Joint Open Genome and Omics Platform (JoGo)

Search by Variant

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Chr

Chromosome name (e.g., chr11).

Snpeff genename

Exact SnpEff gene name.

Sampleids

Target sampleid (e.g. HG02615).

Snpeff haplotype class

Haplotype-annotation class (e.g., ahapid, ahapid+chapid).

Snpeff annotation impact

Exact impact level (e.g., HIGH, MODERATE, LOW).

Snpeff annotation impact detail

Keyword match in SnpEff annotation.

Hapid

One or more haplotype IDs (comma-separated; e.g., a0001, a01, a0001c0001, a01c02, a1c2, a0001c0001t0005, a0001c0001t0005g0018).

Samplehapid

Sample haplotype IDs to include (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

No_hapid

Haplotype IDs to exclude (comma-separated; e.g., a0001, a0002, a0001c0001, a0001c0001t0005, a1, a01).

No_samplehapid

Sample haplotype IDs to exclude (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

Start

Start position (GRCh38).

End

End position (GRCh38).

Minac

Minimum alternate allele count (≥).

Maxac

Maximum alternate allele count (≤).

Minlen

Minimum variant length (≥).

Maxlen

Maximum variant length (≤).

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⚠️ Results limited to 10,000 hits. Refine your search for more specific results.

