Joint Open Genome and Omics Platform (JoGo)

Search by Variant

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Chr

Chromosome name (e.g., chr11).

Snpeff genename

Exact SnpEff gene name.

Sampleids

Target sampleid (e.g. HG02615).

Snpeff haplotype class

Haplotype-annotation class (e.g., ahapid, ahapid+chapid).

Snpeff annotation impact

Exact impact level (e.g., HIGH, MODERATE, LOW).

Snpeff annotation impact detail

Keyword match in SnpEff annotation.

Hapid

One or more haplotype IDs (comma-separated; e.g., a0001, a01, a0001c0001, a01c02, a1c2, a0001c0001t0005, a0001c0001t0005g0018).

Samplehapid

Sample haplotype IDs to include (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

No_hapid

Haplotype IDs to exclude (comma-separated; e.g., a0001, a0002, a0001c0001, a0001c0001t0005, a1, a01).

No_samplehapid

Sample haplotype IDs to exclude (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

Start

Start position (GRCh38).

End

End position (GRCh38).

Minac

Minimum alternate allele count (≥).

Maxac

Maximum alternate allele count (≤).

Minlen

Minimum variant length (≥).

Maxlen

Maximum variant length (≤).

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regionname	pos	ref	alt	annotation	impact	samples	ahapids	achapids	acthapids	actghapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	external
UST_chr6_148742030_149081990	148871117	C C	CCTCTCTC others(27): Show CCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT	intron_variant intron_variant	MODIFIER	HG02809.hp2 HG02809.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0189 a0001c0001t0003g0189	1	210	0.0048	34	c.248 others(53): Show c.248-15840_248-15839insTCTCTCTCTCTCTCTCTCTCTCTCTC TCTCTCTC	UST	ENSG00000111962.8	transcript	ENST00000367463.5	protein_coding	1/7		INFO_REALIGN_3_PRIME	chr6	TogoVar
UTP11_chr1_38007734_38029820	38012048	G G	GTTTTTTT others(27): Show GTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02965.hp1 HG02965.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0012 a0001c0001t0001g0012	1	368	0.0027	34	c.-75 others(43): Show c.-755_-754insTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	UTP11	ENSG00000183520.12	transcript	ENST00000373014.5	protein_coding		685		chr1	TogoVar
UTP20_chr12_101275105_101391618	101310577	C C	CAAAAAAA others(27): Show CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG02976.hp2 HG02976.hp2	a0004 a0004	a0004c0009 a0004c0009	a0004c0009t0001 a0004c0009t0001	a0004c0009t0001g0038 a0004c0009t0001g0038	1	356	0.0028	34	c.223 others(51): Show c.2231+759_2231+760insAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAA	UTP20	ENSG00000120800.5	transcript	ENST00000261637.5	protein_coding	19/61		INFO_REALIGN_3_PRIME	chr12	TogoVar
UTP6_chr17_31855904_31906708	31859356	C C	CGGGGGCG others(27): Show CGGGGGCGGGGCGGCGCAGGGGGCGGGGCGGCGCA	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00323.hp2 HG00642.hp1 HG00735.hp1 others(14): Show HG00323.hp2 HG00642.hp1 HG00735.hp1 HG00741.hp2 HG01346.hp2 HG02015.hp1 HG02056.hp2 HG02273.hp1 HG02698.hp2 NA18950.hp1 NA18970.hp1 NA18973.hp2 NA18986.hp2 NA18998.hp1 NA18998.hp2 NA19007.hp1 NA19060.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0002c0002 a0001c0001 a0002c0002	a0001c0001t0003 a0001c0001t0019 a0002c0002t0001 a0001c0001t0003 a0001c0001t0019 a0002c0002t0001	a0001c0001t0003g0004 a0001c0001t0003g0052 a0001c0001t0003g0057 others(14): Show a0001c0001t0003g0004 a0001c0001t0003g0052 a0001c0001t0003g0057 a0001c0001t0003g0058 a0001c0001t0003g0060 a0001c0001t0003g0066 a0001c0001t0003g0067 a0001c0001t0003g0079 a0001c0001t0003g0178 a0001c0001t0003g0179 a0001c0001t0003g0187 a0001c0001t0019g0076 a0002c0002t0001g0001 a0002c0002t0001g0011 a0002c0002t0001g0118 a0002c0002t0001g0168 a0002c0002t0001g0192	17	324	0.0525	34	c.40 others(45): Show c.4002_*4003insTGCGCCGCCCCGCCCCCTGCGCCGCCCCGCCCCC	UTP6	ENSG00000108651.10	transcript	ENST00000261708.9	protein_coding		1547		chr17	TogoVar
