Joint Open Genome and Omics Platform (JoGo)

Search by Variant

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Chr

Chromosome name (e.g., chr11).

Snpeff genename

Exact SnpEff gene name.

Sampleids

Target sampleid (e.g. HG02615).

Snpeff haplotype class

Haplotype-annotation class (e.g., ahapid, ahapid+chapid).

Snpeff annotation impact

Exact impact level (e.g., HIGH, MODERATE, LOW).

Snpeff annotation impact detail

Keyword match in SnpEff annotation.

Hapid

One or more haplotype IDs (comma-separated; e.g., a0001, a01, a0001c0001, a01c02, a1c2, a0001c0001t0005, a0001c0001t0005g0018).

Samplehapid

Sample haplotype IDs to include (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

No_hapid

Haplotype IDs to exclude (comma-separated; e.g., a0001, a0002, a0001c0001, a0001c0001t0005, a1, a01).

No_samplehapid

Sample haplotype IDs to exclude (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

Start

Start position (GRCh38).

End

End position (GRCh38).

Minac

Minimum alternate allele count (≥).

Maxac

Maximum alternate allele count (≤).

Minlen

Minimum variant length (≥).

Maxlen

Maximum variant length (≤).

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regionname	pos	ref	alt	annotation	impact	samples	ahapids	achapids	acthapids	actghapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	external
TMEM80_chr11_690816_709129	707573	T T	TCCCCACC others(27): Show TCCCCACCACCAGTGGGCCAAAGAAGCCTCCCCAG	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02615.hp1 HG02615.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0002 a0001c0002t0002	a0001c0002t0002g0214 a0001c0002t0002g0214	1	404	0.0025	34	c.44 others(45): Show c.4423_*4424insCCCCACCACCAGTGGGCCAAAGAAGCCTCCCCAG	TMEM80	ENSG00000177042.16	transcript	ENST00000397510.9	protein_coding		3445		chr11	TogoVar
TMEM98_chr17_32923153_32949315	32938579	G G	GGTAGAAG others(27): Show GGTAGAAGAAATCCAGTAGAGCAGTGTGAAGCCAA	intron_variant intron_variant	MODIFIER	NA18957.hp1 NA18957.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0062 a0001c0001t0002g0062	1	402	0.0025	34	c.414 others(49): Show c.414-897_414-864dupGTAGAAGAAATCCAGTAGAGCAGTGTGAAG CCAA	TMEM98	ENSG00000006042.12	transcript	ENST00000579849.6	protein_coding	6/7		INFO_REALIGN_3_PRIME	chr17	TogoVar
TMIGD1_chr17_30311333_30339057	30319261	A A	AAAAAAAA others(27): Show AAAAAAAAAAAAAAAAAAAAAAAAAATATATATAT	intron_variant intron_variant	MODIFIER	HG01192.hp2 HG01192.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0101 a0001c0001t0002g0101	1	348	0.0029	34	c.641 others(49): Show c.641-349_641-348insATATATATATTTTTTTTTTTTTTTTTTTTT TTTT	TMIGD1	ENSG00000182271.13	transcript	ENST00000328886.5	protein_coding	4/6			chr17	TogoVar
TMIGD1_chr17_30311333_30339057	30319261	A A	AAAAAAAA others(27): Show AAAAAAAAAAAAAAAAAAAAAATATATATATATAT	intron_variant intron_variant	MODIFIER	HG02056.hp1 NA18970.hp1 HG02056.hp1 NA18970.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0094 a0001c0001t0002g0095 a0001c0001t0002g0094 a0001c0001t0002g0095	2	348	0.0058	34	c.641 others(49): Show c.641-349_641-348insATATATATATATATTTTTTTTTTTTTTTTT TTTT	TMIGD1	ENSG00000182271.13	transcript	ENST00000328886.5	protein_coding	4/6			chr17	TogoVar
TMIGD1_chr17_30311333_30339057	30319261	A A	AAAAAAAA others(27): Show AAAAAAAAAAAAAAAAAAAATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG03669.hp1 NA19030.hp1 HG03669.hp1 NA19030.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0001 a0001c0001t0002	a0001c0001t0001g0160 a0001c0001t0002g0058 a0001c0001t0001g0160 a0001c0001t0002g0058	2	348	0.0058	34	c.641 others(49): Show c.641-349_641-348insATATATATATATATATTTTTTTTTTTTTTT TTTT	TMIGD1	ENSG00000182271.13	transcript	ENST00000328886.5	protein_coding	4/6			chr17	TogoVar