regionname	pos	ref	alt	annotation	impact	samples	ahapids	achapids	acthapids	actghapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	status	chr	external
PTPN12_chr7_77532295_77645069	77625468	G G	GCGCGCGC others(25): Show GCGCGCGCGCTCTCTCTCTCTCTCTCTCTCTCT	intron_variant intron_variant	MODIFIER	NA19003.hp2 NA19003.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0159 a0001c0001t0001g0159	1	310	0.0032	32	c.102 others(51): Show c.1026-1236_1026-1235insGCGCGCGCTCTCTCTCTCTCTCTCTC TCTCTC	PTPN12	ENSG00000127947.16	transcript	ENST00000248594.11	protein_coding	12/17	INFO_REALIGN_3_PRIME	chr7	TogoVar
PTPN12_chr7_77532295_77645069	77625468	G G	GCTCTCTC others(25): Show GCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT	intron_variant intron_variant	MODIFIER	HG01884.hp1 HG01884.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0165 a0001c0001t0001g0165	1	310	0.0032	32	c.102 others(51): Show c.1026-1234_1026-1233insTCTCTCTCTCTCTCTCTCTCTCTCTC TCTCTC	PTPN12	ENSG00000127947.16	transcript	ENST00000248594.11	protein_coding	12/17	INFO_REALIGN_3_PRIME	chr7	TogoVar
PTPN12_chr7_77532295_77645069	77625472	G G	GCTCGCGC others(25): Show GCTCGCGCGCTCTCTCTCTCTCTCTCTCTCTCT	intron_variant intron_variant	MODIFIER	HG02109.hp2 HG02145.hp1 HG02280.hp2 others(1): Show HG02109.hp2 HG02145.hp1 HG02280.hp2 NA20300.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0002c0002 a0001c0001 a0002c0002	a0001c0001t0001 a0002c0002t0001 a0001c0001t0001 a0002c0002t0001	a0001c0001t0001g0129 a0001c0001t0001g0131 a0001c0001t0001g0132 others(1): Show a0001c0001t0001g0129 a0001c0001t0001g0131 a0001c0001t0001g0132 a0002c0002t0001g0021	4	310	0.0129	32	c.102 others(51): Show c.1026-1230_1026-1229insGCGCGCTCTCTCTCTCTCTCTCTCTC TCTCTC	PTPN12	ENSG00000127947.16	transcript	ENST00000248594.11	protein_coding	12/17	INFO_REALIGN_3_PRIME	chr7	TogoVar
PTPN14_chr1_214343700_214556602	214402437	C C	CAAAAAAA others(25): Show CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG02647.hp1 HG02647.hp1	a0004 a0004	a0004c0004 a0004c0004	a0004c0004t0175 a0004c0004t0175	a0004c0004t0175g0269 a0004c0004t0175g0269	1	272	0.0037	32	c.581 others(47): Show c.581+445_581+446insTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT TT	PTPN14	ENSG00000152104.12	transcript	ENST00000366956.10	protein_coding	6/18		chr1	TogoVar
PTPN14_chr1_214343700_214556602	214402659	A A	AAGGGAGG others(25): Show AAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGG	intron_variant intron_variant	MODIFIER	HG01257.hp1 HG01257.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0119 a0001c0001t0003g0119	1	272	0.0037	32	c.581 others(47): Show c.581+223_581+224insCCCTCCCTCCCTCCCTCCCTCCCTCCCTCC CT	PTPN14	ENSG00000152104.12	transcript	ENST00000366956.10	protein_coding	6/18		chr1	TogoVar
PTPN14_chr1_214343700_214556602	214402663	A A	AAGGGAGG others(25): Show AAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGG	intron_variant intron_variant	MODIFIER	HG01884.hp1 HG02055.hp2 HG02486.hp1 others(14): Show HG01884.hp1 HG02055.hp2 HG02486.hp1 HG02559.hp1 HG02630.hp2 HG02809.hp1 HG02809.hp2 HG02886.hp1 HG02886.hp2 HG02965.hp2 HG02976.hp1 HG03041.hp1 HG03471.hp1 HG03516.hp2 HG03540.hp1 NA18906.hp1 NA20129.hp2	a0001 a0002 a0003 others(1): Show a0001 a0002 a0003 a0004	a0001c0001 a0001c0006 a0001c0014 others(4): Show a0001c0001 a0001c0006 a0001c0014 a0001c0024 a0002c0003 a0003c0005 a0004c0004	a0001c0001t0010 a0001c0001t0021 a0001c0001t0057 others(13): Show a0001c0001t0010 a0001c0001t0021 a0001c0001t0057 a0001c0001t0058 a0001c0001t0134 a0001c0001t0176 a0001c0001t0177 a0001c0001t0178 a0001c0001t0179 a0001c0006t0077 a0001c0014t0154 a0001c0024t0102 a0002c0003t0084 a0002c0003t0087 a0003c0005t0166 a0004c0004t0005	a0001c0001t0010g0079 a0001c0001t0021g0018 a0001c0001t0021g0019 others(14): Show a0001c0001t0010g0079 a0001c0001t0021g0018 a0001c0001t0021g0019 a0001c0001t0057g0028 a0001c0001t0058g0009 a0001c0001t0134g0235 a0001c0001t0176g0265 a0001c0001t0177g0271 a0001c0001t0178g0268 a0001c0001t0179g0261 a0001c0006t0077g0072 a0001c0014t0154g0198 a0001c0024t0102g0078 a0002c0003t0084g0062 a0002c0003t0087g0077 a0003c0005t0166g0255 a0004c0004t0005g0081	17	272	0.0625	32	c.581 others(47): Show c.581+219_581+220insCCCTCCCTCCCTCCCTCCCTCCCTCCCTCC CT	PTPN14	ENSG00000152104.12	transcript	ENST00000366956.10	protein_coding	6/18		chr1	TogoVar