UTRN_chr6_144280335_144858034	144690074	G G	GTTTTTTT others(27): Show GTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG03927.hp2 HG03927.hp2	a0003 a0003	a0003c0004 a0003c0004	a0003c0004t0003 a0003c0004t0003	a0003c0004t0003g0107 a0003c0004t0003g0107	1	128	0.0078	34	c.765 others(53): Show c.7653-9991_7653-9990insTTTTTTTTTTTTTTTTTTTTTTTTTT TTTTTTTT	UTRN	ENSG00000152818.20	transcript	ENST00000367545.8	protein_coding	52/74		INFO_REALIGN_3_PRIME	chr6	TogoVar
UTY_chrY_13243385_13485033	13311594	C C	CAAAAAAA others(27): Show CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG02647.hp1 HG02647.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0088 a0001c0001t0001g0088	1	126	0.0079	34	c.327 others(53): Show c.3277-5345_3277-5344insTTTTTTTTTTTTTTTTTTTTTTTTTT TTTTTTTT	UTY	ENSG00000183878.16	transcript	ENST00000545955.6	protein_coding	21/29			chrY	TogoVar
UVRAG_chr11_75810210_76149232	75949740	T T	TATATATA others(27): Show TATATATATACACACATATGTATACATATATACAC	intron_variant intron_variant	MODIFIER	HG03486.hp1 HG03486.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0033 a0001c0001t0033	a0001c0001t0033g0122 a0001c0001t0033g0122	1	146	0.0069	34	c.594 others(53): Show c.594-11688_594-11655dupTATGTATACATATATACACATATATA TACACACA	UVRAG	ENSG00000198382.9	transcript	ENST00000356136.8	protein_coding	6/14		INFO_REALIGN_3_PRIME	chr11	TogoVar
UVRAG_chr11_75810210_76149232	76053308	A A	AACACACA others(27): Show AACACACACACACACACACACACACACACACACAC	intron_variant intron_variant	MODIFIER	NA18906.hp1 NA18906.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0008 a0001c0001t0008	a0001c0001t0008g0005 a0001c0001t0008g0005	1	146	0.0069	34	c.122 others(55): Show c.1227-12400_1227-12367dupCACACACACACACACACACACACA CACACACACA	UVRAG	ENSG00000198382.9	transcript	ENST00000356136.8	protein_coding	12/14		INFO_REALIGN_3_PRIME	chr11	TogoVar
VAMP1_chr12_6457237_6475677	6461273	G G	GCCTCTGC others(27): Show GCCTCTGCCTTCCTTCACTGTGCACCCTGGGCTCA	downstream_gene_variant downstream_gene_variant	MODIFIER	NA18945.hp2 NA18945.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0006 a0001c0001t0002g0006	1	446	0.0022	34	c.31 others(45): Show c.3163_*3196dupTGAGCCCAGGGTGCACAGTGAAGGAAGGCAGAGG	VAMP1	ENSG00000139190.17	transcript	ENST00000396308.4	protein_coding		963		chr12	TogoVar
VASP_chr19_45502479_45531983	45513468	C C	CTTTTTTT others(27): Show CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	NA18965.hp2 NA19090.hp2 NA18965.hp2 NA19090.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0003 a0001c0002t0003	a0001c0002t0003g0112 a0001c0002t0003g0296 a0001c0002t0003g0112 a0001c0002t0003g0296	2	406	0.0049	34	c.6-4 others(47): Show c.6-4174_6-4173insTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT TT	VASP	ENSG00000125753.15	transcript	ENST00000245932.11	protein_coding	1/12		INFO_REALIGN_3_PRIME	chr19	TogoVar
VAV2_chr9_133756894_133997324	133827484	A A	ACGGGCAT others(27): Show ACGGGCATCGCCAACTACTGCTGTGCCCACTGAGG	intron_variant intron_variant	MODIFIER	HG00735.hp2 HG00735.hp2	a0003 a0003	a0003c0026 a0003c0026	a0003c0026t0002 a0003c0026t0002	a0003c0026t0002g0016 a0003c0026t0002g0016	1	200	0.0050	34	c.449 others(51): Show c.449+6787_449+6788insCCTCAGTGGGCACAGCAGTAGTTGGCGA TGCCCG	VAV2	ENSG00000160293.17	transcript	ENST00000371850.8	protein_coding	4/29			chr9	TogoVar
VAV3_chr1_107566161_107970180	107753513	C C	CACACATA others(27): Show CACACATATATATACACACATATATATATACACAT	intron_variant intron_variant	MODIFIER	HG02970.hp1 HG02970.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0007 a0001c0001t0007	a0001c0001t0007g0052 a0001c0001t0007g0052	1	210	0.0048	34	c.117 others(53): Show c.1173+1913_1173+1914insATGTGTATATATATATGTGTGTATAT ATATGTGT	VAV3	ENSG00000134215.16	transcript	ENST00000370056.9	protein_coding	12/26			chr1	TogoVar