TMIGD1_chr17_30311333_30339057	30319261	A A	AAAAAAAA others(27): Show AAAAAAAAAAAAAATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG00733.hp2 HG00733.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0065 a0001c0001t0002g0065	1	348	0.0029	34	c.641 others(49): Show c.641-349_641-348insATATATATATATATATATATATTTTTTTTT TTTT	TMIGD1	ENSG00000182271.13	transcript	ENST00000328886.5	protein_coding	4/6			chr17	TogoVar
TMIGD1_chr17_30311333_30339057	30319261	A A	AAAAAAAA others(27): Show AAAAAAAATATATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG03209.hp2 HG03209.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0170 a0001c0001t0001g0170	1	348	0.0029	34	c.641 others(49): Show c.641-349_641-348insATATATATATATATATATATATATATATTT TTTT	TMIGD1	ENSG00000182271.13	transcript	ENST00000328886.5	protein_coding	4/6			chr17	TogoVar
TMOD3_chr15_51824653_51920725	51832203	T T	TTATATAT others(27): Show TTATATATATATATATATATATATATATATATATA	intron_variant intron_variant	MODIFIER	HG00408.hp1 NA18947.hp1 NA18978.hp2 others(1): Show HG00408.hp1 NA18947.hp1 NA18978.hp2 NA19064.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0006 a0001c0001t0007 others(1): Show a0001c0001t0002 a0001c0001t0006 a0001c0001t0007 a0001c0001t0039	a0001c0001t0002g0240 a0001c0001t0006g0165 a0001c0001t0007g0239 others(1): Show a0001c0001t0002g0240 a0001c0001t0006g0165 a0001c0001t0007g0239 a0001c0001t0039g0360	4	372	0.0108	34	c.-75 others(51): Show c.-75+2396_-75+2397insATATATATATATATATATATATATATAT ATATAT	TMOD3	ENSG00000138594.14	transcript	ENST00000308580.12	protein_coding	1/9		INFO_REALIGN_3_PRIME	chr15	TogoVar
TMPO_chr12_98510590_98555351	98521100	A A	ATTTTTTT others(27): Show ATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	NA18968.hp2 NA18968.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0004	a0001c0001t0004g0095 a0001c0001t0004g0095	1	376	0.0027	34	c.279 others(51): Show c.279+4979_279+4980insTTTTTTTTTTTTTTTTTTTTTTTTTTTT TTTTTT	TMPO	ENSG00000120802.14	transcript	ENST00000556029.6	protein_coding	1/8		INFO_REALIGN_3_PRIME	chr12	TogoVar
TMPRSS11F_chr4_68048198_68134869	68072224	A A	AATATATA others(27): Show AATATATATATATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG01952.hp2 HG03491.hp1 NA19074.hp2 HG01952.hp2 HG03491.hp1 NA19074.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0002c0002 a0001c0001 a0002c0002	a0001c0001t0001 a0002c0002t0003 a0001c0001t0001 a0002c0002t0003	a0001c0001t0001g0204 a0002c0002t0003g0056 a0002c0002t0003g0092 a0001c0001t0001g0204 a0002c0002t0003g0056 a0002c0002t0003g0092	3	348	0.0086	34	c.514 others(47): Show c.514+98_514+99insATATATATATATATATATATATATATATATAT AT	TMPRSS11F	ENSG00000198092.6	transcript	ENST00000356291.3	protein_coding	5/9			chr4	TogoVar
TMPRSS15_chr21_18264116_18408785	18345740	C C	CAAAAAAA others(27): Show CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG02486.hp1 HG02717.hp1 HG02486.hp1 HG02717.hp1	a0003 a0008 a0003 a0008	a0003c0038 a0008c0013 a0003c0038 a0008c0013	a0003c0038t0002 a0008c0013t0001 a0003c0038t0002 a0008c0013t0001	a0003c0038t0002g0152 a0008c0013t0001g0214 a0003c0038t0002g0152 a0008c0013t0001g0214	2	314	0.0064	34	c.117 others(53): Show c.1172-1681_1172-1680insTTTTTTTTTTTTTTTTTTTTTTTTTT TTTTTTTT	TMPRSS15	ENSG00000154646.9	transcript	ENST00000284885.8	protein_coding	10/24			chr21	TogoVar
TMPRSS2_chr21_41459305_41513158	41472730	C C	CAGCCTCT others(27): Show CAGCCTCTCTCTAAGGCAGAAAAATACATCCGCCA	intron_variant intron_variant	MODIFIER	NA18991.hp1 NA18991.hp1	a0002 a0002	a0002c0003 a0002c0003	a0002c0003t0006 a0002c0003t0006	a0002c0003t0006g0302 a0002c0003t0006g0302	1	382	0.0026	34	c.899 others(49): Show c.899+561_899+594dupTGGCGGATGTATTTTTCTGCCTTAGAGAGA GGCT	TMPRSS2	ENSG00000184012.14	transcript	ENST00000332149.10	protein_coding	9/13			chr21	TogoVar
