Joint Open Genome and Omics Platform (JoGo)

Search by Variant

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Chr

Chromosome name (e.g., chr11).

Snpeff genename

Exact SnpEff gene name.

Sampleids

Target sampleid (e.g. HG02615).

Snpeff haplotype class

Haplotype-annotation class (e.g., ahapid, ahapid+chapid).

Snpeff annotation impact

Exact impact level (e.g., HIGH, MODERATE, LOW).

Snpeff annotation impact detail

Keyword match in SnpEff annotation.

Hapid

One or more haplotype IDs (comma-separated; e.g., a0001, a01, a0001c0001, a01c02, a1c2, a0001c0001t0005, a0001c0001t0005g0018).

Samplehapid

Sample haplotype IDs to include (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

No_hapid

Haplotype IDs to exclude (comma-separated; e.g., a0001, a0002, a0001c0001, a0001c0001t0005, a1, a01).

No_samplehapid

Sample haplotype IDs to exclude (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

Start

Start position (GRCh38).

End

End position (GRCh38).

Minac

Minimum alternate allele count (≥).

Maxac

Maximum alternate allele count (≤).

Minlen

Minimum variant length (≥).

Maxlen

Maximum variant length (≤).

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⚠️ Results limited to 10,000 hits. Refine your search for more specific results.