VAV3_chr1_107566161_107970180	107753513	C C	CACACATA others(27): Show CACACATATATATACACACATATATATATACATAT	intron_variant intron_variant	MODIFIER	HG02056.hp1 HG02083.hp2 HG03453.hp1 others(4): Show HG02056.hp1 HG02083.hp2 HG03453.hp1 NA18951.hp1 NA19002.hp2 NA19065.hp2 NA19072.hp2	a0001 a0004 a0001 a0004	a0001c0001 a0004c0005 a0001c0001 a0004c0005	a0001c0001t0001 a0001c0001t0002 a0001c0001t0006 others(3): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0006 a0001c0001t0008 a0004c0005t0002 a0004c0005t0011	a0001c0001t0001g0118 a0001c0001t0002g0131 a0001c0001t0002g0184 others(4): Show a0001c0001t0001g0118 a0001c0001t0002g0131 a0001c0001t0002g0184 a0001c0001t0006g0011 a0001c0001t0008g0196 a0004c0005t0002g0179 a0004c0005t0011g0021	7	210	0.0333	34	c.117 others(53): Show c.1173+1913_1173+1914insATATGTATATATATATGTGTGTATAT ATATGTGT	VAV3	ENSG00000134215.16	transcript	ENST00000370056.9	protein_coding	12/26			chr1	TogoVar
VAV3_chr1_107566161_107970180	107753513	C C	CACACATA others(27): Show CACACATATATATACACACATATATATATATACAT	intron_variant intron_variant	MODIFIER	HG00280.hp2 HG00735.hp1 HG01081.hp2 others(22): Show HG00280.hp2 HG00735.hp1 HG01081.hp2 HG01175.hp1 HG01192.hp2 HG01515.hp1 HG01516.hp1 HG01884.hp2 HG02055.hp2 HG02572.hp1 HG02630.hp1 HG02683.hp2 HG02717.hp1 HG02886.hp2 HG02896.hp1 HG02922.hp1 HG02965.hp2 HG02976.hp2 HG03041.hp1 HG03209.hp2 HG03490.hp1 HG03492.hp2 HG03516.hp1 NA18906.hp1 NA20129.hp2	a0001 a0004 a0008 a0001 a0004 a0008	a0001c0001 a0001c0008 a0004c0005 others(1): Show a0001c0001 a0001c0008 a0004c0005 a0008c0015	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(11): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 a0001c0001t0005 a0001c0001t0007 a0001c0001t0009 a0001c0001t0010 a0001c0001t0014 a0001c0001t0017 a0001c0001t0019 a0001c0008t0003 a0004c0005t0001 a0008c0015t0013	a0001c0001t0001g0142 a0001c0001t0001g0208 a0001c0001t0002g0140 others(22): Show a0001c0001t0001g0142 a0001c0001t0001g0208 a0001c0001t0002g0140 a0001c0001t0002g0157 a0001c0001t0002g0198 a0001c0001t0002g0201 a0001c0001t0002g0207 a0001c0001t0003g0039 a0001c0001t0003g0043 a0001c0001t0003g0044 a0001c0001t0003g0047 a0001c0001t0003g0053 a0001c0001t0003g0054 a0001c0001t0004g0034 a0001c0001t0005g0206 a0001c0001t0007g0088 a0001c0001t0009g0010 a0001c0001t0010g0028 a0001c0001t0014g0077 a0001c0001t0017g0120 a0001c0001t0017g0121 a0001c0001t0019g0009 a0001c0008t0003g0049 a0004c0005t0001g0124 a0008c0015t0013g0041	25	210	0.1191	34	c.117 others(53): Show c.1173+1913_1173+1914insATGTATATATATATATGTGTGTATAT ATATGTGT	VAV3	ENSG00000134215.16	transcript	ENST00000370056.9	protein_coding	12/26			chr1	TogoVar
VAV3_chr1_107566161_107970180	107753513	C C	CACATATA others(27): Show CACATATATATACACACATATATACATATACATAT	intron_variant intron_variant	MODIFIER	HG03209.hp1 HG03225.hp2 HG03209.hp1 HG03225.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0004	a0001c0001t0004g0032 a0001c0001t0004g0042 a0001c0001t0004g0032 a0001c0001t0004g0042	2	210	0.0095	34	c.117 others(53): Show c.1173+1913_1173+1914insATATGTATATGTATATATGTGTGTAT ATATATGT	VAV3	ENSG00000134215.16	transcript	ENST00000370056.9	protein_coding	12/26			chr1	TogoVar
VAV3_chr1_107566161_107970180	107753549	T T	TATATATA others(27): Show TATATATATATATATATATATATACACACACACAC	intron_variant intron_variant	MODIFIER	NA19010.hp2 NA19010.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0004	a0001c0001t0004g0095 a0001c0001t0004g0095	1	210	0.0048	34	c.117 others(53): Show c.1173+1877_1173+1878insGTGTGTGTGTGTATATATATATATAT ATATATAT	VAV3	ENSG00000134215.16	transcript	ENST00000370056.9	protein_coding	12/26			chr1	TogoVar
VAV3_chr1_107566161_107970180	107952468	T T	TTATATAT others(27): Show TTATATATATATATATATATATATATATATATATA	intron_variant intron_variant	MODIFIER	HG00423.hp1 HG06807.hp2 HG00423.hp1 HG06807.hp2	a0001 a0012 a0001 a0012	a0001c0001 a0012c0011 a0001c0001 a0012c0011	a0001c0001t0004 a0012c0011t0005 a0001c0001t0004 a0012c0011t0005	a0001c0001t0004g0102 a0012c0011t0005g0115 a0001c0001t0004g0102 a0012c0011t0005g0115	2	210	0.0095	34	c.204 others(53): Show c.204+12197_204+12198insTATATATATATATATATATATATATA TATATATA	VAV3	ENSG00000134215.16	transcript	ENST00000370056.9	protein_coding	1/26			chr1	TogoVar
