Joint Open Genome and Omics Platform (JoGo)

Search by Variant

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Chr

Chromosome name (e.g., chr11).

Snpeff genename

Exact SnpEff gene name.

Sampleids

Target sampleid (e.g. HG02615).

Snpeff haplotype class

Haplotype-annotation class (e.g., ahapid, ahapid+chapid).

Snpeff annotation impact

Exact impact level (e.g., HIGH, MODERATE, LOW).

Snpeff annotation impact detail

Keyword match in SnpEff annotation.

Hapid

One or more haplotype IDs (comma-separated; e.g., a0001, a01, a0001c0001, a01c02, a1c2, a0001c0001t0005, a0001c0001t0005g0018).

Samplehapid

Sample haplotype IDs to include (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

No_hapid

Haplotype IDs to exclude (comma-separated; e.g., a0001, a0002, a0001c0001, a0001c0001t0005, a1, a01).

No_samplehapid

Sample haplotype IDs to exclude (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

Start

Start position (GRCh38).

End

End position (GRCh38).

Minac

Minimum alternate allele count (≥).

Maxac

Maximum alternate allele count (≤).

Minlen

Minimum variant length (≥).

Maxlen

Maximum variant length (≤).

Sort By

Select column to sort.

Order by

Ascending or descending.

Show

Results per page.

