Joint Open Genome and Omics Platform (JoGo)

Search by Variant

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Chr

Chromosome name (e.g., chr11).

Snpeff genename

Exact SnpEff gene name.

Sampleids

Target sampleid (e.g. HG02615).

Snpeff haplotype class

Haplotype-annotation class (e.g., ahapid, ahapid+chapid).

Snpeff annotation impact

Exact impact level (e.g., HIGH, MODERATE, LOW).

Snpeff annotation impact detail

Keyword match in SnpEff annotation.

Hapid

One or more haplotype IDs (comma-separated; e.g., a0001, a01, a0001c0001, a01c02, a1c2, a0001c0001t0005, a0001c0001t0005g0018).

Samplehapid

Sample haplotype IDs to include (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

No_hapid

Haplotype IDs to exclude (comma-separated; e.g., a0001, a0002, a0001c0001, a0001c0001t0005, a1, a01).

No_samplehapid

Sample haplotype IDs to exclude (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

Start

Start position (GRCh38).

End

End position (GRCh38).

Minac

Minimum alternate allele count (≥).

Maxac

Maximum alternate allele count (≤).

Minlen

Minimum variant length (≥).

Maxlen

Maximum variant length (≤).

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regionname	pos	ref	alt	annotation	impact	samples	ahapids	achapids	acthapids	actghapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	external
FER_chr5_108742897_109201841	108845043	T T	TATATATA others(27): Show TATATATATATATATATATATATATATATATATAC	intron_variant intron_variant	MODIFIER	HG02735.hp2 HG02735.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0024 a0001c0001t0024	a0001c0001t0024g0043 a0001c0001t0024g0043	1	138	0.0073	34	c.481 others(51): Show c.481+9261_481+9262insTATATATACATATATATATATATATATA TATATA	FER	ENSG00000151422.14	transcript	ENST00000281092.9	protein_coding	5/19		INFO_REALIGN_3_PRIME	chr5	TogoVar
FER_chr5_108742897_109201841	108879695	A A	AATATATA others(27): Show AATATATATATATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG02970.hp2 HG02970.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0107 a0001c0002t0001g0107	1	138	0.0073	34	c.924 others(51): Show c.924-3700_924-3699insTATATATATATATATATATATATATATA TATATA	FER	ENSG00000151422.14	transcript	ENST00000281092.9	protein_coding	8/19		INFO_REALIGN_3_PRIME	chr5	TogoVar
FER_chr5_108742897_109201841	108879697	A A	AATATATA others(27): Show AATATATATATATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG03139.hp2 HG03139.hp2	a0001 a0001	a0001c0008 a0001c0008	a0001c0008t0012 a0001c0008t0012	a0001c0008t0012g0094 a0001c0008t0012g0094	1	138	0.0073	34	c.924 others(51): Show c.924-3698_924-3697insTATATATATATATATATATATATATATA TATATA	FER	ENSG00000151422.14	transcript	ENST00000281092.9	protein_coding	8/19		INFO_REALIGN_3_PRIME	chr5	TogoVar
FER_chr5_108742897_109201841	108879701	A A	AAAATATA others(27): Show AAAATATATATATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG02615.hp2 HG02615.hp2	a0001 a0001	a0001c0010 a0001c0010	a0001c0010t0007 a0001c0010t0007	a0001c0010t0007g0134 a0001c0010t0007g0134	1	138	0.0073	34	c.924 others(51): Show c.924-3694_924-3693insAATATATATATATATATATATATATATA TATATA	FER	ENSG00000151422.14	transcript	ENST00000281092.9	protein_coding	8/19		INFO_REALIGN_3_PRIME	chr5	TogoVar
FER_chr5_108742897_109201841	108927252	C C	CTTTTTTT others(27): Show CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG02970.hp2 HG02970.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0107 a0001c0002t0001g0107	1	138	0.0073	34	c.123 others(55): Show c.1237-18859_1237-18858insTTTTTTTTTTTTTTTTTTTTTTTT TTTTTTTTTT	FER	ENSG00000151422.14	transcript	ENST00000281092.9	protein_coding	10/19		INFO_REALIGN_3_PRIME	chr5	TogoVar
FER_chr5_108742897_109201841	109146265	T T	TATTATCT others(27): Show TATTATCTATCTAATATATATATATTATCTATCTA	intron_variant intron_variant	MODIFIER	HG00735.hp2 HG00735.hp2	a0001 a0001	a0001c0005 a0001c0005	a0001c0005t0002 a0001c0005t0002	a0001c0005t0002g0099 a0001c0005t0002g0099	1	138	0.0073	34	c.204 others(55): Show c.2049-34480_2049-34479insTATCTATCTAATATATATATATTA TCTATCTAAT	FER	ENSG00000151422.14	transcript	ENST00000281092.9	protein_coding	17/19		INFO_REALIGN_3_PRIME	chr5	TogoVar
