Joint Open Genome and Omics Platform (JoGo)

Search by Variant

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Chr

Chromosome name (e.g., chr11).

Snpeff genename

Exact SnpEff gene name.

Sampleids

Target sampleid (e.g. HG02615).

Snpeff haplotype class

Haplotype-annotation class (e.g., ahapid, ahapid+chapid).

Snpeff annotation impact

Exact impact level (e.g., HIGH, MODERATE, LOW).

Snpeff annotation impact detail

Keyword match in SnpEff annotation.

Hapid

One or more haplotype IDs (comma-separated; e.g., a0001, a01, a0001c0001, a01c02, a1c2, a0001c0001t0005, a0001c0001t0005g0018).

Samplehapid

Sample haplotype IDs to include (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

No_hapid

Haplotype IDs to exclude (comma-separated; e.g., a0001, a0002, a0001c0001, a0001c0001t0005, a1, a01).

No_samplehapid

Sample haplotype IDs to exclude (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

Start

Start position (GRCh38).

End

End position (GRCh38).

Minac

Minimum alternate allele count (≥).

Maxac

Maximum alternate allele count (≤).

Minlen

Minimum variant length (≥).

Maxlen

Maximum variant length (≤).

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regionname	pos	ref	alt	annotation	impact	samples	ahapids	achapids	acthapids	actghapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	external
TBCD_chr17_82747065_82950914	82844206	C C	CGTGTGTG others(27): Show CGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT	intron_variant intron_variant	MODIFIER	NA18951.hp1 NA18951.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0002 a0001c0002t0002	a0001c0002t0002g0072 a0001c0002t0002g0072	1	318	0.0031	34	c.131 others(55): Show c.1319-25988_1319-25987insGTGTGTGTGTGTGTGTGTGTGTGT GTGTGTGTGT	TBCD	ENSG00000141556.22	transcript	ENST00000355528.9	protein_coding	13/38		INFO_REALIGN_3_PRIME	chr17	TogoVar
TBCD_chr17_82747065_82950914	82946569	A A	AGTGTGTG others(27): Show AGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT	downstream_gene_variant downstream_gene_variant	MODIFIER	NA18945.hp1 NA18945.hp1	a0003 a0003	a0003c0004 a0003c0004	a0003c0004t0004 a0003c0004t0004	a0003c0004t0004g0198 a0003c0004t0004g0198	1	318	0.0031	34	c.41 others(45): Show c.4106_*4107insGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT	TBCD	ENSG00000141556.22	transcript	ENST00000355528.9	protein_coding		656		chr17	TogoVar
TBCE_chr1_235362427_235457443	235428969	G G	GTGTGTGT others(27): Show GTGTGTGTGTGTGTGTGTGTGTGTGTATATATATA	intron_variant intron_variant	MODIFIER	NA20300.hp1 NA20300.hp1	a0003 a0003	a0003c0004 a0003c0004	a0003c0004t0037 a0003c0004t0037	a0003c0004t0037g0172 a0003c0004t0037g0172	1	268	0.0037	34	c.560 others(51): Show c.560+1731_560+1732insGTGTGTGTGTGTGTGTGTGTGTGTATAT ATATAT	TBCE	ENSG00000284770.2	transcript	ENST00000642610.2	protein_coding	6/16		INFO_REALIGN_3_PRIME	chr1	TogoVar
TBL1XR1_chr3_177014344_177202482	177017422	G G	GTTTTTTT others(27): Show GTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01952.hp1 HG01952.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0038 a0001c0001t0038	a0001c0001t0038g0267 a0001c0001t0038g0267	1	306	0.0033	34	c.80 others(45): Show c.8075_*8076insAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	TBL1XR1	ENSG00000177565.19	transcript	ENST00000457928.7	protein_coding		1921		chr3	TogoVar
TBL1XR1_chr3_177014344_177202482	177112107	A A	ATATATAT others(27): Show ATATATATATATATATATATATATATATTTTTTTT	intron_variant intron_variant	MODIFIER	HG00597.hp2 HG02074.hp1 HG00597.hp2 HG02074.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0026 a0001c0001t0002g0048 a0001c0001t0002g0026 a0001c0001t0002g0048	2	306	0.0065	34	c.-12 others(55): Show c.-121-13567_-121-13566insAAAAAAAATATATATATATATATA TATATATATA	TBL1XR1	ENSG00000177565.19	transcript	ENST00000457928.7	protein_coding	1/15			chr3	TogoVar