regionname	pos	ref	alt	annotation	impact	samples	ahapids	achapids	acthapids	actghapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	external
FMN1_chr15_32760544_33199714	33048644	A A	AAAAAAAA others(25): Show AAAAAAAAAAAAAAAAAAAAAAAAAACAAAAAC	intron_variant intron_variant	MODIFIER	HG00735.hp1 HG01255.hp2 HG01361.hp1 others(6): Show HG00735.hp1 HG01255.hp2 HG01361.hp1 HG02040.hp1 HG02922.hp2 NA18956.hp2 NA19011.hp1 NA19030.hp1 NA20300.hp1	a0001 a0003 a0004 others(2): Show a0001 a0003 a0004 a0011 a0022	a0001c0001 a0001c0002 a0001c0073 others(5): Show a0001c0001 a0001c0002 a0001c0073 a0003c0007 a0004c0010 a0004c0027 a0011c0016 a0022c0024	a0001c0001t0001 a0001c0001t0085 a0001c0002t0076 others(6): Show a0001c0001t0001 a0001c0001t0085 a0001c0002t0076 a0001c0073t0001 a0003c0007t0049 a0004c0010t0008 a0004c0027t0011 a0011c0016t0001 a0022c0024t0005	a0001c0001t0001g0013 a0001c0001t0085g0165 a0001c0002t0076g0110 others(6): Show a0001c0001t0001g0013 a0001c0001t0085g0165 a0001c0002t0076g0110 a0001c0073t0001g0172 a0003c0007t0049g0084 a0004c0010t0008g0057 a0004c0027t0011g0111 a0011c0016t0001g0103 a0022c0024t0005g0062	9	196	0.0459	32	c.216 others(53): Show c.2161+16312_2161+16313insGTTTTTGTTTTTTTTTTTTTTTTT TTTTTTTT	FMN1	ENSG00000248905.10	transcript	ENST00000616417.5	protein_coding	6/20			chr15	TogoVar
FMN1_chr15_32760544_33199714	33048644	A A	AAAAAAAA others(25): Show AAAAAAAAAAAAAAAAAAAACAAAAACAAAAAC	intron_variant intron_variant	MODIFIER	NA19030.hp2 NA19030.hp2	a0005 a0005	a0005c0013 a0005c0013	a0005c0013t0064 a0005c0013t0064	a0005c0013t0064g0189 a0005c0013t0064g0189	1	196	0.0051	32	c.216 others(53): Show c.2161+16312_2161+16313insGTTTTTGTTTTTGTTTTTTTTTTT TTTTTTTT	FMN1	ENSG00000248905.10	transcript	ENST00000616417.5	protein_coding	6/20			chr15	TogoVar
FMN1_chr15_32760544_33199714	33048644	A A	AAAAACAA others(25): Show AAAAACAAAAAAAAAAAAAACAAAAACAAAAAC	intron_variant intron_variant	MODIFIER	NA18991.hp2 NA18991.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0065 a0001c0001t0002g0065	1	196	0.0051	32	c.216 others(53): Show c.2161+16312_2161+16313insGTTTTTGTTTTTGTTTTTTTTTTT TTTGTTTT	FMN1	ENSG00000248905.10	transcript	ENST00000616417.5	protein_coding	6/20			chr15	TogoVar
FMN2_chr1_240086883_240480187	240142475	A A	ATATTTAT others(25): Show ATATTTATTTATTTATTTATTTATTTATTTATT	intron_variant intron_variant	MODIFIER	HG00741.hp2 HG00741.hp2	a0006 a0006	a0006c0077 a0006c0077	a0006c0077t0004 a0006c0077t0004	a0006c0077t0004g0096 a0006c0077t0004g0096	1	174	0.0058	32	c.178 others(53): Show c.1782+19153_1782+19154insTTATTTATTTATTTATTTATTTAT TTATTTAT	FMN2	ENSG00000155816.21	transcript	ENST00000319653.14	protein_coding	2/17		INFO_REALIGN_3_PRIME	chr1	TogoVar
FMN2_chr1_240086883_240480187	240228303	C C	CAAAAAAA others(25): Show CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG03831.hp1 HG03831.hp1	a0001 a0001	a0001c0017 a0001c0017	a0001c0017t0004 a0001c0017t0004	a0001c0017t0004g0068 a0001c0017t0004g0068	1	174	0.0058	32	c.406 others(53): Show c.4065+17097_4065+17098insAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAA	FMN2	ENSG00000155816.21	transcript	ENST00000319653.14	protein_coding	6/17		INFO_REALIGN_3_PRIME	chr1	TogoVar
FMN2_chr1_240086883_240480187	240252953	C C	CTTTTTTT others(25): Show CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	NA18952.hp1 NA19043.hp2 NA18952.hp1 NA19043.hp2	a0084 a0087 a0084 a0087	a0084c0054 a0087c0044 a0084c0054 a0087c0044	a0084c0054t0003 a0087c0044t0001 a0084c0054t0003 a0087c0044t0001	a0084c0054t0003g0027 a0087c0044t0001g0012 a0084c0054t0003g0027 a0087c0044t0001g0012	2	174	0.0115	32	c.406 others(51): Show c.4066-4975_4066-4974insTTTTTTTTTTTTTTTTTTTTTTTTTT TTTTTT	FMN2	ENSG00000155816.21	transcript	ENST00000319653.14	protein_coding	6/17		INFO_REALIGN_3_PRIME	chr1	TogoVar
FMNL2_chr2_152330174_152654826	152589987	A A	ATATGTAT others(25): Show ATATGTATATGTATGTATATGTATATGTATATG	intron_variant intron_variant	MODIFIER	HG02165.hp1 HG02165.hp2 HG03540.hp1 HG02165.hp1 HG02165.hp2 HG03540.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0002c0007 a0001c0001 a0002c0007	a0001c0001t0002 a0001c0001t0003 a0002c0007t0002 a0001c0001t0002 a0001c0001t0003 a0002c0007t0002	a0001c0001t0002g0014 a0001c0001t0003g0012 a0002c0007t0002g0127 a0001c0001t0002g0014 a0001c0001t0003g0012 a0002c0007t0002g0127	3	200	0.0150	32	c.876 others(49): Show c.876+8951_876+8952insGTATATGTATATGTATATGTATGTATAT GTAT	FMNL2	ENSG00000157827.20	transcript	ENST00000288670.14	protein_coding	9/25		INFO_REALIGN_3_PRIME	chr2	TogoVar
