Joint Open Genome and Omics Platform (JoGo)

Search by Variant

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Chr

Chromosome name (e.g., chr11).

Snpeff genename

Exact SnpEff gene name.

Sampleids

Target sampleid (e.g. HG02615).

Snpeff haplotype class

Haplotype-annotation class (e.g., ahapid, ahapid+chapid).

Snpeff annotation impact

Exact impact level (e.g., HIGH, MODERATE, LOW).

Snpeff annotation impact detail

Keyword match in SnpEff annotation.

Hapid

One or more haplotype IDs (comma-separated; e.g., a0001, a01, a0001c0001, a01c02, a1c2, a0001c0001t0005, a0001c0001t0005g0018).

Samplehapid

Sample haplotype IDs to include (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

No_hapid

Haplotype IDs to exclude (comma-separated; e.g., a0001, a0002, a0001c0001, a0001c0001t0005, a1, a01).

No_samplehapid

Sample haplotype IDs to exclude (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

Start

Start position (GRCh38).

End

End position (GRCh38).

Minac

Minimum alternate allele count (≥).

Maxac

Maximum alternate allele count (≤).

Minlen

Minimum variant length (≥).

Maxlen

Maximum variant length (≤).

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⚠️ Results limited to 10,000 hits. Refine your search for more specific results.