PTPN14_chr1_214343700_214556602	214402667	A A	AAGGGAGG others(25): Show AAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGG	intron_variant intron_variant	MODIFIER	HG02257.hp1 HG02615.hp2 HG02257.hp1 HG02615.hp2	a0001 a0001	a0001c0001 a0001c0023 a0001c0001 a0001c0023	a0001c0001t0110 a0001c0023t0169 a0001c0001t0110 a0001c0023t0169	a0001c0001t0110g0088 a0001c0023t0169g0256 a0001c0001t0110g0088 a0001c0023t0169g0256	2	272	0.0074	32	c.581 others(47): Show c.581+215_581+216insCCCTCCCTCCCTCCCTCCCTCCCTCCCTCC CT	PTPN14	ENSG00000152104.12	transcript	ENST00000366956.10	protein_coding	6/18		chr1	TogoVar
PTPN14_chr1_214343700_214556602	214402671	A A	AAGGGAGG others(25): Show AAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGG	intron_variant intron_variant	MODIFIER	HG02896.hp1 HG02896.hp1	a0004 a0004	a0004c0004 a0004c0004	a0004c0004t0073 a0004c0004t0073	a0004c0004t0073g0007 a0004c0004t0073g0007	1	272	0.0037	32	c.581 others(47): Show c.581+211_581+212insCCCTCCCTCCCTCCCTCCCTCCCTCCCTCC CT	PTPN14	ENSG00000152104.12	transcript	ENST00000366956.10	protein_coding	6/18		chr1	TogoVar
PTPN14_chr1_214343700_214556602	214520065	A A	AAAAAAAA others(25): Show AAAAAAAAAAAAAAAAAAAAAATATATATATAT	intron_variant intron_variant	MODIFIER	NA19084.hp1 NA19084.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0019 a0001c0001t0019	a0001c0001t0019g0095 a0001c0001t0019g0095	1	272	0.0037	32	c.-15 others(53): Show c.-155+31117_-155+31118insATATATATATATTTTTTTTTTTTT TTTTTTTT	PTPN14	ENSG00000152104.12	transcript	ENST00000366956.10	protein_coding	1/18		chr1	TogoVar
PTPN14_chr1_214343700_214556602	214520065	A A	AAAAAAAA others(25): Show AAAAAAAAAAAAAAAAAATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG00621.hp1 HG00621.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0036 a0001c0001t0036	a0001c0001t0036g0160 a0001c0001t0036g0160	1	272	0.0037	32	c.-15 others(53): Show c.-155+31117_-155+31118insATATATATATATATATTTTTTTTT TTTTTTTT	PTPN14	ENSG00000152104.12	transcript	ENST00000366956.10	protein_coding	1/18		chr1	TogoVar
PTPN14_chr1_214343700_214556602	214520065	A A	AAAAAAAA others(25): Show AAAAAAAAAAAAAAAATATATATATATATATAT	intron_variant intron_variant	MODIFIER	NA18979.hp1 NA18979.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0006 a0001c0002t0006	a0001c0002t0006g0098 a0001c0002t0006g0098	1	272	0.0037	32	c.-15 others(53): Show c.-155+31117_-155+31118insATATATATATATATATATTTTTTT TTTTTTTT	PTPN14	ENSG00000152104.12	transcript	ENST00000366956.10	protein_coding	1/18		chr1	TogoVar
PTPN14_chr1_214343700_214556602	214520065	A A	AAAAAAAA others(25): Show AAAAAAAAAAAAAATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG00438.hp1 NA18945.hp1 NA18963.hp2 others(3): Show HG00438.hp1 NA18945.hp1 NA18963.hp2 NA18970.hp1 NA19009.hp1 NA19079.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0003 a0001c0001t0044 others(2): Show a0001c0001t0002 a0001c0001t0003 a0001c0001t0044 a0001c0001t0095 a0001c0001t0097	a0001c0001t0002g0014 a0001c0001t0002g0015 a0001c0001t0003g0093 others(3): Show a0001c0001t0002g0014 a0001c0001t0002g0015 a0001c0001t0003g0093 a0001c0001t0044g0161 a0001c0001t0095g0097 a0001c0001t0097g0094	6	272	0.0221	32	c.-15 others(53): Show c.-155+31117_-155+31118insATATATATATATATATATATTTTT TTTTTTTT	PTPN14	ENSG00000152104.12	transcript	ENST00000366956.10	protein_coding	1/18		chr1	TogoVar
PTPN14_chr1_214343700_214556602	214520065	A A	AAAAAAAA others(25): Show AAAAAAAAAAAATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	NA19002.hp2 NA19002.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0016 a0001c0001t0002g0016	1	272	0.0037	32	c.-15 others(53): Show c.-155+31117_-155+31118insATATATATATATATATATATATTT TTTTTTTT	PTPN14	ENSG00000152104.12	transcript	ENST00000366956.10	protein_coding	1/18		chr1	TogoVar