FN3K_chr17_82730615_82756196	82746136	G G	GTTGCACC others(25): Show GTTGCACCATGTTGCATTCCCACCAGCAGCATA	intron_variant intron_variant	MODIFIER	HG01099.hp1 HG01099.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0164 a0001c0001t0001g0164	1	402	0.0025	32	c.469 others(49): Show c.469-2717_469-2686dupTGCACCATGTTGCATTCCCACCAGCAGC ATAT	FN3K	ENSG00000167363.14	transcript	ENST00000300784.8	protein_coding	4/5		INFO_REALIGN_3_PRIME	chr17	TogoVar
FNDC3A_chr13_48970912_49214779	49061743	C C	CCCTCTCC others(25): Show CCCTCTCCTCTCCCTCTCCTCTCCTCTCCCTCT	intron_variant intron_variant	MODIFIER	HG02630.hp1 HG03195.hp1 NA19043.hp2 HG02630.hp1 HG03195.hp1 NA19043.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0215 a0001c0001t0001g0216 a0001c0001t0001g0242 a0001c0001t0001g0215 a0001c0001t0001g0216 a0001c0001t0001g0242	3	292	0.0103	32	c.100 others(51): Show c.100-13519_100-13488dupCCCTCTCCTCTCCTCTCCCTCTCCTC TCCTCT	FNDC3A	ENSG00000102531.16	transcript	ENST00000492622.6	protein_coding	2/25		INFO_REALIGN_3_PRIME	chr13	TogoVar
FNDC3B_chr3_172034578_172406669	172181395	C C	CAAAAAAA others(25): Show CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG02976.hp1 HG02976.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0009 a0001c0001t0009	a0001c0001t0009g0086 a0001c0001t0009g0086	1	196	0.0051	32	c.188 others(51): Show c.188-45457_188-45456insAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAA	FNDC3B	ENSG00000075420.13	transcript	ENST00000415807.7	protein_coding	3/25		INFO_REALIGN_3_PRIME	chr3	TogoVar
FNDC3B_chr3_172034578_172406669	172183769	G G	GCTTCCCT others(25): Show GCTTCCCTTCCACTCTGGAAATGGAAGGTTTGA	intron_variant intron_variant	MODIFIER	HG03710.hp1 HG03710.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0077 a0001c0001t0002g0077	1	196	0.0051	32	c.188 others(51): Show c.188-43100_188-43069dupTTCCCTTCCACTCTGGAAATGGAAGG TTTGAC	FNDC3B	ENSG00000075420.13	transcript	ENST00000415807.7	protein_coding	3/25		INFO_REALIGN_3_PRIME	chr3	TogoVar
FNDC3B_chr3_172034578_172406669	172193224	T T	TCCTCCTC others(25): Show TCCTCCTCCCCTCCTCCCCTCCTCCCCTCCTCC	intron_variant intron_variant	MODIFIER	HG01256.hp1 HG02451.hp1 HG03486.hp2 HG01256.hp1 HG02451.hp1 HG03486.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0001c0007 a0002c0004 a0001c0001 a0001c0007 a0002c0004	a0001c0001t0024 a0001c0007t0013 a0002c0004t0001 a0001c0001t0024 a0001c0007t0013 a0002c0004t0001	a0001c0001t0024g0195 a0001c0007t0013g0188 a0002c0004t0001g0071 a0001c0001t0024g0195 a0001c0007t0013g0188 a0002c0004t0001g0071	3	196	0.0153	32	c.188 others(51): Show c.188-33644_188-33613dupTCCTCCCCTCCTCCCCTCCTCCCCTC CTCCCC	FNDC3B	ENSG00000075420.13	transcript	ENST00000415807.7	protein_coding	3/25		INFO_REALIGN_3_PRIME	chr3	TogoVar
FNIP1_chr5_131636714_131802017	131785081	T T	TATATATA others(25): Show TATATATATGATATATATGACTATATATATATC	intron_variant intron_variant	MODIFIER	NA18939.hp2 NA18962.hp2 NA18939.hp2 NA18962.hp2	a0002 a0007 a0002 a0007	a0002c0002 a0007c0012 a0002c0002 a0007c0012	a0002c0002t0004 a0007c0012t0005 a0002c0002t0004 a0007c0012t0005	a0002c0002t0004g0162 a0007c0012t0005g0117 a0002c0002t0004g0162 a0007c0012t0005g0117	2	328	0.0061	32	c.92+ others(49): Show c.92+11717_92+11748dupGATATATATATAGTCATATATATCATAT ATAT	FNIP1	ENSG00000217128.13	transcript	ENST00000510461.6	protein_coding	1/17			chr5	TogoVar
FNIP1_chr5_131636714_131802017	131785144	G G	GTCATATA others(25): Show GTCATATATATGATATATATGACTATATATATA	intron_variant intron_variant	MODIFIER	NA18942.hp2 NA19074.hp2 NA18942.hp2 NA19074.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0004 a0002c0002t0004	a0002c0002t0004g0119 a0002c0002t0004g0160 a0002c0002t0004g0119 a0002c0002t0004g0160	2	328	0.0061	32	c.92+ others(49): Show c.92+11654_92+11685dupTATATATATAGTCATATATATCATATAT ATGA	FNIP1	ENSG00000217128.13	transcript	ENST00000510461.6	protein_coding	1/17			chr5	TogoVar
FNIP2_chr4_158764026_158913050	158875515	G G	GATATATA others(25): Show GATATATATATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG01169.hp2 HG02717.hp1 HG02976.hp2 HG01169.hp2 HG02717.hp1 HG02976.hp2	a0001 a0002 a0003 a0001 a0002 a0003	a0001c0001 a0002c0002 a0003c0004 a0001c0001 a0002c0002 a0003c0004	a0001c0001t0005 a0002c0002t0003 a0003c0004t0001 a0001c0001t0005 a0002c0002t0003 a0003c0004t0001	a0001c0001t0005g0010 a0002c0002t0003g0201 a0003c0004t0001g0054 a0001c0001t0005g0010 a0002c0002t0003g0201 a0003c0004t0001g0054	3	254	0.0118	32	c.294 others(51): Show c.2949+5072_2949+5073insATATATATATATATATATATATATAT ATATAT	FNIP2	ENSG00000052795.13	transcript	ENST00000264433.11	protein_coding	14/16		INFO_REALIGN_3_PRIME	chr4	TogoVar