TMPRSS2_chr21_41459305_41513158	41474648	A A	AGTGAGGG others(27): Show AGTGAGGGGGCGAGGGGGTGAGTGAGGAGGTGAGC	intron_variant intron_variant	MODIFIER	HG03471.hp1 HG03471.hp1	a0001 a0001	a0001c0011 a0001c0011	a0001c0011t0004 a0001c0011t0004	a0001c0011t0004g0230 a0001c0011t0004g0230	1	382	0.0026	34	c.728 others(51): Show c.728-1153_728-1152insGCTCACCTCCTCACTCACCCCCTCGCCC CCTCAC	TMPRSS2	ENSG00000184012.14	transcript	ENST00000332149.10	protein_coding	8/13			chr21	TogoVar
TMTC2_chr12_82681906_83139866	82876054	G G	GTGGTGGT others(27): Show GTGGTGGTGATGGTGATGGTGATTAGTATTCATAA	intron_variant intron_variant	MODIFIER	HG02886.hp1 HG02886.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0054 a0001c0001t0002g0054	1	96	0.0104	34	c.654 others(53): Show c.654+18482_654+18483insATGGTGATGGTGATTAGTATTCATAA TGGTGGTG	TMTC2	ENSG00000179104.9	transcript	ENST00000321196.8	protein_coding	2/11		INFO_REALIGN_3_PRIME	chr12	TogoVar
TMTC2_chr12_82681906_83139866	82876075	A A	ATTAGTAT others(27): Show ATTAGTATTCATAATGGTGGTGGTGGTGGTGGTGG	intron_variant intron_variant	MODIFIER	HG02622.hp2 HG02622.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0023 a0001c0001t0001g0023	1	96	0.0104	34	c.654 others(53): Show c.654+18496_654+18497insTAGTATTCATAATGGTGGTGGTGGTG GTGGTGGT	TMTC2	ENSG00000179104.9	transcript	ENST00000321196.8	protein_coding	2/11		INFO_REALIGN_3_PRIME	chr12	TogoVar
TMTC2_chr12_82681906_83139866	83045707	T T	TCACACAC others(27): Show TCACACACACACACACACACACACACACACACACA	intron_variant intron_variant	MODIFIER	HG02809.hp1 HG02809.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0031 a0001c0001t0031	a0001c0001t0031g0014 a0001c0001t0031g0014	1	96	0.0104	34	c.215 others(53): Show c.2153-5178_2153-5177insACACACACACACACACACACACACAC ACACACAC	TMTC2	ENSG00000179104.9	transcript	ENST00000321196.8	protein_coding	9/11		INFO_REALIGN_3_PRIME	chr12	TogoVar
TMX2_chr11_57707593_57745973	57717746	G G	GGGGAGAG others(27): Show GGGGAGAGGGGAGAGGGGAGAGGGGAGAGGGGAGA	intron_variant intron_variant	MODIFIER	HG03516.hp1 HG03831.hp2 NA18961.hp2 others(4): Show HG03516.hp1 HG03831.hp2 NA18961.hp2 NA18999.hp1 NA19081.hp2 NA19086.hp2 NA19088.hp2	a0001 a0001	a0001c0001 a0001c0003 a0001c0001 a0001c0003	a0001c0001t0001 a0001c0003t0010 a0001c0001t0001 a0001c0003t0010	a0001c0001t0001g0015 a0001c0001t0001g0016 a0001c0001t0001g0017 others(4): Show a0001c0001t0001g0015 a0001c0001t0001g0016 a0001c0001t0001g0017 a0001c0001t0001g0018 a0001c0001t0001g0019 a0001c0001t0001g0024 a0001c0003t0010g0193	7	344	0.0204	34	c.189 others(51): Show c.189+4948_189+4949insGAGAGGGGAGAGGGGAGAGGGGAGAGGG AGAGGG	TMX2	ENSG00000213593.10	transcript	ENST00000278422.9	protein_coding	1/7		INFO_REALIGN_3_PRIME	chr11	TogoVar
TMX4_chr20_7972346_8024761	8018528	G G	GATATGGA others(27): Show GATATGGAAGAGAGAGAGTCCATCAGCAACTTTTC	intron_variant intron_variant	MODIFIER	HG01167.hp2 HG01167.hp2	a0001 a0001	a0001c0004 a0001c0004	a0001c0004t0026 a0001c0004t0026	a0001c0004t0026g0115 a0001c0004t0026g0115	1	346	0.0029	34	c.176 others(49): Show c.176+909_176+910insGAAAAGTTGCTGATGGACTCTCTCTCTTCC ATAT	TMX4	ENSG00000125827.9	transcript	ENST00000246024.7	protein_coding	1/7			chr20	TogoVar
TNFAIP8L2_chr1_151151649_151164749	151160238	C C	CAAAAAAA others(27): Show CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00323.hp1 HG00544.hp1 HG00597.hp1 others(22): Show HG00323.hp1 HG00544.hp1 HG00597.hp1 HG00597.hp2 HG00639.hp1 HG00735.hp1 HG00735.hp2 HG00741.hp2 HG01071.hp1 HG01123.hp1 HG01258.hp1 HG01258.hp2 HG01884.hp1 HG01978.hp1 HG02040.hp1 HG02300.hp2 HG03017.hp2 NA18942.hp2 NA18955.hp1 NA18955.hp2 NA18983.hp1 NA19000.hp2 NA19003.hp1 NA19003.hp2 NA19087.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0001 a0001c0001t0001g0004 a0001c0001t0001g0001 a0001c0001t0001g0004	25	348	0.0718	34	c.98 others(43): Show c.986_*987insAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	TNFAIP8L2	ENSG00000163154.6	transcript	ENST00000368910.4	protein_coding		490		chr1	TogoVar