regionname	pos	ref	alt	annotation	impact	samples	ahapids	achapids	acthapids	actghapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	external
TCF3_chr19_1604292_1657615	1628255	G G	GGGGGTGA others(26): Show GGGGGTGAGGCGGGAAGGGGACAGCAGAGCTCAC	intron_variant intron_variant	MODIFIER	HG02809.hp1 HG02809.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0002 a0001c0002t0002	a0001c0002t0002g0267 a0001c0002t0002g0267	1	352	0.0028	33	c.299 others(48): Show c.299-862_299-830dupGTGAGCTCTGCTGTCCCCTTCCCGCCTCAC CCC	TCF3	ENSG00000071564.19	transcript	ENST00000262965.12	protein_coding	5/18			chr19	TogoVar
TCF3_chr19_1604292_1657615	1628255	G G	GGGGGTGG others(26): Show GGGGGTGGGGCGGGAAGGGGACAGCAGAGCTCAC	intron_variant intron_variant	MODIFIER	HG00642.hp2 HG01070.hp2 HG00642.hp2 HG01070.hp2	a0002 a0002	a0002c0001 a0002c0001	a0002c0001t0016 a0002c0001t0016	a0002c0001t0016g0052 a0002c0001t0016g0269 a0002c0001t0016g0052 a0002c0001t0016g0269	2	352	0.0057	33	c.299 others(48): Show c.299-830_299-829insGTGAGCTCTGCTGTCCCCTTCCCGCCCCAC CCC	TCF3	ENSG00000071564.19	transcript	ENST00000262965.12	protein_coding	5/18			chr19	TogoVar
TCF3_chr19_1604292_1657615	1628295	A A	AGGCGGGA others(26): Show AGGCGGGAAGGGGACAGCAGAGCTCACGGGGTGG	intron_variant intron_variant	MODIFIER	HG02809.hp2 HG02809.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0111 a0001c0002t0001g0111	1	352	0.0028	33	c.299 others(48): Show c.299-870_299-869insCCACCCCGTGAGCTCTGCTGTCCCCTTCCC GCC	TCF3	ENSG00000071564.19	transcript	ENST00000262965.12	protein_coding	5/18			chr19	TogoVar
TCF3_chr19_1604292_1657615	1628323	G G	GGGGGTGA others(26): Show GGGGGTGAGGCGGGAAGGGGACAGCAGAACTCAC	intron_variant intron_variant	MODIFIER	HG02723.hp2 HG02723.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0013 a0001c0002t0013	a0001c0002t0013g0182 a0001c0002t0013g0182	1	352	0.0028	33	c.299 others(48): Show c.299-898_299-897insGTGAGTTCTGCTGTCCCCTTCCCGCCTCAC CCC	TCF3	ENSG00000071564.19	transcript	ENST00000262965.12	protein_coding	5/18			chr19	TogoVar
TCF3_chr19_1604292_1657615	1628323	G G	GGGGGTGA others(26): Show GGGGGTGAGGCGGGAAGGGGACAGCAGAACTCAT	intron_variant intron_variant	MODIFIER	HG01074.hp1 HG01257.hp2 HG01975.hp2 others(1): Show HG01074.hp1 HG01257.hp2 HG01975.hp2 HG02738.hp2	a0001 a0001	a0001c0004 a0001c0004	a0001c0004t0003 a0001c0004t0011 a0001c0004t0081 a0001c0004t0003 a0001c0004t0011 a0001c0004t0081	a0001c0004t0003g0153 a0001c0004t0011g0136 a0001c0004t0011g0137 others(1): Show a0001c0004t0003g0153 a0001c0004t0011g0136 a0001c0004t0011g0137 a0001c0004t0081g0302	4	352	0.0114	33	c.299 others(48): Show c.299-898_299-897insATGAGTTCTGCTGTCCCCTTCCCGCCTCAC CCC	TCF3	ENSG00000071564.19	transcript	ENST00000262965.12	protein_coding	5/18			chr19	TogoVar
TCF3_chr19_1604292_1657615	1628327	A A	ATGAGGCG others(26): Show ATGAGGCGGGAAGGGGACAGCAGAACTCACGGGG	intron_variant intron_variant	MODIFIER	HG01168.hp2 HG01168.hp2	a0018 a0018	a0018c0018 a0018c0018	a0018c0018t0001 a0018c0018t0001	a0018c0018t0001g0164 a0018c0018t0001g0164	1	352	0.0028	33	c.299 others(48): Show c.299-902_299-901insCCCCGTGAGTTCTGCTGTCCCCTTCCCGCC TCA	TCF3	ENSG00000071564.19	transcript	ENST00000262965.12	protein_coding	5/18			chr19	TogoVar
TCF3_chr19_1604292_1657615	1628327	A A	ATGAGGCG others(26): Show ATGAGGCGGGAAGGGGACAGCAGAGCTCACGGGG	intron_variant intron_variant	MODIFIER	HG02486.hp1 HG02486.hp1	a0003 a0003	a0003c0011 a0003c0011	a0003c0011t0063 a0003c0011t0063	a0003c0011t0063g0093 a0003c0011t0063g0093	1	352	0.0028	33	c.299 others(48): Show c.299-902_299-901insCCCCGTGAGCTCTGCTGTCCCCTTCCCGCC TCA	TCF3	ENSG00000071564.19	transcript	ENST00000262965.12	protein_coding	5/18			chr19	TogoVar