regionname	pos	ref	alt	annotation	impact	samples	ahapids	achapids	acthapids	actghapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	external
TNIK_chr3_171053414_171465405	171077815	G G	GTGTATAT others(25): Show GTGTATATATGTATGTACATACATATATACAGC	intron_variant intron_variant	MODIFIER	HG02622.hp1 HG02922.hp1 HG03139.hp1 others(3): Show HG02622.hp1 HG02922.hp1 HG03139.hp1 HG03209.hp2 NA18906.hp2 NA19240.hp2	a0001 a0001	a0001c0002 a0001c0026 a0001c0002 a0001c0026	a0001c0002t0002 a0001c0002t0003 a0001c0026t0002 a0001c0002t0002 a0001c0002t0003 a0001c0026t0002	a0001c0002t0002g0003 a0001c0002t0002g0021 a0001c0002t0002g0067 others(3): Show a0001c0002t0002g0003 a0001c0002t0002g0021 a0001c0002t0002g0067 a0001c0002t0002g0081 a0001c0002t0003g0101 a0001c0026t0002g0054	6	104	0.0577	32	c.344 others(51): Show c.3448+1671_3448+1702dupGCTGTATATATGTATGTACATACATA TATACA	TNIK	ENSG00000154310.17	transcript	ENST00000436636.7	protein_coding	28/32			chr3	TogoVar
TNIP1_chr5_151024945_151086034	151073582	T T	TTGTGTGT others(25): Show TTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG	intron_variant intron_variant	MODIFIER	HG00621.hp1 HG01123.hp1 NA19060.hp1 HG00621.hp1 HG01123.hp1 NA19060.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0002 a0001c0002t0002	a0001c0002t0002g0345 a0001c0002t0002g0346 a0001c0002t0002g0347 a0001c0002t0002g0345 a0001c0002t0002g0346 a0001c0002t0002g0347	3	402	0.0075	32	c.-37 others(49): Show c.-37+7297_-37+7298insCACACACACACACACACACACACACACA CACA	TNIP1	ENSG00000145901.16	transcript	ENST00000521591.6	protein_coding	1/17			chr5	TogoVar
TNK1_chr17_7376089_7394742	7378277	G G	GAGAAAGA others(25): Show GAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00438.hp1 HG00738.hp2 HG01069.hp2 others(11): Show HG00438.hp1 HG00738.hp2 HG01069.hp2 HG01109.hp2 HG01192.hp2 NA18522.hp1 NA18968.hp2 NA18974.hp2 NA18989.hp2 NA19010.hp2 NA19057.hp2 NA19059.hp1 NA19081.hp1 NA21309.hp2	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0001 a0001c0003t0003 a0001c0003t0001 a0001c0003t0003	a0001c0003t0001g0010 a0001c0003t0003g0002 a0001c0003t0003g0012 others(3): Show a0001c0003t0001g0010 a0001c0003t0003g0002 a0001c0003t0003g0012 a0001c0003t0003g0074 a0001c0003t0003g0084 a0001c0003t0003g0090	14	452	0.0310	32	c.-29 others(43): Show c.-2929_-2928insAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA	TNK1	ENSG00000174292.13	transcript	ENST00000688331.1	protein_coding		2811		chr17	TogoVar
TNKS_chr8_9550912_9787346	9717071	T T	TTATATAT others(25): Show TTATATATATATATATATATATATATATATATA	intron_variant intron_variant	MODIFIER	HG01496.hp1 HG02015.hp2 HG03490.hp2 others(1): Show HG01496.hp1 HG02015.hp2 HG03490.hp2 NA18954.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0001 a0001c0001t0002	a0001c0001t0001g0159 a0001c0001t0002g0136 a0001c0001t0002g0150 others(1): Show a0001c0001t0001g0159 a0001c0001t0002g0136 a0001c0001t0002g0150 a0001c0001t0002g0162	4	272	0.0147	32	c.175 others(51): Show c.1750-3303_1750-3302insTATATATATATATATATATATATATA TATATA	TNKS	ENSG00000173273.17	transcript	ENST00000310430.11	protein_coding	11/26			chr8	TogoVar
TNKS_chr8_9550912_9787346	9717072	A A	AATATATA others(25): Show AATATATATATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG03098.hp1 HG03098.hp1	a0001 a0001	a0001c0005 a0001c0005	a0001c0005t0003 a0001c0005t0003	a0001c0005t0003g0109 a0001c0005t0003g0109	1	272	0.0037	32	c.175 others(51): Show c.1750-3272_1750-3271insATATATATATATATATATATATATAT ATATAT	TNKS	ENSG00000173273.17	transcript	ENST00000310430.11	protein_coding	11/26		INFO_REALIGN_3_PRIME	chr8	TogoVar
TNKS_chr8_9550912_9787346	9717101	A A	ATATATAT others(25): Show ATATATATATATATATATATATATATATATATT	intron_variant intron_variant	MODIFIER	HG01099.hp2 HG01099.hp2	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0003 a0001c0003t0003	a0001c0003t0003g0081 a0001c0003t0003g0081	1	272	0.0037	32	c.175 others(51): Show c.1750-3272_1750-3271insATATATATATATATATATATATATAT ATATTT	TNKS	ENSG00000173273.17	transcript	ENST00000310430.11	protein_coding	11/26		INFO_REALIGN_3_PRIME	chr8	TogoVar
TNKS_chr8_9550912_9787346	9717101	A A	ATATATAT others(25): Show ATATATATATATATATATATATATATATATTTT	intron_variant intron_variant	MODIFIER	NA19043.hp2 NA19043.hp2	a0001 a0001	a0001c0007 a0001c0007	a0001c0007t0043 a0001c0007t0043	a0001c0007t0043g0076 a0001c0007t0043g0076	1	272	0.0037	32	c.175 others(51): Show c.1750-3272_1750-3271insATATATATATATATATATATATATAT ATTTTT	TNKS	ENSG00000173273.17	transcript	ENST00000310430.11	protein_coding	11/26		INFO_REALIGN_3_PRIME	chr8	TogoVar