TNFAIP8L3_chr15_51051601_51099906	51087919	T T	TTATATAT others(27): Show TTATATATATATATATATATATATATATATATATA	intron_variant intron_variant	MODIFIER	HG00099.hp2 HG01346.hp2 HG01433.hp1 others(6): Show HG00099.hp2 HG01346.hp2 HG01433.hp1 HG02109.hp2 HG02735.hp2 HG03490.hp2 HG03492.hp2 NA18943.hp2 NA19057.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0005 a0001c0001t0001 a0001c0001t0005	a0001c0001t0001g0026 a0001c0001t0001g0142 a0001c0001t0001g0177 others(5): Show a0001c0001t0001g0026 a0001c0001t0001g0142 a0001c0001t0001g0177 a0001c0001t0001g0178 a0001c0001t0001g0212 a0001c0001t0001g0222 a0001c0001t0001g0225 a0001c0001t0005g0250	9	394	0.0228	34	c.52+ others(49): Show c.52+6624_52+6625insTATATATATATATATATATATATATATATA TATA	TNFAIP8L3	ENSG00000183578.8	transcript	ENST00000637513.2	protein_coding	1/1			chr15	TogoVar
TNFAIP8_chr5_119351019_119404688	119394611	A A	ATTTTTTT others(27): Show ATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG02055.hp2 HG03098.hp1 HG02055.hp2 HG03098.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0060 a0001c0002t0061 a0001c0002t0060 a0001c0002t0061	a0001c0002t0060g0226 a0001c0002t0061g0257 a0001c0002t0060g0226 a0001c0002t0061g0257	2	384	0.0052	34	c.12 others(45): Show c.1249_*1250insTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	TNFAIP8	ENSG00000145779.8	transcript	ENST00000504771.3	protein_coding	2/2	1250	INFO_REALIGN_3_PRIME	chr5	TogoVar
TNFRSF18_chr1_1198508_1211592	1210050	G G	GCTGAGAT others(27): Show GCTGAGATCACACCACTGCACTCCAGCCTGGGTGA	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00544.hp2 HG00544.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0001 a0001c0001t0001g0001	1	386	0.0026	34	c.-34 others(45): Show c.-3480_-3479insTCACCCAGGCTGGAGTGCAGTGGTGTGATCTCAG	TNFRSF18	ENSG00000186891.14	transcript	ENST00000379268.7	protein_coding		3459		chr1	TogoVar
TNFSF13_chr17_7553750_7566601	7565229	G G	GGAGTAGA others(27): Show GGAGTAGATCAGCTTTGTATTGGTTCGGGTACTCA	downstream_gene_variant downstream_gene_variant	MODIFIER	NA18988.hp1 NA18988.hp1	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0001 a0002c0002t0001	a0002c0002t0001g0001 a0002c0002t0001g0001	1	440	0.0023	34	c.43 others(45): Show c.4396_*4397insGAGTAGATCAGCTTTGTATTGGTTCGGGTACTCA	TNFSF13	ENSG00000161955.17	transcript	ENST00000338784.9	protein_coding		3629		chr17	TogoVar
TNIP1_chr5_151024945_151086034	151073582	T T	TTGTGTGT others(27): Show TTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG	intron_variant intron_variant	MODIFIER	HG00280.hp1 HG02080.hp1 NA18943.hp1 others(10): Show HG00280.hp1 HG02080.hp1 NA18943.hp1 NA18945.hp2 NA18946.hp2 NA18959.hp1 NA18987.hp2 NA18990.hp1 NA19011.hp2 NA19066.hp1 NA19077.hp1 NA19078.hp2 NA19090.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(1): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0002t0002	a0001c0001t0001g0360 a0001c0001t0002g0026 a0001c0001t0003g0349 others(7): Show a0001c0001t0001g0360 a0001c0001t0002g0026 a0001c0001t0003g0349 a0001c0002t0002g0027 a0001c0002t0002g0028 a0001c0002t0002g0348 a0001c0002t0002g0350 a0001c0002t0002g0351 a0001c0002t0002g0352 a0001c0002t0002g0359	13	402	0.0323	34	c.-37 others(51): Show c.-37+7297_-37+7298insCACACACACACACACACACACACACACA CACACA	TNIP1	ENSG00000145901.16	transcript	ENST00000521591.6	protein_coding	1/17			chr5	TogoVar
TNKS_chr8_9550912_9787346	9717071	T T	TTATATAT others(27): Show TTATATATATATATATATATATATATATATATATA	intron_variant intron_variant	MODIFIER	HG04228.hp1 HG04228.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0156 a0001c0001t0001g0156	1	272	0.0037	34	c.175 others(53): Show c.1750-3303_1750-3302insTATATATATATATATATATATATATA TATATATA	TNKS	ENSG00000173273.17	transcript	ENST00000310430.11	protein_coding	11/26			chr8	TogoVar