TBL1XR1_chr3_177014344_177202482	177112107	A A	ATATATAT others(27): Show ATATATATATATATATATATATATATTTTTTTTTT	intron_variant intron_variant	MODIFIER	NA18967.hp1 NA19003.hp2 NA18967.hp1 NA19003.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0016 a0001c0001t0002 a0001c0001t0016	a0001c0001t0002g0068 a0001c0001t0016g0036 a0001c0001t0002g0068 a0001c0001t0016g0036	2	306	0.0065	34	c.-12 others(55): Show c.-121-13567_-121-13566insAAAAAAAAAATATATATATATATA TATATATATA	TBL1XR1	ENSG00000177565.19	transcript	ENST00000457928.7	protein_coding	1/15			chr3	TogoVar
TBL1XR1_chr3_177014344_177202482	177112107	A A	ATATATAT others(27): Show ATATATATATATATATATATATATTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	NA19062.hp2 NA19062.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0065 a0001c0001t0002g0065	1	306	0.0033	34	c.-12 others(55): Show c.-121-13567_-121-13566insAAAAAAAAAAAATATATATATATA TATATATATA	TBL1XR1	ENSG00000177565.19	transcript	ENST00000457928.7	protein_coding	1/15			chr3	TogoVar
TBL1XR1_chr3_177014344_177202482	177112107	A A	ATATATAT others(27): Show ATATATATATATATATATATATTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG02148.hp1 HG02148.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0120 a0001c0001t0002g0120	1	306	0.0033	34	c.-12 others(55): Show c.-121-13567_-121-13566insAAAAAAAAAAAAAATATATATATA TATATATATA	TBL1XR1	ENSG00000177565.19	transcript	ENST00000457928.7	protein_coding	1/15			chr3	TogoVar
TBL1XR1_chr3_177014344_177202482	177135333	G G	GTGTGTGT others(27): Show GTGTGTGTGTGTGTGTGTATACATATATATATATA	intron_variant intron_variant	MODIFIER	HG02280.hp1 HG02280.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0077 a0001c0001t0001g0077	1	306	0.0033	34	c.-12 others(55): Show c.-121-36793_-121-36792insTATATATATATATGTATACACACA CACACACACA	TBL1XR1	ENSG00000177565.19	transcript	ENST00000457928.7	protein_coding	1/15			chr3	TogoVar
TBPL1_chr6_133948224_133995432	133987648	G G	GTGTGTGT others(27): Show GTGTGTGTATATATATATATATATATATATATATA	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG01106.hp2 HG01106.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0059 a0001c0001t0059	a0001c0001t0059g0033 a0001c0001t0059g0033	1	330	0.0030	34	c.60 others(43): Show c.609_*610insGTGTGTATATATATATATATATATATATATATAT	TBPL1	ENSG00000028839.10	transcript	ENST00000237264.9	protein_coding	7/7	610	INFO_REALIGN_3_PRIME	chr6	TogoVar
TBPL1_chr6_133948224_133995432	133987660	A A	ATATATAT others(27): Show ATATATATATATATATATATATATATATATATATG	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG00099.hp2 HG02145.hp2 HG02451.hp2 others(1): Show HG00099.hp2 HG02145.hp2 HG02451.hp2 HG02602.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0026 a0001c0001t0027 a0001c0001t0026 a0001c0001t0027	a0001c0001t0026g0255 a0001c0001t0026g0256 a0001c0001t0027g0246 others(1): Show a0001c0001t0026g0255 a0001c0001t0026g0256 a0001c0001t0027g0246 a0001c0001t0027g0248	4	330	0.0121	34	c.62 others(43): Show c.627_*628insATATATATATATATATATATATATATGTATATAT	TBPL1	ENSG00000028839.10	transcript	ENST00000237264.9	protein_coding	7/7	628	INFO_REALIGN_3_PRIME	chr6	TogoVar
TBX15_chr1_118878047_118993343	118893615	G G	GAAAGAAA others(27): Show GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA	intron_variant intron_variant	MODIFIER	HG02486.hp1 HG03486.hp2 HG02486.hp1 HG03486.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0011 a0001c0001t0015 a0001c0001t0011 a0001c0001t0015	a0001c0001t0011g0245 a0001c0001t0015g0012 a0001c0001t0011g0245 a0001c0001t0015g0012	2	364	0.0055	34	c.102 others(53): Show c.1024+5412_1024+5413insTTCTTTCTTTCTTTCTTTCTTTCTTT CTTTCTTT	TBX15	ENSG00000092607.15	transcript	ENST00000369429.5	protein_coding	7/7			chr1	TogoVar