TNKS_chr8_9550912_9787346	9717101	A A	ATATATAT others(25): Show ATATATATATATATATATATATTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG02572.hp2 HG02572.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0046 a0001c0002t0046	a0001c0002t0046g0184 a0001c0002t0046g0184	1	272	0.0037	32	c.175 others(51): Show c.1750-3272_1750-3271insATATATATATATATATATATTTTTTT TTTTTT	TNKS	ENSG00000173273.17	transcript	ENST00000310430.11	protein_coding	11/26		INFO_REALIGN_3_PRIME	chr8	TogoVar
TNKS_chr8_9550912_9787346	9721298	T T	TTATATAT others(25): Show TTATATATATATATATATATATATATATATATA	intron_variant intron_variant	MODIFIER	HG01071.hp1 HG01099.hp1 HG02004.hp2 others(7): Show HG01071.hp1 HG01099.hp1 HG02004.hp2 HG02015.hp1 HG02080.hp2 HG02293.hp1 HG02809.hp2 NA18966.hp2 NA18968.hp2 NA19066.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0005 others(2): Show a0001c0001 a0001c0002 a0001c0005 a0001c0007 a0001c0013	a0001c0001t0017 a0001c0002t0004 a0001c0005t0003 others(3): Show a0001c0001t0017 a0001c0002t0004 a0001c0005t0003 a0001c0005t0008 a0001c0007t0004 a0001c0013t0004	a0001c0001t0017g0235 a0001c0002t0004g0239 a0001c0002t0004g0246 others(7): Show a0001c0001t0017g0235 a0001c0002t0004g0239 a0001c0002t0004g0246 a0001c0002t0004g0254 a0001c0002t0004g0269 a0001c0005t0003g0031 a0001c0005t0008g0035 a0001c0007t0004g0130 a0001c0013t0004g0261 a0001c0013t0004g0263	10	272	0.0368	32	c.192 others(49): Show c.1921+767_1921+768insTATATATATATATATATATATATATATA TATA	TNKS	ENSG00000173273.17	transcript	ENST00000310430.11	protein_coding	12/26		INFO_REALIGN_3_PRIME	chr8	TogoVar
TNNI3K_chr1_74230387_74549428	74486201	A A	AAGAGAGA others(25): Show AAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG	intron_variant intron_variant	MODIFIER	HG02818.hp1 HG02818.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0042 a0001c0001t0001g0042	1	194	0.0052	32	c.212 others(51): Show c.2122-2987_2122-2956dupAGAGAGAGAGAGAGAGAGAGAGAGAG AGAGAG	TNNI3K	ENSG00000116783.15	transcript	ENST00000326637.8	protein_coding	21/24		INFO_REALIGN_3_PRIME	chr1	TogoVar
TNR_chr1_175310194_175748595	175331046	T T	TTTCTTTC others(25): Show TTTCTTTCTTTCTTTCTTTCCTTCCTTCCTTCC	intron_variant intron_variant	MODIFIER	HG01081.hp2 HG01081.hp2	a0006 a0006	a0006c0015 a0006c0015	a0006c0015t0009 a0006c0015t0009	a0006c0015t0009g0084 a0006c0015t0009g0084	1	132	0.0076	32	c.363 others(49): Show c.3632-812_3632-811insGGAAGGAAGGAAGGAAAGAAAGAAAGAA AGAA	TNR	ENSG00000116147.18	transcript	ENST00000367674.7	protein_coding	20/22			chr1	TogoVar
TNR_chr1_175310194_175748595	175417011	A A	AAAAGAAA others(25): Show AAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	intron_variant intron_variant	MODIFIER	HG00140.hp1 HG00323.hp2 HG00741.hp1 others(11): Show HG00140.hp1 HG00323.hp2 HG00741.hp1 HG01069.hp1 HG01071.hp1 HG02738.hp2 HG02922.hp1 HG03041.hp1 HG03239.hp1 HG03453.hp1 HG03471.hp1 HG03486.hp1 NA18747.hp1 NA19240.hp1	a0001 a0002 a0003 others(3): Show a0001 a0002 a0003 a0004 a0010 a0013	a0001c0002 a0001c0009 a0001c0014 others(8): Show a0001c0002 a0001c0009 a0001c0014 a0002c0004 a0002c0006 a0002c0008 a0003c0001 a0004c0017 a0004c0029 a0010c0028 a0013c0031	a0001c0002t0001 a0001c0009t0017 a0001c0014t0065 others(9): Show a0001c0002t0001 a0001c0009t0017 a0001c0014t0065 a0001c0014t0067 a0002c0004t0003 a0002c0006t0048 a0002c0008t0006 a0003c0001t0014 a0004c0017t0002 a0004c0029t0030 a0010c0028t0006 a0013c0031t0002	a0001c0002t0001g0066 a0001c0009t0017g0035 a0001c0014t0065g0108 others(11): Show a0001c0002t0001g0066 a0001c0009t0017g0035 a0001c0014t0065g0108 a0001c0014t0067g0063 a0002c0004t0003g0013 a0002c0004t0003g0014 a0002c0006t0048g0007 a0002c0008t0006g0115 a0003c0001t0014g0058 a0003c0001t0014g0059 a0004c0017t0002g0021 a0004c0029t0030g0088 a0010c0028t0006g0112 a0013c0031t0002g0092	14	132	0.1061	32	c.-63 others(51): Show c.-63-10266_-63-10235dupCTTTCTTTCTTTCTTTCTTTCTTTCT TTCTTT	TNR	ENSG00000116147.18	transcript	ENST00000367674.7	protein_coding	2/22			chr1	TogoVar
TNR_chr1_175310194_175748595	175417011	A A	AAAAGAAA others(25): Show AAAAGAAAGAAAGAAAGAAAGAAAGAAAGGAAG	intron_variant intron_variant	MODIFIER	HG01081.hp2 HG01978.hp2 HG01081.hp2 HG01978.hp2	a0006 a0006	a0006c0015 a0006c0015	a0006c0015t0009 a0006c0015t0009	a0006c0015t0009g0084 a0006c0015t0009g0099 a0006c0015t0009g0084 a0006c0015t0009g0099	2	132	0.0152	32	c.-63 others(51): Show c.-63-10235_-63-10234insCTTCCTTTCTTTCTTTCTTTCTTTCT TTCTTT	TNR	ENSG00000116147.18	transcript	ENST00000367674.7	protein_coding	2/22			chr1	TogoVar
