Joint Open Genome and Omics Platform (JoGo)

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Snpeff annotation impact detail

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regionname	pos	ref	alt	annotation	impact	samples	ahapids	chapids	thapids	thapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	status	chr	external
GRAMD1B_chr11_123425269_123632767	123513617	C C	CCTTCCTT others(25): Show CCTTCCTTCCTTCCTTTCTTTCTTTCTTTCTTT	intron_variant intron_variant	MODIFIER	HG01496.hp1 NA18983.hp2 HG01496.hp1 NA18983.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0007 a0001c0002t0023 a0001c0001t0007 a0001c0002t0023	a0001c0001t0007g0201 a0001c0002t0023g0068 a0001c0001t0007g0201 a0001c0002t0023g0068	2	84	0.0238	32	c.452 others(51): Show c.452+32727_452+32728insCCTTCCTTCCTTTCTTTCTTTCTTTC TTTCTT	GRAMD1B	ENSG00000023171.20	transcript	ENST00000635736.2	protein_coding	2/19	INFO_REALIGN_3_PRIME	chr11	TogoVar
GRAMD1B_chr11_123425269_123632767	123513617	C C	CCTTCCTT others(25): Show CCTTCCTTCCTTTCTTTCTTTCTTTCTTTCTTT	intron_variant intron_variant	MODIFIER	HG02683.hp1 HG02683.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0016 a0001c0001t0016	a0001c0001t0016g0196 a0001c0001t0016g0196	1	83	0.0120	32	c.452 others(51): Show c.452+32727_452+32728insCCTTCCTTTCTTTCTTTCTTTCTTTC TTTCTT	GRAMD1B	ENSG00000023171.20	transcript	ENST00000635736.2	protein_coding	2/19	INFO_REALIGN_3_PRIME	chr11	TogoVar
GRAMD1B_chr11_123425269_123632767	123513617	C C	CCTTTCTT others(25): Show CCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTT	intron_variant intron_variant	MODIFIER	HG01361.hp1 HG01496.hp2 HG01515.hp2 others(1): Show HG01361.hp1 HG01496.hp2 HG01515.hp2 HG02280.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0001 a0001c0001t0002	a0001c0001t0001g0014 a0001c0001t0001g0037 a0001c0001t0001g0261 others(1): Show a0001c0001t0001g0014 a0001c0001t0001g0037 a0001c0001t0001g0261 a0001c0001t0002g0234	4	86	0.0465	32	c.452 others(51): Show c.452+32752_452+32753insCTTTCTTTCTTTCTTTCTTTCTTTCT TTCTTT	GRAMD1B	ENSG00000023171.20	transcript	ENST00000635736.2	protein_coding	2/19	INFO_REALIGN_3_PRIME	chr11	TogoVar
GRAMD1B_chr11_123425269_123632767	123513623	T T	TTTCTTCT others(25): Show TTTCTTCTCTTTCTTTCTTTCTTTCTTTCTTTC	intron_variant intron_variant	MODIFIER	NA18999.hp1 NA18999.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0144 a0001c0001t0001g0144	1	280	0.0036	32	c.452 others(51): Show c.452+32735_452+32736insCTCTTTCTTTCTTTCTTTCTTTCTTT CTTCTT	GRAMD1B	ENSG00000023171.20	transcript	ENST00000635736.2	protein_coding	2/19	INFO_REALIGN_3_PRIME	chr11	TogoVar
GRAMD1B_chr11_123425269_123632767	123589612	T T	TTATATAT others(25): Show TTATATATATATATATATATATATATATATATA	intron_variant intron_variant	MODIFIER	HG02055.hp1 HG02970.hp2 HG03130.hp2 others(1): Show HG02055.hp1 HG02970.hp2 HG03130.hp2 HG03471.hp2	a0001 a0001	a0001c0001 a0001c0003 a0001c0001 a0001c0003	a0001c0001t0020 a0001c0001t0037 a0001c0001t0071 others(1): Show a0001c0001t0020 a0001c0001t0037 a0001c0001t0071 a0001c0003t0015	a0001c0001t0020g0230 a0001c0001t0037g0024 a0001c0001t0071g0022 others(1): Show a0001c0001t0020g0230 a0001c0001t0037g0024 a0001c0001t0071g0022 a0001c0003t0015g0016	4	152	0.0263	32	c.685 others(49): Show c.685-4469_685-4468insATATATATATATATATATATATATATAT ATAT	GRAMD1B	ENSG00000023171.20	transcript	ENST00000635736.2	protein_coding	4/19	INFO_REALIGN_3_PRIME	chr11	TogoVar
GRAMD1C_chr3_113833788_113952174	113849964	G G	GCGGGGGG others(25): Show GCGGGGGGCTGACCCCCCCACCTCCCTCCCGGA	intron_variant intron_variant	MODIFIER	HG00099.hp1 HG00140.hp2 HG00642.hp2 others(39): Show HG00099.hp1 HG00140.hp2 HG00642.hp2 HG01074.hp1 HG01243.hp2 HG01256.hp2 HG01891.hp1 HG02004.hp1 HG02040.hp2 HG02055.hp2 HG02109.hp2 HG02135.hp2 HG02155.hp1 HG02559.hp1 HG02615.hp2 HG02622.hp1 HG02717.hp2 HG02818.hp2 HG02896.hp2 HG02897.hp1 HG02922.hp2 HG02965.hp2 HG02976.hp2 HG03041.hp2 HG03130.hp1 HG03139.hp1 HG03225.hp1 HG03471.hp1 HG03486.hp1 HG03491.hp2 HG03579.hp2 HG03927.hp1 HG04228.hp1 HG06807.hp2 NA18945.hp1 NA18948.hp1 NA18961.hp1 