PTPN1_chr20_50505383_50590241	50554380	A A	ATCTCTCT others(25): Show ATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC	intron_variant intron_variant	MODIFIER	HG02486.hp2 HG02486.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0311 a0001c0001t0001g0311	1	336	0.0030	32	c.64- others(47): Show c.64-6955_64-6954insTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC TC	PTPN1	ENSG00000196396.10	transcript	ENST00000371621.5	protein_coding	1/9	INFO_REALIGN_3_PRIME	chr20	TogoVar
PTPN2_chr18_12787152_12889237	12807586	A A	AAAAAAAA others(25): Show AAAAAAAAAAAAAAAAAATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG01978.hp2 HG01978.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0235 a0001c0001t0001g0235	1	370	0.0027	32	c.859 others(49): Show c.859-5436_859-5435insATATATATATATATATTTTTTTTTTTTT TTTT	PTPN2	ENSG00000175354.20	transcript	ENST00000309660.10	protein_coding	7/8		chr18	TogoVar
PTPN2_chr18_12787152_12889237	12807586	A A	AAAAAAAA others(25): Show AAAAAAAAAAAAAAAATATATATATATATATAT	intron_variant intron_variant	MODIFIER	NA19009.hp2 NA19009.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0326 a0001c0001t0001g0326	1	370	0.0027	32	c.859 others(49): Show c.859-5436_859-5435insATATATATATATATATATTTTTTTTTTT TTTT	PTPN2	ENSG00000175354.20	transcript	ENST00000309660.10	protein_coding	7/8		chr18	TogoVar
PTPN4_chr2_119754922_119989899	119844316	G G	GCCAGGCG others(25): Show GCCAGGCGGGGGGCTGACCCCCCCACCTCCCTC	intron_variant intron_variant	MODIFIER	HG03516.hp2 HG03516.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0031 a0001c0001t0031	a0001c0001t0031g0016 a0001c0001t0031g0016	1	252	0.0040	32	c.139 others(51): Show c.139-18218_139-18217insAGGCGGGGGGCTGACCCCCCCACCTC CCTCCC	PTPN4	ENSG00000088179.9	transcript	ENST00000263708.7	protein_coding	2/26	INFO_REALIGN_3_PRIME	chr2	TogoVar
PTPN9_chr15_75458251_75584315	75530796	A A	AATATATT others(25): Show AATATATTATAATATATCATAATATAATATAAT	intron_variant intron_variant	MODIFIER	NA20300.hp1 NA20300.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0045 a0001c0001t0045	a0001c0001t0045g0274 a0001c0001t0045g0274	1	326	0.0031	32	c.64- others(47): Show c.64-3567_64-3536dupATTATATTATATTATGATATATTATAATAT AT	PTPN9	ENSG00000169410.11	transcript	ENST00000618819.5	protein_coding	1/12		chr15	TogoVar
PTPN9_chr15_75458251_75584315	75537753	C C	CAAAAAAA others(25): Show CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	NA19088.hp1 NA19088.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0017 a0001c0001t0017	a0001c0001t0017g0162 a0001c0001t0017g0162	1	326	0.0031	32	c.64- others(49): Show c.64-10493_64-10492insTTTTTTTTTTTTTTTTTTTTTTTTTTTT TTTT	PTPN9	ENSG00000169410.11	transcript	ENST00000618819.5	protein_coding	1/12		chr15	TogoVar
PTPRA_chr20_2868481_3043669	2910317	A A	ATATATAT others(25): Show ATATATATTTTATATATAATATATTTTGTATAT	intron_variant intron_variant	MODIFIER	HG02602.hp2 HG04115.hp1 NA19070.hp2 HG02602.hp2 HG04115.hp1 NA19070.hp2	a0001 a0003 a0001 a0003	a0001c0001 a0003c0009 a0001c0001 a0003c0009	a0001c0001t0003 a0003c0009t0001 a0001c0001t0003 a0003c0009t0001	a0001c0001t0003g0242 a0003c0009t0001g0032 a0003c0009t0001g0048 a0001c0001t0003g0242 a0003c0009t0001g0032 a0003c0009t0001g0048	3	356	0.0084	32	c.-12 others(53): Show c.-128-12819_-128-12788dupTTTTATATATAATATATTTTGTAT ATTATATA	PTPRA	ENSG00000132670.21	transcript	ENST00000399903.7	protein_coding	1/23	INFO_REALIGN_3_PRIME	chr20	TogoVar
PTPRD_chr9_8309246_10618002	8353947	T T	TATGTGTA others(25): Show TATGTGTATATATGTATATATATGTGTGTGTAC	intron_variant intron_variant	MODIFIER	HG03139.hp2 HG03139.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0005 a0001c0002t0005	a0001c0002t0005g0025 a0001c0002t0005g0025	1	34	0.0294	32	c.466 others(53): Show c.4662-11970_4662-11969insGTACACACACATATATATACATAT ATACACAT	PTPRD	ENSG00000153707.19	transcript	ENST00000381196.9	protein_coding	39/45		chr9	TogoVar