TNKS_chr8_9550912_9787346	9717072	A A	AATATATA others(27): Show AATATATATATATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG02630.hp2 HG02630.hp2	a0001 a0001	a0001c0008 a0001c0008	a0001c0008t0051 a0001c0008t0051	a0001c0008t0051g0087 a0001c0008t0051g0087	1	272	0.0037	34	c.175 others(53): Show c.1750-3272_1750-3271insATATATATATATATATATATATATAT ATATATAT	TNKS	ENSG00000173273.17	transcript	ENST00000310430.11	protein_coding	11/26		INFO_REALIGN_3_PRIME	chr8	TogoVar
TNKS_chr8_9550912_9787346	9721298	T T	TTATATAT others(27): Show TTATATATATATATATATATATATATATATATATA	intron_variant intron_variant	MODIFIER	HG01928.hp2 HG01993.hp2 HG02148.hp1 others(2): Show HG01928.hp2 HG01993.hp2 HG02148.hp1 NA18986.hp1 NA18998.hp1	a0001 a0001	a0001c0002 a0001c0005 a0001c0002 a0001c0005	a0001c0002t0004 a0001c0002t0007 a0001c0002t0008 others(1): Show a0001c0002t0004 a0001c0002t0007 a0001c0002t0008 a0001c0005t0003	a0001c0002t0004g0252 a0001c0002t0004g0267 a0001c0002t0007g0259 others(2): Show a0001c0002t0004g0252 a0001c0002t0004g0267 a0001c0002t0007g0259 a0001c0002t0008g0266 a0001c0005t0003g0033	5	272	0.0184	34	c.192 others(51): Show c.1921+767_1921+768insTATATATATATATATATATATATATATA TATATA	TNKS	ENSG00000173273.17	transcript	ENST00000310430.11	protein_coding	12/26		INFO_REALIGN_3_PRIME	chr8	TogoVar
TNNI3K_chr1_74230387_74549428	74451683	T T	TTTTCTTT others(27): Show TTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTC	intron_variant intron_variant	MODIFIER	HG01081.hp1 HG01081.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0097 a0001c0001t0001g0097	1	194	0.0052	34	c.201 others(55): Show c.2012-11751_2012-11750insTCTTTTCTTTTCTTTTCTTTTCTT TTCTTTCTTT	TNNI3K	ENSG00000116783.15	transcript	ENST00000326637.8	protein_coding	20/24		INFO_REALIGN_3_PRIME	chr1	TogoVar
TNN_chr1_175062833_175153075	175112598	C C	CTTTTTTT others(27): Show CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	NA19043.hp1 NA19043.hp1	a0013 a0013	a0013c0014 a0013c0014	a0013c0014t0001 a0013c0014t0001	a0013c0014t0001g0066 a0013c0014t0001g0066	1	374	0.0027	34	c.212 others(53): Show c.2120-4337_2120-4304dupTTTTTTTTTTTTTTTTTTTTTTTTTT TTTTTTTT	TNN	ENSG00000120332.17	transcript	ENST00000239462.9	protein_coding	9/18		INFO_REALIGN_3_PRIME	chr1	TogoVar
TNRC6A_chr16_24724651_24831218	24814408	T T	TTCTTTTT others(27): Show TTCTTTTTTTCTTTTCTTTTTTTTTTCTTTTTTTC	intron_variant intron_variant	MODIFIER	HG02055.hp2 HG02055.hp2	a0001 a0001	a0001c0011 a0001c0011	a0001c0011t0010 a0001c0011t0010	a0001c0011t0010g0351 a0001c0011t0010g0351	1	352	0.0028	34	c.467 others(51): Show c.4673-739_4673-738insTCTTTTTTTCTTTTCTTTTTTTTTTCTT TTTTTC	TNRC6A	ENSG00000090905.19	transcript	ENST00000395799.8	protein_coding	18/24			chr16	TogoVar
TNRC6A_chr16_24724651_24831218	24814409	C C	CTTTTTTT others(27): Show CTTTTTTTCTTTTCTTTTTTTTTTCTTTTTTTCTT	intron_variant intron_variant	MODIFIER	HG03540.hp1 NA20300.hp1 HG03540.hp1 NA20300.hp1	a0001 a0001	a0001c0011 a0001c0011	a0001c0011t0010 a0001c0011t0010	a0001c0011t0010g0346 a0001c0011t0010g0352 a0001c0011t0010g0346 a0001c0011t0010g0352	2	352	0.0057	34	c.467 others(51): Show c.4673-731_4673-730insCTTTTCTTTTTTTTTTCTTTTTTTCTTT TTTTTT	TNRC6A	ENSG00000090905.19	transcript	ENST00000395799.8	protein_coding	18/24		INFO_REALIGN_3_PRIME	chr16	TogoVar