FGD4_chr12_32394558_32651050	32422288	C C	CTTTTTTT others(27): Show CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG04204.hp2 HG04204.hp2	a0002 a0002	a0002c0007 a0002c0007	a0002c0007t0007 a0002c0007t0007	a0002c0007t0007g0172 a0002c0007t0007g0172	1	232	0.0043	34	c.166 others(53): Show c.166+22357_166+22358insTTTTTTTTTTTTTTTTTTTTTTTTTT TTTTTTTT	FGD4	ENSG00000139132.16	transcript	ENST00000534526.7	protein_coding	1/16		INFO_REALIGN_3_PRIME	chr12	TogoVar
FGD4_chr12_32394558_32651050	32599494	C C	CAAAAAAA others(27): Show CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG01081.hp1 HG01081.hp2 HG01081.hp1 HG01081.hp2	a0002 a0002	a0002c0005 a0002c0006 a0002c0005 a0002c0006	a0002c0005t0005 a0002c0006t0002 a0002c0005t0005 a0002c0006t0002	a0002c0005t0005g0081 a0002c0006t0002g0158 a0002c0005t0005g0081 a0002c0006t0002g0158	2	232	0.0086	34	c.110 others(51): Show c.1101+922_1101+923insAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAA	FGD4	ENSG00000139132.16	transcript	ENST00000534526.7	protein_coding	5/16		INFO_REALIGN_3_PRIME	chr12	TogoVar
FGD4_chr12_32394558_32651050	32599534	C C	CTTTTTTT others(27): Show CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG02615.hp1 HG02615.hp1	a0001 a0001	a0001c0004 a0001c0004	a0001c0004t0014 a0001c0004t0014	a0001c0004t0014g0056 a0001c0004t0014g0056	1	232	0.0043	34	c.110 others(51): Show c.1101+978_1101+979insTTTTTTTTTTTTTTTTTTTTTTTTTTTT TTTTTT	FGD4	ENSG00000139132.16	transcript	ENST00000534526.7	protein_coding	5/16		INFO_REALIGN_3_PRIME	chr12	TogoVar
FGD5_chr3_14813962_14939571	14932047	A A	AATATGTT others(27): Show AATATGTTGAGACATATTGTCTCAACATACGTCAC	intron_variant intron_variant	MODIFIER	HG04115.hp2 HG04115.hp2	a0004 a0004	a0004c0006 a0004c0006	a0004c0006t0001 a0004c0006t0001	a0004c0006t0001g0086 a0004c0006t0001g0086	1	342	0.0029	34	c.419 others(51): Show c.4198-516_4198-483dupTATTGTCTCAACATACGTCACATATGTT GAGACA	FGD5	ENSG00000154783.12	transcript	ENST00000285046.10	protein_coding	18/19		INFO_REALIGN_3_PRIME	chr3	TogoVar
FGD6_chr12_95071749_95222467	95083012	A A	AAAAAAAA others(27): Show AAAAAAAATATATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	NA18942.hp1 NA18950.hp1 NA18979.hp1 others(1): Show NA18942.hp1 NA18950.hp1 NA18979.hp1 NA18983.hp2	a0001 a0002 a0001 a0002	a0001c0022 a0002c0002 a0001c0022 a0002c0002	a0001c0022t0016 a0002c0002t0003 a0001c0022t0016 a0002c0002t0003	a0001c0022t0016g0058 a0002c0002t0003g0227 a0002c0002t0003g0237 others(1): Show a0001c0022t0016g0058 a0002c0002t0003g0227 a0002c0002t0003g0237 a0002c0002t0003g0238	4	384	0.0104	34	c.425 others(53): Show c.4257-1457_4257-1456insATATATATATATATATATATATATAT ATTTTTTT	FGD6	ENSG00000180263.14	transcript	ENST00000343958.9	protein_coding	20/20			chr12	TogoVar
FGD6_chr12_95071749_95222467	95083012	A A	AAAATTTA others(27): Show AAAATTTATATATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG01257.hp1 HG01257.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0013 a0001c0001t0013	a0001c0001t0013g0010 a0001c0001t0013g0010	1	384	0.0026	34	c.425 others(53): Show c.4257-1457_4257-1456insATATATATATATATATATATATATAT ATAAATTT	FGD6	ENSG00000180263.14	transcript	ENST00000343958.9	protein_coding	20/20			chr12	TogoVar
FGD6_chr12_95071749_95222467	95083030	T T	TATATATA others(27): Show TATATATATATATATATATATATATATATACACAC	intron_variant intron_variant	MODIFIER	HG01074.hp1 HG01074.hp1	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0003 a0002c0002t0003	a0002c0002t0003g0243 a0002c0002t0003g0243	1	384	0.0026	34	c.425 others(53): Show c.4256+1467_4256+1468insGTGTGTATATATATATATATATATAT ATATATAT	FGD6	ENSG00000180263.14	transcript	ENST00000343958.9	protein_coding	20/20			chr12	TogoVar
FGD6_chr12_95071749_95222467	95083030	T T	TATATATA others(27): Show TATATATATATATATATATATATATATATATACAC	intron_variant intron_variant	MODIFIER	NA19004.hp1 NA19004.hp1	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0003 a0002c0002t0003	a0002c0002t0003g0240 a0002c0002t0003g0240	1	384	0.0026	34	c.425 others(53): Show c.4256+1467_4256+1468insGTGTATATATATATATATATATATAT ATATATAT	FGD6	ENSG00000180263.14	transcript	ENST00000343958.9	protein_coding	20/20			chr12	TogoVar