TNR_chr1_175310194_175748595	175431911	A A	ATCTCTCT others(25): Show ATCTCTCTCTCTCTCTCTCTCTCTCTCCTTCTC	intron_variant intron_variant	MODIFIER	HG02280.hp1 HG02615.hp2 HG02886.hp1 others(3): Show HG02280.hp1 HG02615.hp2 HG02886.hp1 HG02922.hp2 HG03486.hp2 HG03540.hp2	a0001 a0003 a0007 a0001 a0003 a0007	a0001c0003 a0001c0005 a0003c0001 others(2): Show a0001c0003 a0001c0005 a0003c0001 a0007c0038 a0007c0039	a0001c0003t0008 a0001c0005t0007 a0003c0001t0013 others(2): Show a0001c0003t0008 a0001c0005t0007 a0003c0001t0013 a0007c0038t0007 a0007c0039t0019	a0001c0003t0008g0004 a0001c0003t0008g0114 a0001c0005t0007g0081 others(3): Show a0001c0003t0008g0004 a0001c0003t0008g0114 a0001c0005t0007g0081 a0003c0001t0013g0073 a0007c0038t0007g0040 a0007c0039t0019g0098	6	132	0.0455	32	c.-63 others(51): Show c.-63-25135_-63-25134insGAGAAGGAGAGAGAGAGAGAGAGAGA GAGAGA	TNR	ENSG00000116147.18	transcript	ENST00000367674.7	protein_coding	2/22			chr1	TogoVar
TNR_chr1_175310194_175748595	175431911	A A	ATCTCTCT others(25): Show ATCTCTCTCTCTCTCTCTCTCTCTCTCTCCTTC	intron_variant intron_variant	MODIFIER	HG03225.hp2 HG03225.hp2	a0008 a0008	a0008c0018 a0008c0018	a0008c0018t0059 a0008c0018t0059	a0008c0018t0059g0087 a0008c0018t0059g0087	1	132	0.0076	32	c.-63 others(51): Show c.-63-25135_-63-25134insGAAGGAGAGAGAGAGAGAGAGAGAGA GAGAGA	TNR	ENSG00000116147.18	transcript	ENST00000367674.7	protein_coding	2/22			chr1	TogoVar
TNR_chr1_175310194_175748595	175480419	A A	AAAAGAAA others(25): Show AAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	intron_variant intron_variant	MODIFIER	HG03195.hp2 HG03195.hp2	a0004 a0004	a0004c0022 a0004c0022	a0004c0022t0013 a0004c0022t0013	a0004c0022t0013g0050 a0004c0022t0013g0050	1	132	0.0076	32	c.-64 others(51): Show c.-64+47849_-64+47850insCTTTCTTTCTTTCTTTCTTTCTTTCT TTCTTT	TNR	ENSG00000116147.18	transcript	ENST00000367674.7	protein_coding	2/22			chr1	TogoVar
TNR_chr1_175310194_175748595	175640791	G G	GTATATAT others(25): Show GTATATATATATATATATATATACATATATATA	intron_variant intron_variant	MODIFIER	HG03516.hp1 NA19043.hp1 HG03516.hp1 NA19043.hp1	a0001 a0001	a0001c0003 a0001c0010 a0001c0003 a0001c0010	a0001c0003t0004 a0001c0010t0012 a0001c0003t0004 a0001c0010t0012	a0001c0003t0004g0093 a0001c0010t0012g0083 a0001c0003t0004g0093 a0001c0010t0012g0083	2	132	0.0152	32	c.-16 others(55): Show c.-165+102434_-165+102435insTATATATATGTATATATATATA TATATATATA	TNR	ENSG00000116147.18	transcript	ENST00000367674.7	protein_coding	1/22			chr1	TogoVar
TNR_chr1_175310194_175748595	175657883	A A	ATATATAT others(25): Show ATATATATATATATATATATATATATATATATG	intron_variant intron_variant	MODIFIER	HG02280.hp2 HG02615.hp1 HG02630.hp2 HG02280.hp2 HG02615.hp1 HG02630.hp2	a0001 a0002 a0001 a0002	a0001c0003 a0002c0008 a0002c0027 a0001c0003 a0002c0008 a0002c0027	a0001c0003t0025 a0002c0008t0019 a0002c0027t0050 a0001c0003t0025 a0002c0008t0019 a0002c0027t0050	a0001c0003t0025g0001 a0002c0008t0019g0096 a0002c0027t0050g0105 a0001c0003t0025g0001 a0002c0008t0019g0096 a0002c0027t0050g0105	3	132	0.0227	32	c.-16 others(53): Show c.-165+85342_-165+85343insCATATATATATATATATATATATA TATATATA	TNR	ENSG00000116147.18	transcript	ENST00000367674.7	protein_coding	1/22			chr1	TogoVar
TNS1_chr2_217794791_218007995	217809404	G G	GATGGATG others(25): Show GATGGATGGATGGATGGATGGATGGATAGGTGC	intron_variant intron_variant	MODIFIER	HG02148.hp2 HG04115.hp2 HG02148.hp2 HG04115.hp2	a0004 a0005 a0004 a0005	a0004c0011 a0005c0056 a0004c0011 a0005c0056	a0004c0011t0004 a0005c0056t0013 a0004c0011t0004 a0005c0056t0013	a0004c0011t0004g0142 a0005c0056t0013g0212 a0004c0011t0004g0142 a0005c0056t0013g0212	2	244	0.0082	32	c.527 others(49): Show c.5273+418_5273+419insGCACCTATCCATCCATCCATCCATCCAT CCAT	TNS1	ENSG00000079308.21	transcript	ENST00000682258.1	protein_coding	30/32			chr2	TogoVar
TNS1_chr2_217794791_218007995	217809604	G G	GATGGATG others(25): Show GATGGATGGATGGATGGATGGATGGATGGATGC	intron_variant intron_variant	MODIFIER	HG04115.hp1 HG04115.hp1	a0001 a0001	a0001c0015 a0001c0015	a0001c0015t0005 a0001c0015t0005	a0001c0015t0005g0170 a0001c0015t0005g0170	1	244	0.0041	32	c.527 others(49): Show c.5273+218_5273+219insGCATCCATCCATCCATCCATCCATCCAT CCAT	TNS1	ENSG00000079308.21	transcript	ENST00000682258.1	protein_coding	30/32			chr2	TogoVar
TNS3_chr7_47270154_47587111	47530838	A A	AAAAAAAA others(25): Show AAAAAAAAAAAAAAAATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG02280.hp2 HG02280.hp2	a0006 a0006	a0006c0037 a0006c0037	a0006c0037t0028 a0006c0037t0028	a0006c0037t0028g0006 a0006c0037t0028g0006	1	196	0.0051	32	c.-26 others(51): Show c.-264-1692_-264-1691insATATATATATATATATATTTTTTTTT TTTTTT	TNS3	ENSG00000136205.18	transcript	ENST00000311160.14	protein_coding	1/30			chr7	TogoVar