TBX1_chr22_19755778_19772334	19768953	C C	CTTTTTTT others(27): Show CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	downstream_gene_variant downstream_gene_variant	MODIFIER	NA18975.hp2 NA18975.hp2	a0002 a0002	a0002c0003 a0002c0003	a0002c0003t0001 a0002c0003t0001	a0002c0003t0001g0002 a0002c0003t0001g0002	1	432	0.0023	34	c.20 others(45): Show c.2086_*2087insTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	TBX1	ENSG00000184058.16	transcript	ENST00000649276.2	protein_coding		1620		chr22	TogoVar
TBX20_chr7_35197430_35259100	35201030	C C	CATATATA others(27): Show CATATATATATATATATATATATATATATATATAT	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02027.hp2 HG02080.hp2 HG02145.hp1 others(4): Show HG02027.hp2 HG02080.hp2 HG02145.hp1 HG03704.hp2 NA18947.hp1 NA18977.hp2 NA19007.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0001 a0001c0002t0001 a0001c0001t0001 a0001c0002t0001	a0001c0001t0001g0019 a0001c0001t0001g0189 a0001c0002t0001g0008 others(4): Show a0001c0001t0001g0019 a0001c0001t0001g0189 a0001c0002t0001g0008 a0001c0002t0001g0027 a0001c0002t0001g0206 a0001c0002t0001g0213 a0001c0002t0001g0233	7	302	0.0232	34	c.13 others(45): Show c.1399_*1400insATATATATATATATATATATATATATATATATAT	TBX20	ENSG00000164532.11	transcript	ENST00000408931.4	protein_coding		1399		chr7	TogoVar
TBXAS1_chr7_139824264_140025293	139984640	G G	GAAAGAAA others(27): Show GAAAGAAAGAAAGAAAGAAACAAAGAAAGAAAGAA	intron_variant intron_variant	MODIFIER	HG02572.hp1 HG02572.hp1	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0001 a0002c0002t0001	a0002c0002t0001g0026 a0002c0002t0001g0026	1	270	0.0037	34	c.113 others(55): Show c.1134+22408_1134+22409insAAGAAAGAAAGAAAGAAACAAAGA AAGAAAGAAA	TBXAS1	ENSG00000059377.19	transcript	ENST00000448866.7	protein_coding	9/12		INFO_REALIGN_3_PRIME	chr7	TogoVar
TC2N_chr14_91774746_91872536	91800955	C C	CACACACA others(27): Show CACACACACATATGTATACATATATACATATATAT	intron_variant intron_variant	MODIFIER	HG00140.hp2 HG00423.hp2 HG00438.hp2 others(57): Show HG00140.hp2 HG00423.hp2 HG00438.hp2 HG00544.hp2 HG00609.hp2 HG00639.hp2 HG01071.hp1 HG01258.hp1 HG01261.hp2 HG01433.hp2 HG01496.hp2 HG01516.hp2 HG01517.hp1 HG01952.hp1 HG01975.hp1 HG01978.hp1 HG01993.hp2 HG02004.hp1 HG02004.hp2 HG02040.hp1 HG02040.hp2 HG02132.hp2 HG02135.hp1 HG02145.hp2 HG02148.hp2 HG02257.hp1 HG02293.hp1 HG02698.hp1 HG02717.hp1 HG02735.hp2 HG03209.hp1 HG03453.hp2 HG03710.hp1 HG06807.hp1 NA18612.hp1 NA18612.hp2 NA18942.hp2 NA18945.hp2 NA18960.hp2 NA18962.hp2 NA18964.hp1 NA18973.hp2 NA18978.hp2 NA18986.hp2 NA18993.hp1 NA18995.hp2 NA18998.hp2 NA19002.hp2 NA19007.hp1 NA19011.hp2 NA19043.hp2 NA19077.hp2 NA19080.hp1 NA19081.hp1 NA19084.hp2 NA19087.hp1 NA19091.hp2 NA20300.hp1 NA20752.hp2 NA21309.hp1	a0001 a0001	a0001c0001 a0001c0006 a0001c0001 a0001c0006	a0001c0001t0001 a0001c0001t0002 a0001c0001t0013 others(3): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0013 a0001c0001t0014 a0001c0001t0033 a0001c0006t0002	a0001c0001t0001g0017 a0001c0001t0001g0034 a0001c0001t0001g0035 others(57): Show a0001c0001t0001g0017 a0001c0001t0001g0034 a0001c0001t0001g0035 a0001c0001t0001g0175 a0001c0001t0002g0204 a0001c0001t0002g0205 a0001c0001t0002g0206 a0001c0001t0002g0208 a0001c0001t0002g0209 a0001c0001t0002g0210 a0001c0001t0002g0211 a0001c0001t0002g0216 a0001c0001t0002g0218 a0001c0001t0002g0220 a0001c0001t0002g0245 a0001c0001t0002g0246 a0001c0001t0002g0249 a0001c0001t0002g0252 a0001c0001t0002g0253 a0001c0001t0002g0254 a0001c0001t0002g0255 a0001c0001t0002g0256 a0001c0001t0002g0257 a0001c0001t0002g0259 a0001c0001t0002g0260 a0001c0001t0002g0261 a0001c0001t0002g0262 a0001c0001t0002g0263 a0001c0001t0002g0264 a0001c0001t0002g0265 a0001c0001t0002g0266 a0001c0001t0002g0267 