VAV3_chr1_107566161_107970180	107952485	T T	TATATATA others(27): Show TATATATATATATATATATATATATATATACACAC	intron_variant intron_variant	MODIFIER	HG02132.hp1 HG02132.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0006 a0001c0001t0006	a0001c0001t0006g0004 a0001c0001t0006g0004	1	210	0.0048	34	c.204 others(53): Show c.204+12180_204+12181insGTGTGTATATATATATATATATATAT ATATATAT	VAV3	ENSG00000134215.16	transcript	ENST00000370056.9	protein_coding	1/26			chr1	TogoVar
VAV3_chr1_107566161_107970180	107952485	T T	TATATATA others(27): Show TATATATATATATATATATATATATATATATACAC	intron_variant intron_variant	MODIFIER	HG00544.hp2 NA19030.hp1 HG00544.hp2 NA19030.hp1	a0002 a0006 a0002 a0006	a0002c0014 a0006c0016 a0002c0014 a0006c0016	a0002c0014t0005 a0006c0016t0009 a0002c0014t0005 a0006c0016t0009	a0002c0014t0005g0116 a0006c0016t0009g0003 a0002c0014t0005g0116 a0006c0016t0009g0003	2	210	0.0095	34	c.204 others(53): Show c.204+12180_204+12181insGTGTATATATATATATATATATATAT ATATATAT	VAV3	ENSG00000134215.16	transcript	ENST00000370056.9	protein_coding	1/26			chr1	TogoVar
VAX2_chr2_70895576_70938446	70922642	C C	CAGGCCGG others(27): Show CAGGCCGGGAGGAGGGGCAGGCCGGGAGGAGGGGA	intron_variant intron_variant	MODIFIER	HG02257.hp1 HG02572.hp1 HG02922.hp1 others(2): Show HG02257.hp1 HG02572.hp1 HG02922.hp1 HG02970.hp2 NA18906.hp2	a0001 a0001	a0001c0001 a0001c0003 a0001c0001 a0001c0003	a0001c0001t0001 a0001c0003t0001 a0001c0001t0001 a0001c0003t0001	a0001c0001t0001g0037 a0001c0001t0001g0203 a0001c0001t0001g0204 others(1): Show a0001c0001t0001g0037 a0001c0001t0001g0203 a0001c0001t0001g0204 a0001c0003t0001g0301	5	426	0.0117	34	c.435 others(51): Show c.435+1366_435+1399dupAGGAGGGGCAGGCCGGGAGGAGGGGAAG GCCGGG	VAX2	ENSG00000116035.4	transcript	ENST00000234392.3	protein_coding	2/2		INFO_REALIGN_3_PRIME	chr2	TogoVar
VCPIP1_chr8_66623487_66672231	66638970	C C	CTCTCTCT others(27): Show CTCTCTCTCTCTCTCTATATATATATATATATATA	intron_variant intron_variant	MODIFIER	HG02523.hp1 HG03195.hp2 HG02523.hp1 HG03195.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0008 a0001c0002t0009 a0001c0002t0008 a0001c0002t0009	a0001c0002t0008g0217 a0001c0002t0009g0221 a0001c0002t0008g0217 a0001c0002t0009g0221	2	258	0.0078	34	c.279 others(53): Show c.2798-3599_2798-3598insTATATATATATATATATATAGAGAGA GAGAGAGA	VCPIP1	ENSG00000175073.8	transcript	ENST00000310421.5	protein_coding	2/2			chr8	TogoVar
VCPIP1_chr8_66623487_66672231	66638970	C C	CTCTCTCT others(27): Show CTCTCTCTCTCTCTCTCTATATATATATATATATA	intron_variant intron_variant	MODIFIER	HG02897.hp1 HG02897.hp1	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0002 a0001c0003t0002	a0001c0003t0002g0012 a0001c0003t0002g0012	1	258	0.0039	34	c.279 others(53): Show c.2798-3599_2798-3598insTATATATATATATATATAGAGAGAGA GAGAGAGA	VCPIP1	ENSG00000175073.8	transcript	ENST00000310421.5	protein_coding	2/2			chr8	TogoVar
VCPIP1_chr8_66623487_66672231	66638970	C C	CTCTCTCT others(27): Show CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTATATA	intron_variant intron_variant	MODIFIER	NA18982.hp2 NA18982.hp2	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0002 a0001c0003t0002	a0001c0003t0002g0022 a0001c0003t0002g0022	1	258	0.0039	34	c.279 others(53): Show c.2798-3599_2798-3598insTATATAGAGAGAGAGAGAGAGAGAGA GAGAGAGA	VCPIP1	ENSG00000175073.8	transcript	ENST00000310421.5	protein_coding	2/2			chr8	TogoVar
VCPIP1_chr8_66623487_66672231	66638970	C C	CTCTCTCT others(27): Show CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTATA	intron_variant intron_variant	MODIFIER	NA18961.hp1 NA18981.hp1 NA18994.hp2 NA18961.hp1 NA18981.hp1 NA18994.hp2	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0002 a0001c0003t0012 a0001c0003t0002 a0001c0003t0012	a0001c0003t0002g0002 a0001c0003t0012g0014 a0001c0003t0002g0002 a0001c0003t0012g0014	3	258	0.0116	34	c.279 others(53): Show c.2798-3599_2798-3598insTATAGAGAGAGAGAGAGAGAGAGAGA GAGAGAGA	VCPIP1	ENSG00000175073.8	transcript	ENST00000310421.5	protein_coding	2/2			chr8	TogoVar