TNR_chr1_175310194_175748595	175431911	A A	ATCTCTCT others(27): Show ATCTCTCTCTCTCTCTCTCTCTCTCTCCTTCTCTC	intron_variant intron_variant	MODIFIER	HG00323.hp1 HG02486.hp1 HG02723.hp2 others(8): Show HG00323.hp1 HG02486.hp1 HG02723.hp2 HG02886.hp2 HG02895.hp2 HG03041.hp1 HG03239.hp2 HG03490.hp1 HG03490.hp2 NA19030.hp2 NA20129.hp2	a0001 a0002 a0003 others(1): Show a0001 a0002 a0003 a0004	a0001c0002 a0001c0003 a0001c0005 others(7): Show a0001c0002 a0001c0003 a0001c0005 a0001c0016 a0001c0043 a0002c0007 a0002c0008 a0002c0020 a0003c0001 a0004c0019	a0001c0002t0021 a0001c0003t0004 a0001c0005t0034 others(7): Show a0001c0002t0021 a0001c0003t0004 a0001c0005t0034 a0001c0016t0057 a0001c0043t0018 a0002c0007t0045 a0002c0008t0006 a0002c0020t0061 a0003c0001t0002 a0004c0019t0029	a0001c0002t0021g0056 a0001c0003t0004g0064 a0001c0005t0034g0020 others(8): Show a0001c0002t0021g0056 a0001c0003t0004g0064 a0001c0005t0034g0020 a0001c0016t0057g0072 a0001c0043t0018g0055 a0002c0007t0045g0049 a0002c0008t0006g0094 a0002c0008t0006g0115 a0002c0020t0061g0122 a0003c0001t0002g0006 a0004c0019t0029g0042	11	132	0.0833	34	c.-63 others(53): Show c.-63-25135_-63-25134insGAGAGAAGGAGAGAGAGAGAGAGAGA GAGAGAGA	TNR	ENSG00000116147.18	transcript	ENST00000367674.7	protein_coding	2/22			chr1	TogoVar
TNR_chr1_175310194_175748595	175431911	A A	ATCTCTCT others(27): Show ATCTCTCTCTCTCTCTCTCTCTCTCTCTCCTTCTC	intron_variant intron_variant	MODIFIER	HG01069.hp2 HG01243.hp1 HG02055.hp2 others(11): Show HG01069.hp2 HG01243.hp1 HG02055.hp2 HG02109.hp2 HG02486.hp2 HG02559.hp1 HG02630.hp1 HG02922.hp1 HG02970.hp1 HG03195.hp2 HG03453.hp1 NA18522.hp2 NA19043.hp2 NA19240.hp2	a0001 a0002 a0004 others(1): Show a0001 a0002 a0004 a0015	a0001c0002 a0001c0005 a0001c0012 others(6): Show a0001c0002 a0001c0005 a0001c0012 a0001c0013 a0002c0004 a0002c0006 a0002c0008 a0004c0022 a0015c0033	a0001c0002t0063 a0001c0005t0007 a0001c0012t0020 others(7): Show a0001c0002t0063 a0001c0005t0007 a0001c0012t0020 a0001c0012t0056 a0001c0013t0023 a0002c0004t0003 a0002c0006t0042 a0002c0008t0006 a0004c0022t0013 a0015c0033t0009	a0001c0002t0063g0045 a0001c0005t0007g0071 a0001c0012t0020g0082 others(11): Show a0001c0002t0063g0045 a0001c0005t0007g0071 a0001c0012t0020g0082 a0001c0012t0056g0103 a0001c0013t0023g0067 a0002c0004t0003g0012 a0002c0004t0003g0013 a0002c0004t0003g0014 a0002c0004t0003g0086 a0002c0004t0003g0113 a0002c0006t0042g0044 a0002c0008t0006g0062 a0004c0022t0013g0050 a0015c0033t0009g0046	14	132	0.1061	34	c.-63 others(53): Show c.-63-25135_-63-25134insGAGAAGGAGAGAGAGAGAGAGAGAGA GAGAGAGA	TNR	ENSG00000116147.18	transcript	ENST00000367674.7	protein_coding	2/22			chr1	TogoVar
TNR_chr1_175310194_175748595	175640791	G G	GTATATAT others(27): Show GTATATATATATATATATATATACATATATATATA	intron_variant intron_variant	MODIFIER	HG02895.hp2 HG03041.hp1 NA19030.hp1 others(1): Show HG02895.hp2 HG03041.hp1 NA19030.hp1 NA19030.hp2	a0001 a0002 a0001 a0002	a0001c0003 a0001c0010 a0002c0008 a0001c0003 a0001c0010 a0002c0008	a0001c0003t0004 a0001c0010t0035 a0002c0008t0006 a0001c0003t0004 a0001c0010t0035 a0002c0008t0006	a0001c0003t0004g0064 a0001c0010t0035g0095 a0002c0008t0006g0094 others(1): Show a0001c0003t0004g0064 a0001c0010t0035g0095 a0002c0008t0006g0094 a0002c0008t0006g0115	4	132	0.0303	34	c.-16 others(57): Show c.-165+102434_-165+102435insTATATATATATGTATATATATA TATATATATATA	TNR	ENSG00000116147.18	transcript	ENST00000367674.7	protein_coding	1/22			chr1	TogoVar
TNR_chr1_175310194_175748595	175657883	A A	ATATATAT others(27): Show ATATATATATATATATATATATATATATATATATG	intron_variant intron_variant	MODIFIER	NA21309.hp1 NA21309.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0027 a0001c0002t0027	a0001c0002t0027g0002 a0001c0002t0027g0002	1	132	0.0076	34	c.-16 others(55): Show c.-165+85342_-165+85343insCATATATATATATATATATATATA TATATATATA	TNR	ENSG00000116147.18	transcript	ENST00000367674.7	protein_coding	1/22			chr1	TogoVar