NA19007.hp2 NA19010.hp1 NA19065.hp2 NA19081.hp2 NA21309.hp1	a0001 a0002 a0005 others(1): Show a0001 a0002 a0005 a0012	a0001c0001 a0001c0003 a0001c0005 others(3): Show a0001c0001 a0001c0003 a0001c0005 a0002c0006 a0005c0013 a0012c0014	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(11): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0006 a0001c0001t0008 a0001c0001t0012 a0001c0001t0021 a0001c0003t0002 a0001c0003t0007 a0001c0005t0010 a0001c0005t0015 a0002c0006t0009 a0005c0013t0003 a0012c0014t0002	a0001c0001t0001g0106 a0001c0001t0001g0107 a0001c0001t0001g0108 others(39): Show a0001c0001t0001g0106 a0001c0001t0001g0107 a0001c0001t0001g0108 a0001c0001t0001g0109 a0001c0001t0001g0110 a0001c0001t0001g0111 a0001c0001t0001g0114 a0001c0001t0001g0119 a0001c0001t0001g0120 a0001c0001t0001g0248 a0001c0001t0001g0273 a0001c0001t0001g0284 a0001c0001t0001g0285 a0001c0001t0001g0303 a0001c0001t0001g0304 a0001c0001t0001g0305 a0001c0001t0001g0306 a0001c0001t0001g0307 a0001c0001t0001g0311 a0001c0001t0001g0312 a0001c0001t0001g0313 a0001c0001t0002g0116 a0001c0001t0002g0302 a0001c0001t0002g0308 a0001c0001t0003g0122 a0001c0001t0003g0125 a0001c0001t0006g0105 a0001c0001t0006g0309 a0001c0001t0008g0314 a0001c0001t0012g0102 a0001c0001t0012g0104 a0001c0001t0012g0115 a0001c0001t0021g0286 a0001c0003t0002g0103 a0001c0003t0002g0113 a0001c0003t0002g0118 a0001c0003t0007g0112 a0001c0005t0010g0301 a0001c0005t0015g0127 a0002c0006t0009g0310 a0005c0013t0003g0121 a0012c0014t0002g0117	42	321	0.1308	32	c.174 others(49): Show c.174+5321_174+5352dupGGCTGACCCCCCCACCTCCCTCCCGGAC GGGG	GRAMD1C	ENSG00000178075.20	transcript	ENST00000358160.9	protein_coding	2/17	INFO_REALIGN_3_PRIME	chr3	TogoVar
GRAMD4_chr22_46615386_46684785	46648911	G G	GATGGATG others(25): Show GATGGATGGATGGATGGATGGATGGATGGATGC	intron_variant intron_variant	MODIFIER	HG02145.hp2 HG02145.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0009 a0001c0001t0009	a0001c0001t0009g0036 a0001c0001t0009g0036	1	315	0.0032	32	c.284 others(49): Show c.284-9253_284-9252insGATGGATGCATGGATGGATGGATGGATG GATG	GRAMD4	ENSG00000075240.17	transcript	ENST00000406902.6	protein_coding	3/18	INFO_REALIGN_3_PRIME	chr22	TogoVar
GREB1L_chr18_21237232_21531112	21429129	T T	TCCTTCCT others(25): Show TCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTC	intron_variant intron_variant	MODIFIER	HG06807.hp2 HG06807.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0014 a0001c0001t0014	a0001c0001t0014g0142 a0001c0001t0014g0142	1	145	0.0069	32	c.833 others(51): Show c.833-10373_833-10372insTCCTTCCTTCCTCCCTTCCTTCCTTC CTTCCT	GREB1L	ENSG00000141449.16	transcript	ENST00000424526.7	protein_coding	7/32	INFO_REALIGN_3_PRIME	chr18	TogoVar
GREB1_chr2_11529045_11647788	11539027	T T	TCTTCTCT others(25): Show TCTTCTCTTCTCCTCCTTTCTCCCTTCTCCTCC	intron_variant intron_variant	MODIFIER	HG01261.hp1 HG02572.hp2 HG01261.hp1 HG02572.hp2	a0018 a0028 a0018 a0028	a0018c0037 a0028c0067 a0018c0037 a0028c0067	a0018c0037t0053 a0028c0067t0021 a0018c0037t0053 a0028c0067t0021	a0018c0037t0053g0067 a0028c0067t0021g0070 a0018c0037t0053g0067 a0028c0067t0021g0070	2	304	0.0066	32	c.-16 others(51): Show c.-162+4784_-162+4785insCTCCTTTCTCCCTTCTCCTCCCTTCT CTTCTC	GREB1	ENSG00000196208.14	transcript	ENST00000381486.7	protein_coding	1/32	INFO_REALIGN_3_PRIME	chr2	TogoVar
GREB1_chr2_11529045_11647788	11539032	T T	TCTTCTCT others(25): Show TCTTCTCTTCTCCTCCTTTCTCCCTTCTCCTCC	intron_variant intron_variant	MODIFIER	HG02258.hp1 HG02895.hp2 HG02897.hp2 others(4): Show HG02258.hp1 HG02895.hp2 HG02897.hp2 HG02965.hp1 HG03453.hp2 NA18906.hp1 NA19030.hp2	a0005 a0008 a0010 others(3): Show a0005 a0008 a0010 a0018 a0019 a0037	a0005c0066 a0008c0015 a0010c0032 others(3): Show a0005c0066 a0008c0015 a0010c0032 a0018c0037 a0019c0036 a0037c0048	a0005c0066t0022 a0008c0015t0021 a0010c0032t0028 others(3): Show a0005c0066t0022 a0008c0015t0021 a0010c0032t0028 a0018c0037t0003 a0019c0036t0001 a0037c0048t0015	a0005c0066t0022g0072 a0008c0015t0021g0069 a0010c0032t0028g0007 others(4): Show a0005c0066t0022g0072 a0008c0015t0021g0069 a0010c0032t0028g0007 a0010c0032t0028g0009 a0018c0037t0003g0298 a0019c0036t0001g0300 a0037c0048t0015g0008	7	304	0.0230	32	c.-16 others(51): Show c.-162+4789_-162+4790insCTCCTTTCTCCCTTCTCCTCCCTTCT CTTCTC	GREB1	ENSG00000196208.14	transcript	ENST00000381486.7	protein_coding	1/32	INFO_REALIGN_3_PRIME	chr2	TogoVar
