Joint Open Genome and Omics Platform (JoGo)

Search by Variant

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Chr

Chromosome name (e.g., chr11).

Snpeff genename

Exact SnpEff gene name.

Sampleids

Target sampleid (e.g. HG02615).

Snpeff haplotype class

Haplotype-annotation class (e.g., ahapid, ahapid+chapid).

Snpeff annotation impact

Exact impact level (e.g., HIGH, MODERATE, LOW).

Snpeff annotation impact detail

Keyword match in SnpEff annotation.

Hapid

One or more haplotype IDs (comma-separated; e.g., a0001, a01, a0001c0001, a01c02, a1c2, a0001c0001t0005, a0001c0001t0005g0018).

Samplehapid

Sample haplotype IDs to include (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

No_hapid

Haplotype IDs to exclude (comma-separated; e.g., a0001, a0002, a0001c0001, a0001c0001t0005, a1, a01).

No_samplehapid

Sample haplotype IDs to exclude (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

Start

Start position (GRCh38).

End

End position (GRCh38).

Minac

Minimum alternate allele count (≥).

Maxac

Maximum alternate allele count (≤).

Minlen

Minimum variant length (≥).

Maxlen

Maximum variant length (≤).

Sort By

Select column to sort.

Order by

Ascending or descending.

Show

Results per page.