VCX3A_chrX_6528618_6540118	6533375	T T	TCCTCCCT others(27): Show TCCTCCCTCCCTCCCTCCCCACACACCTCTTCCTC	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01167.hp1 HG02886.hp1 homoSapiens_chm13v2.hp1 HG01167.hp1 HG02886.hp1 homoSapiens_chm13v2.hp1	a0001 a0004 a0021 a0001 a0004 a0021	a0001c0001 a0004c0005 a0021c0024 a0001c0001 a0004c0005 a0021c0024	a0001c0001t0002 a0004c0005t0002 a0021c0024t0006 a0001c0001t0002 a0004c0005t0002 a0021c0024t0006	a0001c0001t0002g0001 a0004c0005t0002g0013 a0021c0024t0006g0048 a0001c0001t0002g0001 a0004c0005t0002g0013 a0021c0024t0006g0048	3	74	0.0405	34	c.36 others(43): Show c.369_*370insGAGGAAGAGGTGTGTGGGGAGGGAGGGAGGGAGG	VCX3A	ENSG00000169059.13	transcript	ENST00000381089.7	protein_coding		242		chrX	TogoVar
VCX3B_chrX_8459830_8471510	8467005	A A	AGGGAGGG others(27): Show AGGGAGGGGAGGGAGGGAGGAAGAGGTGGTGTGTG	downstream_gene_variant downstream_gene_variant	MODIFIER	NA19068.hp1 NA19068.hp1	a0003 a0003	a0003c0003 a0003c0003	a0003c0003t0003 a0003c0003t0003	a0003c0003t0003g0029 a0003c0003t0003g0029	1	271	0.0037	34	c.62 others(43): Show c.622_*623insGGGAGGGGAGGGAGGGAGGAAGAGGTGGTGTGTG	VCX3B	ENSG00000205642.11	transcript	ENST00000381032.6	protein_coding		496		chrX	TogoVar
VCX3B_chrX_8459830_8471510	8467033	T T	TGGGGAGG others(27): Show TGGGGAGGGAGGGAGGGAGGAAGAGGTGGGAGGGA	downstream_gene_variant downstream_gene_variant	MODIFIER	NA19078.hp2 NA19078.hp2	a0072 a0072	a0072c0084 a0072c0084	a0072c0084t0003 a0072c0084t0003	a0072c0084t0003g0011 a0072c0084t0003g0011	1	271	0.0037	34	c.65 others(43): Show c.650_*651insGGGGAGGGAGGGAGGGAGGAAGAGGTGGGAGGGA	VCX3B	ENSG00000205642.11	transcript	ENST00000381032.6	protein_coding		524		chrX	TogoVar
VCX3B_chrX_8459830_8471510	8467242	G G	GGGGAGGG others(27): Show GGGGAGGGAGGGAGGGAGGAAGAGGTGTGTGGGGA	downstream_gene_variant downstream_gene_variant	MODIFIER	NA19065.hp1 NA19065.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0007 a0001c0001t0001g0007	1	271	0.0037	34	c.85 others(43): Show c.859_*860insGGGAGGGAGGGAGGGAGGAAGAGGTGTGTGGGGA	VCX3B	ENSG00000205642.11	transcript	ENST00000381032.6	protein_coding		733		chrX	TogoVar
VCX3B_chrX_8459830_8471510	8468736	G G	GTTATATA others(27): Show GTTATATATATAAATATTTATATTCTATATAGATT	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02809.hp2 NA19066.hp1 HG02809.hp2 NA19066.hp1	a0002 a0047 a0002 a0047	a0002c0002 a0047c0041 a0002c0002 a0047c0041	a0002c0002t0002 a0047c0041t0023 a0002c0002t0002 a0047c0041t0023	a0002c0002t0002g0006 a0047c0041t0023g0033 a0002c0002t0002g0006 a0047c0041t0023g0033	2	271	0.0074	34	c.23 others(45): Show c.2353_*2354insTTATATATATAAATATTTATATTCTATATAGATT	VCX3B	ENSG00000205642.11	transcript	ENST00000381032.6	protein_coding		2227		chrX	TogoVar
VCX3B_chrX_8459830_8471510	8468873	T T	TTATATAT others(27): Show TTATATATAAATATTTATATTCTATATAGATTTTA	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01243.hp1 HG02257.hp2 HG03195.hp1 others(2): Show HG01243.hp1 HG02257.hp2 HG03195.hp1 HG03579.hp1 NA19078.hp2	a0011 a0067 a0072 a0011 a0067 a0072	a0011c0019 a0067c0079 a0072c0084 a0011c0019 a0067c0079 a0072c0084	a0011c0019t0008 a0067c0079t0008 a0072c0084t0003 a0011c0019t0008 a0067c0079t0008 a0072c0084t0003	a0011c0019t0008g0001 a0067c0079t0008g0001 a0072c0084t0003g0011 a0011c0019t0008g0001 a0067c0079t0008g0001 a0072c0084t0003g0011	5	271	0.0185	34	c.24 others(45): Show c.2490_*2491insTATATATAAATATTTATATTCTATATAGATTTTA	VCX3B	ENSG00000205642.11	transcript	ENST00000381032.6	protein_coding		2364		chrX	TogoVar
VCX_chrX_7838171_7849143	7844242	G G	GGGGAGGG others(27): Show GGGGAGGGAGGGAGGGAGGAAGAGGTGTGTGGGGA	downstream_gene_variant downstream_gene_variant	MODIFIER	NA18941.hp2 NA18941.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0001 a0002c0002t0001	a0002c0002t0001g0001 a0002c0002t0001g0001	1	341	0.0029	34	c.22 others(43): Show c.226_*227insGGGAGGGAGGGAGGGAGGAAGAGGTGTGTGGGGA	VCX	ENSG00000182583.13	transcript	ENST00000688183.1	protein_coding		100		chrX	TogoVar
VCX_chrX_7838171_7849143	7844293	A A	AGGTGTGT others(27): Show AGGTGTGTGGGGAGGGAGGGAGGGAGGGAGGAAGC	downstream_gene_variant downstream_gene_variant	MODIFIER	NA18982.hp1 NA18982.hp1	a0069 a0069	a0069c0072 a0069c0072	a0069c0072t0001 a0069c0072t0001	a0069c0072t0001g0001 a0069c0072t0001g0001	1	341	0.0029	34	c.27 others(43): Show c.277_*278insGGTGTGTGGGGAGGGAGGGAGGGAGGGAGGAAGC	VCX	ENSG00000182583.13	transcript	ENST00000688183.1	protein_coding		151		chrX	TogoVar