GREB1_chr2_11529045_11647788	11587741	A A	ACACACAC others(25): Show ACACACACACACACACACACACACACACGCGCG	intron_variant intron_variant	MODIFIER	HG01993.hp2 NA18989.hp2 NA19002.hp2 HG01993.hp2 NA18989.hp2 NA19002.hp2	a0001 a0003 a0001 a0003	a0001c0001 a0003c0003 a0001c0001 a0003c0003	a0001c0001t0002 a0003c0003t0001 a0003c0003t0005 a0001c0001t0002 a0003c0003t0001 a0003c0003t0005	a0001c0001t0002g0197 a0003c0003t0001g0155 a0003c0003t0005g0109 a0001c0001t0002g0197 a0003c0003t0001g0155 a0003c0003t0005g0109	3	169	0.0178	32	c.116 others(51): Show c.1160-1004_1160-1003insACACACACACACACACACACACACAC GCGCGC	GREB1	ENSG00000196208.14	transcript	ENST00000381486.7	protein_coding	9/32	INFO_REALIGN_3_PRIME	chr2	TogoVar
GREB1_chr2_11529045_11647788	11587741	A A	ACACACAC others(25): Show ACACACACACACACACACACACACACGCGCGCG	intron_variant intron_variant	MODIFIER	NA18941.hp1 NA18941.hp1	a0005 a0005	a0005c0002 a0005c0002	a0005c0002t0003 a0005c0002t0003	a0005c0002t0003g0095 a0005c0002t0003g0095	1	167	0.0060	32	c.116 others(51): Show c.1160-1004_1160-1003insACACACACACACACACACACACACGC GCGCGC	GREB1	ENSG00000196208.14	transcript	ENST00000381486.7	protein_coding	9/32	INFO_REALIGN_3_PRIME	chr2	TogoVar
GREB1_chr2_11529045_11647788	11587741	A A	ACACACAC others(25): Show ACACACACACACACACACACACACGCGCGCGCG	intron_variant intron_variant	MODIFIER	HG03669.hp2 HG03669.hp2	a0042 a0042	a0042c0093 a0042c0093	a0042c0093t0002 a0042c0093t0002	a0042c0093t0002g0178 a0042c0093t0002g0178	1	167	0.0060	32	c.116 others(51): Show c.1160-1004_1160-1003insACACACACACACACACACACACGCGC GCGCGC	GREB1	ENSG00000196208.14	transcript	ENST00000381486.7	protein_coding	9/32	INFO_REALIGN_3_PRIME	chr2	TogoVar
GREB1_chr2_11529045_11647788	11587741	A A	ACACACAC others(25): Show ACACACACACACACACACACACGCGCGCGCGCG	intron_variant intron_variant	MODIFIER	HG03516.hp1 HG03516.hp1	a0002 a0002	a0002c0007 a0002c0007	a0002c0007t0020 a0002c0007t0020	a0002c0007t0020g0308 a0002c0007t0020g0308	1	167	0.0060	32	c.116 others(51): Show c.1160-1004_1160-1003insACACACACACACACACACACGCGCGC GCGCGC	GREB1	ENSG00000196208.14	transcript	ENST00000381486.7	protein_coding	9/32	INFO_REALIGN_3_PRIME	chr2	TogoVar
GREB1_chr2_11529045_11647788	11618128	A A	AGATGGGC others(25): Show AGATGGGCCACTCCTGGGACAGGTCACTCCTGG	intron_variant intron_variant	MODIFIER	NA18981.hp1 NA19060.hp1 NA18981.hp1 NA19060.hp1	a0001 a0004 a0001 a0004	a0001c0001 a0004c0004 a0001c0001 a0004c0004	a0001c0001t0072 a0004c0004t0004 a0001c0001t0072 a0004c0004t0004	a0001c0001t0072g0229 a0004c0004t0004g0289 a0001c0001t0072g0229 a0004c0004t0004g0289	2	298	0.0067	32	c.341 others(49): Show c.3413-153_3413-122dupCCACTCCTGGGACAGGTCACTCCTGGGA TGGG	GREB1	ENSG00000196208.14	transcript	ENST00000381486.7	protein_coding	21/32	INFO_REALIGN_3_PRIME	chr2	TogoVar
GREB1_chr2_11529045_11647788	11618136	C C	CACTCCTG others(25): Show CACTCCTGGGACAGGTCACTCCTGGGATGGGTG	intron_variant intron_variant	MODIFIER	HG00408.hp1 HG00408.hp2 HG01109.hp2 others(16): Show HG00408.hp1 HG00408.hp2 HG01109.hp2 HG01175.hp2 HG01261.hp1 HG02280.hp1 HG02965.hp2 HG03017.hp1 HG03654.hp2 HG03831.hp2 NA18906.hp2 NA18953.hp2 NA18961.hp2 NA18975.hp2 NA18981.hp2 NA19067.hp2 NA19086.hp1 NA19240.hp1 NA20129.hp1	a0001 a0002 a0003 others(8): Show a0001 a0002 a0003 a0004 a0006 a0007 a0008 a0009 a0018 a0025 a0040	a0001c0001 a0002c0005 a0002c0007 others(11): Show a0001c0001 a0002c0005 a0002c0007 a0002c0012 a0002c0061 a0003c0003 a0004c0004 a0006c0097 a0007c0006 a0008c0044 a0009c0019 a0018c0037 a0025c0059 a0040c0050	a0001c0001t0002 a0001c0001t0068 a0002c0005t0001 others(15): Show a0001c0001t0002 a0001c0001t0068 a0002c0005t0001 a0002c0007t0052 a0002c0012t0023 a0002c0061t0061 a0003c0003t0030 a0004c0004t0002 a0004c0004t0004 a0006c0097t0012 