a0001c0001t0002g0268 a0001c0001t0002g0269 a0001c0001t0002g0270 a0001c0001t0002g0271 a0001c0001t0002g0272 a0001c0001t0002g0273 a0001c0001t0002g0274 a0001c0001t0002g0275 a0001c0001t0002g0276 a0001c0001t0002g0281 a0001c0001t0002g0284 a0001c0001t0002g0285 a0001c0001t0002g0287 a0001c0001t0002g0289 a0001c0001t0002g0292 a0001c0001t0002g0294 a0001c0001t0002g0303 a0001c0001t0002g0304 a0001c0001t0002g0305 a0001c0001t0002g0306 a0001c0001t0002g0307 a0001c0001t0002g0309 a0001c0001t0002g0310 a0001c0001t0013g0020 a0001c0001t0014g0248 a0001c0001t0014g0308 a0001c0001t0033g0247 a0001c0006t0002g0258	60	344	0.1744	34	c.470 others(49): Show c.470-617_470-584dupATATATATGTATATATGTATACATATGTGT GTGT	TC2N	ENSG00000165929.13	transcript	ENST00000435962.7	protein_coding	4/11			chr14	TogoVar
TCF12_chr15_56913644_57294853	56984001	C C	CAAAAAAA others(27): Show CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	NA19062.hp2 NA19062.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0027 a0001c0002t0001g0027	1	330	0.0030	34	c.148 others(53): Show c.148+62918_148+62919insAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAA	TCF12	ENSG00000140262.18	transcript	ENST00000333725.10	protein_coding	3/20		INFO_REALIGN_3_PRIME	chr15	TogoVar
TCF12_chr15_56913644_57294853	56984014	A A	AAAAAAAA others(27): Show AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAG	intron_variant intron_variant	MODIFIER	HG02135.hp2 HG02135.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0082 a0001c0001t0001g0082	1	330	0.0030	34	c.148 others(53): Show c.148+62918_148+62919insAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAGAA	TCF12	ENSG00000140262.18	transcript	ENST00000333725.10	protein_coding	3/20		INFO_REALIGN_3_PRIME	chr15	TogoVar
TCF12_chr15_56913644_57294853	57075800	T T	TCTTCTCT others(27): Show TCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC	intron_variant intron_variant	MODIFIER	NA19082.hp2 NA19082.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0183 a0001c0001t0003g0183	1	330	0.0030	34	c.222 others(53): Show c.222+11977_222+11978insCTTCTCTCTCTCTCTCTCTCTCTCTC TCTCTCTC	TCF12	ENSG00000140262.18	transcript	ENST00000333725.10	protein_coding	4/20			chr15	TogoVar
TCF12_chr15_56913644_57294853	57075800	T T	TTCTCTCT others(27): Show TTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC	intron_variant intron_variant	MODIFIER	NA18949.hp2 NA18949.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0017 a0001c0001t0017	a0001c0001t0017g0187 a0001c0001t0017g0187	1	330	0.0030	34	c.222 others(53): Show c.222+11980_222+11981insCTCTCTCTCTCTCTCTCTCTCTCTCT CTCTCTCT	TCF12	ENSG00000140262.18	transcript	ENST00000333725.10	protein_coding	4/20		INFO_REALIGN_3_PRIME	chr15	TogoVar
TCF12_chr15_56913644_57294853	57075804	T T	TTCTCTCT others(27): Show TTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC	intron_variant intron_variant	MODIFIER	NA19054.hp2 NA19054.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0026 a0001c0001t0026	a0001c0001t0026g0231 a0001c0001t0026g0231	1	330	0.0030	34	c.222 others(53): Show c.222+12012_222+12013insCTCTCTCTCTCTCTCTCTCTCTCTCT CTCTCTCT	TCF12	ENSG00000140262.18	transcript	ENST00000333725.10	protein_coding	4/20		INFO_REALIGN_3_PRIME	chr15	TogoVar
TCF12_chr15_56913644_57294853	57075804	T T	TTCTTTCT others(27): Show TTCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC	intron_variant intron_variant	MODIFIER	HG01993.hp1 HG03486.hp2 HG01993.hp1 HG03486.hp2	a0001 a0001	a0001c0001 a0001c0004 a0001c0001 a0001c0004	a0001c0001t0001 a0001c0004t0005 a0001c0001t0001 a0001c0004t0005	a0001c0001t0001g0077 a0001c0004t0005g0145 a0001c0001t0001g0077 a0001c0004t0005g0145	2	330	0.0061	34	c.222 others(53): Show c.222+11984_222+11985insTTCTCTCTCTCTCTCTCTCTCTCTCT CTCTCTCT	TCF12	ENSG00000140262.18	transcript	ENST00000333725.10	protein_coding	4/20		INFO_REALIGN_3_PRIME	chr15	TogoVar