FGF12_chr3_192134390_192732541	192279230	G G	GTATATAT others(27): Show GTATATATATATATATATATATATATATATATATA	intron_variant intron_variant	MODIFIER	HG03098.hp2 HG03139.hp1 HG03098.hp2 HG03139.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0015 a0001c0001t0003 a0001c0001t0015	a0001c0001t0003g0074 a0001c0001t0015g0064 a0001c0001t0003g0074 a0001c0001t0015g0064	2	90	0.0222	34	c.228 others(53): Show c.228+56130_228+56131insTATATATATATATATATATATATATA TATATATA	FGF12	ENSG00000114279.15	transcript	ENST00000445105.7	protein_coding	4/5			chr3	TogoVar
FGF12_chr3_192134390_192732541	192485056	A A	ATATGTGT others(27): Show ATATGTGTACACATAAATTTTAAAATTTTAAATTT	intron_variant intron_variant	MODIFIER	HG02886.hp1 HG03516.hp2 NA18906.hp2 HG02886.hp1 HG03516.hp2 NA18906.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0005 a0001c0001t0018 a0001c0001t0001 a0001c0001t0005 a0001c0001t0018	a0001c0001t0001g0005 a0001c0001t0005g0029 a0001c0001t0018g0024 a0001c0001t0001g0005 a0001c0001t0005g0029 a0001c0001t0018g0024	3	90	0.0333	34	c.14- others(53): Show c.14-124552_14-124519dupAAATTTAAAATTTTAAAATTTATGTG TACACATA	FGF12	ENSG00000114279.15	transcript	ENST00000445105.7	protein_coding	2/5			chr3	TogoVar
FGF12_chr3_192134390_192732541	192512835	A A	AATAAATA others(27): Show AATAAATATATATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG02615.hp1 HG02615.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0010 a0001c0001t0010	a0001c0001t0010g0014 a0001c0001t0010g0014	1	90	0.0111	34	c.14- others(53): Show c.14-152298_14-152297insATATATATATATATATATATATATAT ATATTTAT	FGF12	ENSG00000114279.15	transcript	ENST00000445105.7	protein_coding	2/5			chr3	TogoVar
FGF12_chr3_192134390_192732541	192512859	T T	TATATATA others(27): Show TATATATATATATATATATATATATATATATATAA	intron_variant intron_variant	MODIFIER	HG03098.hp1 HG03492.hp2 HG03098.hp1 HG03492.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0036 a0001c0001t0002 a0001c0001t0036	a0001c0001t0002g0056 a0001c0001t0036g0006 a0001c0001t0002g0056 a0001c0001t0036g0006	2	90	0.0222	34	c.14- others(53): Show c.14-152322_14-152321insTTATATATATATATATATATATATAT ATATATAT	FGF12	ENSG00000114279.15	transcript	ENST00000445105.7	protein_coding	2/5			chr3	TogoVar
FGF14_chr13_101705804_101921945	101816269	C C	CAAAAAAA others(27): Show CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG03834.hp1 HG03834.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0076 a0001c0001t0076	a0001c0001t0076g0069 a0001c0001t0076g0069	1	266	0.0038	34	c.408 others(53): Show c.408+52455_408+52456insTTTTTTTTTTTTTTTTTTTTTTTTTT TTTTTTTT	FGF14	ENSG00000102466.17	transcript	ENST00000376143.5	protein_coding	3/4			chr13	TogoVar
FGF16_chrX_77442389_77462278	77449776	A A	ACTTAACA others(27): Show ACTTAACACCCTTAAGTTTAGGAGAAACTTAACAC	intron_variant intron_variant	MODIFIER	HG02622.hp2 HG02622.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0087 a0001c0001t0001g0087	1	309	0.0032	34	c.274 others(51): Show c.274+1829_274+1830insTTAACACCCTTAAGTTTAGGAGAAACTT AACACC	FGF16	ENSG00000196468.8	transcript	ENST00000439435.3	protein_coding	1/2		INFO_REALIGN_3_PRIME	chrX	TogoVar
FGF18_chr5_171414647_171462626	171461629	C C	CTTTCTTT others(27): Show CTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTT	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01952.hp1 HG02004.hp2 NA19072.hp1 HG01952.hp1 HG02004.hp2 NA19072.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0243 a0001c0001t0001g0246 a0001c0001t0001g0319 a0001c0001t0001g0243 a0001c0001t0001g0246 a0001c0001t0001g0319	3	388	0.0077	34	c.48 others(45): Show c.4824_*4825insTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTT	FGF18	ENSG00000156427.8	transcript	ENST00000274625.6	protein_coding		4004		chr5	TogoVar