VEGFB_chr11_64229584_64244264	64237085	A A	AAGAGAGA others(27): Show AAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG	intron_variant intron_variant	MODIFIER	HG02809.hp2 HG06807.hp2 NA20300.hp2 HG02809.hp2 HG06807.hp2 NA20300.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0009 a0001c0001t0001 a0001c0001t0009	a0001c0001t0001g0029 a0001c0001t0009g0037 a0001c0001t0001g0029 a0001c0001t0009g0037	3	328	0.0092	34	c.375 others(47): Show c.375-97_375-64dupAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG AG	VEGFB	ENSG00000173511.10	transcript	ENST00000309422.7	protein_coding	4/6		INFO_REALIGN_3_PRIME	chr11	TogoVar
VEGFC_chr4_176678538_176797922	176740449	G G	GAGTATAT others(27): Show GAGTATATAGAGTATATATAACTATATATTCTATA	intron_variant intron_variant	MODIFIER	HG00642.hp2 HG00735.hp2 HG01255.hp1 others(25): Show HG00642.hp2 HG00735.hp2 HG01255.hp1 HG01361.hp1 HG01884.hp1 HG01891.hp1 HG01943.hp2 HG02148.hp2 HG02273.hp1 HG02300.hp2 HG02451.hp1 HG03041.hp1 HG03139.hp2 HG03453.hp2 HG03471.hp2 HG03654.hp1 HG03688.hp2 HG03927.hp1 HG04115.hp2 NA18942.hp2 NA18998.hp1 NA18998.hp2 NA19000.hp2 NA19003.hp1 NA19010.hp1 NA19074.hp1 NA19084.hp1 NA19088.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0009 a0001c0001t0001 a0001c0001t0002 a0001c0001t0009	a0001c0001t0001g0029 a0001c0001t0001g0030 a0001c0001t0001g0079 others(25): Show a0001c0001t0001g0029 a0001c0001t0001g0030 a0001c0001t0001g0079 a0001c0001t0001g0080 a0001c0001t0001g0090 a0001c0001t0001g0132 a0001c0001t0002g0184 a0001c0001t0002g0185 a0001c0001t0002g0186 a0001c0001t0002g0187 a0001c0001t0002g0188 a0001c0001t0002g0192 a0001c0001t0002g0193 a0001c0001t0002g0196 a0001c0001t0002g0197 a0001c0001t0002g0199 a0001c0001t0002g0200 a0001c0001t0002g0201 a0001c0001t0002g0202 a0001c0001t0002g0203 a0001c0001t0002g0204 a0001c0001t0002g0205 a0001c0001t0002g0206 a0001c0001t0002g0207 a0001c0001t0002g0208 a0001c0001t0002g0209 a0001c0001t0002g0210 a0001c0001t0009g0006	28	224	0.1250	34	c.148 others(53): Show c.148-10704_148-10703insTATAGAATATATAGTTATATATACTC TATATACT	VEGFC	ENSG00000150630.4	transcript	ENST00000618562.2	protein_coding	1/6			chr4	TogoVar
VEPH1_chr3_157254742_157508416	157304038	T T	TATATATA others(27): Show TATATATATATATATATATATATACACACACACAC	intron_variant intron_variant	MODIFIER	HG01109.hp2 HG03540.hp2 HG01109.hp2 HG03540.hp2	a0001 a0003 a0001 a0003	a0001c0001 a0003c0002 a0001c0001 a0003c0002	a0001c0001t0001 a0003c0002t0001 a0001c0001t0001 a0003c0002t0001	a0001c0001t0001g0120 a0003c0002t0001g0093 a0001c0001t0001g0120 a0003c0002t0001g0093	2	304	0.0066	34	c.201 others(53): Show c.2010+9582_2010+9583insGTGTGTGTGTGTATATATATATATAT ATATATAT	VEPH1	ENSG00000197415.12	transcript	ENST00000362010.7	protein_coding	11/13			chr3	TogoVar
VEPH1_chr3_157254742_157508416	157304038	T T	TATATATA others(27): Show TATATATATATATATATATATATATACACACACAC	intron_variant intron_variant	MODIFIER	HG01255.hp2 HG01255.hp2	a0003 a0003	a0003c0002 a0003c0002	a0003c0002t0001 a0003c0002t0001	a0003c0002t0001g0097 a0003c0002t0001g0097	1	304	0.0033	34	c.201 others(53): Show c.2010+9582_2010+9583insGTGTGTGTGTATATATATATATATAT ATATATAT	VEPH1	ENSG00000197415.12	transcript	ENST00000362010.7	protein_coding	11/13			chr3	TogoVar
VEPH1_chr3_157254742_157508416	157304038	T T	TATATATA others(27): Show TATATATATATATATATATATATATATACACACAC	intron_variant intron_variant	MODIFIER	NA18954.hp1 NA18954.hp1	a0002 a0002	a0002c0003 a0002c0003	a0002c0003t0002 a0002c0003t0002	a0002c0003t0002g0047 a0002c0003t0002g0047	1	304	0.0033	34	c.201 others(53): Show c.2010+9582_2010+9583insGTGTGTGTATATATATATATATATAT ATATATAT	VEPH1	ENSG00000197415.12	transcript	ENST00000362010.7	protein_coding	11/13			chr3	TogoVar