TCF12_chr15_56913644_57294853	57075804	T T	TTCTTTCT others(27): Show TTCTTTCTTTCTTTCTCTCTCTCTCTCTCTCTCTC	intron_variant intron_variant	MODIFIER	HG03041.hp1 HG03041.hp1	a0001 a0001	a0001c0004 a0001c0004	a0001c0004t0005 a0001c0004t0005	a0001c0004t0005g0149 a0001c0004t0005g0149	1	330	0.0030	34	c.222 others(53): Show c.222+11984_222+11985insTTCTTTCTTTCTCTCTCTCTCTCTCT CTCTCTCT	TCF12	ENSG00000140262.18	transcript	ENST00000333725.10	protein_coding	4/20		INFO_REALIGN_3_PRIME	chr15	TogoVar
TCF12_chr15_56913644_57294853	57177608	C C	CAGAGAGA others(27): Show CAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG	intron_variant intron_variant	MODIFIER	HG01934.hp1 NA19043.hp2 HG01934.hp1 NA19043.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0001 a0001c0002t0001 a0001c0001t0001 a0001c0002t0001	a0001c0001t0001g0101 a0001c0002t0001g0323 a0001c0001t0001g0101 a0001c0002t0001g0323	2	330	0.0061	34	c.390 others(53): Show c.390+11172_390+11173insAGAGAGAGAGAGAGAGAGAGAGAGAG AGAGAGAG	TCF12	ENSG00000140262.18	transcript	ENST00000333725.10	protein_coding	6/20		INFO_REALIGN_3_PRIME	chr15	TogoVar
TCF20_chr22_42155013_42275653	42157239	A A	ACCTCCGG others(27): Show ACCTCCGGCCTACCCCTACCCCCGAACTCCCCCAC	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00733.hp2 HG00733.hp2	a0003 a0003	a0003c0004 a0003c0004	a0003c0004t0001 a0003c0004t0001	a0003c0004t0001g0115 a0003c0004t0001g0115	1	355	0.0028	34	c.41 others(45): Show c.4163_*4164insGTGGGGGAGTTCGGGGGTAGGGGTAGGCCGGAGG	TCF20	ENSG00000100207.21	transcript	ENST00000677622.1	protein_coding		2773		chr22	TogoVar
TCF20_chr22_42155013_42275653	42219355	C C	CAAAAAAA others(27): Show CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG03490.hp1 NA18994.hp1 NA19060.hp1 HG03490.hp1 NA18994.hp1 NA19060.hp1	a0001 a0003 a0001 a0003	a0001c0001 a0003c0004 a0001c0001 a0003c0004	a0001c0001t0001 a0003c0004t0001 a0001c0001t0001 a0003c0004t0001	a0001c0001t0001g0169 a0001c0001t0001g0221 a0003c0004t0001g0118 a0001c0001t0001g0169 a0001c0001t0001g0221 a0003c0004t0001g0118	3	355	0.0085	34	c.-36 others(51): Show c.-36-4015_-36-4014insTTTTTTTTTTTTTTTTTTTTTTTTTTTT TTTTTT	TCF20	ENSG00000100207.21	transcript	ENST00000677622.1	protein_coding	1/5			chr22	TogoVar
TCF25_chr16_89868592_89916379	89869053	A A	AAAAAAAA others(27): Show AAAAAAAAAAAAAATATATATATATATATATATAT	upstream_gene_variant upstream_gene_variant	MODIFIER	NA19003.hp2 NA19003.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0201 a0001c0001t0001g0201	1	300	0.0033	34	c.-46 others(45): Show c.-4615_-4614insAAAAAAAAAAAAATATATATATATATATATATAT	TCF25	ENSG00000141002.20	transcript	ENST00000263346.13	protein_coding		4538		chr16	TogoVar
TCF25_chr16_89868592_89916379	89869053	A A	AAAAAAAA others(27): Show AAAAAAAAAAAATATATATATATATATATATATAT	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02602.hp2 HG02602.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0258 a0001c0001t0001g0258	1	300	0.0033	34	c.-46 others(45): Show c.-4615_-4614insAAAAAAAAAAATATATATATATATATATATATAT	TCF25	ENSG00000141002.20	transcript	ENST00000263346.13	protein_coding		4538		chr16	TogoVar
TCF25_chr16_89868592_89916379	89869053	A A	AAAAAAAA others(27): Show AAAAAAAAAATATATATATATATATATATATATAT	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02027.hp2 HG03492.hp2 HG02027.hp2 HG03492.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0227 a0001c0001t0001g0229 a0001c0001t0001g0227 a0001c0001t0001g0229	2	300	0.0067	34	c.-46 others(45): Show c.-4615_-4614insAAAAAAAAATATATATATATATATATATATATAT	TCF25	ENSG00000141002.20	transcript	ENST00000263346.13	protein_coding		4538		chr16	TogoVar
