280.hp1	a0003 a0003	a0003c0003 a0003c0003	a0003c0003t0001 a0003c0003t0001	a0003c0003t0001g0129 a0003c0003t0001g0129	1	258	0.0039	32	c.239 others(53): Show c.2395-53842_2395-53841insAGGAAGGAAGGAAGGAAGGAAGGA AGGAAGGA	PCDHA8	ENSG00000204962.6	transcript	ENST00000531613.2	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA8_chr5_140836187_141017347	140946611	A A	AATATATA others(25): Show AATATATATATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG00642.hp1 HG00642.hp1	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0001 a0002c0002t0001	a0002c0002t0001g0128 a0002c0002t0001g0128	1	258	0.0039	32	c.239 others(53): Show c.2395-32317_2395-32316insTATATATATATATATATATATATA TATATATA	PCDHA8	ENSG00000204962.6	transcript	ENST00000531613.2	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA8_chr5_140836187_141017347	140946631	T T	TATATATA others(25): Show TATATATATATATATATATATATATATATACAC	intron_variant intron_variant	MODIFIER	HG03540.hp2 HG03540.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0043 a0001c0001t0001g0043	1	258	0.0039	32	c.239 others(53): Show c.2395-32317_2395-32316insTATATATATATATATATATATATA TATACACA	PCDHA8	ENSG00000204962.6	transcript	ENST00000531613.2	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA8_chr5_140836187_141017347	140946631	T T	TATATATA others(25): Show TATATATATATATATATATATATATATATATAC	intron_variant intron_variant	MODIFIER	HG03579.hp2 NA19030.hp2 HG03579.hp2 NA19030.hp2	a0001 a0003 a0001 a0003	a0001c0001 a0003c0003 a0001c0001 a0003c0003	a0001c0001t0002 a0003c0003t0001 a0001c0001t0002 a0003c0003t0001	a0001c0001t0002g0154 a0003c0003t0001g0026 a0001c0001t0002g0154 a0003c0003t0001g0026	2	258	0.0078	32	c.239 others(53): Show c.2395-32317_2395-32316insTATATATATATATATATATATATA TATATACA	PCDHA8	ENSG00000204962.6	transcript	ENST00000531613.2	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA9_chr5_140843382_141017347	140925082	A A	AAAGGAAG others(25): Show AAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGG	intron_variant intron_variant	MODIFIER	HG00280.hp1 HG00280.hp1	a0003 a0003	a0003c0037 a0003c0037	a0003c0037t0001 a0003c0037t0001	a0003c0037t0001g0218 a0003c0037t0001g0218	1	256	0.0039	32	c.239 others(53): Show c.2395-53842_2395-53841insAGGAAGGAAGGAAGGAAGGAAGGA AGGAAGGA	PCDHA9	ENSG00000204961.7	transcript	ENST00000532602.2	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA9_chr5_140843382_141017347	140946611	A A	AATATATA others(25): Show AATATATATATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG00642.hp1 HG00642.hp1	a0007 a0007	a0007c0007 a0007c0007	a0007c0007t0001 a0007c0007t0001	a0007c0007t0001g0131 a0007c0007t0001g0131	1	256	0.0039	32	c.239 others(53): Show c.2395-32317_2395-32316insTATATATATATATATATATATATA TATATATA	PCDHA9	ENSG00000204961.7	transcript	ENST00000532602.2	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA9_chr5_140843382_141017347	140946631	T T	TATATATA others(25): Show TATATATATATATATATATATATATATATACAC	intron_variant intron_variant	MODIFIER	