FGF18_chr5_171414647_171462626	171461629	C C	CTTTCTTT others(27): Show CTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTTCT	downstream_gene_variant downstream_gene_variant	MODIFIER	NA18949.hp2 NA18949.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0298 a0001c0001t0001g0298	1	388	0.0026	34	c.48 others(45): Show c.4824_*4825insTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTTCT	FGF18	ENSG00000156427.8	transcript	ENST00000274625.6	protein_coding		4004		chr5	TogoVar
FGFR2_chr10_121473332_121603444	121577158	A A	AAAAAAAA others(27): Show AAAAAAAAAAAATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	NA20752.hp1 NA20752.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0125 a0001c0001t0003g0125	1	240	0.0042	34	c.110 others(53): Show c.110-11455_110-11454insATATATATATATATATATATATATTT TTTTTTTT	FGFR2	ENSG00000066468.24	transcript	ENST00000358487.10	protein_coding	2/17			chr10	TogoVar
FGFR2_chr10_121473332_121603444	121577178	T T	TATATATA others(27): Show TATATATATATATAGAGAGAGAGAGAGAGAGAGAG	intron_variant intron_variant	MODIFIER	HG02258.hp2 HG02258.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0004	a0001c0001t0004g0211 a0001c0001t0004g0211	1	240	0.0042	34	c.110 others(53): Show c.110-11475_110-11474insCTCTCTCTCTCTCTCTCTCTCTATAT ATATATAT	FGFR2	ENSG00000066468.24	transcript	ENST00000358487.10	protein_coding	2/17			chr10	TogoVar
FGGY_chr1_59292094_59767730	59491041	T T	TCCCTCCC others(27): Show TCCCTCCCCTCCCTCCTTCTTTCTCTCCCTCCCTC	intron_variant intron_variant	MODIFIER	HG03225.hp2 HG03225.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0124 a0001c0001t0002g0124	1	166	0.0060	34	c.671 others(53): Show c.671-21268_671-21267insCTCCCCTCCCTCCTTCTTTCTCTCCC TCCCTCCC	FGGY	ENSG00000172456.18	transcript	ENST00000303721.12	protein_coding	6/15		INFO_REALIGN_3_PRIME	chr1	TogoVar
FGL1_chr8_17859389_17900524	17882882	A A	AATATATC others(27): Show AATATATCTCATATATAATATATTAAATAATATAT	intron_variant intron_variant	MODIFIER	HG00099.hp1 HG00099.hp2 HG00140.hp2 others(121): Show HG00099.hp1 HG00099.hp2 HG00140.hp2 HG00408.hp2 HG00558.hp2 HG00609.hp1 HG00609.hp2 HG00639.hp2 HG00642.hp2 HG00673.hp1 HG00733.hp1 HG00733.hp2 HG00738.hp2 HG00741.hp1 HG01071.hp1 HG01071.hp2 HG01081.hp1 HG01099.hp1 HG01106.hp2 HG01109.hp1 HG01109.hp2 HG01167.hp2 HG01175.hp1 HG01175.hp2 HG01192.hp1 HG01192.hp2 HG01243.hp1 HG01243.hp2 HG01255.hp1 HG01256.hp1 HG01256.hp2 HG01257.hp2 HG01258.hp1 HG01258.hp2 HG01261.hp1 HG01361.hp1 HG01516.hp2 HG01517.hp1 HG01928.hp1 HG01978.hp1 HG01981.hp2 HG01993.hp2 HG02004.hp2 HG02027.hp1 HG02040.hp1 HG02056.hp2 HG02071.hp1 HG02071.hp2 HG02074.hp1 HG02080.hp2 HG02129.hp1 HG02145.hp2 HG02155.hp1 HG02155.hp2 HG02273.hp1 HG02300.hp1 HG02615.hp1 HG02622.hp1 HG02922.hp2 HG02965.hp1 HG02970.hp1 HG03098.hp2 HG03239.hp1 HG03486.hp1 HG03486.hp2 HG03490.hp1 HG03490.hp2 HG03492.hp2 HG03516.hp1 HG03831.hp2 HG03942.hp1 HG04184.hp1 HG04204.hp2 HG06807.hp1 NA18612.hp1 NA18747.hp1 NA18939.hp2 NA18942.hp1 NA18942.hp2 NA18943.hp2 NA18944.hp1 NA18945.hp1 NA18960.hp1 NA18960.hp2 NA18961.hp1 NA18962.hp1 NA18963.hp2 NA18966.hp1 NA18968.hp1 NA18968.hp2 NA18969.hp2 NA18970.hp2 NA18972.hp2 NA18974.hp1 NA18974.hp2 NA18975.hp2 NA18978.hp2 NA18982.hp1 NA18983.hp1 NA18984.hp1 NA18987.hp1 NA18987.hp2 NA18993.hp2 NA18997.hp1 NA19007.hp1 NA19043.hp1 NA19057.hp1 NA19058.hp1 NA19058.hp2 NA19060.hp2 NA19062.hp1 NA19062.hp2 NA19063.hp2 NA19067.hp1 NA19077.hp1 NA19077.hp2 NA19080.hp2 NA19081.hp2 NA19086.hp1 NA19088.hp1 NA19089.hp2 NA19090.hp1 NA20752.hp1 NA20805.hp1	a0001 a0004 a0007 others(3): Show a0001 a0004 a0007 a0009 a0013 a0016	a0001c0001 a0004c0004 a0007c0007 others(3): Show a0001c0001 a0004c0004 a0007c0007 a0009c0009 a0013c0016 a0016c0013	a0001c0001t0001 a0004c0004t0001 a0007c0007t0001 others(3): Show a0001c0001t0001 a0004c0004t0001 a0007c0007t0001 a0009c0009t0001 a0013c0016t0001 a0016c0013t0001	a0001c0001t0001g0001 a0001c0001t0001g0004 a0001c0001t0001g0008 others(86): Show a0001c0001t0001g0001 a0001c0001t0001g0004 a0001c0001t0001g0008 a0001c0001t0001g0009 a0001c0001t0001g0010 a0001c0001t0001g0011 a0001c0001t0001g0013 a0001c0001t0001g0017 a0001c0001t0001g0018 a0001c0001t0001g0019 a0001c0001t0001g0020 a0001c0001t0001g0022 