a0007c0006t0017 a0007c0006t0054 a0008c0044t0039 a0009c0019t0013 a0009c0019t0073 a0018c0037t0053 a0025c0059t0023 a0040c0050t0006	a0001c0001t0002g0193 a0001c0001t0002g0218 a0001c0001t0068g0288 others(16): Show a0001c0001t0002g0193 a0001c0001t0002g0218 a0001c0001t0068g0288 a0002c0005t0001g0033 a0002c0007t0052g0075 a0002c0012t0023g0083 a0002c0061t0061g0128 a0003c0003t0030g0064 a0004c0004t0002g0202 a0004c0004t0004g0203 a0006c0097t0012g0042 a0007c0006t0017g0015 a0007c0006t0054g0019 a0008c0044t0039g0011 a0009c0019t0013g0162 a0009c0019t0073g0285 a0018c0037t0053g0067 a0025c0059t0023g0116 a0040c0050t0006g0186	19	100	0.1900	32	c.341 others(47): Show c.3413-72_3413-41dupCACTCCTGGGATGGGTGACTCCTGGGACAG GT	GREB1	ENSG00000196208.14	transcript	ENST00000381486.7	protein_coding	21/32	INFO_REALIGN_3_PRIME	chr2	TogoVar
GREB1_chr2_11529045_11647788	11618160	G G	GGATGGGC others(25): Show GGATGGGCCACTCCTGGGACAGGTCACTCCTGA	intron_variant intron_variant	MODIFIER	HG02083.hp1 HG02083.hp1	a0004 a0004	a0004c0004 a0004c0004	a0004c0004t0008 a0004c0004t0008	a0004c0004t0008g0273 a0004c0004t0008g0273	1	306	0.0033	32	c.341 others(49): Show c.3413-122_3413-121insCCACTCCTGGGACAGGTCACTCCTGAGA TGGG	GREB1	ENSG00000196208.14	transcript	ENST00000381486.7	protein_coding	21/32	INFO_REALIGN_3_PRIME	chr2	TogoVar
GREB1_chr2_11529045_11647788	11618167	T T	TGACTCCT others(25): Show TGACTCCTGGGACAGGTCACTCCTGGGATGGGC	intron_variant intron_variant	MODIFIER	HG04199.hp1 HG04199.hp1	a0002 a0002	a0002c0005 a0002c0005	a0002c0005t0011 a0002c0005t0011	a0002c0005t0011g0242 a0002c0005t0011g0242	1	297	0.0034	32	c.341 others(47): Show c.3413-90_3413-89insCGACTCCTGGGACAGGTCACTCCTGGGATG GG	GREB1	ENSG00000196208.14	transcript	ENST00000381486.7	protein_coding	21/32	INFO_REALIGN_3_PRIME	chr2	TogoVar
GREB1_chr2_11529045_11647788	11618168	G G	GACTCCTG others(25): Show GACTCCTGGGACGAGTCGCCCCTGAGATGGGCC	intron_variant intron_variant	MODIFIER	HG01192.hp2 HG01192.hp2	a0007 a0007	a0007c0006 a0007c0006	a0007c0006t0005 a0007c0006t0005	a0007c0006t0005g0121 a0007c0006t0005g0121	1	289	0.0035	32	c.341 others(49): Show c.3413-109_3413-108insGAGTCGCCCCTGAGATGGGCCACTCCTG GGAC	GREB1	ENSG00000196208.14	transcript	ENST00000381486.7	protein_coding	21/32	INFO_REALIGN_3_PRIME	chr2	TogoVar
GREB1_chr2_11529045_11647788	11618192	G G	GGATGGGC others(25): Show GGATGGGCCACTCCTGGGACAGGTCACTCCTGA	intron_variant intron_variant	MODIFIER	HG02083.hp2 HG02083.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0007 a0001c0001t0007	a0001c0001t0007g0138 a0001c0001t0007g0138	1	303	0.0033	32	c.341 others(47): Show c.3413-90_3413-89insCCACTCCTGGGACAGGTCACTCCTGAGATG GG	GREB1	ENSG00000196208.14	transcript	ENST00000381486.7	protein_coding	21/32	INFO_REALIGN_3_PRIME	chr2	TogoVar
GRHL1_chr2_9946693_10007277	9979151	C C	CAAAAAAA others(25): Show CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG03688.hp1 HG03688.hp1	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0002 a0002c0002t0002	a0002c0002t0002g0163 a0002c0002t0002g0163	1	159	0.0063	32	c.111 others(51): Show c.1111-6957_1111-6956insAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAA	GRHL1	ENSG00000134317.18	transcript	ENST00000324907.14	protein_coding	8/15	INFO_REALIGN_3_PRIME	chr2	TogoVar
GRHL3_chr1_24314357_24360318	24326389	T T	TCCTCCAC others(25): Show TCCTCCACCCCTCTTCTCCTCCACCCCTATTCC	intron_variant intron_variant	MODIFIER	NA19043.hp2 NA19043.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0235 a0001c0001t0001g0235	1	370	0.0027	32	c.18- others(47): Show c.18-5026_18-5025insCTTCTCCTCCACCCCTATTCCCCTCCACCC CT	GRHL3	ENSG00000158055.17	transcript	ENST00000361548.9	protein_coding	1/15	INFO_REALIGN_3_PRIME	chr1	TogoVar
GRHL3_chr1_24314357_24360318	24345043	C C	CCTCCACA others(25): Show CCTCCACACCTGTGCCCCCTCCACACCTGTGCA	intron_variant intron_variant	MODIFIER	HG02027.hp2 NA18943.hp2 NA18997.hp2 HG02027.hp2 NA18943.hp2 NA18997.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0103 a0001c0002t0001g0168 a0001c0002t0001g0173 a0001c0002t0001g0103 a0001c0002t0001g0168 a0001c0002t0001g0173	3	4	0.7500	32	c.145 others(49): Show c.1454+113_1454+114insTCCACACCTGTGCCCCCTCCACACCTGT GCAC	GRHL3	ENSG00000158055.17	transcript	ENST00000361548.9	protein_coding	12/15	INFO_REALIGN_3_PRIME	chr1	TogoVar