HG03540.hp1 HG03540.hp1	a0014 a0014	a0014c0018 a0014c0018	a0014c0018t0001 a0014c0018t0001	a0014c0018t0001g0059 a0014c0018t0001g0059	1	256	0.0039	32	c.239 others(53): Show c.2395-32317_2395-32316insTATATATATATATATATATATATA TATACACA	PCDHA9	ENSG00000204961.7	transcript	ENST00000532602.2	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA9_chr5_140843382_141017347	140946631	T T	TATATATA others(25): Show TATATATATATATATATATATATATATATATAC	intron_variant intron_variant	MODIFIER	HG03579.hp1 NA19030.hp1 HG03579.hp1 NA19030.hp1	a0001 a0012 a0001 a0012	a0001c0005 a0012c0012 a0001c0005 a0012c0012	a0001c0005t0002 a0012c0012t0010 a0001c0005t0002 a0012c0012t0010	a0001c0005t0002g0212 a0012c0012t0010g0238 a0001c0005t0002g0212 a0012c0012t0010g0238	2	256	0.0078	32	c.239 others(53): Show c.2395-32317_2395-32316insTATATATATATATATATATATATA TATATACA	PCDHA9	ENSG00000204961.7	transcript	ENST00000532602.2	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHAC1_chr5_140921299_141017347	140925082	A A	AAAGGAAG others(25): Show AAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGG	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00280.hp1 HG00280.hp1	a0014 a0014	a0014c0010 a0014c0010	a0014c0010t0026 a0014c0010t0026	a0014c0010t0026g0001 a0014c0010t0026g0001	1	280	0.0036	32	c.-18 others(43): Show c.-1811_-1810insAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGG	PCDHAC1	ENSG00000248383.5	transcript	ENST00000253807.3	protein_coding		1216		chr5	TogoVar
PCDHAC1_chr5_140921299_141017347	140946611	A A	AATATATA others(25): Show AATATATATATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG00642.hp1 HG00642.hp1	a0001 a0001	a0001c0004 a0001c0004	a0001c0004t0001 a0001c0004t0001	a0001c0004t0001g0223 a0001c0004t0001g0223	1	280	0.0036	32	c.243 others(53): Show c.2433+17307_2433+17308insTATATATATATATATATATATATA TATATATA	PCDHAC1	ENSG00000248383.5	transcript	ENST00000253807.3	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHAC1_chr5_140921299_141017347	140946631	T T	TATATATA others(25): Show TATATATATATATATATATATATATATATACAC	intron_variant intron_variant	MODIFIER	HG03540.hp2 HG03540.hp2	a0001 a0001	a0001c0007 a0001c0007	a0001c0007t0001 a0001c0007t0001	a0001c0007t0001g0197 a0001c0007t0001g0197	1	280	0.0036	32	c.243 others(53): Show c.2433+17307_2433+17308insTATATATATATATATATATATATA TATACACA	PCDHAC1	ENSG00000248383.5	transcript	ENST00000253807.3	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHAC1_chr5_140921299_141017347	140946631	T T	TATATATA others(25): Show TATATATATATATATATATATATATATATATAC	intron_variant intron_variant	MODIFIER	HG03579.hp1 NA19030.hp1 HG03579.hp1 NA19030.hp1	a0001 a0001	a0001c0003 a0001c0023 a0001c0003 a0001c0023	a0001c0003t0024 a0001c0023t0001 a0001c0003t0024 a0001c0023t0001	a0001c0003t0024g0251 a0001c0023t0001g0226 a0001c0003t0024g0251 a0001c0023t0001g0226	2	280	0.0071	32	c.243 others(53): Show c.2433+17307_2433+17308insTATATATATATATATATATATATA TATATACA	PCDHAC1	ENSG00000248383.5	transcript	ENST00000253807.3	