TCF3_chr19_1604292_1657615	1628333	C C	CGGGAAGG others(26): Show CGGGAAGGGGACAGCAGAGCTCACGGGGTGAGGT	intron_variant intron_variant	MODIFIER	NA18747.hp1 NA19085.hp2 NA18747.hp1 NA19085.hp2	a0001 a0002 a0001 a0002	a0001c0005 a0002c0001 a0001c0005 a0002c0001	a0001c0005t0038 a0002c0001t0007 a0001c0005t0038 a0002c0001t0007	a0001c0005t0038g0025 a0002c0001t0007g0070 a0001c0005t0038g0025 a0002c0001t0007g0070	2	352	0.0057	33	c.299 others(48): Show c.299-908_299-907insACCTCACCCCGTGAGCTCTGCTGTCCCCTT CCC	TCF3	ENSG00000071564.19	transcript	ENST00000262965.12	protein_coding	5/18			chr19	TogoVar
TCF3_chr19_1604292_1657615	1628336	G G	GAAGGGGA others(26): Show GAAGGGGACAGCAGAACTCACGGGGTGAGGCGGA	intron_variant intron_variant	MODIFIER	HG00099.hp1 HG00099.hp1	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0001 a0001c0003t0001	a0001c0003t0001g0165 a0001c0003t0001g0165	1	352	0.0028	33	c.299 others(48): Show c.299-911_299-910insTCCGCCTCACCCCGTGAGTTCTGCTGTCCC CTT	TCF3	ENSG00000071564.19	transcript	ENST00000262965.12	protein_coding	5/18			chr19	TogoVar
TCF3_chr19_1604292_1657615	1628355	A A	ACGGGGGG others(26): Show ACGGGGGGTGAGGCGGGAAGGGGACAGCAGAGCT	intron_variant intron_variant	MODIFIER	HG02622.hp2 HG02622.hp2	a0010 a0010	a0010c0023 a0010c0023	a0010c0023t0051 a0010c0023t0051	a0010c0023t0051g0140 a0010c0023t0051g0140	1	352	0.0028	33	c.299 others(48): Show c.299-930_299-929insAGCTCTGCTGTCCCCTTCCCGCCTCACCCC CCG	TCF3	ENSG00000071564.19	transcript	ENST00000262965.12	protein_coding	5/18			chr19	TogoVar
TCF3_chr19_1604292_1657615	1628356	C C	CGGGGATG others(26): Show CGGGGATGAGGCGGGAAGGGGACAGCAGAGCTCA	intron_variant intron_variant	MODIFIER	HG04228.hp2 HG04228.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0041 a0001c0002t0041	a0001c0002t0041g0004 a0001c0002t0041g0004	1	352	0.0028	33	c.299 others(48): Show c.299-931_299-930insTGAGCTCTGCTGTCCCCTTCCCGCCTCATC CCC	TCF3	ENSG00000071564.19	transcript	ENST00000262965.12	protein_coding	5/18			chr19	TogoVar
TCF3_chr19_1604292_1657615	1628356	C C	CGGGGGTG others(26): Show CGGGGGTGAGGCGGGAAGGGGACAGCAGAGCTCA	intron_variant intron_variant	MODIFIER	HG00642.hp2 HG01070.hp2 HG00642.hp2 HG01070.hp2	a0002 a0002	a0002c0001 a0002c0001	a0002c0001t0016 a0002c0001t0016	a0002c0001t0016g0052 a0002c0001t0016g0269 a0002c0001t0016g0052 a0002c0001t0016g0269	2	352	0.0057	33	c.299 others(48): Show c.299-931_299-930insTGAGCTCTGCTGTCCCCTTCCCGCCTCACC CCC	TCF3	ENSG00000071564.19	transcript	ENST00000262965.12	protein_coding	5/18			chr19	TogoVar
TCF3_chr19_1604292_1657615	1628356	C C	CGGGGGTG others(26): Show CGGGGGTGGGGCGGGAAGGGGACAGCAGAGCTCA	intron_variant intron_variant	MODIFIER	HG03225.hp2 HG03225.hp2	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0002 a0001c0003t0002	a0001c0003t0002g0253 a0001c0003t0002g0253	1	352	0.0028	33	c.299 others(48): Show c.299-931_299-930insTGAGCTCTGCTGTCCCCTTCCCGCCCCACC CCC	TCF3	ENSG00000071564.19	transcript	ENST00000262965.12	protein_coding	5/18			chr19	TogoVar
TCF3_chr19_1604292_1657615	1628424	C C	CGGGGGTG others(26): Show CGGGGGTGAGGCGGGAAGGGGACAGCAGAGCTCA	intron_variant intron_variant	MODIFIER	NA19064.hp2 NA19064.hp2	a0002 a0002	a0002c0001 a0002c0001	a0002c0001t0022 a0002c0001t0022	a0002c0001t0022g0310 a0002c0001t0022g0310	1	352	0.0028	33	c.299 others(48): Show c.299-999_299-998insTGAGCTCTGCTGTCCCCTTCCCGCCTCACC CCC	TCF3	ENSG00000071564.19	transcript	ENST00000262965.12	protein_coding	5/18			chr19	TogoVar
TCF3_chr19_1604292_1657615	1628426	G G	GGGGGTGA others(26): Show GGGGGTGAGGCGGGAAAGGGACAGCAGAACTCAC	intron_variant intron_variant	MODIFIER	HG02056.hp2 HG02056.hp2	a0003 a0003	a0003c0006 a0003c0006	a0003c0006t0012 a0003c0006t0012	a0003c0006t0012g0314 a0003c0006t0012g0314	1	352	0.0028	33	c.299 others(50): Show c.299-1001_299-1000insGTGAGTTCTGCTGTCCCTTTCCCGCCTC ACCCC	TCF3	ENSG00000071564.19	transcript	ENST00000262965.12	protein_coding	5/18			chr19	TogoVar