TNR_chr1_175310194_175748595	175657883	A A	ATATATAT others(27): Show ATATATATATATATATATATATATATATATATGTG	intron_variant intron_variant	MODIFIER	HG00642.hp2 HG03688.hp2 homoSapiens_chm13v2.hp1 HG00642.hp2 HG03688.hp2 homoSapiens_chm13v2.hp1	a0003 a0003	a0003c0001 a0003c0001	a0003c0001t0002 a0003c0001t0010 a0003c0001t0016 a0003c0001t0002 a0003c0001t0010 a0003c0001t0016	a0003c0001t0002g0029 a0003c0001t0010g0118 a0003c0001t0016g0027 a0003c0001t0002g0029 a0003c0001t0010g0118 a0003c0001t0016g0027	3	132	0.0227	34	c.-16 others(55): Show c.-165+85342_-165+85343insCACATATATATATATATATATATA TATATATATA	TNR	ENSG00000116147.18	transcript	ENST00000367674.7	protein_coding	1/22			chr1	TogoVar
TNS3_chr7_47270154_47587111	47530838	A A	AAAAAAAA others(27): Show AAAAAAAAAAAAAAAATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG02630.hp2 HG02630.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0041 a0001c0002t0041	a0001c0002t0041g0071 a0001c0002t0041g0071	1	196	0.0051	34	c.-26 others(53): Show c.-264-1692_-264-1691insATATATATATATATATATATTTTTTT TTTTTTTT	TNS3	ENSG00000136205.18	transcript	ENST00000311160.14	protein_coding	1/30			chr7	TogoVar
TOB1_chr17_50857223_50871354	50858486	A A	AAAACTAA others(27): Show AAAACTAAAGCACTCTGATCTCAAATGACCTCCTG	downstream_gene_variant downstream_gene_variant	MODIFIER	HG03831.hp2 HG03831.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0001 a0001c0002t0001g0001	1	420	0.0024	34	c.44 others(45): Show c.4493_*4494insCAGGAGGTCATTTGAGATCAGAGTGCTTTAGTTT	TOB1	ENSG00000141232.5	transcript	ENST00000499247.3	protein_coding		3736		chr17	TogoVar
TOMM20L_chr14_58390930_58413702	58394213	A A	ATATATAT others(27): Show ATATATATATATATATATATATTTTTTTTTTTTTT	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02486.hp1 HG02486.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0134 a0001c0001t0001g0134	1	362	0.0028	34	c.-17 others(45): Show c.-1745_-1744insTATATATATATATATATATATTTTTTTTTTTTTT	TOMM20L	ENSG00000196860.8	transcript	ENST00000360945.7	protein_coding		1716		chr14	TogoVar
TOMM20L_chr14_58390930_58413702	58404099	G G	GTGTGTAT others(27): Show GTGTGTATATATATATATATATATATATATATATA	intron_variant intron_variant	MODIFIER	HG00741.hp2 HG01496.hp2 HG02132.hp2 others(6): Show HG00741.hp2 HG01496.hp2 HG02132.hp2 HG02273.hp1 HG02300.hp1 NA18967.hp2 NA18981.hp2 NA18991.hp2 NA19088.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0005 a0001c0001t0001g0082 a0001c0001t0001g0122 others(5): Show a0001c0001t0001g0005 a0001c0001t0001g0082 a0001c0001t0001g0122 a0001c0001t0001g0170 a0001c0001t0001g0191 a0001c0001t0001g0259 a0001c0001t0001g0308 a0001c0001t0001g0326	9	362	0.0249	34	c.262 others(51): Show c.262+1339_262+1340insGTGTATATATATATATATATATATATAT ATATAT	TOMM20L	ENSG00000196860.8	transcript	ENST00000360945.7	protein_coding	3/4		INFO_REALIGN_3_PRIME	chr14	TogoVar
TOMM20L_chr14_58390930_58413702	58404099	G G	GTGTGTGT others(27): Show GTGTGTGTATATATATATATATATATATATATATA	intron_variant intron_variant	MODIFIER	HG00738.hp2 HG01099.hp1 HG01517.hp2 others(3): Show HG00738.hp2 HG01099.hp1 HG01517.hp2 HG02083.hp2 NA18954.hp1 NA18979.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0136 a0001c0001t0001g0218 a0001c0001t0001g0219 others(3): Show a0001c0001t0001g0136 a0001c0001t0001g0218 a0001c0001t0001g0219 a0001c0001t0001g0293 a0001c0001t0001g0322 a0001c0001t0001g0323	6	362	0.0166	34	c.262 others(51): Show c.262+1339_262+1340insGTGTGTATATATATATATATATATATAT ATATAT	TOMM20L	ENSG00000196860.8	transcript	ENST00000360945.7	protein_coding	3/4		INFO_REALIGN_3_PRIME	chr14	TogoVar
TOMM20L_chr14_58390930_58413702	58404119	A A	ATATATAT others(27): Show ATATATATATATATATATATATATATATATTTTTT	intron_variant intron_variant	MODIFIER	NA18957.hp1 NA18957.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0321 a0001c0001t0001g0321	1	362	0.0028	34	c.262 others(51): Show c.262+1359_262+1360insATATATATATATATATATATATATATAT TTTTTT	TOMM20L	ENSG00000196860.8	transcript	ENST00000360945.7	protein_coding	3/4		INFO_REALIGN_3_PRIME	chr14	TogoVar