FNIP2_chr4_158764026_158913050	158875541	T T	TATATATA others(25): Show TATATATATATATATATATATATATATATATGC	intron_variant intron_variant	MODIFIER	HG01884.hp2 HG01884.hp2	a0001 a0001	a0001c0009 a0001c0009	a0001c0009t0002 a0001c0009t0002	a0001c0009t0002g0234 a0001c0009t0002g0234	1	254	0.0039	32	c.294 others(51): Show c.2949+5072_2949+5073insATATATATATATATATATATATATAT ATATGC	FNIP2	ENSG00000052795.13	transcript	ENST00000264433.11	protein_coding	14/16			chr4	TogoVar
FOCAD_chr9_20679259_21000950	20714604	T T	TTGCCTGC others(25): Show TTGCCTGCCTGCCTGCCTGCCTGCCTGCCTGCC	intron_variant intron_variant	MODIFIER	HG02257.hp2 NA18522.hp1 HG02257.hp2 NA18522.hp1	a0006 a0006	a0006c0005 a0006c0005	a0006c0005t0001 a0006c0005t0001	a0006c0005t0001g0175 a0006c0005t0001g0193 a0006c0005t0001g0175 a0006c0005t0001g0193	2	320	0.0063	32	c.-32 others(47): Show c.-32-716_-32-685dupGCCTGCCTGCCTGCCTGCCTGCCTGCCTGC CT	FOCAD	ENSG00000188352.13	transcript	ENST00000338382.11	protein_coding	1/43		INFO_REALIGN_3_PRIME	chr9	TogoVar
FOCAD_chr9_20679259_21000950	20986266	A A	ATTTTTTT others(25): Show ATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	splice_region_variant others(1): Show splice_region_variant intron_variant	LOW	HG00558.hp2 HG02074.hp2 HG02132.hp2 others(2): Show HG00558.hp2 HG02074.hp2 HG02132.hp2 HG02258.hp1 NA19062.hp1	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0001 a0002c0002t0001	a0002c0002t0001g0015 a0002c0002t0001g0233 a0002c0002t0001g0256 others(2): Show a0002c0002t0001g0015 a0002c0002t0001g0233 a0002c0002t0001g0256 a0002c0002t0001g0257 a0002c0002t0001g0282	5	320	0.0156	32	c.472 others(45): Show c.4729-5_4729-4insTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	FOCAD	ENSG00000188352.13	transcript	ENST00000338382.11	protein_coding	39/43		INFO_REALIGN_3_PRIME	chr9	TogoVar
FOLR1_chr11_72187140_72201299	72201178	A A	ATACACGT others(25): Show ATACACGTATACACGTATACACGTATACGTATG	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00738.hp1 HG02027.hp1 HG02622.hp2 others(6): Show HG00738.hp1 HG02027.hp1 HG02622.hp2 HG02738.hp1 HG02738.hp2 HG03225.hp2 NA18954.hp1 NA18982.hp2 NA20805.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0001 a0001c0001t0001g0002 a0001c0001t0001g0001 a0001c0001t0001g0002	9	412	0.0218	32	c.50 others(43): Show c.5001_*5002insTACACGTATACACGTATACACGTATACGTATG	FOLR1	ENSG00000110195.14	transcript	ENST00000393676.5	protein_coding		4880		chr11	TogoVar
FOLR1_chr11_72187140_72201299	72201178	A A	ATACGTAT others(25): Show ATACGTATGTACACGTATACACGTATACGTATG	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02896.hp2 HG03239.hp2 NA19011.hp1 HG02896.hp2 HG03239.hp2 NA19011.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0002 a0001c0001t0001g0005 a0001c0001t0001g0030 a0001c0001t0001g0002 a0001c0001t0001g0005 a0001c0001t0001g0030	3	412	0.0073	32	c.50 others(43): Show c.5001_*5002insTACGTATGTACACGTATACACGTATACGTATG	FOLR1	ENSG00000110195.14	transcript	ENST00000393676.5	protein_coding		4880		chr11	TogoVar
FOSL2_chr2_28387858_28422317	28396813	C C	CACACACA others(25): Show CACACACACACACACACACACACACACACACAA	intron_variant intron_variant	MODIFIER	HG03540.hp1 NA20300.hp1 HG03540.hp1 NA20300.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0005 a0001c0001t0005	a0001c0001t0005g0206 a0001c0001t0005g0249 a0001c0001t0005g0206 a0001c0001t0005g0249	2	364	0.0055	32	c.102 others(49): Show c.102+3016_102+3017insCACACAAACACACACACACACACACACA CACA	FOSL2	ENSG00000075426.12	transcript	ENST00000264716.9	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr2	TogoVar
FOXI1_chr5_170100897_170114734	170105348	G G	GGAGAGGG others(25): Show GGAGAGGGGGGGGGGGGGGGAGAGAGAGAGAGA	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01071.hp1 NA19085.hp2 HG01071.hp1 NA19085.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0002 a0001c0002t0002	a0001c0002t0002g0002 a0001c0002t0002g0004 a0001c0002t0002g0002 a0001c0002t0002g0004	2	412	0.0049	32	c.-61 others(41): Show c.-610_-609insGAGAGGGGGGGGGGGGGGGAGAGAGAGAGAGA	FOXI1	ENSG00000168269.10	transcript	ENST00000306268.8	protein_coding		548		chr5	TogoVar