a0001c0001t0001g0023 a0001c0001t0001g0024 a0001c0001t0001g0025 a0001c0001t0001g0026 a0001c0001t0001g0170 a0001c0001t0001g0171 a0001c0001t0001g0173 a0001c0001t0001g0175 a0001c0001t0001g0176 a0001c0001t0001g0177 a0001c0001t0001g0178 a0001c0001t0001g0179 a0001c0001t0001g0180 a0001c0001t0001g0181 a0001c0001t0001g0182 a0001c0001t0001g0183 a0001c0001t0001g0184 a0001c0001t0001g0186 a0001c0001t0001g0187 a0001c0001t0001g0188 a0001c0001t0001g0189 a0001c0001t0001g0190 a0001c0001t0001g0191 a0001c0001t0001g0192 a0001c0001t0001g0193 a0001c0001t0001g0194 a0001c0001t0001g0195 a0001c0001t0001g0196 a0001c0001t0001g0199 a0001c0001t0001g0200 a0001c0001t0001g0201 a0001c0001t0001g0202 a0001c0001t0001g0204 a0001c0001t0001g0205 a0001c0001t0001g0206 a0001c0001t0001g0207 a0001c0001t0001g0208 a0001c0001t0001g0209 a0001c0001t0001g0211 a0001c0001t0001g0213 a0001c0001t0001g0214 a0001c0001t0001g0215 a0001c0001t0001g0216 a0001c0001t0001g0217 a0001c0001t0001g0218 a0001c0001t0001g0219 a0001c0001t0001g0220 a0001c0001t0001g0222 a0001c0001t0001g0224 a0001c0001t0001g0225 a0001c0001t0001g0226 a0001c0001t0001g0227 a0001c0001t0001g0228 a0001c0001t0001g0229 a0001c0001t0001g0230 a0001c0001t0001g0231 a0001c0001t0001g0232 a0001c0001t0001g0233 a0001c0001t0001g0235 a0001c0001t0001g0237 a0001c0001t0001g0238 a0001c0001t0001g0239 a0001c0001t0001g0240 a0001c0001t0001g0241 a0001c0001t0001g0242 a0001c0001t0001g0243 a0001c0001t0001g0244 a0001c0001t0001g0245 a0001c0001t0001g0246 a0001c0001t0001g0247 a0001c0001t0001g0248 a0001c0001t0001g0249 a0004c0004t0001g0210 a0007c0007t0001g0005 a0009c0009t0001g0021 a0013c0016t0001g0203 a0016c0013t0001g0172	124	366	0.3388	34	c.64- others(47): Show c.64-737_64-704dupATATATTATTTAATATATTATATATGAGATAT AT	FGL1	ENSG00000104760.17	transcript	ENST00000427924.5	protein_coding	2/7			chr8	TogoVar
FGL1_chr8_17859389_17900524	17882917	A A	AATATATC others(27): Show AATATATCTCATATATAATATATTAAATAATATAT	intron_variant intron_variant	MODIFIER	HG02976.hp1 HG02976.hp1	a0003 a0003	a0003c0003 a0003c0003	a0003c0003t0001 a0003c0003t0001	a0003c0003t0001g0306 a0003c0003t0001g0306	1	366	0.0027	34	c.64- others(47): Show c.64-772_64-739dupATATATTATTTAATATATTATATATGAGATAT AT	FGL1	ENSG00000104760.17	transcript	ENST00000427924.5	protein_coding	2/7			chr8	TogoVar
FHAD1_chr1_15242223_15403328	15389447	C C	CAAAAAAA others(27): Show CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG01952.hp2 HG01952.hp2	a0002 a0002	a0002c0003 a0002c0003	a0002c0003t0003 a0002c0003t0003	a0002c0003t0003g0133 a0002c0003t0003g0133	1	294	0.0034	34	c.426 others(53): Show c.4269+1337_4269+1338insAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAA	FHAD1	ENSG00000142621.21	transcript	ENST00000688493.1	protein_coding	32/33		INFO_REALIGN_3_PRIME	chr1	TogoVar
FHIP1A_chr4_151404176_151675503	151445849	A A	AATATATA others(27): Show AATATATATATATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG01517.hp2 HG02647.hp2 HG02895.hp1 others(4): Show HG01517.hp2 HG02647.hp2 HG02895.hp1 HG03486.hp2 NA18979.hp2 NA19055.hp1 NA19072.hp1	a0001 a0007 a0001 a0007	a0001c0001 a0001c0002 a0007c0014 a0001c0001 a0001c0002 a0007c0014	a0001c0001t0007 a0001c0001t0021 a0001c0002t0002 others(3): Show a0001c0001t0007 a0001c0001t0021 a0001c0002t0002 a0001c0002t0007 a0001c0002t0045 a0007c0014t0020	a0001c0001t0007g0002 a0001c0001t0021g0119 a0001c0002t0002g0019 others(4): Show a0001c0001t0007g0002 a0001c0001t0021g0119 a0001c0002t0002g0019 a0001c0002t0002g0071 a0001c0002t0007g0083 a0001c0002t0045g0066 a0007c0014t0020g0096	7	252	0.0278	34	c.-35 others(53): Show c.-355-8828_-355-8827insATATATATATATATATATATATATAT ATATATAT	FHIP1A	ENSG00000164142.16	transcript	ENST00000435205.6	protein_coding	1/13		INFO_REALIGN_3_PRIME	chr4	TogoVar
FHIT_chr3_59742277_61256452	60195553	A A	ATATATAT others(27): Show ATATATATATATATATATATATATATATATATATT	intron_variant intron_variant	MODIFIER	NA20905.hp1 NA20905.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0031 a0001c0002t0001g0031	1	46	0.0217	34	c.104 others(55): Show c.104-181402_104-181401insAATATATATATATATATATATATA TATATATATA	FHIT	ENSG00000189283.11	transcript	ENST00000492590.6	protein_coding	5/9			chr3	TogoVar