TNS3_chr7_47270154_47587111	47530838	A A	AAAAAAAA others(25): Show AAAAAAAAAAAAAATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG02717.hp2 HG02809.hp1 HG03453.hp2 others(1): Show HG02717.hp2 HG02809.hp1 HG03453.hp2 NA19057.hp2	a0001 a0006 a0001 a0006	a0001c0003 a0001c0006 a0006c0035 others(1): Show a0001c0003 a0001c0006 a0006c0035 a0006c0036	a0001c0003t0043 a0001c0006t0002 a0006c0035t0002 others(1): Show a0001c0003t0043 a0001c0006t0002 a0006c0035t0002 a0006c0036t0012	a0001c0003t0043g0004 a0001c0006t0002g0090 a0006c0035t0002g0005 others(1): Show a0001c0003t0043g0004 a0001c0006t0002g0090 a0006c0035t0002g0005 a0006c0036t0012g0088	4	196	0.0204	32	c.-26 others(51): Show c.-264-1692_-264-1691insATATATATATATATATATATTTTTTT TTTTTT	TNS3	ENSG00000136205.18	transcript	ENST00000311160.14	protein_coding	1/30			chr7	TogoVar
TNS3_chr7_47270154_47587111	47530838	A A	AAAAAAAA others(25): Show AAAAAAAAAAAATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG03041.hp1 HG03041.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0003 a0001c0001t0003g0003	1	196	0.0051	32	c.-26 others(51): Show c.-264-1692_-264-1691insATATATATATATATATATATATTTTT TTTTTT	TNS3	ENSG00000136205.18	transcript	ENST00000311160.14	protein_coding	1/30			chr7	TogoVar
TOGARAM1_chr14_44957190_45079431	45003766	C C	CATGCATG others(25): Show CATGCATGTATATGTATACATATACATGCATGT	intron_variant intron_variant	MODIFIER	HG02486.hp2 HG03139.hp2 HG02486.hp2 HG03139.hp2	a0002 a0002	a0002c0003 a0002c0003	a0002c0003t0002 a0002c0003t0002	a0002c0003t0002g0051 a0002c0003t0002g0052 a0002c0003t0002g0051 a0002c0003t0002g0052	2	178	0.0112	32	c.233 others(49): Show c.2339-292_2339-291insCATGTATATGTATACATATACATGCATG TATG	TOGARAM1	ENSG00000198718.13	transcript	ENST00000361462.7	protein_coding	3/19		INFO_REALIGN_3_PRIME	chr14	TogoVar
TOGARAM1_chr14_44957190_45079431	45003766	C C	CATGTATG others(25): Show CATGTATGTATATGTATACATATACATGCATGT	intron_variant intron_variant	MODIFIER	HG01106.hp2 HG01109.hp2 HG01358.hp2 others(25): Show HG01106.hp2 HG01109.hp2 HG01358.hp2 HG01516.hp2 HG01884.hp1 HG01891.hp1 HG02055.hp1 HG02109.hp1 HG02258.hp1 HG02559.hp2 HG02647.hp2 HG02723.hp1 HG02886.hp1 HG02886.hp2 HG02896.hp2 HG02897.hp1 HG02965.hp1 HG02976.hp1 HG03098.hp1 HG03139.hp1 HG03453.hp1 HG03471.hp2 HG04199.hp1 HG06807.hp2 NA18906.hp1 NA18906.hp2 NA19043.hp1 NA19240.hp1	a0001 a0002 a0005 others(2): Show a0001 a0002 a0005 a0007 a0009	a0001c0001 a0002c0003 a0002c0016 others(3): Show a0001c0001 a0002c0003 a0002c0016 a0005c0008 a0007c0010 a0009c0012	a0001c0001t0002 a0002c0003t0002 a0002c0003t0003 others(5): Show a0001c0001t0002 a0002c0003t0002 a0002c0003t0003 a0002c0003t0006 a0002c0016t0003 a0005c0008t0002 a0007c0010t0002 a0009c0012t0002	a0001c0001t0002g0067 a0001c0001t0002g0068 a0001c0001t0002g0069 others(25): Show a0001c0001t0002g0067 a0001c0001t0002g0068 a0001c0001t0002g0069 a0001c0001t0002g0070 a0002c0003t0002g0003 a0002c0003t0002g0013 a0002c0003t0002g0014 a0002c0003t0002g0015 a0002c0003t0002g0016 a0002c0003t0002g0018 a0002c0003t0002g0020 a0002c0003t0002g0021 a0002c0003t0002g0022 a0002c0003t0002g0049 a0002c0003t0002g0050 a0002c0003t0002g0053 a0002c0003t0002g0054 a0002c0003t0002g0055 a0002c0003t0002g0056 a0002c0003t0002g0057 a0002c0003t0003g0008 a0002c0003t0003g0009 a0002c0003t0006g0002 a0002c0016t0003g0007 a0005c0008t0002g0012 a0005c0008t0002g0017 a0007c0010t0002g0010 a0009c0012t0002g0019	28	178	0.1573	32	c.233 others(49): Show c.2339-291_2339-290insATGTATATGTATACATATACATGCATGT ATGT	TOGARAM1	ENSG00000198718.13	transcript	ENST00000361462.7	protein_coding	3/19		INFO_REALIGN_3_PRIME	chr14	TogoVar
TOMM20L_chr14_58390930_58413702	58404099	G G	GTGTGTAT others(25): Show GTGTGTATATATATATATATATATATATATATA	intron_variant intron_variant	MODIFIER	HG01099.hp2 HG01515.hp1 HG01517.hp1 others(3): Show HG01099.hp2 HG01515.hp1 HG01517.hp1 HG02165.hp1 NA19009.hp2 NA19079.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0004 a0001c0001t0001g0031 a0001c0001t0001g0047 others(2): Show a0001c0001t0001g0004 a0001c0001t0001g0031 a0001c0001t0001g0047 a0001c0001t0001g0165 a0001c0001t0001g0193	6	362	0.0166	32	c.262 others(49): Show c.262+1339_262+1340insGTGTATATATATATATATATATATATAT ATAT	TOMM20L	ENSG00000196860.8	transcript	ENST00000360945.7	protein_coding	3/4		INFO_REALIGN_3_PRIME	chr14	TogoVar