TCF3_chr19_1604292_1657615	1628426	G G	GGGGGTGA others(26): Show GGGGGTGAGGCGGGAAGGGGACAGCAGAACTCAC	intron_variant intron_variant	MODIFIER	HG01168.hp1 HG01169.hp2 HG01168.hp1 HG01169.hp2	a0001 a0001	a0001c0004 a0001c0004	a0001c0004t0008 a0001c0004t0008	a0001c0004t0008g0248 a0001c0004t0008g0252 a0001c0004t0008g0248 a0001c0004t0008g0252	2	352	0.0057	33	c.299 others(50): Show c.299-1001_299-1000insGTGAGTTCTGCTGTCCCCTTCCCGCCTC ACCCC	TCF3	ENSG00000071564.19	transcript	ENST00000262965.12	protein_coding	5/18			chr19	TogoVar
TCF3_chr19_1604292_1657615	1628436	C C	CGGGAAGG others(26): Show CGGGAAGGGGACAGCAGAGCTCACGGGGTGAGGT	intron_variant intron_variant	MODIFIER	NA19081.hp2 NA19081.hp2	a0001 a0001	a0001c0005 a0001c0005	a0001c0005t0009 a0001c0005t0009	a0001c0005t0009g0021 a0001c0005t0009g0021	1	352	0.0028	33	c.299 others(50): Show c.299-1011_299-1010insACCTCACCCCGTGAGCTCTGCTGTCCCC TTCCC	TCF3	ENSG00000071564.19	transcript	ENST00000262965.12	protein_coding	5/18			chr19	TogoVar
TCF3_chr19_1604292_1657615	1628439	A A	AAAGGGGA others(26): Show AAAGGGGACAGCAGAGCTCACGGGGTGAGGCGGG	intron_variant intron_variant	MODIFIER	NA20129.hp1 NA20129.hp1	a0001 a0001	a0001c0004 a0001c0004	a0001c0004t0008 a0001c0004t0008	a0001c0004t0008g0251 a0001c0004t0008g0251	1	352	0.0028	33	c.299 others(50): Show c.299-1014_299-1013insCCCGCCTCACCCCGTGAGCTCTGCTGTC CCCTT	TCF3	ENSG00000071564.19	transcript	ENST00000262965.12	protein_coding	5/18			chr19	TogoVar
TCF3_chr19_1604292_1657615	1628461	G G	GGGGGTGA others(26): Show GGGGGTGAGGCGGGAAGGGGACAGCAGAACTCAC	intron_variant intron_variant	MODIFIER	NA19074.hp2 NA19074.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0002 a0001c0002t0002	a0001c0002t0002g0222 a0001c0002t0002g0222	1	352	0.0028	33	c.299 others(50): Show c.299-1036_299-1035insGTGAGTTCTGCTGTCCCCTTCCCGCCTC ACCCC	TCF3	ENSG00000071564.19	transcript	ENST00000262965.12	protein_coding	5/18			chr19	TogoVar
TCF3_chr19_1604292_1657615	1628465	A A	ATGAGGCG others(26): Show ATGAGGCGGGAAGGGGACAGCAGAACTCACGGGG	intron_variant intron_variant	MODIFIER	NA21309.hp1 NA21309.hp1	a0001 a0001	a0001c0005 a0001c0005	a0001c0005t0030 a0001c0005t0030	a0001c0005t0030g0192 a0001c0005t0030g0192	1	352	0.0028	33	c.299 others(50): Show c.299-1040_299-1039insCCCCGTGAGTTCTGCTGTCCCCTTCCCG CCTCA	TCF3	ENSG00000071564.19	transcript	ENST00000262965.12	protein_coding	5/18			chr19	TogoVar
TCF3_chr19_1604292_1657615	1628485	C C	CAGAGCTC others(26): Show CAGAGCTCACGGGGTGAGGCGGGAAGGGGACAGT	intron_variant intron_variant	MODIFIER	NA18977.hp1 NA18977.hp1	a0001 a0001	a0001c0005 a0001c0005	a0001c0005t0004 a0001c0005t0004	a0001c0005t0004g0026 a0001c0005t0004g0026	1	352	0.0028	33	c.299 others(50): Show c.299-1060_299-1059insACTGTCCCCTTCCCGCCTCACCCCGTGA GCTCT	TCF3	ENSG00000071564.19	transcript	ENST00000262965.12	protein_coding	5/18			chr19	TogoVar
TCF3_chr19_1604292_1657615	1628496	G G	GGGGATGA others(26): Show GGGGATGAGGCGGGAAGGGGACAGCAGAACTCAC	intron_variant intron_variant	MODIFIER	HG01109.hp1 HG01109.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0046 a0001c0002t0046	a0001c0002t0046g0039 a0001c0002t0046g0039	1	352	0.0028	33	c.299 others(50): Show c.299-1071_299-1070insGTGAGTTCTGCTGTCCCCTTCCCGCCTC ATCCC	TCF3	ENSG00000071564.19	transcript	ENST00000262965.12	protein_coding	5/18			chr19	TogoVar
TCF3_chr19_1604292_1657615	1628530	G G	GGGGATGG others(26): Show GGGGATGGGGCGGGAAGGGGACAGAAGAGCTCAC	intron_variant intron_variant	MODIFIER	NA19065.hp1 NA19065.hp1	a0003 a0003	a0003c0006 a0003c0006	a0003c0006t0001 a0003c0006t0001	a0003c0006t0001g0115 a0003c0006t0001g0115	1	352	0.0028	33	c.299 others(50): Show c.299-1105_299-1104insGTGAGCTCTTCTGTCCCCTTCCCGCCCC ATCCC	TCF3	ENSG00000071564.19	transcript	ENST00000262965.12	protein_coding	5/18			chr19	TogoVar