VEPH1_chr3_157254742_157508416	157304038	T T	TATATATA others(27): Show TATATATATATATATATATATATATATATACACAC	intron_variant intron_variant	MODIFIER	HG00323.hp2 HG00597.hp1 HG00673.hp1 others(14): Show HG00323.hp2 HG00597.hp1 HG00673.hp1 HG01099.hp1 HG01109.hp1 HG01496.hp1 HG03239.hp1 HG03704.hp1 NA18970.hp2 NA18983.hp2 NA18988.hp1 NA18993.hp1 NA18995.hp2 NA19000.hp2 NA19055.hp1 NA19065.hp2 NA19066.hp2	a0002 a0004 a0018 a0002 a0004 a0018	a0002c0003 a0004c0007 a0018c0026 a0002c0003 a0004c0007 a0018c0026	a0002c0003t0002 a0004c0007t0001 a0018c0026t0002 a0002c0003t0002 a0004c0007t0001 a0018c0026t0002	a0002c0003t0002g0006 a0002c0003t0002g0036 a0002c0003t0002g0061 others(14): Show a0002c0003t0002g0006 a0002c0003t0002g0036 a0002c0003t0002g0061 a0002c0003t0002g0071 a0002c0003t0002g0100 a0002c0003t0002g0118 a0002c0003t0002g0124 a0002c0003t0002g0133 a0002c0003t0002g0172 a0002c0003t0002g0175 a0002c0003t0002g0176 a0002c0003t0002g0197 a0002c0003t0002g0199 a0002c0003t0002g0240 a0002c0003t0002g0292 a0004c0007t0001g0285 a0018c0026t0002g0074	17	304	0.0559	34	c.201 others(53): Show c.2010+9582_2010+9583insGTGTGTATATATATATATATATATAT ATATATAT	VEPH1	ENSG00000197415.12	transcript	ENST00000362010.7	protein_coding	11/13			chr3	TogoVar
VEPH1_chr3_157254742_157508416	157304038	T T	TATATATA others(27): Show TATATATATATATATATATATATATATATATACAC	intron_variant intron_variant	MODIFIER	NA18974.hp1 NA18974.hp1	a0003 a0003	a0003c0002 a0003c0002	a0003c0002t0002 a0003c0002t0002	a0003c0002t0002g0128 a0003c0002t0002g0128	1	304	0.0033	34	c.201 others(53): Show c.2010+9582_2010+9583insGTGTATATATATATATATATATATAT ATATATAT	VEPH1	ENSG00000197415.12	transcript	ENST00000362010.7	protein_coding	11/13			chr3	TogoVar
VEPH1_chr3_157254742_157508416	157304038	T T	TATATATA others(27): Show TATATATATATATATATATATATATATATATATAC	intron_variant intron_variant	MODIFIER	HG02109.hp1 NA18956.hp2 NA19005.hp1 HG02109.hp1 NA18956.hp2 NA19005.hp1	a0001 a0003 a0001 a0003	a0001c0006 a0003c0002 a0001c0006 a0003c0002	a0001c0006t0002 a0003c0002t0002 a0001c0006t0002 a0003c0002t0002	a0001c0006t0002g0018 a0003c0002t0002g0121 a0003c0002t0002g0145 a0001c0006t0002g0018 a0003c0002t0002g0121 a0003c0002t0002g0145	3	304	0.0099	34	c.201 others(53): Show c.2010+9582_2010+9583insGTATATATATATATATATATATATAT ATATATAT	VEPH1	ENSG00000197415.12	transcript	ENST00000362010.7	protein_coding	11/13			chr3	TogoVar
VGLL4_chr3_11551069_11648915	11627230	A A	ACACACAC others(27): Show ACACACACACACACACACACTCTCTCTCTCTCTCT	intron_variant intron_variant	MODIFIER	HG00609.hp1 HG02273.hp2 HG03654.hp1 others(1): Show HG00609.hp1 HG02273.hp2 HG03654.hp1 HG03834.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0002c0003 a0002c0009 a0001c0001 a0002c0003 a0002c0009	a0001c0001t0001 a0002c0003t0002 a0002c0009t0001 a0001c0001t0001 a0002c0003t0002 a0002c0009t0001	a0001c0001t0001g0176 a0001c0001t0001g0189 a0002c0003t0002g0282 others(1): Show a0001c0001t0001g0176 a0001c0001t0001g0189 a0002c0003t0002g0282 a0002c0009t0001g0066	4	388	0.0103	34	c.82+ others(51): Show c.82+16206_82+16207insAGAGAGAGAGAGAGAGTGTGTGTGTGTG TGTGTG	VGLL4	ENSG00000144560.16	transcript	ENST00000430365.7	protein_coding	1/4			chr3	TogoVar
VILL_chr3_37985786_38012185	38007400	G G	GACACACA others(27): Show GACACACACACACACACACACACACACACACACAC	downstream_gene_variant downstream_gene_variant	MODIFIER	NA18959.hp2 NA18959.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0004 a0001c0001t0001g0004	1	324	0.0031	34	c.34 others(43): Show c.345_*346insACACACACACACACACACACACACACACACACAC	VILL	ENSG00000136059.16	transcript	ENST00000383759.7	protein_coding		216		chr3	TogoVar
VIPR2_chr7_159023175_159149867	159066071	C C	CGGGATTC others(27): Show CGGGATTCCAGGATGCCTGTTCCTGCAGCGTCCGT	intron_variant intron_variant	MODIFIER	HG01106.hp2 HG01255.hp1 HG01361.hp1 others(2): Show HG01106.hp2 HG01255.hp1 HG01361.hp1 HG02293.hp2 HG02735.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0021 a0001c0001t0001 a0001c0001t0021	a0001c0001t0001g0099 a0001c0001t0001g0295 a0001c0001t0001g0296 others(2): Show a0001c0001t0001g0099 a0001c0001t0001g0295 a0001c0001t0001g0296 a0001c0001t0001g0297 a0001c0001t0021g0298	5	336	0.0149	34	c.358 others(51): Show c.358-7527_358-7494dupACGGACGCTGCAGGAACAGGCATCCTGG AATCCC	VIPR2	ENSG00000106018.14	transcript	ENST00000262178.7	protein_coding	4/12			chr7	TogoVar