TOMM20L_chr14_58390930_58413702	58404099	G G	GTGTGTGT others(25): Show GTGTGTGTATATATATATATATATATATATATA	intron_variant intron_variant	MODIFIER	HG00609.hp1 HG00609.hp2 HG02155.hp2 others(3): Show HG00609.hp1 HG00609.hp2 HG02155.hp2 NA18952.hp1 NA18970.hp2 NA19084.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0070 a0001c0001t0001g0221 a0001c0001t0001g0272 others(3): Show a0001c0001t0001g0070 a0001c0001t0001g0221 a0001c0001t0001g0272 a0001c0001t0001g0294 a0001c0001t0001g0295 a0001c0001t0001g0342	6	362	0.0166	32	c.262 others(49): Show c.262+1339_262+1340insGTGTGTATATATATATATATATATATAT ATAT	TOMM20L	ENSG00000196860.8	transcript	ENST00000360945.7	protein_coding	3/4		INFO_REALIGN_3_PRIME	chr14	TogoVar
TOMM20L_chr14_58390930_58413702	58404119	A A	ATATATAT others(25): Show ATATATATATATATATATATATATATATTTTTT	intron_variant intron_variant	MODIFIER	HG00544.hp1 HG02135.hp1 NA18964.hp1 others(1): Show HG00544.hp1 HG02135.hp1 NA18964.hp1 NA18992.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0009 a0001c0001t0001g0069 a0001c0001t0001g0195 a0001c0001t0001g0009 a0001c0001t0001g0069 a0001c0001t0001g0195	4	362	0.0111	32	c.262 others(49): Show c.262+1359_262+1360insATATATATATATATATATATATATATTT TTTT	TOMM20L	ENSG00000196860.8	transcript	ENST00000360945.7	protein_coding	3/4		INFO_REALIGN_3_PRIME	chr14	TogoVar
TOMM20L_chr14_58390930_58413702	58404119	A A	ATATATAT others(25): Show ATATATATATATATATATATATATATTTTTTTT	intron_variant intron_variant	MODIFIER	HG01167.hp2 HG01928.hp2 HG01981.hp1 others(2): Show HG01167.hp2 HG01928.hp2 HG01981.hp1 HG03239.hp1 NA18985.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0142 a0001c0001t0001g0199 a0001c0001t0001g0200 others(2): Show a0001c0001t0001g0142 a0001c0001t0001g0199 a0001c0001t0001g0200 a0001c0001t0001g0263 a0001c0001t0001g0276	5	362	0.0138	32	c.262 others(49): Show c.262+1359_262+1360insATATATATATATATATATATATATTTTT TTTT	TOMM20L	ENSG00000196860.8	transcript	ENST00000360945.7	protein_coding	3/4		INFO_REALIGN_3_PRIME	chr14	TogoVar
TOMM20L_chr14_58390930_58413702	58404119	A A	ATATATAT others(25): Show ATATATATATATATATATATATATTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG01433.hp1 HG02257.hp1 NA19240.hp1 HG01433.hp1 HG02257.hp1 NA19240.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0085 a0001c0001t0001g0144 a0001c0001t0001g0264 a0001c0001t0001g0085 a0001c0001t0001g0144 a0001c0001t0001g0264	3	362	0.0083	32	c.262 others(49): Show c.262+1359_262+1360insATATATATATATATATATATATTTTTTT TTTT	TOMM20L	ENSG00000196860.8	transcript	ENST00000360945.7	protein_coding	3/4		INFO_REALIGN_3_PRIME	chr14	TogoVar
TOMM20L_chr14_58390930_58413702	58404119	A A	ATATATAT others(25): Show ATATATATATATATATATATATTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	NA18967.hp1 NA18967.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0163 a0001c0001t0001g0163	1	362	0.0028	32	c.262 others(49): Show c.262+1359_262+1360insATATATATATATATATATATTTTTTTTT TTTT	TOMM20L	ENSG00000196860.8	transcript	ENST00000360945.7	protein_coding	3/4		INFO_REALIGN_3_PRIME	chr14	TogoVar
TOMM20L_chr14_58390930_58413702	58404119	A A	ATATATAT others(25): Show ATATATATATATATATTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG03834.hp2 HG03834.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0267 a0001c0001t0001g0267	1	362	0.0028	32	c.262 others(49): Show c.262+1359_262+1360insATATATATATATATTTTTTTTTTTTTTT TTTT	TOMM20L	ENSG00000196860.8	transcript	ENST00000360945.7	protein_coding	3/4		INFO_REALIGN_3_PRIME	chr14	TogoVar
TOMM22_chr22_38676957_38690421	38689912	C C	CTGTGTGT others(25): Show CTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG	downstream_gene_variant downstream_gene_variant	MODIFIER	NA18962.hp2 NA18962.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0003 a0001c0001t0003g0003	1	384	0.0026	32	c.60 others(43): Show c.6071_*6072insTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG	TOMM22	ENSG00000100216.6	transcript	ENST00000216034.6	protein_coding		4492		chr22	TogoVar
TOMM40_chr19_44886254_44908689	44905476	C C	CCCCCATA others(25): Show CCCCCATACAAAAACAACAAAAACAAAACAAAA	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00738.hp1 HG00738.hp1	a0001 a0001	a0001c0004 a0001c0004	a0001c0004t0001 a0001c0004t0001	a0001c0004t0001g0070 a0001c0004t0001g0070	1	412	0.0024	32	c.23 others(43): Show c.2307_*2308insCCCCATACAAAAACAACAAAAACAAAACAAAA	TOMM40	ENSG00000130204.13	transcript	ENST00000426677.7	protein_coding		1788		chr19	TogoVar