TCF3_chr19_1604292_1657615	1628597	C C	CGGGGGTG others(26): Show CGGGGGTGGGGCGGGAAGGGGACAGCAGAACTCA	intron_variant intron_variant	MODIFIER	HG02280.hp1 HG02280.hp1	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0001 a0001c0003t0001	a0001c0003t0001g0255 a0001c0003t0001g0255	1	352	0.0028	33	c.299 others(50): Show c.299-1172_299-1171insTGAGTTCTGCTGTCCCCTTCCCGCCCCA CCCCC	TCF3	ENSG00000071564.19	transcript	ENST00000262965.12	protein_coding	5/18			chr19	TogoVar
TCF3_chr19_1604292_1657615	1628599	G G	GGGGATGA others(26): Show GGGGATGAGGCGGGAAGGGGACAGCAGAGCTCAC	intron_variant intron_variant	MODIFIER	HG03130.hp1 HG03130.hp1	a0001 a0001	a0001c0005 a0001c0005	a0001c0005t0027 a0001c0005t0027	a0001c0005t0027g0193 a0001c0005t0027g0193	1	352	0.0028	33	c.299 others(50): Show c.299-1174_299-1173insGTGAGCTCTGCTGTCCCCTTCCCGCCTC ATCCC	TCF3	ENSG00000071564.19	transcript	ENST00000262965.12	protein_coding	5/18			chr19	TogoVar
TCF3_chr19_1604292_1657615	1628599	G G	GGGGGTGA others(26): Show GGGGGTGAGGCGGGAAAGGGACAGCAGAGCTCAC	intron_variant intron_variant	MODIFIER	HG00639.hp1 HG00642.hp1 HG00639.hp1 HG00642.hp1	a0001 a0001	a0001c0004 a0001c0004	a0001c0004t0003 a0001c0004t0008 a0001c0004t0003 a0001c0004t0008	a0001c0004t0003g0099 a0001c0004t0008g0097 a0001c0004t0003g0099 a0001c0004t0008g0097	2	352	0.0057	33	c.299 others(50): Show c.299-1174_299-1173insGTGAGCTCTGCTGTCCCTTTCCCGCCTC ACCCC	TCF3	ENSG00000071564.19	transcript	ENST00000262965.12	protein_coding	5/18			chr19	TogoVar
TCF3_chr19_1604292_1657615	1628667	G G	GGGGGTGA others(26): Show GGGGGTGAGGTGGGAAGGGGACAGCAGAACTCAC	intron_variant intron_variant	MODIFIER	HG00408.hp2 HG00408.hp2	a0001 a0001	a0001c0004 a0001c0004	a0001c0004t0102 a0001c0004t0102	a0001c0004t0102g0344 a0001c0004t0102g0344	1	352	0.0028	33	c.299 others(50): Show c.299-1242_299-1241insGTGAGTTCTGCTGTCCCCTTCCCACCTC ACCCC	TCF3	ENSG00000071564.19	transcript	ENST00000262965.12	protein_coding	5/18			chr19	TogoVar
TCF3_chr19_1604292_1657615	1628702	G G	GGGGGTGA others(26): Show GGGGGTGAGGCGGGAAGGGGACAGCAGAACTCAC	intron_variant intron_variant	MODIFIER	NA20300.hp2 NA20300.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0173 a0001c0002t0001g0173	1	352	0.0028	33	c.299 others(50): Show c.299-1277_299-1276insGTGAGTTCTGCTGTCCCCTTCCCGCCTC ACCCC	TCF3	ENSG00000071564.19	transcript	ENST00000262965.12	protein_coding	5/18			chr19	TogoVar
TCF3_chr19_1604292_1657615	1628706	A A	ATGAGGCG others(26): Show ATGAGGCGGGAAGGGGACAGCAGAGCTCACGGGG	intron_variant intron_variant	MODIFIER	NA19012.hp1 NA19055.hp2 NA19078.hp2 NA19012.hp1 NA19055.hp2 NA19078.hp2	a0001 a0008 a0011 a0001 a0008 a0011	a0001c0002 a0008c0032 a0011c0031 a0001c0002 a0008c0032 a0011c0031	a0001c0002t0001 a0008c0032t0061 a0011c0031t0048 a0001c0002t0001 a0008c0032t0061 a0011c0031t0048	a0001c0002t0001g0212 a0008c0032t0061g0211 a0011c0031t0048g0043 a0001c0002t0001g0212 a0008c0032t0061g0211 a0011c0031t0048g0043	3	352	0.0085	33	c.299 others(50): Show c.299-1281_299-1280insCCCCGTGAGCTCTGCTGTCCCCTTCCCG CCTCA	TCF3	ENSG00000071564.19	transcript	ENST00000262965.12	protein_coding	5/18			chr19	TogoVar
TCF3_chr19_1604292_1657615	1628737	G G	GGGGGTGA others(26): Show GGGGGTGAGGCGGGAAGGGGACAGCAGAACTCAC	intron_variant intron_variant	MODIFIER	NA19057.hp2 NA19057.hp2	a0002 a0002	a0002c0001 a0002c0001	a0002c0001t0006 a0002c0001t0006	a0002c0001t0006g0072 a0002c0001t0006g0072	1	352	0.0028	33	c.299 others(50): Show c.299-1312_299-1311insGTGAGTTCTGCTGTCCCCTTCCCGCCTC ACCCC	TCF3	ENSG00000071564.19	transcript	ENST00000262965.12	protein_coding	5/18			chr19	TogoVar
TCF3_chr19_1604292_1657615	1628737	G G	GGGGGTGA others(26): Show GGGGGTGAGGCGGGAAGGGGACAGCAGAGCTCAC	intron_variant intron_variant	MODIFIER	HG02071.hp2 HG02071.hp2	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0005 a0001c0003t0005	a0001c0003t0005g0325 a0001c0003t0005g0325	1	352	0.0028	33	c.299 others(50): Show c.299-1344_299-1312dupGTGAGCTCTGCTGTCCCCTTCCCGCCTC ACCCC	TCF3	ENSG00000071564.19	transcript	ENST00000262965.12	protein_coding	5/18			chr19	TogoVar