regionname	pos	ref	alt	annotation	impact	samples	ahapids	achapids	acthapids	actghapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	external
LMOD3_chr3_69101065_69127595	69110853	A A	AAAAAAAA others(26): Show AAAAAAAAAAAAAAATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG00735.hp1 HG00735.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0135 a0001c0001t0135	a0001c0001t0135g0093 a0001c0001t0135g0093	1	428	0.0023	33	c.165 others(52): Show c.1657-1733_1657-1732insATATATATATATATATATATTTTTTT TTTTTTT	LMOD3	ENSG00000163380.16	transcript	ENST00000420581.7	protein_coding	2/2			chr3	TogoVar
LMTK2_chr7_98101862_98214638	98140135	T T	TTTCCTGT others(26): Show TTTCCTGTCTGTCTGTCCTTCCTTCCTTCCTTCC	intron_variant intron_variant	MODIFIER	HG03471.hp2 HG03471.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0264 a0001c0001t0002g0264	1	390	0.0026	33	c.232 others(50): Show c.232-1259_232-1258insCTGTCTGTCTGTCCTTCCTTCCTTCCTT CCTTC	LMTK2	ENSG00000164715.6	transcript	ENST00000297293.6	protein_coding	2/13		INFO_REALIGN_3_PRIME	chr7	TogoVar
LNX1_chr4_53454301_53596486	53506856	T T	TAAAAAAA others(26): Show TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG00738.hp1 HG01257.hp1 HG01258.hp1 others(11): Show HG00738.hp1 HG01257.hp1 HG01258.hp1 HG01346.hp2 HG02970.hp1 HG03710.hp2 HG03831.hp1 NA18965.hp1 NA18974.hp1 NA19066.hp1 NA19070.hp1 NA19083.hp2 NA19240.hp2 NA20805.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0010 a0001c0001t0013 a0001c0001t0001 a0001c0001t0010 a0001c0001t0013	a0001c0001t0001g0014 a0001c0001t0001g0036 a0001c0001t0001g0042 others(11): Show a0001c0001t0001g0014 a0001c0001t0001g0036 a0001c0001t0001g0042 a0001c0001t0001g0061 a0001c0001t0001g0115 a0001c0001t0001g0130 a0001c0001t0001g0191 a0001c0001t0001g0215 a0001c0001t0001g0316 a0001c0001t0001g0330 a0001c0001t0010g0348 a0001c0001t0010g0349 a0001c0001t0013g0350 a0001c0001t0013g0351	14	356	0.0393	33	c.775 others(48): Show c.775+460_775+461insTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT TTT	LNX1	ENSG00000072201.14	transcript	ENST00000263925.8	protein_coding	4/10			chr4	TogoVar
LOC114841035_chr11_64236095_64249132	64237126	G G	GAGAGAGA others(26): Show GAGAGAGAGAGACAGAGACAGACAGAGACAGACA	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01934.hp1 HG01975.hp1 HG02148.hp2 others(2): Show HG01934.hp1 HG01975.hp1 HG02148.hp2 HG02976.hp1 HG03098.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0001 a0001c0001t0002	a0001c0001t0001g0001 a0001c0001t0002g0001 a0001c0001t0001g0001 a0001c0001t0002g0001	5	330	0.0152	33	c.-41 others(44): Show c.-4154_-4153insAGAGAGAGAGACAGAGACAGACAGAGACAGACA	LOC114841035	ENSG00000286264.2	transcript	ENST00000652762.2	protein_coding		3968		chr11	TogoVar
LOC127933115_chrX_23778278_23788367	23780490	T T	TATAATAT others(26): Show TATAATATATATATATATTATATATATATATATA	upstream_gene_variant upstream_gene_variant	MODIFIER	NA19077.hp1 NA19077.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0000 a0001c0001t0000	a0001c0001t0000g0000 a0001c0001t0000g0000	1	334	0.0030	33	c.-27 others(44): Show c.-2788_-2787insATAATATATATATATATTATATATATATATATA	LOC127933115	ENSG00000288706.1	transcript	ENST00000683890.1	protein_coding		2787		chrX	TogoVar
LOC128462377_chr16_89312046_89423292	89415829	C C	CAAAAAAA others(26): Show CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG01884.hp2 HG03669.hp1 NA18992.hp1 HG01884.hp2 HG03669.hp1 NA18992.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0000 a0001c0001t0000	a0001c0001t0000g0197 a0001c0001t0000g0198 a0001c0001t0000g0199 a0001c0001t0000g0197 a0001c0001t0000g0198 a0001c0001t0000g0199	3	366	0.0082	33	c.9+2 others(46): Show c.9+2454_9+2455insTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT T	LOC128462377	ENSG00000288715.2	transcript	ENST00000711617.1	protein_coding	1/1			chr16	TogoVar