PTPRD_chr9_8309246_10618002	8557455	T T	TATATATA others(25): Show TATATATATATATATATACACACATACACATAC	intron_variant intron_variant	MODIFIER	HG02257.hp1 HG03225.hp2 HG02257.hp1 HG03225.hp2	a0001 a0001	a0001c0003 a0001c0018 a0001c0003 a0001c0018	a0001c0003t0004 a0001c0018t0004 a0001c0003t0004 a0001c0018t0004	a0001c0003t0004g0027 a0001c0018t0004g0020 a0001c0003t0004g0027 a0001c0018t0004g0020	2	34	0.0588	32	c.353 others(51): Show c.353-28677_353-28676insGTATGTGTATGTGTGTATATATATAT ATATAT	PTPRD	ENSG00000153707.19	transcript	ENST00000381196.9	protein_coding	14/45		chr9	TogoVar
PTPRD_chr9_8309246_10618002	8581913	C C	CAAAAAAA others(25): Show CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	NA19240.hp1 NA19240.hp1	a0004 a0004	a0004c0016 a0004c0016	a0004c0016t0020 a0004c0016t0020	a0004c0016t0020g0011 a0004c0016t0020g0011	1	34	0.0294	32	c.352 others(51): Show c.352+51403_352+51404insTTTTTTTTTTTTTTTTTTTTTTTTTT TTTTTT	PTPRD	ENSG00000153707.19	transcript	ENST00000381196.9	protein_coding	14/45		chr9	TogoVar
PTPRD_chr9_8309246_10618002	8716621	T T	TTGTTACT others(25): Show TTGTTACTTAATGATTTCTGACTCAAGCCAGTA	intron_variant intron_variant	MODIFIER	HG01981.hp2 HG02055.hp2 HG02559.hp2 others(7): Show HG01981.hp2 HG02055.hp2 HG02559.hp2 HG03139.hp1 HG03139.hp2 HG03225.hp1 NA19030.hp2 NA19240.hp1 NA21309.hp1 NA21309.hp2	a0001 a0004 a0001 a0004	a0001c0001 a0001c0002 a0001c0003 others(4): Show a0001c0001 a0001c0002 a0001c0003 a0001c0004 a0001c0005 a0001c0017 a0004c0016	a0001c0001t0001 a0001c0001t0019 a0001c0002t0005 others(7): Show a0001c0001t0001 a0001c0001t0019 a0001c0002t0005 a0001c0002t0009 a0001c0002t0015 a0001c0003t0007 a0001c0004t0018 a0001c0005t0001 a0001c0017t0002 a0004c0016t0020	a0001c0001t0001g0004 a0001c0001t0019g0023 a0001c0002t0005g0025 others(7): Show a0001c0001t0001g0004 a0001c0001t0019g0023 a0001c0002t0005g0025 a0001c0002t0009g0017 a0001c0002t0015g0010 a0001c0003t0007g0029 a0001c0004t0018g0015 a0001c0005t0001g0019 a0001c0017t0002g0005 a0004c0016t0020g0011	10	34	0.2941	32	c.64+ others(49): Show c.64+17158_64+17159insTACTGGCTTGAGTCAGAAATCATTAAGT AACA	PTPRD	ENSG00000153707.19	transcript	ENST00000381196.9	protein_coding	12/45		chr9	TogoVar
PTPRD_chr9_8309246_10618002	8771180	C C	CAAAAAAA others(25): Show CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG02622.hp1 HG02622.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0013 a0001c0001t0013	a0001c0001t0013g0022 a0001c0001t0013g0022	1	34	0.0294	32	c.-10 others(53): Show c.-103-37235_-103-37234insTTTTTTTTTTTTTTTTTTTTTTTT TTTTTTTT	PTPRD	ENSG00000153707.19	transcript	ENST00000381196.9	protein_coding	11/45		chr9	TogoVar
PTPRD_chr9_8309246_10618002	9208020	C C	CTTTTTTT others(25): Show CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG01243.hp1 HG03834.hp1 HG01243.hp1 HG03834.hp1	a0001 a0001	a0001c0001 a0001c0004 a0001c0001 a0001c0004	a0001c0001t0001 a0001c0004t0003 a0001c0001t0001 a0001c0004t0003	a0001c0001t0001g0006 a0001c0004t0003g0001 a0001c0001t0001g0006 a0001c0004t0003g0001	2	34	0.0588	32	c.-20 others(53): Show c.-202-24658_-202-24657insAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAA	PTPRD	ENSG00000153707.19	transcript	ENST00000381196.9	protein_coding	9/45		chr9	TogoVar
PTPRD_chr9_8309246_10618002	9333503	A A	AGTATATA others(25): Show AGTATATATATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG02622.hp2 HG02622.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0009 a0001c0002t0001g0009	1	34	0.0294	32	c.-20 others(53): Show c.-203+63945_-203+63946insATATATATATATATATATATATAT ATATATAC	PTPRD	ENSG00000153707.19	transcript	ENST00000381196.9	protein_coding	9/45		chr9	TogoVar