TCF3_chr19_1604292_1657615	1628747	C C	CGGGAAGG others(26): Show CGGGAAGGGGACAGCAGAGCTCACGGGGTGAGGT	intron_variant intron_variant	MODIFIER	HG01099.hp2 HG01099.hp2	a0001 a0001	a0001c0004 a0001c0004	a0001c0004t0008 a0001c0004t0008	a0001c0004t0008g0100 a0001c0004t0008g0100	1	352	0.0028	33	c.299 others(50): Show c.299-1322_299-1321insACCTCACCCCGTGAGCTCTGCTGTCCCC TTCCC	TCF3	ENSG00000071564.19	transcript	ENST00000262965.12	protein_coding	5/18			chr19	TogoVar
TCF3_chr19_1604292_1657615	1628779	A A	AGGTGGGA others(26): Show AGGTGGGAAGGGGACAGCAGAGCTCACGGGGTGG	intron_variant intron_variant	MODIFIER	HG02109.hp2 HG02109.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0198 a0001c0002t0001g0198	1	352	0.0028	33	c.299 others(50): Show c.299-1354_299-1353insCCACCCCGTGAGCTCTGCTGTCCCCTTC CCACC	TCF3	ENSG00000071564.19	transcript	ENST00000262965.12	protein_coding	5/18			chr19	TogoVar
TCF3_chr19_1604292_1657615	1629106	G G	GGGGATGG others(26): Show GGGGATGGGGTGGGAAGGGGACAGCAGAGCTCAC	intron_variant intron_variant	MODIFIER	HG00621.hp1 HG02559.hp1 NA18963.hp2 HG00621.hp1 HG02559.hp1 NA18963.hp2	a0001 a0002 a0001 a0002	a0001c0002 a0002c0001 a0001c0002 a0002c0001	a0001c0002t0001 a0002c0001t0006 a0002c0001t0022 a0001c0002t0001 a0002c0001t0006 a0002c0001t0022	a0001c0002t0001g0138 a0002c0001t0006g0075 a0002c0001t0022g0318 a0001c0002t0001g0138 a0002c0001t0006g0075 a0002c0001t0022g0318	3	352	0.0085	33	c.299 others(50): Show c.299-1681_299-1680insGTGAGCTCTGCTGTCCCCTTCCCACCCC ATCCC	TCF3	ENSG00000071564.19	transcript	ENST00000262965.12	protein_coding	5/18			chr19	TogoVar
TCF3_chr19_1604292_1657615	1654962	A A	ACTTCTTC others(26): Show ACTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTT	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00639.hp2 HG02015.hp2 HG02273.hp1 others(3): Show HG00639.hp2 HG02015.hp2 HG02273.hp1 HG03492.hp1 NA18945.hp1 NA18964.hp2	a0001 a0002 a0001 a0002	a0001c0002 a0001c0003 a0002c0001 a0001c0002 a0001c0003 a0002c0001	a0001c0002t0001 a0001c0002t0002 a0001c0003t0001 others(3): Show a0001c0002t0001 a0001c0002t0002 a0001c0003t0001 a0001c0003t0002 a0002c0001t0006 a0002c0001t0029	a0001c0002t0001g0078 a0001c0002t0002g0143 a0001c0003t0001g0228 others(3): Show a0001c0002t0001g0078 a0001c0002t0002g0143 a0001c0003t0001g0228 a0001c0003t0002g0229 a0002c0001t0006g0068 a0002c0001t0029g0156	6	352	0.0171	33	c.-27 others(44): Show c.-2703_-2702insAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAG	TCF3	ENSG00000071564.19	transcript	ENST00000262965.12	protein_coding		2348		chr19	TogoVar
TCF3_chr19_1604292_1657615	1654996	C C	CTTCTTCT others(26): Show CTTCTTCTTCTTATTATTATTATTATTATTATTA	upstream_gene_variant upstream_gene_variant	MODIFIER	HG03704.hp2 HG03704.hp2	a0001 a0001	a0001c0005 a0001c0005	a0001c0005t0040 a0001c0005t0040	a0001c0005t0040g0006 a0001c0005t0040g0006	1	352	0.0028	33	c.-27 others(44): Show c.-2737_-2736insTAATAATAATAATAATAATAATAAGAAGAAGAA	TCF3	ENSG00000071564.19	transcript	ENST00000262965.12	protein_coding		2382		chr19	TogoVar
TCF3_chr19_1604292_1657615	1654996	C C	CTTCTTCT others(26): Show CTTCTTCTTCTTCTTATTATTATTATTATTATTA	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01884.hp1 HG01884.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0036 a0001c0002t0036	a0001c0002t0036g0348 a0001c0002t0036g0348	1	352	0.0028	33	c.-27 others(44): Show c.-2737_-2736insTAATAATAATAATAATAATAAGAAGAAGAAGAA	TCF3	ENSG00000071564.19	transcript	ENST00000262965.12	protein_coding		2382		chr19	TogoVar