LOC647264_chr13_63827361_63838053	63833748	T T	TATATATA others(26): Show TATATATATATATATATATATATATATATATATA	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00140.hp2 NA19009.hp1 NA20752.hp1 others(1): Show HG00140.hp2 NA19009.hp1 NA20752.hp1 homoSapiens_chm13v2.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0000 a0001c0001t0002g0000	4	442	0.0091	33	c.-75 others(42): Show c.-756_-755insTATATATATATATATATATATATATATATATAT	LOC647264	ENSG00000285566.2	transcript	ENST00000648713.2	protein_coding		696		chr13	TogoVar
LPAR4_chrX_78742720_78763714	78758268	G G	GTAAGATC others(26): Show GTAAGATCAAATCAGTAATAAAAGCGTATATTAT	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG02273.hp1 HG02273.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0042 a0001c0001t0042	a0001c0001t0042g0033 a0001c0001t0042g0033	1	324	0.0031	33	c.23 others(44): Show c.2312_*2313insATATTATTAAGATCAAATCAGTAATAAAAGCGT	LPAR4	ENSG00000147145.14	transcript	ENST00000614823.5	protein_coding	5/5	2313	INFO_REALIGN_3_PRIME	chrX	TogoVar
LPA_chr6_160526482_160669275	160654014	A A	ATATATTA others(26): Show ATATATTATATTATATATAATATATATTATATAT	intron_variant intron_variant	MODIFIER	HG03209.hp1 HG03209.hp1	a0013 a0013	a0013c0049 a0013c0049	a0013c0049t0001 a0013c0049t0001	a0013c0049t0001g0126 a0013c0049t0001g0126	1	148	0.0068	33	c.50- others(48): Show c.50-3518_50-3517insATATATAATATATATTATATATAATATAAT ATA	LPA	ENSG00000198670.13	transcript	ENST00000316300.10	protein_coding	1/38			chr6	TogoVar
LPP_chr3_188149157_188895671	188495082	A A	ATATATAT others(26): Show ATATATATATATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG01074.hp1 HG02615.hp2 HG01074.hp1 HG02615.hp2	a0002 a0002	a0002c0004 a0002c0007 a0002c0004 a0002c0007	a0002c0004t0012 a0002c0007t0007 a0002c0004t0012 a0002c0007t0007	a0002c0004t0012g0040 a0002c0007t0007g0049 a0002c0004t0012g0040 a0002c0007t0007g0049	2	76	0.0263	33	c.306 others(52): Show c.306+10379_306+10380insATATATATATATATATATATATATAT ATATATT	LPP	ENSG00000145012.15	transcript	ENST00000617246.5	protein_coding	5/11		INFO_REALIGN_3_PRIME	chr3	TogoVar
LPP_chr3_188149157_188895671	188592562	T T	TGTTTGTT others(26): Show TGTTTGTTTTTTTTTTTTTTTTTTTTTTTTTTTG	intron_variant intron_variant	MODIFIER	HG02970.hp1 HG02970.hp1	a0005 a0005	a0005c0016 a0005c0016	a0005c0016t0043 a0005c0016t0043	a0005c0016t0043g0058 a0005c0016t0043g0058	1	76	0.0132	33	c.430 others(52): Show c.430-16599_430-16598insGTTTGTTTTTTTTTTTTTTTTTTTTT TTTTTTG	LPP	ENSG00000145012.15	transcript	ENST00000617246.5	protein_coding	6/11			chr3	TogoVar
LPP_chr3_188149157_188895671	188592563	T T	TTGTTTGT others(26): Show TTGTTTGTTTTTTTTTTTTTTTTTTTTTTTTTGG	intron_variant intron_variant	MODIFIER	HG02630.hp1 HG02630.hp1	a0002 a0002	a0002c0008 a0002c0008	a0002c0008t0027 a0002c0008t0027	a0002c0008t0027g0042 a0002c0008t0027g0042	1	76	0.0132	33	c.430 others(52): Show c.430-16598_430-16597insTGTTTGTTTTTTTTTTTTTTTTTTTT TTTTTGG	LPP	ENSG00000145012.15	transcript	ENST00000617246.5	protein_coding	6/11			chr3	TogoVar
LPP_chr3_188149157_188895671	188592563	T T	TTTGTTGT others(26): Show TTTGTTGTTTGTTTTTTTTTTTTTTTTTTTTTGG	intron_variant intron_variant	MODIFIER	HG00673.hp1 HG00673.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0055 a0001c0001t0055	a0001c0001t0055g0012 a0001c0001t0055g0012	1	76	0.0132	33	c.430 others(52): Show c.430-16598_430-16597insTTGTTGTTTGTTTTTTTTTTTTTTTT TTTTTGG	LPP	ENSG00000145012.15	transcript	ENST00000617246.5	protein_coding	6/11			chr3	TogoVar
LPP_chr3_188149157_188895671	188784722	T T	TTCCATCA others(26): Show TTCCATCATATATATATATTCCATCATATATATA	intron_variant intron_variant	MODIFIER	HG03139.hp1 HG03139.hp1	a0002 a0002	a0002c0003 a0002c0003	a0002c0003t0013 a0002c0003t0013	a0002c0003t0013g0027 a0002c0003t0013g0027	1	76	0.0132	33	c.141 others(54): Show c.1410+24441_1410+24442insCCATCATATATATATATTCCATCA TATATATAT	LPP	ENSG00000145012.15	transcript	ENST00000617246.5	protein_coding	9/11		INFO_REALIGN_3_PRIME	chr3	TogoVar
LRBA_chr4_150259435_151020284	150648158	C C	CAAAAAAA others(26): Show CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG02074.hp1 HG02074.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0111 a0001c0001t0001g0111	1	180	0.0056	33	c.592 others(54): Show c.5921+35392_5921+35393insTTTTTTTTTTTTTTTTTTTTTTTT TTTTTTTTT	LRBA	ENSG00000198589.15	transcript	ENST00000651943.2	protein_coding	37/56			chr4	TogoVar