TCF25_chr16_89868592_89916379	89869053	A A	AAAAAAAA others(27): Show AAAAAAAATATATATATATATATATATATATATAT	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02735.hp2 NA19087.hp2 HG02735.hp2 NA19087.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0234 a0001c0001t0001g0249 a0001c0001t0001g0234 a0001c0001t0001g0249	2	300	0.0067	34	c.-46 others(45): Show c.-4615_-4614insAAAAAAATATATATATATATATATATATATATAT	TCF25	ENSG00000141002.20	transcript	ENST00000263346.13	protein_coding		4538		chr16	TogoVar
TCF25_chr16_89868592_89916379	89869053	A A	AAAAAACA others(27): Show AAAAAACATATATATATATATATATATATATATAT	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02145.hp2 HG02145.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0017 a0001c0001t0001g0017	1	300	0.0033	34	c.-46 others(45): Show c.-4615_-4614insAAAAACATATATATATATATATATATATATATAT	TCF25	ENSG00000141002.20	transcript	ENST00000263346.13	protein_coding		4538		chr16	TogoVar
TCF25_chr16_89868592_89916379	89869053	A A	AAAAAATA others(27): Show AAAAAATATATATATATATATATATATATATATAT	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00280.hp1 HG01168.hp2 HG00280.hp1 HG01168.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0004 a0001c0001t0001g0212 a0001c0001t0001g0004 a0001c0001t0001g0212	2	300	0.0067	34	c.-46 others(45): Show c.-4615_-4614insAAAAATATATATATATATATATATATATATATAT	TCF25	ENSG00000141002.20	transcript	ENST00000263346.13	protein_coding		4538		chr16	TogoVar
TCF3_chr19_1604292_1657615	1627796	G G	GCAGAACT others(27): Show GCAGAACTCACGGGGGTGGGGCGGGAAGGGGACAC	intron_variant intron_variant	MODIFIER	HG01109.hp2 HG03471.hp2 HG01109.hp2 HG03471.hp2	a0004 a0005 a0004 a0005	a0004c0033 a0005c0010 a0004c0033 a0005c0010	a0004c0033t0036 a0005c0010t0018 a0004c0033t0036 a0005c0010t0018	a0004c0033t0036g0350 a0005c0010t0018g0169 a0004c0033t0036g0350 a0005c0010t0018g0169	2	352	0.0057	34	c.299 others(49): Show c.299-371_299-370insGTGTCCCCTTCCCGCCCCACCCCCGTGAGT TCTG	TCF3	ENSG00000071564.19	transcript	ENST00000262965.12	protein_coding	5/18			chr19	TogoVar
TCF3_chr19_1604292_1657615	1627842	A A	AGGGGGTG others(27): Show AGGGGGTGAGGCGGGAAGGGGACAGCAGAGCTCAC	intron_variant intron_variant	MODIFIER	HG02071.hp2 HG02071.hp2	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0005 a0001c0003t0005	a0001c0003t0005g0325 a0001c0003t0005g0325	1	352	0.0028	34	c.299 others(49): Show c.299-450_299-417dupGTGAGCTCTGCTGTCCCCTTCCCGCCTCAC CCCC	TCF3	ENSG00000071564.19	transcript	ENST00000262965.12	protein_coding	5/18			chr19	TogoVar
TCF3_chr19_1604292_1657615	1627842	A A	AGGGGGTG others(27): Show AGGGGGTGGGGCGGGAAGGGGACAGCAGAGCTCAC	intron_variant intron_variant	MODIFIER	HG03486.hp1 HG03486.hp1	a0001 a0001	a0001c0007 a0001c0007	a0001c0007t0071 a0001c0007t0071	a0001c0007t0071g0199 a0001c0007t0071g0199	1	352	0.0028	34	c.299 others(49): Show c.299-417_299-416insGTGAGCTCTGCTGTCCCCTTCCCGCCCCAC CCCC	TCF3	ENSG00000071564.19	transcript	ENST00000262965.12	protein_coding	5/18			chr19	TogoVar
TCF3_chr19_1604292_1657615	1627877	A A	AGGGGGTG others(27): Show AGGGGGTGAGGCGGGAAGGGGACAGCAGAGCTCAC	intron_variant intron_variant	MODIFIER	HG01361.hp2 HG01361.hp2	a0001 a0001	a0001c0004 a0001c0004	a0001c0004t0001 a0001c0004t0001	a0001c0004t0001g0166 a0001c0004t0001g0166	1	352	0.0028	34	c.299 others(49): Show c.299-485_299-452dupGTGAGCTCTGCTGTCCCCTTCCCGCCTCAC CCCC	TCF3	ENSG00000071564.19	transcript	ENST00000262965.12	protein_coding	5/18			chr19	TogoVar
TCF3_chr19_1604292_1657615	1627913	G G	GGGGGTGA others(27): Show GGGGGTGAGGCGGGAAGGGGACAGCAGAACTCACA	intron_variant intron_variant	MODIFIER	HG01981.hp1 HG02135.hp1 HG01981.hp1 HG02135.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0083 a0001c0002t0001 a0001c0002t0083	a0001c0002t0001g0218 a0001c0002t0083g0307 a0001c0002t0001g0218 a0001c0002t0083g0307	2	352	0.0057	34	c.299 others(49): Show c.299-488_299-487insTGTGAGTTCTGCTGTCCCCTTCCCGCCTCA CCCC	TCF3	ENSG00000071564.19	transcript	ENST00000262965.12	protein_coding	5/18			chr19	TogoVar