FHIT_chr3_59742277_61256452	60441788	A A	ATATATAT others(27): Show ATATATATACACACACATATATGTATATGTGTGTG	intron_variant intron_variant	MODIFIER	HG02280.hp1 HG02280.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0005 a0001c0001t0003g0005	1	46	0.0217	34	c.103 others(53): Show c.103+95071_103+95072insCACACACATATACATATATGTGTGTG TATATATA	FHIT	ENSG00000189283.11	transcript	ENST00000492590.6	protein_coding	5/9			chr3	TogoVar
FHIT_chr3_59742277_61256452	60660727	C C	CTTTTTTT others(27): Show CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG02630.hp1 HG02630.hp1	a0002 a0002	a0002c0004 a0002c0004	a0002c0004t0005 a0002c0004t0005	a0002c0004t0005g0014 a0002c0004t0005g0014	1	46	0.0217	34	c.-17 others(55): Show c.-17-123749_-17-123748insAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAA	FHIT	ENSG00000189283.11	transcript	ENST00000492590.6	protein_coding	4/9			chr3	TogoVar
FHIT_chr3_59742277_61256452	60660729	C C	CTTTTTTT others(27): Show CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG02300.hp2 HG02300.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0034 a0001c0001t0001g0034	1	46	0.0217	34	c.-17 others(55): Show c.-17-123751_-17-123750insAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAA	FHIT	ENSG00000189283.11	transcript	ENST00000492590.6	protein_coding	4/9			chr3	TogoVar
FHIT_chr3_59742277_61256452	60663153	G G	GTGATATA others(27): Show GTGATATATATATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG02258.hp1 HG06807.hp1 NA18906.hp1 HG02258.hp1 HG06807.hp1 NA18906.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0007 a0001c0001t0013 a0001c0001t0003 a0001c0001t0007 a0001c0001t0013	a0001c0001t0003g0016 a0001c0001t0007g0007 a0001c0001t0013g0003 a0001c0001t0003g0016 a0001c0001t0007g0007 a0001c0001t0013g0003	3	46	0.0652	34	c.-17 others(55): Show c.-17-126175_-17-126174insATATATATATATATATATATATAT ATATATATCA	FHIT	ENSG00000189283.11	transcript	ENST00000492590.6	protein_coding	4/9			chr3	TogoVar
FHIT_chr3_59742277_61256452	61239762	C C	CATATATA others(27): Show CATATATATATATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG06807.hp2 HG06807.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0012 a0001c0001t0012	a0001c0001t0012g0022 a0001c0001t0012g0022	1	46	0.0217	34	c.-21 others(55): Show c.-213+11538_-213+11539insATATATATATATATATATATATAT ATATATATAT	FHIT	ENSG00000189283.11	transcript	ENST00000492590.6	protein_coding	1/9			chr3	TogoVar
FHL2_chr2_105355826_105404051	105402074	T T	TGTATATA others(27): Show TGTATATATGTGTATATATACGTGTATATATACAC	upstream_gene_variant upstream_gene_variant	MODIFIER	NA18944.hp1 NA18970.hp1 NA19082.hp2 others(1): Show NA18944.hp1 NA18970.hp1 NA19082.hp2 NA19084.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0005 a0001c0001t0001g0018 a0001c0001t0001g0277 others(1): Show a0001c0001t0001g0005 a0001c0001t0001g0018 a0001c0001t0001g0277 a0001c0001t0001g0326	4	448	0.0089	34	c.-33 others(45): Show c.-3342_-3309dupGTGTATATATACACGTATATATACACATATATAC	FHL2	ENSG00000115641.19	transcript	ENST00000530340.6	protein_coding		3024		chr2	TogoVar
FILIP1L_chr3_99823811_100119501	100117854	C C	CATATATA others(27): Show CATATATATATATATATATATATATATATACATAT	upstream_gene_variant upstream_gene_variant	MODIFIER	NA19056.hp2 NA19056.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0106 a0001c0001t0001g0106	1	258	0.0039	34	c.-38 others(45): Show c.-3813_-3812insATATGTATATATATATATATATATATATATATAT	FILIP1L	ENSG00000168386.19	transcript	ENST00000477258.2	protein_coding		3354		chr3	TogoVar
FKBP2_chr11_64236095_64249132	64237085	A A	AAGAGAGA others(27): Show AAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02809.hp2 HG06807.hp1 NA20300.hp1 HG02809.hp2 HG06807.hp1 NA20300.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0001 a0001c0001t0001g0006 a0001c0001t0001g0001 a0001c0001t0001g0006	3	332	0.0090	34	c.-40 others(45): Show c.-4052_-4051insAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG	FKBP2	ENSG00000173486.14	transcript	ENST00000309366.9	protein_coding		4009		chr11	TogoVar