LRBA_chr4_150259435_151020284	150658505	G G	GTCTCCTC others(26): Show GTCTCCTCCCTCTCCCTCTCCCTCTCCCTCTCCC	intron_variant intron_variant	MODIFIER	HG01255.hp1 NA18966.hp1 NA19007.hp2 HG01255.hp1 NA18966.hp1 NA19007.hp2	a0001 a0014 a0001 a0014	a0001c0001 a0014c0034 a0001c0001 a0014c0034	a0001c0001t0001 a0001c0001t0002 a0014c0034t0003 a0001c0001t0001 a0001c0001t0002 a0014c0034t0003	a0001c0001t0001g0005 a0001c0001t0002g0103 a0014c0034t0003g0164 a0001c0001t0001g0005 a0001c0001t0002g0103 a0014c0034t0003g0164	3	180	0.0167	33	c.592 others(54): Show c.5921+25045_5921+25046insGGGAGAGGGAGAGGGAGAGGGAGA GGGAGGAGA	LRBA	ENSG00000198589.15	transcript	ENST00000651943.2	protein_coding	37/56			chr4	TogoVar
LRBA_chr4_150259435_151020284	150658696	C C	CTCTCCCT others(26): Show CTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCT	intron_variant intron_variant	MODIFIER	NA18959.hp2 NA18959.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0004	a0001c0001t0004g0104 a0001c0001t0004g0104	1	180	0.0056	33	c.592 others(54): Show c.5921+24854_5921+24855insAGAGGGAGAGGGAGAGGGAGAGGG AGAGGGAGA	LRBA	ENSG00000198589.15	transcript	ENST00000651943.2	protein_coding	37/56			chr4	TogoVar
LRCH1_chr13_46548170_46749898	46558572	C C	CAAAAAAA others(26): Show CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG01891.hp1 HG03453.hp2 NA19085.hp1 HG01891.hp1 HG03453.hp2 NA19085.hp1	a0001 a0001	a0001c0002 a0001c0009 a0001c0002 a0001c0009	a0001c0002t0001 a0001c0002t0027 a0001c0009t0004 a0001c0002t0001 a0001c0002t0027 a0001c0009t0004	a0001c0002t0001g0110 a0001c0002t0027g0108 a0001c0009t0004g0109 a0001c0002t0001g0110 a0001c0002t0027g0108 a0001c0009t0004g0109	3	274	0.0110	33	c.307 others(50): Show c.307+4895_307+4896insAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAA	LRCH1	ENSG00000136141.15	transcript	ENST00000389797.8	protein_coding	1/19		INFO_REALIGN_3_PRIME	chr13	TogoVar
LRCH1_chr13_46548170_46749898	46573866	A A	ATATATAT others(26): Show ATATATATATATATATATATATATATATATATTT	intron_variant intron_variant	MODIFIER	NA19000.hp2 NA19000.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0005 a0001c0001t0005	a0001c0001t0005g0208 a0001c0001t0005g0208	1	274	0.0037	33	c.307 others(52): Show c.307+20164_307+20165insATATATATATATATATATATATATAT ATATTTT	LRCH1	ENSG00000136141.15	transcript	ENST00000389797.8	protein_coding	1/19		INFO_REALIGN_3_PRIME	chr13	TogoVar
LRCH2_chrX_115105616_115239096	115167191	T T	TAAAAAAA others(26): Show TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG02698.hp1 HG02698.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0149 a0001c0001t0002g0149	1	238	0.0042	33	c.999 others(48): Show c.999-850_999-849insTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT TTT	LRCH2	ENSG00000130224.15	transcript	ENST00000317135.13	protein_coding	6/20			chrX	TogoVar
LRCH3_chr3_197786254_197893436	197792577	T T	TATATATA others(26): Show TATATATATATATATATATATATATATATATATA	intron_variant intron_variant	MODIFIER	HG02071.hp1 HG02071.hp2 NA18972.hp1 HG02071.hp1 HG02071.hp2 NA18972.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0001c0002 a0002c0003 a0001c0001 a0001c0002 a0002c0003	a0001c0001t0001 a0001c0002t0001 a0002c0003t0002 a0001c0001t0001 a0001c0002t0001 a0002c0003t0002	a0001c0001t0001g0093 a0001c0002t0001g0095 a0002c0003t0002g0094 a0001c0001t0001g0093 a0001c0002t0001g0095 a0002c0003t0002g0094	3	292	0.0103	33	c.262 others(50): Show c.262+1037_262+1038insATATATATATATATATATATATATATAT ATATA	LRCH3	ENSG00000186001.14	transcript	ENST00000425562.7	protein_coding	1/20			chr3	TogoVar
LRCH3_chr3_197786254_197893436	197792605	A A	ATATATAT others(26): Show ATATATATATATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG02135.hp2 NA18972.hp2 HG02135.hp2 NA18972.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0002c0003 a0001c0001 a0002c0003	a0001c0001t0001 a0002c0003t0031 a0001c0001t0001 a0002c0003t0031	a0001c0001t0001g0252 a0002c0003t0031g0089 a0001c0001t0001g0252 a0002c0003t0031g0089	2	292	0.0069	33	c.262 others(50): Show c.262+1065_262+1066insTATATATATATATATATATATATATATA TATAT	LRCH3	ENSG00000186001.14	transcript	ENST00000425562.7	protein_coding	1/20			chr3	TogoVar