VIPR2_chr7_159023175_159149867	159066395	C C	CTCCTGCA others(27): Show CTCCTGCAGCGTCCGTGGGATTCCAGGATGCCTAT	intron_variant intron_variant	MODIFIER	HG01106.hp2 HG01255.hp1 HG01361.hp1 others(11): Show HG01106.hp2 HG01255.hp1 HG01361.hp1 HG01952.hp1 HG02293.hp2 HG02559.hp2 HG02723.hp2 HG02735.hp2 HG02922.hp1 HG02970.hp1 HG03098.hp2 HG03130.hp2 HG03516.hp1 HG06807.hp1	a0001 a0001	a0001c0001 a0001c0005 a0001c0009 others(1): Show a0001c0001 a0001c0005 a0001c0009 a0001c0010	a0001c0001t0001 a0001c0001t0021 a0001c0005t0008 others(4): Show a0001c0001t0001 a0001c0001t0021 a0001c0005t0008 a0001c0005t0013 a0001c0009t0007 a0001c0010t0023 a0001c0010t0037	a0001c0001t0001g0099 a0001c0001t0001g0295 a0001c0001t0001g0296 others(11): Show a0001c0001t0001g0099 a0001c0001t0001g0295 a0001c0001t0001g0296 a0001c0001t0001g0297 a0001c0001t0021g0298 a0001c0005t0008g0006 a0001c0005t0008g0312 a0001c0005t0008g0313 a0001c0005t0008g0314 a0001c0005t0013g0153 a0001c0009t0007g0152 a0001c0010t0023g0011 a0001c0010t0023g0016 a0001c0010t0037g0013	14	336	0.0417	34	c.358 others(51): Show c.358-7818_358-7817insATAGGCATCCTGGAATCCCACGGACGCT GCAGGA	VIPR2	ENSG00000106018.14	transcript	ENST00000262178.7	protein_coding	4/12			chr7	TogoVar
VIRMA_chr8_94482689_94558469	94556364	T T	TTATATAT others(27): Show TTATATATATATATATATATATATATATATATATA	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01069.hp1 HG01071.hp2 HG01069.hp1 HG01071.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0017 a0001c0001t0001g0017	2	346	0.0058	34	c.-29 others(45): Show c.-2918_-2917insTATATATATATATATATATATATATATATATATA	VIRMA	ENSG00000164944.12	transcript	ENST00000297591.10	protein_coding		2896		chr8	TogoVar
VMAC_chr19_5899872_5915853	5907610	T T	TAAAAAAA others(27): Show TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG02148.hp1 HG02148.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0066 a0001c0001t0001g0066	1	386	0.0026	34	c.192 others(51): Show c.192-1188_192-1187insAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAA	VMAC	ENSG00000187650.4	transcript	ENST00000339485.4	protein_coding	1/1		INFO_REALIGN_3_PRIME	chr19	TogoVar
VN1R1_chr19_57449790_57462140	57457933	A A	AGTGTGTG others(27): Show AGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00597.hp1 HG00597.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0000 a0001c0001t0002g0000	1	430	0.0023	34	c.-14 others(45): Show c.-1448_-1447insACACACACACACACACACACACACACACACACAC	VN1R1	ENSG00000178201.5	transcript	ENST00000321039.5	protein_coding		794		chr19	TogoVar
VNN1_chr6_132675849_132719055	132717176	A A	AAAAAAAA others(27): Show AAAAAAAAAAGAAAGAAAGAAAGAAAGAAAGAAAG	upstream_gene_variant upstream_gene_variant	MODIFIER	NA19030.hp1 NA19030.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0049 a0001c0001t0001g0049	1	418	0.0024	34	c.-31 others(45): Show c.-3142_-3141insCTTTCTTTCTTTCTTTCTTTCTTTCTTTTTTTTT	VNN1	ENSG00000112299.8	transcript	ENST00000367928.5	protein_coding		3122		chr6	TogoVar
VNN2_chr6_132738870_132762904	132758039	C C	CTTCTTCT others(27): Show CTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCT	upstream_gene_variant upstream_gene_variant	MODIFIER	HG03225.hp2 NA20129.hp2 HG03225.hp2 NA20129.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0005 a0001c0001t0001 a0001c0001t0005	a0001c0001t0001g0016 a0001c0001t0005g0033 a0001c0001t0001g0016 a0001c0001t0005g0033	2	436	0.0046	34	c.-15 others(43): Show c.-157_-156insAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAA	VNN2	ENSG00000112303.14	transcript	ENST00000326499.11	protein_coding		136		chr6	TogoVar
VPS13B_chr8_99008274_99882580	99849917	A A	ATACATAA others(27): Show ATACATAAGTACGCATGTATGTACTTATACATACC	intron_variant intron_variant	MODIFIER	HG02080.hp1 HG02300.hp1 HG02080.hp1 HG02300.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0005 a0001c0002t0001g0042 a0001c0002t0001g0005 a0001c0002t0001g0042	2	134	0.0149	34	c.100 others(55): Show c.10061+1329_10061+1362dupCTACATAAGTACGCATGTATGTAC TTATACATAC	VPS13B	ENSG00000132549.20	transcript	ENST00000357162.7	protein_coding	55/61		INFO_REALIGN_3_PRIME	chr8	TogoVar

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