FOXI1_chr5_170100897_170114734	170105348	G G	GGAGGGGG others(25): Show GGAGGGGGGGGGGGGGGGAGAGAGAGAGAGAGA	upstream_gene_variant upstream_gene_variant	MODIFIER	HG03017.hp2 HG03017.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0002 a0001c0002t0002	a0001c0002t0002g0002 a0001c0002t0002g0002	1	412	0.0024	32	c.-61 others(41): Show c.-610_-609insGAGGGGGGGGGGGGGGGAGAGAGAGAGAGAGA	FOXI1	ENSG00000168269.10	transcript	ENST00000306268.8	protein_coding		548		chr5	TogoVar
FOXI1_chr5_170100897_170114734	170105356	G G	GGGGGGGG others(25): Show GGGGGGGGGGAGAGAGAGAGAGAGAGAGAGAGA	upstream_gene_variant upstream_gene_variant	MODIFIER	NA18612.hp1 NA18612.hp2 NA18612.hp1 NA18612.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0002 a0001c0002t0002	a0001c0002t0002g0004 a0001c0002t0002g0004	2	412	0.0049	32	c.-60 others(41): Show c.-602_-601insGGGGGGGGGAGAGAGAGAGAGAGAGAGAGAGA	FOXI1	ENSG00000168269.10	transcript	ENST00000306268.8	protein_coding		540		chr5	TogoVar
FOXI1_chr5_170100897_170114734	170105356	G G	GGGGGGGG others(25): Show GGGGGGGGGGGGAGAGAGAGAGAGAGAGAGAGA	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00597.hp1 NA19063.hp2 HG00597.hp1 NA19063.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0002 a0001c0002t0002	a0001c0002t0002g0004 a0001c0002t0002g0004	2	412	0.0049	32	c.-60 others(41): Show c.-602_-601insGGGGGGGGGGGAGAGAGAGAGAGAGAGAGAGA	FOXI1	ENSG00000168269.10	transcript	ENST00000306268.8	protein_coding		540		chr5	TogoVar
FOXI1_chr5_170100897_170114734	170105356	G G	GGGGGGGG others(25): Show GGGGGGGGGGGGGGAGAGAGAGAGAGAGAGAGA	upstream_gene_variant upstream_gene_variant	MODIFIER	NA19086.hp2 NA19086.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0002 a0001c0002t0002	a0001c0002t0002g0004 a0001c0002t0002g0004	1	412	0.0024	32	c.-60 others(41): Show c.-602_-601insGGGGGGGGGGGGGAGAGAGAGAGAGAGAGAGA	FOXI1	ENSG00000168269.10	transcript	ENST00000306268.8	protein_coding		540		chr5	TogoVar
FOXI1_chr5_170100897_170114734	170105368	G G	GGAGAGAG others(25): Show GGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00099.hp2 HG01109.hp2 HG01261.hp1 others(10): Show HG00099.hp2 HG01109.hp2 HG01261.hp1 HG01358.hp2 HG01517.hp2 HG01975.hp1 HG01978.hp1 HG02040.hp2 HG02074.hp2 HG02129.hp2 NA18970.hp1 NA18991.hp1 NA20752.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0001 a0001c0001t0001g0003 a0001c0001t0001g0001 a0001c0001t0001g0003	13	412	0.0316	32	c.-59 others(41): Show c.-590_-589insGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA	FOXI1	ENSG00000168269.10	transcript	ENST00000306268.8	protein_coding		528		chr5	TogoVar
FOXI1_chr5_170100897_170114734	170105370	G G	GGAGAGAG others(25): Show GGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02723.hp1 NA18747.hp1 NA18969.hp2 others(4): Show HG02723.hp1 NA18747.hp1 NA18969.hp2 NA19004.hp2 NA19065.hp1 NA19081.hp2 NA19084.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0006 a0001c0001t0001 a0001c0001t0006	a0001c0001t0001g0001 a0001c0001t0001g0008 a0001c0001t0006g0005 a0001c0001t0001g0001 a0001c0001t0001g0008 a0001c0001t0006g0005	7	412	0.0170	32	c.-58 others(41): Show c.-588_-587insGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA	FOXI1	ENSG00000168269.10	transcript	ENST00000306268.8	protein_coding		526		chr5	TogoVar
FOXN3_chr14_89151177_89422233	89191973	T T	TATATATA others(25): Show TATATATATATATATATACATATATATATAAAA	intron_variant intron_variant	MODIFIER	HG02809.hp1 HG02818.hp1 HG02922.hp2 HG02809.hp1 HG02818.hp1 HG02922.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0016 a0001c0001t0001 a0001c0001t0002 a0001c0001t0016	a0001c0001t0001g0225 a0001c0001t0002g0044 a0001c0001t0016g0162 a0001c0001t0001g0225 a0001c0001t0002g0044 a0001c0001t0016g0162	3	230	0.0130	32	c.746 others(51): Show c.746-11168_746-11167insTTTTATATATATATGTATATATATAT ATATAT	FOXN3	ENSG00000053254.16	transcript	ENST00000557258.6	protein_coding	4/5			chr14	TogoVar
FOXN4_chr12_109272978_109314284	109304221	G G	GAGAAAGA others(25): Show GAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA	intron_variant intron_variant	MODIFIER	NA18979.hp2 NA18979.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0002 a0001c0002t0002	a0001c0002t0002g0225 a0001c0002t0002g0225	1	368	0.0027	32	c.86+ others(47): Show c.86+3983_86+4014dupTTCTTTCTTTCTTTCTTTCTTTCTTTCTTT CT	FOXN4	ENSG00000139445.18	transcript	ENST00000299162.10	protein_coding	2/9			chr12	TogoVar