FKBP9_chr7_32952440_33011928	32965828	T T	TGTGTACA others(27): Show TGTGTACACATATATATATATATATATATGTGTAC	intron_variant intron_variant	MODIFIER	HG03540.hp2 HG03540.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0005 a0001c0001t0005	a0001c0001t0005g0330 a0001c0001t0005g0330	1	430	0.0023	34	c.221 others(51): Show c.221+8034_221+8035insGTGTACACATATATATATATATATATAT GTGTAC	FKBP9	ENSG00000122642.11	transcript	ENST00000242209.9	protein_coding	1/9			chr7	TogoVar
FLNA_chrX_154343531_154379634	154361076	A A	AAAAAAAA others(27): Show AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAG	intron_variant intron_variant	MODIFIER	HG00140.hp1 HG00140.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0002 a0001c0002t0002	a0001c0002t0002g0150 a0001c0002t0002g0150	1	279	0.0036	34	c.320 others(51): Show c.3207+231_3207+232insCTTTTTTTTTTTTTTTTTTTTTTTTTTT TTTTTT	FLNA	ENSG00000196924.19	transcript	ENST00000369850.10	protein_coding	21/47			chrX	TogoVar
FLRT2_chr14_85525144_85659428	85631110	T T	TTATATAT others(27): Show TTATATATATATATATATATATATATATATATATA	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG03471.hp1 HG03471.hp1	a0001 a0001	a0001c0011 a0001c0011	a0001c0011t0183 a0001c0011t0183	a0001c0011t0183g0238 a0001c0011t0183g0238	1	338	0.0030	34	c.76 others(45): Show c.7614_*7615insATATATATATATATATATATATATATATATATAT	FLRT2	ENSG00000185070.12	transcript	ENST00000330753.6	protein_coding	2/2	7615	INFO_REALIGN_3_PRIME	chr14	TogoVar
FLRT2_chr14_85525144_85659428	85631112	T T	TTATATAT others(27): Show TTATATATATATATACTATATAGTATATATATATA	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	NA18940.hp1 NA18940.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0026 a0001c0001t0026	a0001c0001t0026g0017 a0001c0001t0026g0017	1	338	0.0030	34	c.76 others(45): Show c.7629_*7630insCTATATAGTATATATATATATATATATATATATA	FLRT2	ENSG00000185070.12	transcript	ENST00000330753.6	protein_coding	2/2	7630	INFO_REALIGN_3_PRIME	chr14	TogoVar
FLRT2_chr14_85525144_85659428	85631112	T T	TTATATAT others(27): Show TTATATATATATATATATATATATATATATATATA	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG00280.hp2 HG00408.hp2 HG00558.hp1 others(21): Show HG00280.hp2 HG00408.hp2 HG00558.hp1 HG01975.hp2 HG02083.hp2 HG02135.hp2 HG02258.hp1 HG02486.hp1 HG02523.hp1 HG02622.hp1 HG02818.hp2 HG03492.hp2 HG03579.hp2 HG06807.hp2 NA18747.hp2 NA18906.hp2 NA18949.hp2 NA18961.hp1 NA18985.hp2 NA18988.hp2 NA18998.hp1 NA19010.hp2 NA19074.hp2 NA20300.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0001c0004 a0002c0002 a0001c0001 a0001c0004 a0002c0002	a0001c0001t0005 a0001c0001t0007 a0001c0001t0027 others(20): Show a0001c0001t0005 a0001c0001t0007 a0001c0001t0027 a0001c0001t0055 a0001c0001t0056 a0001c0001t0057 a0001c0001t0058 a0001c0001t0059 a0001c0001t0060 a0001c0001t0097 a0001c0001t0107 a0001c0001t0182 a0001c0001t0244 a0001c0001t0278 a0001c0001t0279 a0001c0001t0311 a0001c0004t0032 a0002c0002t0007 a0002c0002t0114 a0002c0002t0137 a0002c0002t0141 a0002c0002t0142 a0002c0002t0143	a0001c0001t0005g0065 a0001c0001t0005g0208 a0001c0001t0007g0037 others(21): Show a0001c0001t0005g0065 a0001c0001t0005g0208 a0001c0001t0007g0037 a0001c0001t0027g0327 a0001c0001t0055g0318 a0001c0001t0056g0032 a0001c0001t0057g0110 a0001c0001t0058g0288 a0001c0001t0059g0295 a0001c0001t0060g0287 a0001c0001t0097g0069 a0001c0001t0107g0133 a0001c0001t0182g0063 a0001c0001t0244g0159 a0001c0001t0278g0148 a0001c0001t0279g0192 a0001c0001t0311g0335 a0001c0004t0032g0091 a0002c0002t0007g0123 a0002c0002t0114g0291 a0002c0002t0137g0171 a0002c0002t0141g0268 a0002c0002t0142g0120 a0002c0002t0143g0115	24	338	0.0710	34	c.76 others(45): Show c.7632_*7633insATATATATATATATATATATATATATATATATAT	FLRT2	ENSG00000185070.12	transcript	ENST00000330753.6	protein_coding	2/2	7633	INFO_REALIGN_3_PRIME	chr14	TogoVar