TOP1MT_chr8_143304324_143339880	143307118	C C	CGGCAGAG others(25): Show CGGCAGAGGAGAGGGCGGCAGAGGGTCCCGCAT	downstream_gene_variant downstream_gene_variant	MODIFIER	HG03209.hp2 HG03209.hp2	a0002 a0002	a0002c0034 a0002c0034	a0002c0034t0003 a0002c0034t0003	a0002c0034t0003g0044 a0002c0034t0003g0044	1	430	0.0023	32	c.23 others(43): Show c.2322_*2323insATGCGGGACCCTCTGCCGCCCTCTCCTCTGCC	TOP1MT	ENSG00000184428.13	transcript	ENST00000329245.9	protein_coding		2205		chr8	TogoVar
TOPAZ1_chr3_44236886_44337098	44298891	T T	TTATATAT others(25): Show TTATATATATATATATATATATATATATATATA	intron_variant intron_variant	MODIFIER	HG01928.hp1 HG01928.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0075 a0001c0001t0001g0075	1	258	0.0039	32	c.379 others(51): Show c.3798-5105_3798-5104insATATATATATATATATATATATATAT ATATAT	TOPAZ1	ENSG00000173769.4	transcript	ENST00000309765.4	protein_coding	12/19		INFO_REALIGN_3_PRIME	chr3	TogoVar
TOR1AIP1_chr1_179877285_179925076	179880038	A A	ATGTGTGT others(25): Show ATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02970.hp1 HG02970.hp1	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0001 a0001c0003t0001	a0001c0003t0001g0157 a0001c0003t0001g0157	1	290	0.0035	32	c.-24 others(43): Show c.-2465_-2464insTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG	TOR1AIP1	ENSG00000143337.19	transcript	ENST00000606911.7	protein_coding		2246		chr1	TogoVar
TOR1AIP1_chr1_179877285_179925076	179880042	A A	ATGTGTGT others(25): Show ATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG	upstream_gene_variant upstream_gene_variant	MODIFIER	NA18906.hp1 NA18906.hp1	a0004 a0004	a0004c0005 a0004c0005	a0004c0005t0004 a0004c0005t0004	a0004c0005t0004g0077 a0004c0005t0004g0077	1	290	0.0035	32	c.-24 others(43): Show c.-2461_-2460insTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG	TOR1AIP1	ENSG00000143337.19	transcript	ENST00000606911.7	protein_coding		2242		chr1	TogoVar
TOR1AIP2_chr1_179834976_179882803	179880038	A A	ATGTGTGT others(25): Show ATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02970.hp1 HG02970.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0028 a0001c0001t0028	a0001c0001t0028g0087 a0001c0001t0028g0087	1	280	0.0036	32	c.-30 others(43): Show c.-3047_-3046insCACACACACACACACACACACACACACACACA	TOR1AIP2	ENSG00000169905.13	transcript	ENST00000609928.6	protein_coding		2236		chr1	TogoVar
TOR1AIP2_chr1_179834976_179882803	179880042	A A	ATGTGTGT others(25): Show ATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG	upstream_gene_variant upstream_gene_variant	MODIFIER	NA18906.hp1 NA18906.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0011 a0001c0001t0011	a0001c0001t0011g0006 a0001c0001t0011g0006	1	280	0.0036	32	c.-30 others(43): Show c.-3051_-3050insCACACACACACACACACACACACACACACACA	TOR1AIP2	ENSG00000169905.13	transcript	ENST00000609928.6	protein_coding		2240		chr1	TogoVar
TOX2_chr20_43909852_44074616	43927659	C C	CCCTTCCT others(25): Show CCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTT	intron_variant intron_variant	MODIFIER	HG02976.hp1 HG03098.hp1 HG02976.hp1 HG03098.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0040 a0001c0001t0001g0242 a0001c0001t0001g0040 a0001c0001t0001g0242	2	288	0.0069	32	c.99+ others(49): Show c.99+12685_99+12686insCCTTCCTTCCTTCCTTCCTTCCTTCCTT CCTT	TOX2	ENSG00000124191.18	transcript	ENST00000341197.9	protein_coding	1/8		INFO_REALIGN_3_PRIME	chr20	TogoVar
TOX2_chr20_43909852_44074616	43951707	G G	GTTTTTTT others(25): Show GTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG02027.hp2 NA18949.hp1 NA19005.hp2 HG02027.hp2 NA18949.hp1 NA19005.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0041 a0001c0001t0001g0042 a0001c0001t0001g0074 a0001c0001t0001g0041 a0001c0001t0001g0042 a0001c0001t0001g0074	3	288	0.0104	32	c.100 others(51): Show c.100-21639_100-21638insTTTTTTTTTTTTTTTTTTTTTTTTTT TTTTTT	TOX2	ENSG00000124191.18	transcript	ENST00000341197.9	protein_coding	1/8		INFO_REALIGN_3_PRIME	chr20	TogoVar
TOX2_chr20_43909852_44074616	44026228	G G	GATATATA others(25): Show GATATATATATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG02056.hp2 HG02622.hp1 HG02622.hp2 others(2): Show HG02056.hp2 HG02622.hp1 HG02622.hp2 HG02922.hp1 HG02965.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0001 a0001c0001t0002	a0001c0001t0001g0068 a0001c0001t0001g0134 a0001c0001t0001g0225 others(2): Show a0001c0001t0001g0068 a0001c0001t0001g0134 a0001c0001t0001g0225 a0001c0001t0001g0266 a0001c0001t0002g0103	5	288	0.0174	32	c.411 others(51): Show c.411+19457_411+19458insTATATATATATATATATATATATATA TATATA	TOX2	ENSG00000124191.18	transcript	ENST00000341197.9	protein_coding	3/8		INFO_REALIGN_3_PRIME	chr20	TogoVar