LRCH3_chr3_197786254_197893436	197892563	C C	CTCCTCAG others(26): Show CTCCTCAGTGAGCACCCTAATTCCTTTCACTCTG	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02717.hp2 HG02886.hp1 HG03453.hp1 HG02717.hp2 HG02886.hp1 HG03453.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0035 a0001c0002t0001g0081 a0001c0002t0001g0162 a0001c0002t0001g0035 a0001c0002t0001g0081 a0001c0002t0001g0162	3	292	0.0103	33	c.88 others(44): Show c.8897_*8898insTCCTCAGTGAGCACCCTAATTCCTTTCACTCTG	LRCH3	ENSG00000186001.14	transcript	ENST00000425562.7	protein_coding		4128		chr3	TogoVar
LRCH3_chr3_197786254_197893436	197892576	A A	ACCCTAAT others(26): Show ACCCTAATTCCTTTCACTCTGTCCTCAGTGAGCG	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01168.hp1 HG01169.hp1 HG01433.hp2 others(1): Show HG01168.hp1 HG01169.hp1 HG01433.hp2 HG02698.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0055 a0001c0002t0001g0056 a0001c0002t0001g0064 others(1): Show a0001c0002t0001g0055 a0001c0002t0001g0056 a0001c0002t0001g0064 a0001c0002t0001g0101	4	292	0.0137	33	c.89 others(44): Show c.8910_*8911insCCCTAATTCCTTTCACTCTGTCCTCAGTGAGCG	LRCH3	ENSG00000186001.14	transcript	ENST00000425562.7	protein_coding		4141		chr3	TogoVar
LRFN5_chr14_41601876_41909549	41610661	T T	TAAAAAAA others(26): Show TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG01346.hp2 HG04199.hp2 HG01346.hp2 HG04199.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0002 a0001c0002t0002	a0001c0002t0002g0015 a0001c0002t0002g0016 a0001c0002t0002g0015 a0001c0002t0002g0016	2	280	0.0071	33	c.-19 others(52): Show c.-197+2121_-197+2122insAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAA	LRFN5	ENSG00000165379.14	transcript	ENST00000298119.9	protein_coding	1/5		INFO_REALIGN_3_PRIME	chr14	TogoVar
LRFN5_chr14_41601876_41909549	41734345	T T	TATATATA others(26): Show TATATATATATATATATATATATATATATATATA	intron_variant intron_variant	MODIFIER	NA18984.hp1 NA18984.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0203 a0001c0001t0001g0203	1	280	0.0036	33	c.-19 others(54): Show c.-196-32509_-196-32508insATATATATATATATATATATATAT ATATATATA	LRFN5	ENSG00000165379.14	transcript	ENST00000298119.9	protein_coding	1/5			chr14	TogoVar
LRFN5_chr14_41601876_41909549	41856675	A A	ATTATTAT others(26): Show ATTATTATTATTATTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG01496.hp1 HG01496.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0171 a0001c0001t0001g0171	1	280	0.0036	33	c.-20 others(52): Show c.-20-29929_-20-29928insATTATTATTATTTTTTTTTTTTTTTT TTTTTTT	LRFN5	ENSG00000165379.14	transcript	ENST00000298119.9	protein_coding	2/5		INFO_REALIGN_3_PRIME	chr14	TogoVar
LRIF1_chr1_110942190_110968922	110957470	C C	CAAAAAAA others(26): Show CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG02523.hp2 HG02523.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0004	a0001c0001t0004g0144 a0001c0001t0004g0144	1	446	0.0022	33	c.69- others(48): Show c.69-4656_69-4655insTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT TTT	LRIF1	ENSG00000121931.16	transcript	ENST00000369763.5	protein_coding	1/3			chr1	TogoVar
LRIT3_chr4_109843107_109877315	109850402	C C	CTTTCTTT others(26): Show CTTTCTTTCTCTTTCTTTCTTTCTTTCTTTCTTT	intron_variant intron_variant	MODIFIER	HG02970.hp1 HG02970.hp1	a0001 a0001	a0001c0004 a0001c0004	a0001c0004t0009 a0001c0004t0009	a0001c0004t0009g0198 a0001c0004t0009g0198	1	332	0.0030	33	c.117 others(50): Show c.117-1102_117-1101insTTTCTTTCTCTTTCTTTCTTTCTTTCTT TCTTT	LRIT3	ENSG00000183423.12	transcript	ENST00000594814.6	protein_coding	1/3			chr4	TogoVar
LRP11_chr6_149813757_149869359	149859396	A A	ATATATAT others(26): Show ATATATATATATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	NA19082.hp1 NA19082.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0181 a0001c0001t0001g0181	1	334	0.0030	33	c.613 others(50): Show c.613+4011_613+4012insATATATATATATATATATATATATATAT ATATA	LRP11	ENSG00000120256.11	transcript	ENST00000239367.7	protein_coding	1/6			chr6	TogoVar