GRHL3_chr1_24314357_24360318	24345157	C C	CCCCTCCA others(25): Show CCCCTCCACACCTGTGCCCCCTTTACACCTGTG	intron_variant intron_variant	MODIFIER	NA19055.hp2 NA19055.hp2	a0002 a0002	a0002c0006 a0002c0006	a0002c0006t0001 a0002c0006t0001	a0002c0006t0001g0291 a0002c0006t0001g0291	1	271	0.0037	32	c.145 others(49): Show c.1454+229_1454+230insTCCACACCTGTGCCCCCTTTACACCTGT GCCC	GRHL3	ENSG00000158055.17	transcript	ENST00000361548.9	protein_coding	12/15	INFO_REALIGN_3_PRIME	chr1	TogoVar
GRIA1_chr5_153485670_153818869	153566304	C C	CTTTTTTT others(25): Show CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG00099.hp2 HG00323.hp1 HG00639.hp1 others(9): Show HG00099.hp2 HG00323.hp1 HG00639.hp1 HG00639.hp2 HG01099.hp1 HG01169.hp1 HG01256.hp1 HG03239.hp1 HG03710.hp2 NA18612.hp1 NA18985.hp2 NA19091.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0001 a0001c0001t0002 a0001c0001t0014 others(1): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0014 a0001c0002t0001	a0001c0001t0001g0004 a0001c0001t0001g0005 a0001c0001t0001g0040 others(9): Show a0001c0001t0001g0004 a0001c0001t0001g0005 a0001c0001t0001g0040 a0001c0001t0001g0075 a0001c0001t0001g0098 a0001c0001t0001g0099 a0001c0001t0001g0102 a0001c0001t0001g0110 a0001c0001t0001g0194 a0001c0001t0002g0145 a0001c0001t0014g0047 a0001c0002t0001g0053	12	13	0.9231	32	c.220 others(51): Show c.220+72255_220+72256insTTTTTTTTTTTTTTTTTTTTTTTTTT TTTTTT	GRIA1	ENSG00000155511.19	transcript	ENST00000285900.10	protein_coding	2/15	INFO_REALIGN_3_PRIME	chr5	TogoVar
GRIA2_chr4_157215728_157371075	157356121	A A	ATATTTAT others(25): Show ATATTTATATATATTTATATATTTATATTTATT	intron_variant intron_variant	MODIFIER	HG01168.hp1 HG01168.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0126 a0001c0001t0002g0126	1	216	0.0046	32	c.204 others(51): Show c.2044-3753_2044-3722dupTTATATTTATTTATTTATATATATTT ATATAT	GRIA2	ENSG00000120251.22	transcript	ENST00000264426.14	protein_coding	12/15	INFO_REALIGN_3_PRIME	chr4	TogoVar
GRIA2_chr4_157215728_157371075	157356149	T T	TTATTTAT others(25): Show TTATTTATTTATATATATTTATATATATTTATA	intron_variant intron_variant	MODIFIER	HG02071.hp1 HG02109.hp1 HG02071.hp1 HG02109.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0011 a0001c0001t0014 a0001c0001t0011 a0001c0001t0014	a0001c0001t0011g0015 a0001c0001t0014g0036 a0001c0001t0011g0015 a0001c0001t0014g0036	2	216	0.0093	32	c.204 others(51): Show c.2044-3719_2044-3688dupTTATATATTTATTTATATATATTTAT ATATAT	GRIA2	ENSG00000120251.22	transcript	ENST00000264426.14	protein_coding	12/15	INFO_REALIGN_3_PRIME	chr4	TogoVar
GRIA2_chr4_157215728_157371075	157356163	A A	ATATTTAT others(25): Show ATATTTATATATATTTATATATTTATATTTATT	intron_variant intron_variant	MODIFIER	NA19003.hp1 NA19003.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0002 a0001c0002t0002	a0001c0002t0002g0166 a0001c0002t0002g0166	1	216	0.0046	32	c.204 others(51): Show c.2044-3708_2044-3707insATTTATTTATTTATATATATTTATAT ATTTAT	GRIA2	ENSG00000120251.22	transcript	ENST00000264426.14	protein_coding	12/15	INFO_REALIGN_3_PRIME	chr4	TogoVar
GRIA3_chrX_123179278_123495915	123260457	A A	AAAGAAAG others(25): Show AAAGAAAGAAAGAAAGAAAGAAAGAAAGGAAGG	intron_variant intron_variant	MODIFIER	NA18972.hp1 NA18972.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0037 a0001c0001t0001g0037	1	89	0.0112	32	c.508 others(49): Show c.508+6918_508+6919insAAAGAAAGAAAGAAAGAAAGAAAGGAAG GAAG	GRIA3	ENSG00000125675.20	transcript	ENST00000620443.2	protein_coding	3/15	INFO_REALIGN_3_PRIME	chrX	TogoVar
GRIA3_chrX_123179278_123495915	123260457	A A	AAAGAAAG others(25): Show AAAGAAAGAAAGAAAGAAAGAAAGGAAGGAAGG	intron_variant intron_variant	MODIFIER	HG01243.hp1 HG02698.hp1 HG03688.hp1 HG01243.hp1 HG02698.hp1 HG03688.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0002 a0001c0002t0001 a0001c0002t0002	a0001c0002t0001g0094 a0001c0002t0002g0026 a0001c0002t0002g0147 a0001c0002t0001g0094 a0001c0002t0002g0026 a0001c0002t0002g0147	3	91	0.0330	32	c.508 others(49): Show c.508+6918_508+6919insAAAGAAAGAAAGAAAGAAAGGAAGGAAG GAAG	GRIA3	ENSG00000125675.20	transcript	ENST00000620443.2	protein_coding	3/15	INFO_REALIGN_3_PRIME	chrX	TogoVar