PTPRD_chr9_8309246_10618002	9641089	T T	TTATGGAA others(25): Show TTATGGAATATTTGGAAATAATTGGAAAATAAA	intron_variant intron_variant	MODIFIER	HG02622.hp1 HG02683.hp1 HG02683.hp2 others(1): Show HG02622.hp1 HG02683.hp1 HG02683.hp2 HG03834.hp1	a0001 a0001	a0001c0001 a0001c0006 a0001c0012 a0001c0001 a0001c0006 a0001c0012	a0001c0001t0001 a0001c0001t0013 a0001c0006t0026 others(1): Show a0001c0001t0001 a0001c0001t0013 a0001c0006t0026 a0001c0012t0016	a0001c0001t0001g0006 a0001c0001t0013g0022 a0001c0006t0026g0034 others(1): Show a0001c0001t0001g0006 a0001c0001t0013g0022 a0001c0006t0026g0034 a0001c0012t0016g0028	4	34	0.1177	32	c.-28 others(53): Show c.-286-66309_-286-66308insTTTATTTTCCAATTATTTCCAAAT ATTCCATA	PTPRD	ENSG00000153707.19	transcript	ENST00000381196.9	protein_coding	7/45		chr9	TogoVar
PTPRD_chr9_8309246_10618002	10031647	T T	TATATATA others(25): Show TATATATATATATATATATACACACACACACAC	intron_variant intron_variant	MODIFIER	HG01109.hp2 HG01109.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0003 a0001c0002t0003	a0001c0002t0003g0024 a0001c0002t0003g0024	1	34	0.0294	32	c.-47 others(51): Show c.-472+2070_-472+2071insGTGTGTGTGTGTGTATATATATATAT ATATAT	PTPRD	ENSG00000153707.19	transcript	ENST00000381196.9	protein_coding	4/45		chr9	TogoVar
PTPRD_chr9_8309246_10618002	10031647	T T	TATATATA others(25): Show TATATATATATATATATATATATATATACACAC	intron_variant intron_variant	MODIFIER	HG02559.hp2 HG02559.hp2	a0001 a0001	a0001c0005 a0001c0005	a0001c0005t0001 a0001c0005t0001	a0001c0005t0001g0019 a0001c0005t0001g0019	1	34	0.0294	32	c.-47 others(51): Show c.-472+2070_-472+2071insGTGTGTATATATATATATATATATAT ATATAT	PTPRD	ENSG00000153707.19	transcript	ENST00000381196.9	protein_coding	4/45		chr9	TogoVar
PTPRD_chr9_8309246_10618002	10031647	T T	TATATATA others(25): Show TATATATATATATATATATGTATATATACACAC	intron_variant intron_variant	MODIFIER	HG02257.hp2 HG02257.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0018 a0001c0001t0002g0018	1	34	0.0294	32	c.-47 others(51): Show c.-472+2070_-472+2071insGTGTGTATATATACATATATATATAT ATATAT	PTPRD	ENSG00000153707.19	transcript	ENST00000381196.9	protein_coding	4/45		chr9	TogoVar
PTPRD_chr9_8309246_10618002	10065141	T T	TAGAAAGA others(25): Show TAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA	intron_variant intron_variant	MODIFIER	HG00642.hp1 HG00642.hp1	a0001 a0001	a0001c0013 a0001c0013	a0001c0013t0012 a0001c0013t0012	a0001c0013t0012g0014 a0001c0013t0012g0014	1	34	0.0294	32	c.-54 others(53): Show c.-544-31383_-544-31352dupTTCTTTCTTTCTTTCTTTCTTTCT TTCTTTCT	PTPRD	ENSG00000153707.19	transcript	ENST00000381196.9	protein_coding	3/45		chr9	TogoVar
PTPRD_chr9_8309246_10618002	10103377	T T	TTATATAT others(25): Show TTATATATATATATATATATATATATATATATA	intron_variant intron_variant	MODIFIER	HG00642.hp1 HG00642.hp1	a0001 a0001	a0001c0013 a0001c0013	a0001c0013t0012 a0001c0013t0012	a0001c0013t0012g0014 a0001c0013t0012g0014	1	34	0.0294	32	c.-54 others(53): Show c.-544-69588_-544-69587insTATATATATATATATATATATATA TATATATA	PTPRD	ENSG00000153707.19	transcript	ENST00000381196.9	protein_coding	3/45		chr9	TogoVar
PTPRD_chr9_8309246_10618002	10438008	C C	CATATATA others(25): Show CATATATATATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG03579.hp1 HG03579.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0022 a0001c0001t0022	a0001c0001t0022g0012 a0001c0001t0022g0012	1	34	0.0294	32	c.-59 others(53): Show c.-599-96992_-599-96991insATATATATATATATATATATATAT ATATATAT	PTPRD	ENSG00000153707.19	transcript	ENST00000381196.9	protein_coding	2/45		chr9	TogoVar
PTPRD_chr9_8309246_10618002	10479652	A A	AATAAATA others(25): Show AATAAATAAATAAATAAATAAATACATAAATAC	intron_variant intron_variant	MODIFIER	NA21309.hp1 NA21309.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0015 a0001c0002t0015	a0001c0002t0015g0010 a0001c0002t0015g0010	1	34	0.0294	32	c.-60 others(55): Show c.-600+132745_-600+132746insGTATTTATGTATTTATTTATTT ATTTATTTAT	PTPRD	ENSG00000153707.19	transcript	ENST00000381196.9	protein_coding	2/45		chr9	TogoVar
PTPRD_chr9_8309246_10618002	10479652	A A	AATAAATA others(25): Show AATAAATAAATAAATACATAAATACATAAATAC	intron_variant intron_variant	MODIFIER	HG02559.hp2 HG02559.hp2	a0001 a0001	a0001c0005 a0001c0005	a0001c0005t0001 a0001c0005t0001	a0001c0005t0001g0019 a0001c0005t0001g0019	1	34	0.0294	32	c.-60 others(55): Show c.-600+132745_-600+132746insGTATTTATGTATTTATGTATTT ATTTATTTAT	PTPRD	ENSG00000153707.19	transcript	ENST00000381196.9	protein_coding	2/45		chr9	TogoVar