TCF3_chr19_1604292_1657615	1628015	A A	AGGGGGTG others(27): Show AGGGGGTGAGGCGGGAAGGGGACAGCAGAGCTCAC	intron_variant intron_variant	MODIFIER	HG01168.hp2 HG01168.hp2	a0018 a0018	a0018c0018 a0018c0018	a0018c0018t0001 a0018c0018t0001	a0018c0018t0001g0164 a0018c0018t0001g0164	1	352	0.0028	34	c.299 others(49): Show c.299-623_299-590dupGTGAGCTCTGCTGTCCCCTTCCCGCCTCAC CCCC	TCF3	ENSG00000071564.19	transcript	ENST00000262965.12	protein_coding	5/18			chr19	TogoVar
TCF3_chr19_1604292_1657615	1628023	A A	AGGCGGGA others(27): Show AGGCGGGAAGGGGACAGCAGAGCTCACGGGGGTGG	intron_variant intron_variant	MODIFIER	HG03486.hp1 HG03486.hp1	a0001 a0001	a0001c0007 a0001c0007	a0001c0007t0071 a0001c0007t0071	a0001c0007t0071g0199 a0001c0007t0071g0199	1	352	0.0028	34	c.299 others(49): Show c.299-598_299-597insCCACCCCCGTGAGCTCTGCTGTCCCCTTCC CGCC	TCF3	ENSG00000071564.19	transcript	ENST00000262965.12	protein_coding	5/18			chr19	TogoVar
TCF3_chr19_1604292_1657615	1628050	A A	AGGGGGTG others(27): Show AGGGGGTGAGGTGGGAAGGGGACAGCAGAGCTCAT	intron_variant intron_variant	MODIFIER	HG02451.hp1 HG02451.hp1	a0004 a0004	a0004c0014 a0004c0014	a0004c0014t0079 a0004c0014t0079	a0004c0014t0079g0305 a0004c0014t0079g0305	1	352	0.0028	34	c.299 others(49): Show c.299-625_299-624insATGAGCTCTGCTGTCCCCTTCCCACCTCAC CCCC	TCF3	ENSG00000071564.19	transcript	ENST00000262965.12	protein_coding	5/18			chr19	TogoVar
TCF3_chr19_1604292_1657615	1628083	A A	ATGGGGTG others(27): Show ATGGGGTGAGGCGGGAAGGGGACAGCAGAGCTCGC	intron_variant intron_variant	MODIFIER	HG02258.hp1 HG02258.hp1	a0001 a0001	a0001c0004 a0001c0004	a0001c0004t0021 a0001c0004t0021	a0001c0004t0021g0312 a0001c0004t0021g0312	1	352	0.0028	34	c.299 others(49): Show c.299-658_299-657insGCGAGCTCTGCTGTCCCCTTCCCGCCTCAC CCCA	TCF3	ENSG00000071564.19	transcript	ENST00000262965.12	protein_coding	5/18			chr19	TogoVar
TCF3_chr19_1604292_1657615	1628130	C C	CGGGAAGG others(27): Show CGGGAAGGGGACAGCAGAGCTCACGGGGGTGAGGT	intron_variant intron_variant	MODIFIER	HG02717.hp2 HG02717.hp2	a0001 a0001	a0001c0007 a0001c0007	a0001c0007t0003 a0001c0007t0003	a0001c0007t0003g0107 a0001c0007t0003g0107	1	352	0.0028	34	c.299 others(49): Show c.299-705_299-704insACCTCACCCCCGTGAGCTCTGCTGTCCCCT TCCC	TCF3	ENSG00000071564.19	transcript	ENST00000262965.12	protein_coding	5/18			chr19	TogoVar
TCF3_chr19_1604292_1657615	1628153	C C	CGGGGTGA others(27): Show CGGGGTGAGGTGGGAAGGGGACAGCAGAGCTCACG	intron_variant intron_variant	MODIFIER	HG00673.hp1 NA19000.hp1 NA19004.hp1 others(2): Show HG00673.hp1 NA19000.hp1 NA19004.hp1 NA19012.hp2 NA19068.hp1	a0002 a0002	a0002c0001 a0002c0001	a0002c0001t0007 a0002c0001t0019 a0002c0001t0069 others(2): Show a0002c0001t0007 a0002c0001t0019 a0002c0001t0069 a0002c0001t0073 a0002c0001t0087	a0002c0001t0007g0085 a0002c0001t0019g0084 a0002c0001t0069g0082 others(2): Show a0002c0001t0007g0085 a0002c0001t0019g0084 a0002c0001t0069g0082 a0002c0001t0073g0079 a0002c0001t0087g0291	5	352	0.0142	34	c.299 others(49): Show c.299-728_299-727insCGTGAGCTCTGCTGTCCCCTTCCCACCTCA CCCC	TCF3	ENSG00000071564.19	transcript	ENST00000262965.12	protein_coding	5/18			chr19	TogoVar
TCF3_chr19_1604292_1657615	1628177	C C	CAGAGCTC others(27): Show CAGAGCTCACGGGGATGGGGCGGGAAGGGGACAGA	intron_variant intron_variant	MODIFIER	HG00423.hp2 NA18950.hp1 NA18964.hp1 others(3): Show HG00423.hp2 NA18950.hp1 NA18964.hp1 NA18970.hp1 NA19065.hp1 NA19070.hp2	a0003 a0017 a0003 a0017	a0003c0006 a0017c0026 a0003c0006 a0017c0026	a0003c0006t0001 a0003c0006t0002 a0003c0006t0017 others(2): Show a0003c0006t0001 a0003c0006t0002 a0003c0006t0017 a0003c0006t0080 a0017c0026t0002	a0003c0006t0001g0115 a0003c0006t0001g0119 a0003c0006t0002g0120 others(3): Show a0003c0006t0001g0115 a0003c0006t0001g0119 a0003c0006t0002g0120 a0003c0006t0017g0294 a0003c0006t0080g0296 a0017c0026t0002g0112	6	352	0.0171	34	c.299 others(49): Show c.299-752_299-751insTCTGTCCCCTTCCCGCCCCATCCCCGTGAG CTCT	TCF3	ENSG00000071564.19	transcript	ENST00000262965.12	protein_coding	5/18			chr19	TogoVar