FOXP1_chr3_70949708_71588728	71085735	C C	CTTTTTTT others(25): Show CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG03098.hp2 HG03098.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0079 a0001c0001t0079	a0001c0001t0079g0014 a0001c0001t0079g0014	1	96	0.0104	32	c.282 others(51): Show c.282+26800_282+26801insAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAA	FOXP1	ENSG00000114861.24	transcript	ENST00000649528.3	protein_coding	7/20			chr3	TogoVar
FOXP1_chr3_70949708_71588728	71091129	G G	GTGTGTGT others(25): Show GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTA	intron_variant intron_variant	MODIFIER	HG02145.hp2 HG02145.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0080 a0001c0001t0080	a0001c0001t0080g0075 a0001c0001t0080g0075	1	96	0.0104	32	c.282 others(51): Show c.282+21406_282+21407insTACACACACACACACACACACACACA CACACA	FOXP1	ENSG00000114861.24	transcript	ENST00000649528.3	protein_coding	7/20			chr3	TogoVar
FOXP1_chr3_70949708_71588728	71158105	A A	AAGGAAGG others(25): Show AAGGAAGGAAGGAAGGAAGGAAGGAAGGGAGGG	intron_variant intron_variant	MODIFIER	HG01109.hp2 HG01516.hp2 HG02055.hp1 others(6): Show HG01109.hp2 HG01516.hp2 HG02055.hp1 HG03209.hp2 HG03239.hp1 HG03239.hp2 HG03704.hp1 HG03704.hp2 HG04199.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0008 a0001c0001t0019 others(6): Show a0001c0001t0003 a0001c0001t0008 a0001c0001t0019 a0001c0001t0048 a0001c0001t0050 a0001c0001t0053 a0001c0001t0056 a0001c0001t0069 a0001c0001t0078	a0001c0001t0003g0086 a0001c0001t0008g0036 a0001c0001t0019g0088 others(6): Show a0001c0001t0003g0086 a0001c0001t0008g0036 a0001c0001t0019g0088 a0001c0001t0048g0031 a0001c0001t0050g0095 a0001c0001t0053g0074 a0001c0001t0056g0093 a0001c0001t0069g0027 a0001c0001t0078g0028	9	96	0.0938	32	c.180 others(51): Show c.180+40096_180+40097insCCCTCCCTTCCTTCCTTCCTTCCTTC CTTCCT	FOXP1	ENSG00000114861.24	transcript	ENST00000649528.3	protein_coding	6/20			chr3	TogoVar
FOXP1_chr3_70949708_71588728	71406403	G G	GTATATAT others(25): Show GTATATATATATATATATATATATATATATATA	intron_variant intron_variant	MODIFIER	HG01516.hp1 HG01516.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0008 a0001c0001t0008	a0001c0001t0008g0039 a0001c0001t0008g0039	1	96	0.0104	32	c.-16 others(53): Show c.-167-47160_-167-47159insTATATATATATATATATATATATA TATATATA	FOXP1	ENSG00000114861.24	transcript	ENST00000649528.3	protein_coding	3/20			chr3	TogoVar
FOXP1_chr3_70949708_71588728	71406403	G G	GTATGTAT others(25): Show GTATGTATATATATATATATATATATATATATA	intron_variant intron_variant	MODIFIER	HG03041.hp1 HG03239.hp1 HG03540.hp2 HG03041.hp1 HG03239.hp1 HG03540.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0031 a0001c0001t0044 a0001c0001t0056 a0001c0001t0031 a0001c0001t0044 a0001c0001t0056	a0001c0001t0031g0079 a0001c0001t0044g0078 a0001c0001t0056g0093 a0001c0001t0031g0079 a0001c0001t0044g0078 a0001c0001t0056g0093	3	96	0.0313	32	c.-16 others(53): Show c.-167-47160_-167-47159insTATATATATATATATATATATATA TATACATA	FOXP1	ENSG00000114861.24	transcript	ENST00000649528.3	protein_coding	3/20			chr3	TogoVar
FOXP1_chr3_70949708_71588728	71406403	G G	GTATGTGT others(25): Show GTATGTGTATATATATATATATATATATATATA	intron_variant intron_variant	MODIFIER	NA20129.hp2 NA20129.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0057 a0001c0001t0057	a0001c0001t0057g0048 a0001c0001t0057g0048	1	96	0.0104	32	c.-16 others(53): Show c.-167-47160_-167-47159insTATATATATATATATATATATATA TACACATA	FOXP1	ENSG00000114861.24	transcript	ENST00000649528.3	protein_coding	3/20			chr3	TogoVar
FOXP1_chr3_70949708_71588728	71435251	A A	AGAGGGAC others(25): Show AGAGGGACGGAGGGAGGGAAGGAGGGACGGAGG	intron_variant intron_variant	MODIFIER	HG03453.hp1 NA18906.hp2 HG03453.hp1 NA18906.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0016 a0001c0001t0022 a0001c0001t0016 a0001c0001t0022	a0001c0001t0016g0041 a0001c0001t0022g0047 a0001c0001t0016g0041 a0001c0001t0022g0047	2	96	0.0208	32	c.-16 others(53): Show c.-168+58174_-168+58175insCCTCCGTCCCTCCTTCCCTCCCTC CGTCCCTC	FOXP1	ENSG00000114861.24	transcript	ENST00000649528.3	protein_coding	3/20			chr3	TogoVar