TCF3_chr19_1604292_1657615	1654996	C C	CTTCTTCT others(26): Show CTTCTTCTTCTTCTTCTTATTATTATTATTATTA	upstream_gene_variant upstream_gene_variant	MODIFIER	HG03453.hp2 HG03579.hp1 HG03453.hp2 HG03579.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0002 a0001c0002t0075 a0001c0002t0002 a0001c0002t0075	a0001c0002t0002g0175 a0001c0002t0075g0185 a0001c0002t0002g0175 a0001c0002t0075g0185	2	352	0.0057	33	c.-27 others(44): Show c.-2737_-2736insTAATAATAATAATAATAAGAAGAAGAAGAAGAA	TCF3	ENSG00000071564.19	transcript	ENST00000262965.12	protein_coding		2382		chr19	TogoVar
TCF3_chr19_1604292_1657615	1654996	C C	CTTCTTCT others(26): Show CTTCTTCTTCTTCTTCTTCTTCTTATTATTATTA	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02257.hp1 HG02809.hp1 HG02257.hp1 HG02809.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0002 a0001c0002t0065 a0001c0002t0002 a0001c0002t0065	a0001c0002t0002g0267 a0001c0002t0065g0176 a0001c0002t0002g0267 a0001c0002t0065g0176	2	352	0.0057	33	c.-27 others(44): Show c.-2737_-2736insTAATAATAATAAGAAGAAGAAGAAGAAGAAGAA	TCF3	ENSG00000071564.19	transcript	ENST00000262965.12	protein_coding		2382		chr19	TogoVar
TCF3_chr19_1604292_1657615	1654996	C C	CTTCTTCT others(26): Show CTTCTTCTTCTTCTTCTTCTTCTTCTTATTATTA	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01256.hp2 HG02896.hp2 HG02897.hp1 HG01256.hp2 HG02896.hp2 HG02897.hp1	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0001 a0001c0003t0009 a0001c0003t0001 a0001c0003t0009	a0001c0003t0001g0200 a0001c0003t0001g0201 a0001c0003t0009g0007 a0001c0003t0001g0200 a0001c0003t0001g0201 a0001c0003t0009g0007	3	352	0.0085	33	c.-27 others(44): Show c.-2737_-2736insTAATAATAAGAAGAAGAAGAAGAAGAAGAAGAA	TCF3	ENSG00000071564.19	transcript	ENST00000262965.12	protein_coding		2382		chr19	TogoVar
TCF3_chr19_1604292_1657615	1654996	C C	CTTCTTCT others(26): Show CTTCTTCTTCTTCTTCTTCTTCTTCTTCTTATTA	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00099.hp1 HG00099.hp1	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0001 a0001c0003t0001	a0001c0003t0001g0165 a0001c0003t0001g0165	1	352	0.0028	33	c.-27 others(44): Show c.-2737_-2736insTAATAAGAAGAAGAAGAAGAAGAAGAAGAAGAA	TCF3	ENSG00000071564.19	transcript	ENST00000262965.12	protein_coding		2382		chr19	TogoVar
TCF3_chr19_1604292_1657615	1654996	C C	CTTCTTCT others(26): Show CTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTA	upstream_gene_variant upstream_gene_variant	MODIFIER	NA18950.hp2 NA18969.hp1 NA18950.hp2 NA18969.hp1	a0002 a0002	a0002c0001 a0002c0001	a0002c0001t0054 a0002c0001t0064 a0002c0001t0054 a0002c0001t0064	a0002c0001t0054g0157 a0002c0001t0064g0053 a0002c0001t0054g0157 a0002c0001t0064g0053	2	352	0.0057	33	c.-27 others(44): Show c.-2737_-2736insTAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAA	TCF3	ENSG00000071564.19	transcript	ENST00000262965.12	protein_coding		2382		chr19	TogoVar
TCF7L1_chr2_85128392_85315387	85153340	A A	ATATTTTT others(26): Show ATATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG03195.hp2 HG03195.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0001 a0002c0002t0001	a0002c0002t0001g0009 a0002c0002t0001g0009	1	236	0.0042	33	c.441 others(52): Show c.441+18891_441+18892insATTTTTTTTTTTTTTTTTTTTTTTTT TTTTTTT	TCF7L1	ENSG00000152284.5	transcript	ENST00000282111.4	protein_coding	3/11		INFO_REALIGN_3_PRIME	chr2	TogoVar
TCF7L1_chr2_85128392_85315387	85299860	A A	ACACACAC others(26): Show ACACACACACACACACACACACACACACACACAC	intron_variant intron_variant	MODIFIER	NA18967.hp1 NA19011.hp1 NA18967.hp1 NA19011.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0001 a0001c0001t0002	a0001c0001t0001g0144 a0001c0001t0002g0119 a0001c0001t0001g0144 a0001c0001t0002g0119	2	236	0.0085	33	c.526 others(50): Show c.526-2624_526-2623insCACACACACACACACACACACACACACA CACAC	TCF7L1	ENSG00000152284.5	transcript	ENST00000282111.4	protein_coding	4/11			chr2	TogoVar