LRP11_chr6_149813757_149869359	149859396	A A	ATATATAT others(26): Show ATATATATATATATATATATATATATATATATTT	intron_variant intron_variant	MODIFIER	HG02615.hp2 HG02615.hp2	a0001 a0001	a0001c0004 a0001c0004	a0001c0004t0003 a0001c0004t0003	a0001c0004t0003g0311 a0001c0004t0003g0311	1	334	0.0030	33	c.613 others(50): Show c.613+4011_613+4012insAAATATATATATATATATATATATATAT ATATA	LRP11	ENSG00000120256.11	transcript	ENST00000239367.7	protein_coding	1/6			chr6	TogoVar
LRP11_chr6_149813757_149869359	149859396	A A	ATATATAT others(26): Show ATATATATATATATATATATATATATATTTTTTT	intron_variant intron_variant	MODIFIER	HG02965.hp1 HG02965.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0227 a0001c0001t0001g0227	1	334	0.0030	33	c.613 others(50): Show c.613+4011_613+4012insAAAAAAATATATATATATATATATATAT ATATA	LRP11	ENSG00000120256.11	transcript	ENST00000239367.7	protein_coding	1/6			chr6	TogoVar
LRP11_chr6_149813757_149869359	149859396	A A	ATATATAT others(26): Show ATATATATATATATATATATATATATTTTTTTTT	intron_variant intron_variant	MODIFIER	NA18975.hp1 NA18975.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0156 a0001c0001t0001g0156	1	334	0.0030	33	c.613 others(50): Show c.613+4011_613+4012insAAAAAAAAATATATATATATATATATAT ATATA	LRP11	ENSG00000120256.11	transcript	ENST00000239367.7	protein_coding	1/6			chr6	TogoVar
LRP11_chr6_149813757_149869359	149859397	T T	TATATATA others(26): Show TATATATATATATATATATATATATATATATATA	intron_variant intron_variant	MODIFIER	HG01361.hp1 NA18954.hp2 HG01361.hp1 NA18954.hp2	a0001 a0001	a0001c0001 a0001c0008 a0001c0001 a0001c0008	a0001c0001t0001 a0001c0008t0001 a0001c0001t0001 a0001c0008t0001	a0001c0001t0001g0280 a0001c0008t0001g0203 a0001c0001t0001g0280 a0001c0008t0001g0203	2	334	0.0060	33	c.613 others(50): Show c.613+4010_613+4011insTATATATATATATATATATATATATATA TATAT	LRP11	ENSG00000120256.11	transcript	ENST00000239367.7	protein_coding	1/6			chr6	TogoVar
LRP1B_chr2_140226423_142136016	141579724	C C	CTTTTTTT others(26): Show CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG02451.hp2 HG02451.hp2	a0001 a0001	a0001c0012 a0001c0012	a0001c0012t0003 a0001c0012t0003	a0001c0012t0003g0005 a0001c0012t0003g0005	1	28	0.0357	33	c.206 others(52): Show c.206-99192_206-99191insAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAA	LRP1B	ENSG00000168702.18	transcript	ENST00000389484.8	protein_coding	2/90			chr2	TogoVar
LRP1B_chr2_140226423_142136016	141890386	A A	ACATATAT others(26): Show ACATATATATGTATTGTGTATATATATATATATG	intron_variant intron_variant	MODIFIER	NA18522.hp1 NA18522.hp1	a0001 a0001	a0001c0020 a0001c0020	a0001c0020t0007 a0001c0020t0007	a0001c0020t0007g0019 a0001c0020t0007g0019	1	28	0.0357	33	c.83- others(50): Show c.83-79986_83-79985insCATATATATATATATACACAATACATAT ATATG	LRP1B	ENSG00000168702.18	transcript	ENST00000389484.8	protein_coding	1/90			chr2	TogoVar
LRP2BP_chr4_185358872_185400924	185375487	A A	AAAAAAAT others(26): Show AAAAAAATATATATATATATATATGTATATATAT	intron_variant intron_variant	MODIFIER	HG03471.hp1 HG03471.hp1	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0102 a0001c0003t0102	a0001c0003t0102g0278 a0001c0003t0102g0278	1	348	0.0029	33	c.330 others(48): Show c.330+125_330+126insATATATATACATATATATATATATATATTT TTT	LRP2BP	ENSG00000109771.16	transcript	ENST00000505916.6	protein_coding	4/8			chr4	TogoVar
LRP2_chr2_169122109_169367534	169360128	C C	CAAAAAAA others(26): Show CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG03139.hp1 HG03139.hp1	a0012 a0012	a0012c0077 a0012c0077	a0012c0077t0001 a0012c0077t0001	a0012c0077t0001g0012 a0012c0077t0001g0012	1	250	0.0040	33	c.79+ others(48): Show c.79+2192_79+2193insTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT TTT	LRP2	ENSG00000081479.15	transcript	ENST00000649046.1	protein_coding	1/78			chr2	TogoVar
LRRC2_chr3_46510385_46571302	46561241	G G	GAAAAGGG others(26): Show GAAAAGGGGGCAGGGTGGCTGGGTGCAGTGGCTC	intron_variant intron_variant	MODIFIER	NA18989.hp2 NA18989.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0224 a0001c0001t0002g0224	1	364	0.0028	33	c.-20 others(50): Show c.-20+4935_-20+4936insGAGCCACTGCACCCAGCCACCCTGCCCC CTTTT	LRRC2	ENSG00000163827.14	transcript	ENST00000395905.8	protein_coding	1/8			chr3	TogoVar