TCF3_chr19_1604292_1657615	1628181	G G	GCTCACGG others(27): Show GCTCACGGGGGTGAGGCGGGAAGGGGACAGCAGAA	intron_variant intron_variant	MODIFIER	HG01256.hp1 HG01433.hp2 HG02027.hp1 others(5): Show HG01256.hp1 HG01433.hp2 HG02027.hp1 NA18970.hp2 NA19012.hp1 NA19055.hp2 NA19078.hp2 NA19080.hp1	a0001 a0008 a0011 a0001 a0008 a0011	a0001c0002 a0008c0032 a0011c0031 a0001c0002 a0008c0032 a0011c0031	a0001c0002t0001 a0001c0002t0002 a0001c0002t0005 others(2): Show a0001c0002t0001 a0001c0002t0002 a0001c0002t0005 a0008c0032t0061 a0011c0031t0048	a0001c0002t0001g0209 a0001c0002t0001g0212 a0001c0002t0001g0216 others(5): Show a0001c0002t0001g0209 a0001c0002t0001g0212 a0001c0002t0001g0216 a0001c0002t0001g0265 a0001c0002t0002g0264 a0001c0002t0005g0328 a0008c0032t0061g0211 a0011c0031t0048g0043	8	352	0.0227	34	c.299 others(49): Show c.299-756_299-755insTTCTGCTGTCCCCTTCCCGCCTCACCCCCG TGAG	TCF3	ENSG00000071564.19	transcript	ENST00000262965.12	protein_coding	5/18			chr19	TogoVar
TCF3_chr19_1604292_1657615	1628220	A A	AGGGGATG others(27): Show AGGGGATGAGGCGGGAAGGGGACAGCAGAGCTCAC	intron_variant intron_variant	MODIFIER	HG02647.hp2 HG02647.hp2	a0001 a0001	a0001c0004 a0001c0004	a0001c0004t0003 a0001c0004t0003	a0001c0004t0003g0285 a0001c0004t0003g0285	1	352	0.0028	34	c.299 others(49): Show c.299-795_299-794insGTGAGCTCTGCTGTCCCCTTCCCGCCTCAT CCCC	TCF3	ENSG00000071564.19	transcript	ENST00000262965.12	protein_coding	5/18			chr19	TogoVar
TCF3_chr19_1604292_1657615	1628225	G G	GTGAGGCG others(27): Show GTGAGGCGGGAAGGGGACAGCAGAGCTCACGGGGA	intron_variant intron_variant	MODIFIER	HG04115.hp1 HG04115.hp1	a0001 a0001	a0001c0005 a0001c0005	a0001c0005t0025 a0001c0005t0025	a0001c0005t0025g0034 a0001c0005t0025g0034	1	352	0.0028	34	c.299 others(49): Show c.299-800_299-799insTCCCCGTGAGCTCTGCTGTCCCCTTCCCGC CTCA	TCF3	ENSG00000071564.19	transcript	ENST00000262965.12	protein_coding	5/18			chr19	TogoVar
TCF3_chr19_1604292_1657615	1628254	C C	CGGGGTGA others(27): Show CGGGGTGAGGCGGGAAGGGGACAGCAGAGCTCACA	intron_variant intron_variant	MODIFIER	NA18971.hp1 NA18971.hp1	a0003 a0003	a0003c0006 a0003c0006	a0003c0006t0001 a0003c0006t0001	a0003c0006t0001g0160 a0003c0006t0001g0160	1	352	0.0028	34	c.299 others(49): Show c.299-829_299-828insTGTGAGCTCTGCTGTCCCCTTCCCGCCTCA CCCC	TCF3	ENSG00000071564.19	transcript	ENST00000262965.12	protein_coding	5/18			chr19	TogoVar
TCF3_chr19_1604292_1657615	1628322	A A	AGGGGGTG others(27): Show AGGGGGTGAGGCGGGAAGGGGACAGCAGAGCTCAC	intron_variant intron_variant	MODIFIER	HG00673.hp2 HG00673.hp2	a0001 a0001	a0001c0005 a0001c0005	a0001c0005t0017 a0001c0005t0017	a0001c0005t0017g0293 a0001c0005t0017g0293	1	352	0.0028	34	c.299 others(49): Show c.299-897_299-896insGTGAGCTCTGCTGTCCCCTTCCCGCCTCAC CCCC	TCF3	ENSG00000071564.19	transcript	ENST00000262965.12	protein_coding	5/18			chr19	TogoVar
TCF3_chr19_1604292_1657615	1628327	A A	ATGAGGCG others(27): Show ATGAGGCGGGAAGGGGACAGCAGAACTCACGGGGG	intron_variant intron_variant	MODIFIER	NA19056.hp1 NA19056.hp1	a0003 a0003	a0003c0006 a0003c0006	a0003c0006t0001 a0003c0006t0001	a0003c0006t0001g0116 a0003c0006t0001g0116	1	352	0.0028	34	c.299 others(49): Show c.299-902_299-901insCCCCCGTGAGTTCTGCTGTCCCCTTCCCGC CTCA	TCF3	ENSG00000071564.19	transcript	ENST00000262965.12	protein_coding	5/18			chr19	TogoVar

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Search Results (Total: 7994 hits)