TOX2_chr20_43909852_44074616	44026248	T T	TATATATA others(25): Show TATATATATATATATATACACACACACACACAC	intron_variant intron_variant	MODIFIER	NA18522.hp1 NA18522.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0147 a0001c0001t0002g0147	1	288	0.0035	32	c.411 others(51): Show c.411+19457_411+19458insTATATATATATATATACACACACACA CACACA	TOX2	ENSG00000124191.18	transcript	ENST00000341197.9	protein_coding	3/8		INFO_REALIGN_3_PRIME	chr20	TogoVar
TOX2_chr20_43909852_44074616	44048388	T T	TTATATAT others(25): Show TTATATATATATATATATATATATATATATATA	intron_variant intron_variant	MODIFIER	HG00741.hp2 HG01167.hp1 HG01515.hp2 others(2): Show HG00741.hp2 HG01167.hp1 HG01515.hp2 NA18974.hp2 NA19088.hp1	a0001 a0002 a0003 a0001 a0002 a0003	a0001c0001 a0001c0011 a0002c0002 others(1): Show a0001c0001 a0001c0011 a0002c0002 a0003c0003	a0001c0001t0001 a0001c0011t0001 a0002c0002t0002 others(1): Show a0001c0001t0001 a0001c0011t0001 a0002c0002t0002 a0003c0003t0001	a0001c0001t0001g0039 a0001c0001t0001g0061 a0001c0011t0001g0240 others(2): Show a0001c0001t0001g0039 a0001c0001t0001g0061 a0001c0011t0001g0240 a0002c0002t0002g0140 a0003c0003t0001g0003	5	288	0.0174	32	c.412 others(49): Show c.412-2893_412-2892insATATATATATATATATATATATATATAT ATAT	TOX2	ENSG00000124191.18	transcript	ENST00000341197.9	protein_coding	3/8		INFO_REALIGN_3_PRIME	chr20	TogoVar
TOX_chr8_58800412_59124147	58873958	C C	CTTTTTTT others(25): Show CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG01070.hp1 HG01070.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0169 a0001c0001t0003g0169	1	224	0.0045	32	c.412 others(51): Show c.412-22154_412-22153insAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAA	TOX	ENSG00000198846.6	transcript	ENST00000361421.2	protein_coding	3/8			chr8	TogoVar
TOX_chr8_58800412_59124147	59021481	A A	AAAAAATA others(25): Show AAAAAATATATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG02818.hp1 HG02818.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0011 a0001c0001t0002g0011	1	224	0.0045	32	c.103 others(51): Show c.103-61474_103-61473insATATATATATATATATATATATATAT ATTTTT	TOX	ENSG00000198846.6	transcript	ENST00000361421.2	protein_coding	1/8			chr8	TogoVar
TOX_chr8_58800412_59124147	59021499	T T	TATATATA others(25): Show TATATATATATATATATATATATATATATACAC	intron_variant intron_variant	MODIFIER	HG00423.hp1 HG03491.hp1 NA18960.hp1 others(1): Show HG00423.hp1 HG03491.hp1 NA18960.hp1 NA19085.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0001 a0001c0001t0002	a0001c0001t0001g0089 a0001c0001t0001g0106 a0001c0001t0002g0108 others(1): Show a0001c0001t0001g0089 a0001c0001t0001g0106 a0001c0001t0002g0108 a0001c0001t0002g0195	4	224	0.0179	32	c.103 others(51): Show c.103-61492_103-61491insGTGTATATATATATATATATATATAT ATATAT	TOX	ENSG00000198846.6	transcript	ENST00000361421.2	protein_coding	1/8			chr8	TogoVar
TP53AIP1_chr11_128930370_128947871	128930541	T T	TGGGGGTT others(25): Show TGGGGGTTAGGAAGGCCGGGGTTAGGGAGGCCA	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02630.hp2 HG02723.hp1 NA20129.hp1 HG02630.hp2 HG02723.hp1 NA20129.hp1	a0001 a0003 a0001 a0003	a0001c0001 a0003c0003 a0001c0001 a0003c0003	a0001c0001t0002 a0003c0003t0002 a0001c0001t0002 a0003c0003t0002	a0001c0001t0002g0081 a0001c0001t0002g0107 a0003c0003t0002g0111 a0001c0001t0002g0081 a0001c0001t0002g0107 a0003c0003t0002g0111	3	466	0.0064	32	c.50 others(43): Show c.5049_*5050insTGGCCTCCCTAACCCCGGCCTTCCTAACCCCC	TP53AIP1	ENSG00000120471.16	transcript	ENST00000531399.6	protein_coding		4828		chr11	TogoVar
TP53AIP1_chr11_128930370_128947871	128930541	T T	TGGGGGTT others(25): Show TGGGGGTTAGGAAGGCTGGGGTTAGGGAGGCCA	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02257.hp1 HG02258.hp1 HG02615.hp1 others(6): Show HG02257.hp1 HG02258.hp1 HG02615.hp1 HG02647.hp1 HG02818.hp2 HG03098.hp1 HG03516.hp2 HG03540.hp1 NA20300.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0002c0002 a0001c0001 a0002c0002	a0001c0001t0001 a0001c0001t0003 a0002c0002t0001 others(1): Show a0001c0001t0001 a0001c0001t0003 a0002c0002t0001 a0002c0002t0002	a0001c0001t0001g0001 a0001c0001t0001g0021 a0001c0001t0003g0016 others(5): Show a0001c0001t0001g0001 a0001c0001t0001g0021 a0001c0001t0003g0016 a0002c0002t0001g0003 a0002c0002t0001g0017 a0002c0002t0001g0140 a0002c0002t0002g0004 a0002c0002t0002g0023	9	466	0.0193	32	c.50 others(43): Show c.5049_*5050insTGGCCTCCCTAACCCCAGCCTTCCTAACCCCC	TP53AIP1	ENSG00000120471.16	transcript	ENST00000531399.6	protein_coding		4828		chr11	TogoVar

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