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHB13_chr5_141208919_141223979	141221429	G G	GTATATAT others(25): Show GTATATATATATATATATATATATATATATATA	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02895.hp2 HG02965.hp2 HG02895.hp2 HG02965.hp2	a0003 a0003	a0003c0003 a0003c0003	a0003c0003t0003 a0003c0003t0003	a0003c0003t0003g0000 a0003c0003t0003g0000	2	428	0.0047	32	c.49 others(43): Show c.4909_*4910insTATATATATATATATATATATATATATATATA	PCDHB13	ENSG00000187372.11	transcript	ENST00000341948.6	protein_coding		2451		chr5	TogoVar
PCDHB13_chr5_141208919_141223979	141221429	G G	GTGTATAT others(25): Show GTGTATATATATATATATATATATATATATATA	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01884.hp2 HG01884.hp2	a0000 a0000	a0000c0011 a0000c0011	a0000c0011t0007 a0000c0011t0007	a0000c0011t0007g0000 a0000c0011t0007g0000	1	428	0.0023	32	c.49 others(43): Show c.4909_*4910insTGTATATATATATATATATATATATATATATA	PCDHB13	ENSG00000187372.11	transcript	ENST00000341948.6	protein_coding		2451		chr5	TogoVar
PCDHB13_chr5_141208919_141223979	141221530	G G	GCTCTCTC others(25): Show GCTCTCTCTATATATATATGCTATATATATGCT	downstream_gene_variant downstream_gene_variant	MODIFIER	NA18522.hp1 NA18522.hp1	a0007 a0007	a0007c0008 a0007c0008	a0007c0008t0007 a0007c0008t0007	a0007c0008t0007g0000 a0007c0008t0007g0000	1	428	0.0023	32	c.50 others(43): Show c.5010_*5011insCTCTCTCTATATATATATGCTATATATATGCT	PCDHB13	ENSG00000187372.11	transcript	ENST00000341948.6	protein_coding		2552		chr5	TogoVar
PCDHB14_chr5_141218343_141232759	141221429	G G	GTATATAT others(25): Show GTATATATATATATATATATATATATATATATA	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01123.hp1 HG02895.hp1 HG02965.hp2 HG01123.hp1 HG02895.hp1 HG02965.hp2	a0001 a0001	a0001c0004 a0001c0026 a0001c0004 a0001c0026	a0001c0004t0004 a0001c0026t0004 a0001c0004t0004 a0001c0026t0004	a0001c0004t0004g0000 a0001c0026t0004g0000 a0001c0004t0004g0000 a0001c0026t0004g0000	3	448	0.0067	32	c.-20 others(43): Show c.-2077_-2076insTATATATATATATATATATATATATATATATA	PCDHB14	ENSG00000120327.7	transcript	ENST00000239449.7	protein_coding		1913		chr5	TogoVar
PCDHB14_chr5_141218343_141232759	141221429	G G	GTGTATAT others(25): Show GTGTATATATATATATATATATATATATATATA	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01884.hp1 HG01884.hp1	a0008 a0008	a0008c0012 a0008c0012	a0008c0012t0003 a0008c0012t0003	a0008c0012t0003g0000 a0008c0012t0003g0000	1	448	0.0022	32	c.-20 others(43): Show c.-2077_-2076insTGTATATATATATATATATATATATATATATA	PCDHB14	ENSG00000120327.7	transcript	ENST00000239449.7	protein_coding		1913		chr5	TogoVar
PCDHB14_chr5_141218343_141232759	141221530	G G	GCTCTCTC others(25): Show GCTCTCTCTATATATATATGCTATATATATGCT	upstream_gene_variant upstream_gene_variant	MODIFIER	NA18522.hp2 NA18522.hp2	a0021 a0021	a0021c0016 a0021c0016	a0021c0016t0003 a0021c0016t0003	a0021c0016t0003g0000 a0021c0016t0003g0000	1	448	0.0022	32	c.-19 others(43): Show c.-1976_-1975insCTCTCTCTATATATATATGCTATATATATGCT	PCDHB14	ENSG00000120327.7	transcript	ENST00000239449.7	protein_coding		1812		chr5	TogoVar