PTPRD_chr9_8309246_10618002	10487966	G G	GTCTCTCT others(25): Show GTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC	intron_variant intron_variant	MODIFIER	NA21309.hp1 NA21309.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0015 a0001c0002t0015	a0001c0002t0015g0010 a0001c0002t0015g0010	1	34	0.0294	32	c.-60 others(55): Show c.-600+124400_-600+124431dupGAGAGAGAGAGAGAGAGAGAGA GAGAGAGAGA	PTPRD	ENSG00000153707.19	transcript	ENST00000381196.9	protein_coding	2/45		chr9	TogoVar
PTPRG_chr3_61556571_62302609	61610758	C C	CCTCCCTC others(25): Show CCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCT	intron_variant intron_variant	MODIFIER	HG02723.hp2 HG02965.hp2 NA19030.hp2 HG02723.hp2 HG02965.hp2 NA19030.hp2	a0001 a0004 a0001 a0004	a0001c0001 a0001c0016 a0004c0006 a0001c0001 a0001c0016 a0004c0006	a0001c0001t0002 a0001c0016t0001 a0004c0006t0002 a0001c0001t0002 a0001c0016t0001 a0004c0006t0002	a0001c0001t0002g0089 a0001c0016t0001g0059 a0004c0006t0002g0088 a0001c0001t0002g0089 a0001c0016t0001g0059 a0004c0006t0002g0088	3	94	0.0319	32	c.85+ others(49): Show c.85+48400_85+48401insCCCTCCCTCCCTCCCTCTCTCCCTCCCT CCCT	PTPRG	ENSG00000144724.20	transcript	ENST00000474889.6	protein_coding	1/29	INFO_REALIGN_3_PRIME	chr3	TogoVar
PTPRG_chr3_61556571_62302609	61926609	C C	CTCCCTCC others(25): Show CTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCT	intron_variant intron_variant	MODIFIER	HG02109.hp2 HG03017.hp1 HG02109.hp2 HG03017.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0004 a0001c0001t0001 a0001c0001t0004	a0001c0001t0001g0077 a0001c0001t0004g0026 a0001c0001t0001g0077 a0001c0001t0004g0026	2	94	0.0213	32	c.191 others(51): Show c.191-63013_191-63012insCTCCCTCCCTCCCTCCCTCCCTCCCT CCTTCC	PTPRG	ENSG00000144724.20	transcript	ENST00000474889.6	protein_coding	2/29	INFO_REALIGN_3_PRIME	chr3	TogoVar
PTPRG_chr3_61556571_62302609	61995745	T T	TTCCTTCC others(25): Show TTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCC	intron_variant intron_variant	MODIFIER	HG03471.hp1 HG03471.hp1	a0001 a0001	a0001c0005 a0001c0005	a0001c0005t0009 a0001c0005t0009	a0001c0005t0009g0022 a0001c0005t0009g0022	1	94	0.0106	32	c.370 others(49): Show c.370+5944_370+5945insTTCCTTCCTTCCTTCCTTCCTTCCTTCC CTCC	PTPRG	ENSG00000144724.20	transcript	ENST00000474889.6	protein_coding	3/29	INFO_REALIGN_3_PRIME	chr3	TogoVar
PTPRG_chr3_61556571_62302609	62265896	T T	TACACACA others(25): Show TACACACACACACACACACACACACACACACAC	intron_variant intron_variant	MODIFIER	HG00639.hp2 HG00639.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0015 a0001c0001t0003g0015	1	94	0.0106	32	c.265 others(51): Show c.2657-1484_2657-1483insACACACACACACACACACACACACAC ACACAC	PTPRG	ENSG00000144724.20	transcript	ENST00000474889.6	protein_coding	17/29	INFO_REALIGN_3_PRIME	chr3	TogoVar
PTPRG_chr3_61556571_62302609	62281538	C C	CTTTTTTT others(25): Show CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG02258.hp2 NA19030.hp1 HG02258.hp2 NA19030.hp1	a0001 a0006 a0001 a0006	a0001c0001 a0006c0007 a0001c0001 a0006c0007	a0001c0001t0010 a0006c0007t0004 a0001c0001t0010 a0006c0007t0004	a0001c0001t0010g0087 a0006c0007t0004g0060 a0001c0001t0010g0087 a0006c0007t0004g0060	2	94	0.0213	32	c.376 others(47): Show c.3766-12_3766-11insTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT TT	PTPRG	ENSG00000144724.20	transcript	ENST00000474889.6	protein_coding	26/29	INFO_REALIGN_3_PRIME	chr3	TogoVar
PTPRK_chr6_127963785_128525599	128322667	A A	AATATATA others(25): Show AATATATATATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG03209.hp1 HG03209.hp1	a0001 a0001	a0001c0007 a0001c0007	a0001c0007t0006 a0001c0007t0006	a0001c0007t0006g0001 a0001c0007t0006g0001	1	53	0.0189	32	c.224 others(47): Show c.224-358_224-357insATATATATATATATATATATATATATATAT AT	PTPRK	ENSG00000152894.15	transcript	ENST00000368226.9	protein_coding	2/29		chr6	TogoVar