GRIA3_chrX_123179278_123495915	123260457	A A	AAAGAAAG others(25): Show AAAGAAAGAAAGAAAGAAAGGAAGGAAGGAAGG	intron_variant intron_variant	MODIFIER	HG01496.hp2 HG02622.hp1 HG04204.hp1 HG01496.hp2 HG02622.hp1 HG04204.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0001 a0001c0002t0001 a0001c0001t0001 a0001c0002t0001	a0001c0001t0001g0195 a0001c0002t0001g0054 a0001c0002t0001g0175 a0001c0001t0001g0195 a0001c0002t0001g0054 a0001c0002t0001g0175	3	91	0.0330	32	c.508 others(49): Show c.508+6918_508+6919insAAAGAAAGAAAGAAAGGAAGGAAGGAAG GAAG	GRIA3	ENSG00000125675.20	transcript	ENST00000620443.2	protein_coding	3/15	INFO_REALIGN_3_PRIME	chrX	TogoVar
GRIA3_chrX_123179278_123495915	123260457	A A	AAAGAAAG others(25): Show AAAGAAAGAAAGAAAGGAAGGAAGGAAGGAAGG	intron_variant intron_variant	MODIFIER	HG01258.hp1 HG01433.hp1 HG02071.hp1 others(2): Show HG01258.hp1 HG01433.hp1 HG02071.hp1 HG02886.hp2 NA18522.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0001 a0001c0001t0002 a0001c0001t0019 others(1): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0019 a0001c0002t0009	a0001c0001t0001g0090 a0001c0001t0002g0019 a0001c0001t0002g0146 others(2): Show a0001c0001t0001g0090 a0001c0001t0002g0019 a0001c0001t0002g0146 a0001c0001t0019g0110 a0001c0002t0009g0088	5	93	0.0538	32	c.508 others(49): Show c.508+6918_508+6919insAAAGAAAGAAAGGAAGGAAGGAAGGAAG GAAG	GRIA3	ENSG00000125675.20	transcript	ENST00000620443.2	protein_coding	3/15	INFO_REALIGN_3_PRIME	chrX	TogoVar
GRIA3_chrX_123179278_123495915	123260457	A A	AAAGAAAG others(25): Show AAAGAAAGAAAGGAAGGAAGGAAGGAAGGAAGG	intron_variant intron_variant	MODIFIER	HG01167.hp1 HG01169.hp2 HG01167.hp1 HG01169.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0002 a0001c0002t0002	a0001c0002t0002g0060 a0001c0002t0002g0068 a0001c0002t0002g0060 a0001c0002t0002g0068	2	90	0.0222	32	c.508 others(49): Show c.508+6918_508+6919insAAAGAAAGGAAGGAAGGAAGGAAGGAAG GAAG	GRIA3	ENSG00000125675.20	transcript	ENST00000620443.2	protein_coding	3/15	INFO_REALIGN_3_PRIME	chrX	TogoVar
GRIA3_chrX_123179278_123495915	123463550	C C	CGAAGGAA others(25): Show CGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAG	intron_variant intron_variant	MODIFIER	HG01496.hp1 HG02886.hp2 HG01496.hp1 HG02886.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0006 a0001c0001t0002 a0001c0001t0006	a0001c0001t0002g0146 a0001c0001t0006g0145 a0001c0001t0002g0146 a0001c0001t0006g0145	2	166	0.0120	32	c.207 others(51): Show c.2077-1286_2077-1285insAAGGAAGGAAGGAAGGAAGGAAGGAA GGAAGG	GRIA3	ENSG00000125675.20	transcript	ENST00000620443.2	protein_coding	12/15	INFO_REALIGN_3_PRIME	chrX	TogoVar
GRIA3_chrX_123179278_123495915	123463576	A A	AAGGAAGG others(25): Show AAGGAAGGAAGGAAGGAAGGAAGGAAGGGAGGG	intron_variant intron_variant	MODIFIER	HG02895.hp1 HG02897.hp1 HG02895.hp1 HG02897.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0005 a0001c0002t0005	a0001c0002t0005g0205 a0001c0002t0005g0206 a0001c0002t0005g0205 a0001c0002t0005g0206	2	111	0.0180	32	c.207 others(51): Show c.2077-1286_2077-1285insAAGGAAGGAAGGAAGGAAGGAAGGGA GGGAGG	GRIA3	ENSG00000125675.20	transcript	ENST00000620443.2	protein_coding	12/15	INFO_REALIGN_3_PRIME	chrX	TogoVar
GRIA3_chrX_123179278_123495915	123471990	C C	CATATATA others(25): Show CATATATATATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG02257.hp2 NA19085.hp1 HG02257.hp2 NA19085.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0004 a0001c0002t0002 a0001c0001t0004 a0001c0002t0002	a0001c0001t0004g0039 a0001c0002t0002g0063 a0001c0001t0004g0039 a0001c0002t0002g0063	2	6	0.3333	32	c.232 others(51): Show c.2324+6879_2324+6910dupATATATATATATATATATATATATAT ATATAT	GRIA3	ENSG00000125675.20	transcript	ENST00000620443.2	protein_coding	13/15	INFO_REALIGN_3_PRIME	chrX	TogoVar