LRRC40_chr1_70139805_70210579	70190677	T T	TAAAAAAA others(26): Show TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG00280.hp2 HG00735.hp1 HG02074.hp1 others(2): Show HG00280.hp2 HG00735.hp1 HG02074.hp1 HG03540.hp1 NA19000.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0010 a0001c0001t0001g0079 a0001c0001t0001g0127 others(1): Show a0001c0001t0001g0010 a0001c0001t0001g0079 a0001c0001t0001g0127 a0001c0001t0001g0182	5	320	0.0156	33	c.152 others(50): Show c.152-1405_152-1404insTTTTTTTTTTTTTTTTTTTTTTTTTTTT TTTTT	LRRC40	ENSG00000066557.6	transcript	ENST00000370952.4	protein_coding	1/14			chr1	TogoVar
LRRC4C_chr11_40109209_41464652	41411142	A A	ATTTTTTT others(26): Show ATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	NA20129.hp1 NA20129.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0031 a0001c0001t0001g0031	1	48	0.0208	33	c.-49 others(54): Show c.-496+48288_-496+48289insAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAA	LRRC4C	ENSG00000148948.8	transcript	ENST00000528697.6	protein_coding	1/6			chr11	TogoVar
LRRC53_chr1_74464376_74517611	74506804	T T	TTCTCCAA others(26): Show TTCTCCAAGGTTGTTTTACTGCTCCCTATGAGCA	intron_variant intron_variant	MODIFIER	NA18960.hp1 NA18960.hp1	a0003 a0003	a0003c0004 a0003c0004	a0003c0004t0001 a0003c0004t0001	a0003c0004t0001g0216 a0003c0004t0001g0216	1	342	0.0029	33	c.-27 others(50): Show c.-27+5689_-27+5721dupTGCTCATAGGGAGCAGTAAAACAACCTT GGAGA	LRRC53	ENSG00000162621.7	transcript	ENST00000294635.5	protein_coding	1/4			chr1	TogoVar
LRRC63_chr13_46206928_46282115	46255645	A A	ATATATAT others(26): Show ATATATATATATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	NA19067.hp2 NA19067.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0002 a0002c0002t0002	a0002c0002t0002g0294 a0002c0002t0002g0294	1	386	0.0026	33	c.122 others(52): Show c.1226+5154_1226+5155insTATATATATATATATATATATATATA TATATAT	LRRC63	ENSG00000173988.14	transcript	ENST00000595396.3	protein_coding	7/9			chr13	TogoVar
LRRC71_chr1_156915632_156938094	156928363	C C	CTCCTCTT others(26): Show CTCCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCT	intron_variant intron_variant	MODIFIER	NA18943.hp1 NA18984.hp1 NA18943.hp1 NA18984.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0069 a0001c0001t0001g0070 a0001c0001t0001g0069 a0001c0001t0001g0070	2	402	0.0050	33	c.996 others(48): Show c.996+361_996+362insCTCTTCTTCTTCTTCTTCTTCTTCTTCTTC TTC	LRRC71	ENSG00000160838.14	transcript	ENST00000337428.8	protein_coding	9/14		INFO_REALIGN_3_PRIME	chr1	TogoVar
LRRC71_chr1_156915632_156938094	156928363	C C	CTCTTCTT others(26): Show CTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCT	intron_variant intron_variant	MODIFIER	HG00408.hp2 HG00621.hp2 HG01123.hp2 others(28): Show HG00408.hp2 HG00621.hp2 HG01123.hp2 HG01175.hp1 HG01192.hp1 HG01256.hp2 HG01261.hp1 HG01261.hp2 HG01934.hp1 HG01952.hp1 HG02004.hp1 HG02040.hp2 HG02080.hp2 HG02165.hp1 HG02451.hp1 HG02523.hp1 HG02886.hp1 HG02886.hp2 HG03492.hp2 HG03516.hp1 HG03654.hp2 HG03831.hp1 NA19002.hp2 NA19054.hp2 NA19055.hp1 NA19060.hp2 NA19062.hp1 NA19070.hp1 NA19074.hp2 NA19079.hp1 NA19085.hp1	a0001 a0002 a0006 others(1): Show a0001 a0002 a0006 a0013	a0001c0001 a0002c0002 a0006c0008 others(1): Show a0001c0001 a0002c0002 a0006c0008 a0013c0012	a0001c0001t0001 a0002c0002t0001 a0002c0002t0003 others(3): Show a0001c0001t0001 a0002c0002t0001 a0002c0002t0003 a0002c0002t0005 a0006c0008t0001 a0013c0012t0001	a0001c0001t0001g0045 a0001c0001t0001g0048 a0001c0001t0001g0061 others(26): Show a0001c0001t0001g0045 a0001c0001t0001g0048 a0001c0001t0001g0061 a0001c0001t0001g0157 a0001c0001t0001g0193 a0001c0001t0001g0236 a0001c0001t0001g0240 a0001c0001t0001g0243 a0001c0001t0001g0244 a0001c0001t0001g0250 a0001c0001t0001g0254 a0001c0001t0001g0271 a0001c0001t0001g0272 a0001c0001t0001g0277 a0001c0001t0001g0286 a0001c0001t0001g0296 a0001c0001t0001g0304 a0001c0001t0001g0305 a0002c0002t0001g0030 a0002c0002t0001g0031 a0002c0002t0001g0133 a0002c0002t0001g0162 a0002c0002t0001g0171 a0002c0002t0001g0196 a0002c0002t0001g0224 a0002c0002t0003g0111 a0002c0002t0005g0031 a0006c0008t0001g0110 a0013c0012t0001g0045	31	402	0.0771	33	c.996 others(48): Show c.996+371_996+403dupTTCTTCTTCTTCTTCTTCTTCTTCTTCTTC TTC	LRRC71	ENSG00000160838.14	transcript	ENST00000337428.8	protein_coding	9/14		INFO_REALIGN_3_PRIME	chr1	TogoVar