PTPRM_chr18_7562316_8411856	7658330	T T	TTATATAT others(25): Show TTATATATATATATATATATATATATATATATA	intron_variant intron_variant	MODIFIER	HG02145.hp1 HG02145.hp1	a0001 a0001	a0001c0020 a0001c0020	a0001c0020t0001 a0001c0020t0001	a0001c0020t0001g0061 a0001c0020t0001g0061	1	80	0.0125	32	c.73+ others(49): Show c.73+90469_73+90470insTATATATATATATATATATATATATATA TATA	PTPRM	ENSG00000173482.17	transcript	ENST00000580170.6	protein_coding	1/32	INFO_REALIGN_3_PRIME	chr18	TogoVar
PTPRM_chr18_7562316_8411856	7984856	C C	CACATATA others(25): Show CACATATATAAATATATACATATAATTATATAT	intron_variant intron_variant	MODIFIER	HG00639.hp2 HG02559.hp2 HG02572.hp1 others(2): Show HG00639.hp2 HG02559.hp2 HG02572.hp1 HG02723.hp1 NA19043.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0001c0006 a0002c0010 others(1): Show a0001c0001 a0001c0006 a0002c0010 a0002c0011	a0001c0001t0002 a0001c0006t0002 a0001c0006t0004 others(2): Show a0001c0001t0002 a0001c0006t0002 a0001c0006t0004 a0002c0010t0001 a0002c0011t0002	a0001c0001t0002g0027 a0001c0006t0002g0012 a0001c0006t0004g0070 others(2): Show a0001c0001t0002g0027 a0001c0006t0002g0012 a0001c0006t0004g0070 a0002c0010t0001g0047 a0002c0011t0002g0029	5	80	0.0625	32	c.113 others(53): Show c.1132+29498_1132+29529dupATTATATATACATATATAAATATA TACATATA	PTPRM	ENSG00000173482.17	transcript	ENST00000580170.6	protein_coding	7/32	INFO_REALIGN_3_PRIME	chr18	TogoVar
PTPRM_chr18_7562316_8411856	7985098	T T	TATATATA others(25): Show TATATATACATATAATTGTATATACACATATAA	intron_variant intron_variant	MODIFIER	HG00741.hp2 HG00741.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0046 a0001c0002t0001g0046	1	80	0.0125	32	c.113 others(53): Show c.1132+29828_1132+29859dupTGTATATACACATATAAATATATA CATATAAT	PTPRM	ENSG00000173482.17	transcript	ENST00000580170.6	protein_coding	7/32	INFO_REALIGN_3_PRIME	chr18	TogoVar
PTPRM_chr18_7562316_8411856	7985469	G G	GTAAATAT others(25): Show GTAAATATATACATATACTGGTAGATACGTATA	intron_variant intron_variant	MODIFIER	HG02040.hp2 NA18612.hp1 HG02040.hp2 NA18612.hp1	a0001 a0001	a0001c0004 a0001c0013 a0001c0004 a0001c0013	a0001c0004t0001 a0001c0013t0002 a0001c0004t0001 a0001c0013t0002	a0001c0004t0001g0049 a0001c0013t0002g0034 a0001c0004t0001g0049 a0001c0013t0002g0034	2	80	0.0250	32	c.113 others(53): Show c.1132+30200_1132+30231dupCTGGTAGATACGTATATAAATATA TACATATA	PTPRM	ENSG00000173482.17	transcript	ENST00000580170.6	protein_coding	7/32	INFO_REALIGN_3_PRIME	chr18	TogoVar
PTPRM_chr18_7562316_8411856	8054297	T T	TTATATAT others(25): Show TTATATATATATATATATATATATATATATATA	intron_variant intron_variant	MODIFIER	HG01891.hp1 HG01891.hp1	a0001 a0001	a0001c0016 a0001c0016	a0001c0016t0001 a0001c0016t0001	a0001c0016t0001g0057 a0001c0016t0001g0057	1	80	0.0125	32	c.113 others(53): Show c.1133-15389_1133-15388insTATATATATATATATATATATATA TATATATA	PTPRM	ENSG00000173482.17	transcript	ENST00000580170.6	protein_coding	7/32		chr18	TogoVar
PTPRQ_chr12_80439235_80685273	80607431	T T	TTTCCTTC others(25): Show TTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCC	intron_variant intron_variant	MODIFIER	HG01109.hp2 HG03098.hp2 HG01109.hp2 HG03098.hp2	a0011 a0020 a0011 a0020	a0011c0008 a0020c0018 a0011c0008 a0020c0018	a0011c0008t0004 a0020c0018t0002 a0011c0008t0004 a0020c0018t0002	a0011c0008t0004g0135 a0020c0018t0002g0027 a0011c0008t0004g0135 a0020c0018t0002g0027	2	178	0.0112	32	c.473 others(51): Show c.4731+2253_4731+2284dupTCCTTCCTTCCTTCCTTCCTTCCTTC CTTCCT	PTPRQ	ENSG00000139304.16	transcript	ENST00000644991.3	protein_coding	27/44	INFO_REALIGN_3_PRIME	chr12	TogoVar
PTPRS_chr19_5200508_5345812	5303954	A A	AAAAAAAA others(25): Show AAAAAAAAAAAAATAAAAAAAAAAAAAAAAAAT	intron_variant intron_variant	MODIFIER	HG02148.hp2 HG02148.hp2	a0001 a0001	a0001c0007 a0001c0007	a0001c0007t0001 a0001c0007t0001	a0001c0007t0001g0102 a0001c0007t0001g0102	1	276	0.0036	32	c.-94 others(51): Show c.-94-17721_-94-17720insATTTTTTTTTTTTTTTTTTATTTTTT TTTTTT	PTPRS	ENSG00000105426.19	transcript	ENST00000262963.11	protein_coding	1/37		chr19	TogoVar

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