GRIA4_chr11_105605073_105987090	105911775	A A	AATACATA others(25): Show AATACATATATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG01346.hp1 HG01346.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0071 a0001c0001t0002g0071	1	51	0.0196	32	c.126 others(51): Show c.1269+1233_1269+1234insCATATATATATATATATATATATATA TATATA	GRIA4	ENSG00000152578.15	transcript	ENST00000282499.10	protein_coding	10/16	INFO_REALIGN_3_PRIME	chr11	TogoVar
GRIA4_chr11_105605073_105987090	105911775	A A	AATATATA others(25): Show AATATATATATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG01071.hp1 HG01109.hp1 HG02922.hp2 others(4): Show HG01071.hp1 HG01109.hp1 HG02922.hp2 HG04199.hp2 NA19054.hp1 NA19058.hp2 NA20805.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0005 a0001c0001t0007 others(3): Show a0001c0001t0002 a0001c0001t0005 a0001c0001t0007 a0001c0001t0009 a0001c0001t0040 a0001c0001t0046	a0001c0001t0002g0108 a0001c0001t0002g0141 a0001c0001t0005g0146 others(4): Show a0001c0001t0002g0108 a0001c0001t0002g0141 a0001c0001t0005g0146 a0001c0001t0007g0094 a0001c0001t0009g0180 a0001c0001t0040g0043 a0001c0001t0046g0004	7	57	0.1228	32	c.126 others(51): Show c.1269+1233_1269+1264dupATATATATATATATATATATATATAT ATATAT	GRIA4	ENSG00000152578.15	transcript	ENST00000282499.10	protein_coding	10/16	INFO_REALIGN_3_PRIME	chr11	TogoVar
GRID1_chr10_85594552_86371795	85737673	T T	TATATATA others(25): Show TATATATATATATATATATATATATATATATAA	intron_variant intron_variant	MODIFIER	HG00639.hp2 HG02622.hp2 HG02922.hp1 HG00639.hp2 HG02622.hp2 HG02922.hp1	a0001 a0001	a0001c0002 a0001c0004 a0001c0002 a0001c0004	a0001c0002t0005 a0001c0004t0015 a0001c0002t0005 a0001c0004t0015	a0001c0002t0005g0090 a0001c0002t0005g0092 a0001c0004t0015g0094 a0001c0002t0005g0090 a0001c0002t0005g0092 a0001c0004t0015g0094	3	77	0.0390	32	c.123 others(51): Show c.1234-8060_1234-8059insTTATATATATATATATATATATATAT ATATAT	GRID1	ENSG00000182771.19	transcript	ENST00000327946.12	protein_coding	8/15		chr10	TogoVar
GRID2_chr4_92298966_93779566	92411655	G G	GTGTGTGT others(25): Show GTGTGTGTGTGTGTGTGTATATATATATATATA	intron_variant intron_variant	MODIFIER	HG02922.hp2 NA19030.hp2 HG02922.hp2 NA19030.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0002c0003 a0001c0001 a0002c0003	a0001c0001t0001 a0002c0003t0001 a0001c0001t0001 a0002c0003t0001	a0001c0001t0001g0033 a0002c0003t0001g0034 a0001c0001t0001g0033 a0002c0003t0001g0034	2	21	0.0952	32	c.88+ others(51): Show c.88+106912_88+106913insGTGTGTGTGTGTGTGTATATATATAT ATATAT	GRID2	ENSG00000152208.13	transcript	ENST00000282020.9	protein_coding	1/15	INFO_REALIGN_3_PRIME	chr4	TogoVar
GRID2_chr4_92298966_93779566	92460032	C C	CTATATAT others(25): Show CTATATATATATATATATATATATATATATATA	intron_variant intron_variant	MODIFIER	HG02922.hp1 NA18906.hp1 HG02922.hp1 NA18906.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0010 a0001c0001t0001g0019 a0001c0001t0001g0010 a0001c0001t0001g0019	2	9	0.2222	32	c.89- others(51): Show c.89-130077_89-130076insTATATATATATATATATATATATATA TATATA	GRID2	ENSG00000152208.13	transcript	ENST00000282020.9	protein_coding	1/15	INFO_REALIGN_3_PRIME	chr4	TogoVar
GRID2_chr4_92298966_93779566	92548401	A A	ATTTTTTT others(25): Show ATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG03486.hp2 HG03486.hp2	a0001 a0001	a0001c0006 a0001c0006	a0001c0006t0002 a0001c0006t0002	a0001c0006t0002g0030 a0001c0006t0002g0030	1	7	0.1429	32	c.89- others(49): Show c.89-41712_89-41711insTTTTTTTTTTTTTTTTTTTTTTTTTTTT TTTT	GRID2	ENSG00000152208.13	transcript	ENST00000282020.9	protein_coding	1/15	INFO_REALIGN_3_PRIME	chr4	TogoVar