LRRC71_chr1_156915632_156938094	156928404	C C	CTTCTTCT others(26): Show CTTCTTCTTCTTCTTCTTCTTCTTCTTCCTCTTA	intron_variant intron_variant	MODIFIER	HG00741.hp1 HG01433.hp2 HG02145.hp1 others(3): Show HG00741.hp1 HG01433.hp2 HG02145.hp1 HG02922.hp1 HG06807.hp2 NA18522.hp2	a0003 a0004 a0003 a0004	a0003c0004 a0004c0005 a0003c0004 a0004c0005	a0003c0004t0001 a0003c0004t0002 a0004c0005t0001 a0003c0004t0001 a0003c0004t0002 a0004c0005t0001	a0003c0004t0001g0073 a0003c0004t0001g0082 a0003c0004t0001g0136 others(2): Show a0003c0004t0001g0073 a0003c0004t0001g0082 a0003c0004t0001g0136 a0003c0004t0002g0180 a0004c0005t0001g0049	6	402	0.0149	33	c.996 others(48): Show c.996+403_996+404insTTCTTCTTCTTCTTCTTCTTCTTCCTCTTA TTC	LRRC71	ENSG00000160838.14	transcript	ENST00000337428.8	protein_coding	9/14		INFO_REALIGN_3_PRIME	chr1	TogoVar
LRRC74A_chr14_76821408_76875304	76867085	T T	TGTGTGTG others(26): Show TGTGTGTGTGTGGGGGGTGTGTGTTGGGGGTGGG	intron_variant intron_variant	MODIFIER	NA19058.hp2 NA19058.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0101 a0001c0001t0002g0101	1	408	0.0025	33	c.130 others(50): Show c.1309-242_1309-241insTGGGGTGTGTGTGTGGGGGGTGTGTGTT GGGGG	LRRC74A	ENSG00000100565.16	transcript	ENST00000689127.1	protein_coding	12/13		INFO_REALIGN_3_PRIME	chr14	TogoVar
LRRC74A_chr14_76821408_76875304	76867085	T T	TGTGTGTG others(26): Show TGTGTGTGTGTGTGGGGTGTGTGTTGGGGGTGGG	intron_variant intron_variant	MODIFIER	HG02615.hp2 HG02615.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0008 a0001c0001t0008	a0001c0001t0008g0087 a0001c0001t0008g0087	1	408	0.0025	33	c.130 others(50): Show c.1309-260_1309-259insTGGGGTGTGTGTTGGGGGTGGGGTGTGT GTGTG	LRRC74A	ENSG00000100565.16	transcript	ENST00000689127.1	protein_coding	12/13		INFO_REALIGN_3_PRIME	chr14	TogoVar
LRRC74A_chr14_76821408_76875304	76867095	T T	TGGGGTGT others(26): Show TGGGGTGTGTGTTGGGGGGTGGGGTGTGTGTGTG	intron_variant intron_variant	MODIFIER	HG00741.hp2 HG02293.hp2 NA19068.hp1 HG00741.hp2 HG02293.hp2 NA19068.hp1	a0001 a0008 a0001 a0008	a0001c0001 a0001c0020 a0008c0017 a0001c0001 a0001c0020 a0008c0017	a0001c0001t0003 a0001c0020t0001 a0008c0017t0001 a0001c0001t0003 a0001c0020t0001 a0008c0017t0001	a0001c0001t0003g0075 a0001c0020t0001g0108 a0008c0017t0001g0264 a0001c0001t0003g0075 a0001c0020t0001g0108 a0008c0017t0001g0264	3	408	0.0074	33	c.130 others(50): Show c.1309-257_1309-256insTGTGTGTTGGGGGGTGGGGTGTGTGTGT GGGGG	LRRC74A	ENSG00000100565.16	transcript	ENST00000689127.1	protein_coding	12/13		INFO_REALIGN_3_PRIME	chr14	TogoVar
LRRC74B_chr22_21040946_21069168	21046330	A A	ACCCTGAA others(26): Show ACCCTGAAATGGAATCAGAGCCGGTTTTCCTGTG	intron_variant intron_variant	MODIFIER	HG00140.hp1 HG00280.hp1 HG01106.hp1 others(6): Show HG00140.hp1 HG00280.hp1 HG01106.hp1 HG01258.hp2 HG01515.hp2 HG01934.hp1 HG02717.hp1 HG03130.hp2 HG03225.hp1	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0001 a0002c0002t0015 a0002c0002t0027 others(6): Show a0002c0002t0001 a0002c0002t0015 a0002c0002t0027 a0002c0002t0068 a0002c0002t0090 a0002c0002t0101 a0002c0002t0120 a0002c0002t0123 a0002c0002t0125	a0002c0002t0001g0247 a0002c0002t0015g0250 a0002c0002t0027g0024 others(6): Show a0002c0002t0001g0247 a0002c0002t0015g0250 a0002c0002t0027g0024 a0002c0002t0068g0251 a0002c0002t0090g0248 a0002c0002t0101g0252 a0002c0002t0120g0024 a0002c0002t0123g0249 a0002c0002t0125g0024	9	454	0.0198	33	c.139 others(48): Show c.139+215_139+216insGAATCAGAGCCGGTTTTCCTGTGCCCTGAA ATG	LRRC74B	ENSG00000187905.11	transcript	ENST00000442047.3	protein_coding	1/9		INFO_REALIGN_3_PRIME	chr22	TogoVar

Search by Variant

Search

Search Results (Total: 4928 hits)