TCF7L2_chr10_112945247_113172678	112964745	G G	GTGGTGGT others(26): Show GTGGTGGTGGTGGTGATGGTGGTGGTGGTGGTGA	intron_variant intron_variant	MODIFIER	HG00597.hp1 HG00735.hp2 HG02735.hp1 others(6): Show HG00597.hp1 HG00735.hp2 HG02735.hp1 HG03704.hp1 NA18950.hp2 NA18964.hp1 NA19063.hp1 NA19063.hp2 NA19066.hp1	a0001 a0002 a0009 a0001 a0002 a0009	a0001c0001 a0002c0002 a0009c0007 a0001c0001 a0002c0002 a0009c0007	a0001c0001t0001 a0001c0001t0007 a0002c0002t0001 others(2): Show a0001c0001t0001 a0001c0001t0007 a0002c0002t0001 a0002c0002t0007 a0009c0007t0001	a0001c0001t0001g0018 a0001c0001t0001g0034 a0001c0001t0001g0190 others(6): Show a0001c0001t0001g0018 a0001c0001t0001g0034 a0001c0001t0001g0190 a0001c0001t0001g0193 a0001c0001t0001g0194 a0001c0001t0007g0085 a0002c0002t0001g0200 a0002c0002t0007g0030 a0009c0007t0001g0025	9	200	0.0450	33	c.450 others(48): Show c.450+154_450+186dupATGGTGGTGGTGGTGATGGTGGTGGTGGTG GTG	TCF7L2	ENSG00000148737.18	transcript	ENST00000355995.9	protein_coding	4/14		INFO_REALIGN_3_PRIME	chr10	TogoVar
TCF7L2_chr10_112945247_113172678	112966209	T T	TATATATA others(26): Show TATATATATATATATATATATATATATATATATA	intron_variant intron_variant	MODIFIER	HG02738.hp2 HG02738.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0005 a0001c0001t0005	a0001c0001t0005g0199 a0001c0001t0005g0199	1	200	0.0050	33	c.450 others(50): Show c.450+1587_450+1588insATATATATATATATATATATATATATAT ATAAT	TCF7L2	ENSG00000148737.18	transcript	ENST00000355995.9	protein_coding	4/14		INFO_REALIGN_3_PRIME	chr10	TogoVar
TCHHL1_chr1_152079141_152094064	152082782	T T	TATATATA others(26): Show TATATATATATATATATATATATATATATATATA	downstream_gene_variant downstream_gene_variant	MODIFIER	NA19060.hp2 NA19060.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0001 a0001c0001t0001g0001	1	376	0.0027	33	c.21 others(44): Show c.2184_*2185insTATATATATATATATATATATATATATATATAT	TCHHL1	ENSG00000182898.4	transcript	ENST00000368806.2	protein_coding		1358		chr1	TogoVar
TCP11L2_chr12_106297733_106352003	106302320	C C	CCCCCCGC others(26): Show CCCCCCGCTCAGCCCCCGCTCAGCCCCCGCTCAG	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01081.hp1 HG02258.hp1 HG02523.hp1 others(3): Show HG01081.hp1 HG02258.hp1 HG02523.hp1 HG02559.hp2 NA18944.hp2 NA18947.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0002c0002 a0001c0001 a0002c0002	a0001c0001t0003 a0001c0001t0004 a0002c0002t0001 a0001c0001t0003 a0001c0001t0004 a0002c0002t0001	a0001c0001t0003g0007 a0001c0001t0003g0147 a0001c0001t0003g0150 others(3): Show a0001c0001t0003g0007 a0001c0001t0003g0147 a0001c0001t0003g0150 a0001c0001t0004g0233 a0002c0002t0001g0003 a0002c0002t0001g0060	6	344	0.0174	33	c.-65 others(42): Show c.-657_-656insCCCCCGCTCAGCCCCCGCTCAGCCCCCGCTCAG	TCP11L2	ENSG00000166046.11	transcript	ENST00000299045.8	protein_coding		412		chr12	TogoVar
TDP2_chr6_24644979_24671899	24648659	G G	GAAAAAAA others(26): Show GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00544.hp1 HG01981.hp1 HG02004.hp1 HG00544.hp1 HG01981.hp1 HG02004.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0002 a0001c0001t0001g0005 a0001c0001t0001g0002 a0001c0001t0001g0005	3	418	0.0072	33	c.21 others(44): Show c.2128_*2129insTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	TDP2	ENSG00000111802.14	transcript	ENST00000378198.9	protein_coding		1319		chr6	TogoVar
TDP2_chr6_24644979_24671899	24667027	T T	TGGGTGCG others(26): Show TGGGTGCGAAGCGCGCATGCGCGCTTCGTCACAA	upstream_gene_variant upstream_gene_variant	MODIFIER	NA19070.hp1 NA19070.hp1	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0001 a0002c0002t0001	a0002c0002t0001g0001 a0002c0002t0001g0001	1	418	0.0024	33	c.-16 others(42): Show c.-166_-165insTTGTGACGAAGCGCGCATGCGCGCTTCGCACCC	TDP2	ENSG00000111802.14	transcript	ENST00000378198.9	protein_coding		129		chr6	TogoVar

Search by Variant

Search

Search Results (Total: 4928 hits)