GRID2_chr4_92298966_93779566	93078779	G G	GTATATAC others(25): Show GTATATACTAAATATAATTATATTTATGTACTA	intron_variant intron_variant	MODIFIER	HG01192.hp2 HG01496.hp1 HG01496.hp2 others(13): Show HG01192.hp2 HG01496.hp1 HG01496.hp2 HG01978.hp1 HG01978.hp2 HG02698.hp1 HG03041.hp1 HG03486.hp1 HG03486.hp2 NA18906.hp2 NA18942.hp1 NA18950.hp1 NA18950.hp2 NA19030.hp1 NA19030.hp2 NA20129.hp1	a0001 a0003 a0001 a0003	a0001c0001 a0001c0002 a0001c0006 others(1): Show a0001c0001 a0001c0002 a0001c0006 a0003c0007	a0001c0001t0001 a0001c0001t0004 a0001c0002t0001 others(2): Show a0001c0001t0001 a0001c0001t0004 a0001c0002t0001 a0001c0006t0002 a0003c0007t0005	a0001c0001t0001g0005 a0001c0001t0001g0007 a0001c0001t0001g0008 others(13): Show a0001c0001t0001g0005 a0001c0001t0001g0007 a0001c0001t0001g0008 a0001c0001t0001g0014 a0001c0001t0001g0017 a0001c0001t0001g0018 a0001c0001t0001g0023 a0001c0001t0001g0025 a0001c0001t0001g0033 a0001c0001t0004g0031 a0001c0002t0001g0002 a0001c0002t0001g0004 a0001c0002t0001g0015 a0001c0002t0001g0026 a0001c0006t0002g0030 a0003c0007t0005g0013	16	34	0.4706	32	c.245 others(49): Show c.245-6190_245-6159dupTGTACTATATATACTAAATATAATTATA TTTA	GRID2	ENSG00000152208.13	transcript	ENST00000282020.9	protein_coding	2/15	INFO_REALIGN_3_PRIME	chr4	TogoVar
GRID2_chr4_92298966_93779566	93264709	G G	GATATATA others(25): Show GATATATATATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	NA20129.hp2 NA20129.hp2	a0001 a0001	a0001c0004 a0001c0004	a0001c0004t0007 a0001c0004t0007	a0001c0004t0007g0028 a0001c0004t0007g0028	1	3	0.3333	32	c.124 others(53): Show c.1245+26235_1245+26236insATATATATATATATATATATATAT ATATATAT	GRID2	ENSG00000152208.13	transcript	ENST00000282020.9	protein_coding	8/15	INFO_REALIGN_3_PRIME	chr4	TogoVar
GRID2_chr4_92298966_93779566	93697869	G G	GTATATAT others(25): Show GTATATATATATATATATATATATATATATATA	intron_variant intron_variant	MODIFIER	NA18942.hp1 NA18942.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0002 a0001c0002t0001g0002	1	10	0.1000	32	c.236 others(53): Show c.2361-71330_2361-71329insATATATATATATATATATATATAT ATATATAT	GRID2	ENSG00000152208.13	transcript	ENST00000282020.9	protein_coding	14/15	INFO_REALIGN_3_PRIME	chr4	TogoVar
GRIK1_chr21_29531933_29944996	29559669	G G	GGGTCTAT others(25): Show GGGTCTATCGTGTGCTTACCTTCTGGATTGTAA	intron_variant intron_variant	MODIFIER	HG00738.hp1 HG00738.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0143 a0001c0002t0001g0143	1	162	0.0062	32	c.235 others(51): Show c.2356+1954_2356+1955insTTACAATCCAGAAGGTAAGCACACGA TAGACC	GRIK1	ENSG00000171189.18	transcript	ENST00000327783.9	protein_coding	15/17		chr21	TogoVar
GRIK1_chr21_29531933_29944996	29560400	C C	CCTTCCTT others(25): Show CCTTCCTTCCTTCCTTCCTTTCTTTCTTTCTTT	intron_variant intron_variant	MODIFIER	HG02451.hp2 HG02451.hp2	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0002 a0001c0003t0002	a0001c0003t0002g0081 a0001c0003t0002g0081	1	24	0.0417	32	c.235 others(51): Show c.2356+1223_2356+1224insAAAGAAAGAAAGAAAGGAAGGAAGGA AGGAAG	GRIK1	ENSG00000171189.18	transcript	ENST00000327783.9	protein_coding	15/17		chr21	TogoVar
GRIK1_chr21_29531933_29944996	29580033	A A	ATGTGTAT others(25): Show ATGTGTATATATGTATATATGTATATATATATG	intron_variant intron_variant	MODIFIER	NA19043.hp2 NA19043.hp2	a0001 a0001	a0001c0012 a0001c0012	a0001c0012t0001 a0001c0012t0001	a0001c0012t0001g0045 a0001c0012t0001g0045	1	162	0.0062	32	c.191 others(51): Show c.1912+1360_1912+1391dupCATATATATATACATATATACATATA TACACA	GRIK1	ENSG00000171189.18	transcript	ENST00000327783.9	protein_coding	13/17		chr21	TogoVar
GRIK1_chr21_29531933_29944996	29707442	C C	CCCTTCCT others(25): Show CCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTT	intron_variant intron_variant	MODIFIER	HG02809.hp1 HG02809.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0139 a0001c0001t0001g0139	1	142	0.0070	32	c.119 others(51): Show c.119-13380_119-13379insAAGGAAGGAAGGAAGGAAGGAAGGAA GGAAGG	GRIK1	ENSG00000171189.18	transcript	ENST00000327783.9	protein_coding	1/17		chr21	TogoVar
GRIK1_chr21_29531933_29944996	29707446	C C	CCCTCCCT others(25): Show CCCTCCCTCCCTCCCTCCCTTCCTTCCTTCCTT	intron_variant intron_variant	MODIFIER	HG02257.hp1 HG02257.hp1	a0001 a0001	a0001c0006 a0001c0006	a0001c0006t0001 a0001c0006t0001	a0001c0006t0001g0138 a0001c0006t0001g0138	1	53	0.0189	32	c.119 others(51): Show c.119-13384_119-13383insAAGGAAGGAAGGAAGGGAGGGAGGGA GGGAGG	GRIK1	ENSG00000171189.18	transcript	ENST00000327783.9	protein_coding	1/17		chr21	TogoVar

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