FLRT2_chr14_85525144_85659428	85645172	G G	GTATATGT others(27): Show GTATATGTATACCTATATATATGTATACATATGTA	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG02809.hp1 HG02818.hp1 HG02976.hp2 others(1): Show HG02809.hp1 HG02818.hp1 HG02976.hp2 HG03453.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0165 a0001c0001t0292 a0001c0001t0294 others(1): Show a0001c0001t0165 a0001c0001t0292 a0001c0001t0294 a0001c0001t0295	a0001c0001t0165g0143 a0001c0001t0292g0060 a0001c0001t0294g0174 others(1): Show a0001c0001t0165g0143 a0001c0001t0292g0060 a0001c0001t0294g0174 a0001c0001t0295g0176	4	338	0.0118	34	c.21 others(47): Show c.21684_*21717dupTACCTATATATATGTATACATATGTATATATG TA	FLRT2	ENSG00000185070.12	transcript	ENST00000330753.6	protein_coding	2/2	21718	INFO_REALIGN_3_PRIME	chr14	TogoVar
FLRT3_chr20_14317985_14342612	14322175	A A	AATATATA others(27): Show AATATATATATATATATATATATATATATATATAT	downstream_gene_variant downstream_gene_variant	MODIFIER	HG03579.hp1 HG04228.hp2 NA18939.hp1 others(2): Show HG03579.hp1 HG04228.hp2 NA18939.hp1 NA18988.hp1 NA19001.hp2	a0001 a0002 a0003 a0001 a0002 a0003	a0001c0002 a0002c0003 a0003c0004 a0001c0002 a0002c0003 a0003c0004	a0001c0002t0002 a0002c0003t0004 a0002c0003t0005 others(1): Show a0001c0002t0002 a0002c0003t0004 a0002c0003t0005 a0003c0004t0007	a0001c0002t0002g0005 a0002c0003t0004g0003 a0002c0003t0004g0015 others(2): Show a0001c0002t0002g0005 a0002c0003t0004g0003 a0002c0003t0004g0015 a0002c0003t0005g0004 a0003c0004t0007g0041	5	430	0.0116	34	c.33 others(45): Show c.3381_*3382insATATATATATATATATATATATATATATATATAT	FLRT3	ENSG00000125848.10	transcript	ENST00000341420.5	protein_coding		809		chr20	TogoVar
FLT1_chr13_28295346_28500128	28372566	G G	GTATATAT others(27): Show GTATATATATATATATATATATATATATATATATA	intron_variant intron_variant	MODIFIER	HG04115.hp1 HG04115.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0202 a0001c0001t0001g0202	1	228	0.0044	34	c.211 others(55): Show c.2116+12285_2116+12318dupTATATATATATATATATATATATA TATATATATA	FLT1	ENSG00000102755.13	transcript	ENST00000282397.9	protein_coding	14/29			chr13	TogoVar
FLT1_chr13_28295346_28500128	28412329	C C	CTTTCTTT others(27): Show CTTTCTTTCTTTCTTTCTTTCTTTTCTTTCTTTCT	intron_variant intron_variant	MODIFIER	HG00323.hp2 HG00738.hp1 HG02647.hp1 others(3): Show HG00323.hp2 HG00738.hp1 HG02647.hp1 HG02922.hp2 HG03834.hp1 NA18977.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0001 a0001c0001t0003 a0001c0002t0001 a0001c0001t0001 a0001c0001t0003 a0001c0002t0001	a0001c0001t0001g0045 a0001c0001t0001g0155 a0001c0001t0001g0156 others(3): Show a0001c0001t0001g0045 a0001c0001t0001g0155 a0001c0001t0001g0156 a0001c0001t0003g0144 a0001c0002t0001g0124 a0001c0002t0001g0175	6	228	0.0263	34	c.143 others(53): Show c.1437-6436_1437-6435insAGAAAGAAAGAAAAGAAAGAAAGAAA GAAAGAAA	FLT1	ENSG00000102755.13	transcript	ENST00000282397.9	protein_coding	10/29			chr13	TogoVar
FLT1_chr13_28295346_28500128	28412330	T T	TTTCTTTC others(27): Show TTTCTTTCTTTCTTTCTTTTCTTTCTTTCTTTTTC	intron_variant intron_variant	MODIFIER	HG02486.hp1 HG02486.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0154 a0001c0001t0001g0154	1	228	0.0044	34	c.143 others(53): Show c.1437-6437_1437-6436insGAAAAAGAAAGAAAGAAAAGAAAGAA AGAAAGAA	FLT1	ENSG00000102755.13	transcript	ENST00000282397.9	protein_coding	10/29			chr13	TogoVar
FLT1_chr13_28295346_28500128	28453023	T T	TCCCCCTC others(27): Show TCCCCCTCCCTCTCCCCCCCTCCCCCCTCCCCCTC	intron_variant intron_variant	MODIFIER	HG02809.hp2 HG02809.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0050 a0001c0002t0001g0050	1	228	0.0044	34	c.388 others(53): Show c.388+13879_388+13880insGAGGGGGAGGGGGGAGGGGGGGAGAG GGAGGGGG	FLT1	ENSG00000102755.13	transcript	ENST00000282397.9	protein_coding	3/29			chr13	TogoVar
FLT4_chr5_180596506_180654600	180614200	T T	TTGTCCCG others(27): Show TTGTCCCGCGGTGGATGGGGAGACGGAGGGAAGCA	intron_variant intron_variant	MODIFIER	HG03098.hp2 HG03098.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0010 a0001c0001t0010	a0001c0001t0010g0368 a0001c0001t0010g0368	1	388	0.0026	34	c.322 others(49): Show c.3220-22_3220-21insTGCTTCCCTCCGTCTCCCCATCCACCGCGG GACA	FLT4	ENSG00000037280.16	transcript	ENST00000261937.11	protein_coding	23/29			chr5	TogoVar

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