PCDHGA1_chr5_141325514_141517975	141347137	C C	CTCTTTCT others(25): Show CTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTT	intron_variant intron_variant	MODIFIER	HG00323.hp1 HG01123.hp1 HG01975.hp2 others(12): Show HG00323.hp1 HG01123.hp1 HG01975.hp2 HG01993.hp2 HG02040.hp1 HG02055.hp1 HG02145.hp2 HG02273.hp1 HG02293.hp1 HG02647.hp2 HG02970.hp1 HG03831.hp1 NA18970.hp1 NA19056.hp1 NA19065.hp1	a0001 a0002 a0006 others(1): Show a0001 a0002 a0006 a0009	a0001c0001 a0001c0002 a0001c0007 others(4): Show a0001c0001 a0001c0002 a0001c0007 a0001c0014 a0002c0003 a0006c0009 a0009c0021	a0001c0001t0001 a0001c0001t0002 a0001c0001t0004 others(7): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0004 a0001c0002t0001 a0001c0002t0009 a0001c0007t0007 a0001c0014t0001 a0002c0003t0002 a0006c0009t0001 a0009c0021t0002	a0001c0001t0001g0097 a0001c0001t0002g0064 a0001c0001t0002g0065 others(12): Show a0001c0001t0001g0097 a0001c0001t0002g0064 a0001c0001t0002g0065 a0001c0001t0004g0164 a0001c0002t0001g0226 a0001c0002t0009g0227 a0001c0002t0009g0233 a0001c0007t0007g0229 a0001c0007t0007g0230 a0001c0007t0007g0231 a0001c0007t0007g0232 a0001c0014t0001g0087 a0002c0003t0002g0069 a0006c0009t0001g0075 a0009c0021t0002g0182	15	268	0.0560	32	c.242 others(53): Show c.2421+14045_2421+14076dupTCTTTCTTTCTTTCTTTCTTTCTT TCTTTCTT	PCDHGA1	ENSG00000204956.6	transcript	ENST00000517417.3	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHGA2_chr5_141333760_141517975	141347137	C C	CTCTTTCT others(25): Show CTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTT	intron_variant intron_variant	MODIFIER	HG00323.hp1 HG01123.hp2 HG01975.hp1 others(13): Show HG00323.hp1 HG01123.hp2 HG01975.hp1 HG01993.hp2 HG02027.hp2 HG02040.hp1 HG02055.hp1 HG02145.hp1 HG02273.hp2 HG02293.hp1 HG02647.hp1 HG02970.hp2 HG03831.hp1 NA18970.hp2 NA19056.hp2 NA19065.hp2	a0001 a0002 a0003 a0001 a0002 a0003	a0001c0001 a0001c0004 a0001c0013 others(2): Show a0001c0001 a0001c0004 a0001c0013 a0002c0002 a0003c0003	a0001c0001t0001 a0001c0001t0002 a0001c0004t0002 others(5): Show a0001c0001t0001 a0001c0001t0002 a0001c0004t0002 a0001c0013t0001 a0002c0002t0005 a0003c0003t0001 a0003c0003t0004 a0003c0003t0008	a0001c0001t0001g0044 a0001c0001t0001g0102 a0001c0001t0002g0002 others(13): Show a0001c0001t0001g0044 a0001c0001t0001g0102 a0001c0001t0002g0002 a0001c0001t0002g0058 a0001c0004t0002g0031 a0001c0004t0002g0032 a0001c0013t0001g0052 a0002c0002t0005g0256 a0003c0003t0001g0154 a0003c0003t0004g0155 a0003c0003t0004g0156 a0003c0003t0004g0157 a0003c0003t0004g0158 a0003c0003t0004g0159 a0003c0003t0008g0160 a0003c0003t0008g0161	16	272	0.0588	32	c.242 others(51): Show c.2424+5755_2424+5786dupTCTTTCTTTCTTTCTTTCTTTCTTTC TTTCTT	PCDHGA2	ENSG00000081853.15	transcript	ENST00000394576.3	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHGA3_chr5_141338829_141517975	141347137	C C	CTCTTTCT others(25): Show CTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTT	intron_variant intron_variant	MODIFIER	HG00323.hp1 HG01975.hp1 HG01993.hp2 others(11): Show HG00323.hp1 HG01975.hp1 HG01993.hp2 HG02027.hp2 HG02040.hp2 HG02055.hp2 HG02145.hp1 HG02273.hp1 HG02293.hp1 HG02647.hp2 HG02970.hp1 HG03831.hp1 NA18970.hp2 NA19056.hp1	a0001 a0003 a0001 a0003	a0001c0001 a0001c0005 a0003c0003 others(1): Show a0001c0001 a0001c0005 a0003c0003 a0003c0007	a0001c0001t0001 a0001c0001t0004 a0001c0001t0005 others(5): Show a0001c0001t0001 a0001c0001t0004 a0001c0001t0005 a0001c0001t0009 a0001c0005t0001 a0003c0003t0002 a0003c0007t0001 a0003c0007t0002	a0001c0001t0001g0252 a0001c0001t0001g0258 a0001c0001t0004g0253 others(11): Show a0001c0001t0001g0252 a0001c0001t0001g0258 a0001c0001t0004g0253 a0001c0001t0004g0254 a0001c0001t0004g0255 a0001c0001t0004g0256 a0001c0001t0004g0257 a0001c0001t0005g0259 a0001c0001t0009g0260 a0001c0001t0009g0261 a0001c0005t0001g0251 a0003c0003t0002g0018 a0003c0007t0001g0020 a0003c0007t0002g0019	14	270	0.0519	32	c.242 others(49): Show c.2424+693_2424+724dupTCTTTCTTTCTTTCTTTCTTTCTTTCTT TCTT	PCDHGA3	ENSG00000254245.3	transcript	ENST00000253812.8	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHGB1_chr5_141345099_141517975	141347137	C C	CTCTGTCT others(25): Show CTCTGTCTTTCTTTCTTTCTTTCTTTCTTTCTT	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02976.hp1 HG02976.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0264 a0001c0002t0001g0264	1	278	0.0036	32	c.-31 others(43): Show c.-3124_-3123insTCTGTCTTTCTTTCTTTCTTTCTTTCTTTCTT	PCDHGB1	ENSG00000254221.3	transcript	ENST00000523390.2	protein_coding		2961		chr5	TogoVar
PCDHGB1_chr5_141345099_141517975	141347137	C C	CTCTTTCT others(25): Show CTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTT	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00323.hp2 HG01975.hp1 HG01993.hp2 others(12): Show HG00323.hp2 HG01975.hp1 HG01993.hp2 HG02027.hp2 HG02040.hp2 HG02055.hp2 HG02145.hp1 HG02273.hp2 HG02293.hp1 HG02647.hp2 HG02970.hp2 HG03831.hp2 NA18970.hp1 NA19056.hp1 NA19065.hp2	a0001 a0004 a0001 a0004	a0001c0001 a0001c0002 a0001c0003 others(2): Show a0001c0001 a0001c0002 a0001c0003 a0001c0005 a0004c0008	a0001c0001t0001 a0001c0001t0004 a0001c0002t0001 others(5): Show a0001c0001t0001 a0001c0001t0004 a0001c0002t0001 a0001c0002t0003 a0001c0003t0003 a0001c0003t0005 a0001c0005t0001 a0004c0008t0008	a0001c0001t0001g0041 a0001c0001t0001g0217 a0001c0001t0004g0133 others(12): Show a0001c0001t0001g0041 a0001c0001t0001g0217 a0001c0001t0004g0133 a0001c0001t0004g0135 a0001c0001t0004g0137 a0001c0001t0004g0140 a0001c0001t0004g0144 a0001c0002t0001g0049 a0001c0002t0003g0044 a0001c0002t0003g0265 a0001c0003t0003g0077 a0001c0003t0005g0086 a0001c0005t0001g0094 a0004c0008t0008g0117 a0004c0008t0008g0166	15	278	0.0540	32	c.-31 others(43): Show c.-3124_-3123insTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTT	PCDHGB1	ENSG00000254221.3	transcript	ENST00000523390.2	protein_coding		2961		chr5	TogoVar

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