TOMM20L_chr14_58390930_58413702	58404119	A A	ATATATAT others(27): Show ATATATATATATATATATATATATATATTTTTTTT	intron_variant intron_variant	MODIFIER	HG02602.hp1 HG02602.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0077 a0001c0001t0001g0077	1	362	0.0028	34	c.262 others(51): Show c.262+1359_262+1360insATATATATATATATATATATATATATTT TTTTTT	TOMM20L	ENSG00000196860.8	transcript	ENST00000360945.7	protein_coding	3/4		INFO_REALIGN_3_PRIME	chr14	TogoVar
TOMM20L_chr14_58390930_58413702	58404119	A A	ATATATAT others(27): Show ATATATATATATATATATATATATATTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG00735.hp1 HG01928.hp1 HG02293.hp2 HG00735.hp1 HG01928.hp1 HG02293.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0059 a0001c0001t0001g0099 a0001c0001t0001g0143 a0001c0001t0001g0059 a0001c0001t0001g0099 a0001c0001t0001g0143	3	362	0.0083	34	c.262 others(51): Show c.262+1359_262+1360insATATATATATATATATATATATATTTTT TTTTTT	TOMM20L	ENSG00000196860.8	transcript	ENST00000360945.7	protein_coding	3/4		INFO_REALIGN_3_PRIME	chr14	TogoVar
TOMM20L_chr14_58390930_58413702	58404119	A A	ATATATAT others(27): Show ATATATATATATATATATATATATTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG03139.hp1 HG03139.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0146 a0001c0001t0001g0146	1	362	0.0028	34	c.262 others(51): Show c.262+1359_262+1360insATATATATATATATATATATATTTTTTT TTTTTT	TOMM20L	ENSG00000196860.8	transcript	ENST00000360945.7	protein_coding	3/4		INFO_REALIGN_3_PRIME	chr14	TogoVar
TOMM20L_chr14_58390930_58413702	58404119	A A	ATATATAT others(27): Show ATATATATATATATATATTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	NA19078.hp1 NA19078.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0253 a0001c0001t0001g0253	1	362	0.0028	34	c.262 others(51): Show c.262+1359_262+1360insATATATATATATATATTTTTTTTTTTTT TTTTTT	TOMM20L	ENSG00000196860.8	transcript	ENST00000360945.7	protein_coding	3/4		INFO_REALIGN_3_PRIME	chr14	TogoVar
TOMM22_chr22_38676957_38690421	38689912	C C	CTGTGTGT others(27): Show CTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG	downstream_gene_variant downstream_gene_variant	MODIFIER	NA18991.hp2 NA18991.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0003 a0001c0001t0003g0003	1	384	0.0026	34	c.60 others(45): Show c.6071_*6072insTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG	TOMM22	ENSG00000100216.6	transcript	ENST00000216034.6	protein_coding		4492		chr22	TogoVar
TOMM70_chr3_100358431_100406089	100376369	G G	GTTTTTTT others(27): Show GTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG01952.hp2 HG01952.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0004	a0001c0001t0004g0064 a0001c0001t0004g0064	1	398	0.0025	34	c.109 others(53): Show c.1093-1218_1093-1217insAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAA	TOMM70	ENSG00000154174.8	transcript	ENST00000284320.6	protein_coding	6/11			chr3	TogoVar
TOP3B_chr22_21952025_21987787	21960740	G G	GTGCTTAT others(27): Show GTGCTTATTCTGCGCCTGGAAAATGTGACTTCTAT	intron_variant intron_variant	MODIFIER	HG02109.hp1 HG02922.hp2 HG02109.hp1 HG02922.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0038 a0001c0001t0001g0038	2	348	0.0058	34	c.152 others(51): Show c.1526-325_1526-292dupATAGAAGTCACATTTTCCAGGCGCAGAA TAAGCA	TOP3B	ENSG00000100038.20	transcript	ENST00000357179.10	protein_coding	13/17			chr22	TogoVar
TOPAZ1_chr3_44236886_44337098	44298891	T T	TTATATAT others(27): Show TTATATATATATATATATATATATATATATATATA	intron_variant intron_variant	MODIFIER	NA18945.hp1 NA18945.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0078 a0001c0001t0001g0078	1	258	0.0039	34	c.379 others(53): Show c.3798-5105_3798-5104insATATATATATATATATATATATATAT ATATATAT	TOPAZ1	ENSG00000173769.4	transcript	ENST00000309765.4	protein_coding	12/19		INFO_REALIGN_3_PRIME	chr3	TogoVar

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