FOXP1_chr3_70949708_71588728	71496961	A A	AGTGTGTG others(25): Show AGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT	intron_variant intron_variant	MODIFIER	HG02622.hp2 HG02622.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0083 a0001c0001t0083	a0001c0001t0083g0020 a0001c0001t0083g0020	1	96	0.0104	32	c.-29 others(51): Show c.-297-3407_-297-3406insACACACACACACACACACACACACAC ACACAC	FOXP1	ENSG00000114861.24	transcript	ENST00000649528.3	protein_coding	2/20			chr3	TogoVar
FOXQ1_chr6_1307098_1319758	1317106	C C	CCCCTCCC others(25): Show CCCCTCCCCCCACCCATTCCCTCCTCCAGCCTA	downstream_gene_variant downstream_gene_variant	MODIFIER	NA18994.hp2 NA18994.hp2	a0004 a0004	a0004c0006 a0004c0006	a0004c0006t0001 a0004c0006t0001	a0004c0006t0001g0000 a0004c0006t0001g0000	1	406	0.0025	32	c.31 others(43): Show c.3190_*3191insCCCTCCCCCCACCCATTCCCTCCTCCAGCCTA	FOXQ1	ENSG00000164379.7	transcript	ENST00000296839.5	protein_coding		2349		chr6	TogoVar
FRAS1_chr4_78052323_78549269	78065081	T T	TATATATA others(25): Show TATATATATATATATATATATATATACACACAC	intron_variant intron_variant	MODIFIER	NA18941.hp2 NA18941.hp2	a0005 a0005	a0005c0019 a0005c0019	a0005c0019t0003 a0005c0019t0003	a0005c0019t0003g0080 a0005c0019t0003g0080	1	178	0.0056	32	c.77- others(45): Show c.77-901_77-900insTATATATATATATATATATATACACACACATA	FRAS1	ENSG00000138759.20	transcript	ENST00000512123.4	protein_coding	1/73		INFO_REALIGN_3_PRIME	chr4	TogoVar
FRAS1_chr4_78052323_78549269	78200875	A A	ATATATAT others(25): Show ATATATATATATATATGTATATATATAAATACG	intron_variant intron_variant	MODIFIER	HG02622.hp1 HG02622.hp1	a0075 a0075	a0075c0088 a0075c0088	a0075c0088t0030 a0075c0088t0030	a0075c0088t0030g0170 a0075c0088t0030g0170	1	178	0.0056	32	c.109 others(51): Show c.109-36624_109-36623insATATGTATATATATAAATACGTATAT ATATAT	FRAS1	ENSG00000138759.20	transcript	ENST00000512123.4	protein_coding	2/73		INFO_REALIGN_3_PRIME	chr4	TogoVar
FRAS1_chr4_78052323_78549269	78217942	T T	TCTCTTCC others(25): Show TCTCTTCCCCTCCCCCTCTCCTCTCTTCCCCTC	intron_variant intron_variant	MODIFIER	HG02055.hp1 HG02055.hp1	a0102 a0102	a0102c0075 a0102c0075	a0102c0075t0021 a0102c0075t0021	a0102c0075t0021g0134 a0102c0075t0021g0134	1	178	0.0056	32	c.109 others(51): Show c.109-19567_109-19566insTCTTCCCCTCCCCCTCTCCTCTCTTC CCCTCC	FRAS1	ENSG00000138759.20	transcript	ENST00000512123.4	protein_coding	2/73		INFO_REALIGN_3_PRIME	chr4	TogoVar
FRAS1_chr4_78052323_78549269	78249064	C C	CATATATA others(25): Show CATATATATATATATATGCATATATATATATAT	intron_variant intron_variant	MODIFIER	NA19070.hp2 NA19070.hp2	a0035 a0035	a0035c0034 a0035c0034	a0035c0034t0003 a0035c0034t0003	a0035c0034t0003g0014 a0035c0034t0003g0014	1	178	0.0056	32	c.310 others(49): Show c.310-3312_310-3311insGCATATATATATATATATATATATATAT ATAT	FRAS1	ENSG00000138759.20	transcript	ENST00000512123.4	protein_coding	4/73		INFO_REALIGN_3_PRIME	chr4	TogoVar
FREM1_chr9_14732152_14915428	14847400	A A	AGAAGGAA others(25): Show AGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAG	intron_variant intron_variant	MODIFIER	HG00408.hp2 HG00642.hp1 HG00735.hp2 others(16): Show HG00408.hp2 HG00642.hp1 HG00735.hp2 HG01071.hp1 HG01081.hp1 HG01175.hp2 HG02698.hp1 HG02809.hp1 HG03490.hp1 HG03492.hp1 HG03492.hp2 HG03831.hp1 HG03831.hp2 NA18941.hp2 NA18950.hp2 NA18967.hp1 NA18972.hp1 NA19060.hp2 NA20752.hp2	a0003 a0004 a0005 others(12): Show a0003 a0004 a0005 a0006 a0009 a0010 a0011 a0015 a0017 a0035 a0040 a0046 a0048 a0063 a0112	a0003c0003 a0004c0031 a0005c0013 others(13): Show a0003c0003 a0004c0031 a0005c0013 a0006c0080 a0009c0035 a0009c0103 a0010c0025 a0011c0012 a0015c0010 a0017c0019 a0035c0131 a0040c0136 a0046c0065 a0048c0078 a0063c0108 a0112c0141	a0003c0003t0001 a0004c0031t0001 a0005c0013t0002 others(13): Show a0003c0003t0001 a0004c0031t0001 a0005c0013t0002 a0006c0080t0001 a0009c0035t0001 a0009c0103t0001 a0010c0025t0001 a0011c0012t0001 a0015c0010t0001 a0017c0019t0001 a0035c0131t0001 a0040c0136t0001 a0046c0065t0001 a0048c0078t0001 a0063c0108t0001 a0112c0141t0001	a0003c0003t0001g0155 a0003c0003t0001g0156 a0003c0003t0001g0299 others(16): Show a0003c0003t0001g0155 a0003c0003t0001g0156 a0003c0003t0001g0299 a0004c0031t0001g0132 a0005c0013t0002g0314 a0006c0080t0001g0316 a0009c0035t0001g0222 a0009c0103t0001g0285 a0010c0025t0001g0297 a0011c0012t0001g0281 a0015c0010t0001g0028 a0017c0019t0001g0142 a0017c0019t0001g0143 a0035c0131t0001g0247 a0040c0136t0001g0093 a0046c0065t0001g0180 a0048c0078t0001g0116 a0063c0108t0001g0315 a0112c0141t0001g0229	19	346	0.0549	32	c.126 others(51): Show c.1261+1264_1261+1265insCTTCCTTCCTTCCTTCCTTCCTTCCT TCCTTC	FREM1	ENSG00000164946.20	transcript	ENST00000380880.4	protein_coding	7/36			chr9	TogoVar
FREM1_chr9_14732152_14915428	14847426	A A	AAGGAAGG others(25): Show AAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGG	intron_variant intron_variant	MODIFIER	NA20129.hp1 NA20129.hp1	a0025 a0025	a0025c0046 a0025c0046	a0025c0046t0006 a0025c0046t0006	a0025c0046t0006g0237 a0025c0046t0006g0237	1	346	0.0029	32	c.126 others(51): Show c.1261+1238_1261+1239insCCCTTCCTTCCTTCCTTCCTTCCTTC CTTCCT	FREM1	ENSG00000164946.20	transcript	ENST00000380880.4	protein_coding	7/36			chr9	TogoVar
FREM1_chr9_14732152_14915428	14860568	T T	TATACACA others(25): Show TATACACATATATATATACACATATATATATAC	intron_variant intron_variant	MODIFIER	HG00733.hp1 HG01106.hp2 HG01167.hp2 others(15): Show HG00733.hp1 HG01106.hp2 HG01167.hp2 HG01169.hp2 HG01261.hp1 HG01261.hp2 HG01346.hp1 HG01358.hp1 HG01358.hp2 HG01433.hp1 HG01496.hp1 HG01934.hp1 HG01952.hp2 HG01975.hp1 HG02300.hp2 HG03669.hp1 NA20129.hp2 NA20752.hp1	a0001 a0002 a0011 others(7): Show a0001 a0002 a0011 a0012 a0014 a0029 a0030 a0041 a0088 a0119	a0001c0040 a0002c0005 a0002c0021 others(10): Show a0001c0040 a0002c0005 a0002c0021 a0011c0012 a0012c0038 a0012c0116 a0014c0026 a0014c0070 a0029c0037 a0030c0020 a0041c0115 a0088c0134 a0119c0228	a0001c0040t0001 a0002c0005t0001 a0002c0021t0001 others(10): Show a0001c0040t0001 a0002c0005t0001 a0002c0021t0001 a0011c0012t0001 a0012c0038t0001 a0012c0116t0001 a0014c0026t0001 a0014c0070t0001 a0029c0037t0001 a0030c0020t0001 a0041c0115t0001 a0088c0134t0001 a0119c0228t0001	a0001c0040t0001g0125 a0002c0005t0001g0252 a0002c0005t0001g0264 others(15): Show a0001c0040t0001g0125 a0002c0005t0001g0252 a0002c0005t0001g0264 a0002c0021t0001g0138 a0002c0021t0001g0144 a0002c0021t0001g0226 a0011c0012t0001g0062 a0011c0012t0001g0301 a0012c0038t0001g0310 a0012c0116t0001g0068 a0014c0026t0001g0176 a0014c0070t0001g0159 a0029c0037t0001g0292 a0030c0020t0001g0189 a0030c0020t0001g0201 a0041c0115t0001g0250 a0088c0134t0001g0190 a0119c0228t0001g0133	18	346	0.0520	32	c.330 others(49): Show c.330-1085_330-1084insGTATATATATATGTGTATATATATATGT GTAT	FREM1	ENSG00000164946.20	transcript	ENST00000380880.4	protein_coding	3/36			chr9	TogoVar
FREM2_chr13_38682077_38892131	38840644	A A	ATATATAT others(25): Show ATATATATATATATATATATATATATATATGTG	intron_variant intron_variant	MODIFIER	HG03017.hp1 HG03017.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0007 a0001c0002t0007	a0001c0002t0007g0179 a0001c0002t0007g0179	1	262	0.0038	32	c.602 others(51): Show c.6020-5928_6020-5927insATATATATATATATATATATATATAT ATGTGT	FREM2	ENSG00000150893.11	transcript	ENST00000280481.9	protein_coding	6/23		INFO_REALIGN_3_PRIME	chr13	TogoVar
FRMD3_chr9_83239622_83543401	83362804	T T	TTCCTTCC others(25): Show TTCCTTCCTTCCTTCGCTTCTTCCTTCCCTCCC	intron_variant intron_variant	MODIFIER	HG01891.hp1 HG02257.hp1 HG02717.hp2 others(2): Show HG01891.hp1 HG02257.hp1 HG02717.hp2 HG02922.hp2 NA20129.hp2	a0001 a0001	a0001c0001 a0001c0005 a0001c0001 a0001c0005	a0001c0001t0006 a0001c0001t0012 a0001c0005t0008 a0001c0001t0006 a0001c0001t0012 a0001c0005t0008	a0001c0001t0006g0007 a0001c0001t0006g0036 a0001c0001t0006g0037 others(2): Show a0001c0001t0006g0007 a0001c0001t0006g0036 a0001c0001t0006g0037 a0001c0001t0012g0109 a0001c0005t0008g0008	5	242	0.0207	32	c.295 others(51): Show c.295+10108_295+10109insGGGAGGGAAGGAAGAAGCGAAGGAAG GAAGGA	FRMD3	ENSG00000172159.16	transcript	ENST00000304195.8	protein_coding	3/13			chr9	TogoVar
FRMD3_chr9_83239622_83543401	83407873	C C	CTCTCTCT others(25): Show CTCTCTCTCTCTCTCTCATCTTTCTCTCTCTCT	intron_variant intron_variant	MODIFIER	NA20752.hp2 NA20752.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0242 a0001c0001t0002g0242	1	242	0.0041	32	c.148 others(51): Show c.148-18166_148-18165insAGAGAGAGAGAAAGATGAGAGAGAGA GAGAGA	FRMD3	ENSG00000172159.16	transcript	ENST00000304195.8	protein_coding	1/13			chr9	TogoVar
FRMD3_chr9_83239622_83543401	83507704	A A	ATATATAT others(25): Show ATATATATATATATATATATATATATATATATC	intron_variant intron_variant	MODIFIER	HG01496.hp1 HG01496.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0016 a0001c0001t0016	a0001c0001t0016g0031 a0001c0001t0016g0031	1	242	0.0041	32	c.147 others(51): Show c.147+30380_147+30381insGATATATATATATATATATATATATA TATATA	FRMD3	ENSG00000172159.16	transcript	ENST00000304195.8	protein_coding	1/13			chr9	TogoVar

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