Joint Open Genome and Omics Platform (JoGo)

Search by Variant

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Chr

Chromosome name (e.g., chr11).

Snpeff genename

Exact SnpEff gene name.

Sampleids

Target sampleid (e.g. HG02615).

Snpeff haplotype class

Haplotype-annotation class (e.g., ahapid, ahapid+chapid).

Snpeff annotation impact

Exact impact level (e.g., HIGH, MODERATE, LOW).

Snpeff annotation impact detail

Keyword match in SnpEff annotation.

Hapid

One or more haplotype IDs (comma-separated; e.g., a0001, a01, a0001c0001, a01c02, a1c2, a0001c0001t0005, a0001c0001t0005g0018).

Samplehapid

Sample haplotype IDs to include (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

No_hapid

Haplotype IDs to exclude (comma-separated; e.g., a0001, a0002, a0001c0001, a0001c0001t0005, a1, a01).

No_samplehapid

Sample haplotype IDs to exclude (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

Start

Start position (GRCh38).

End

End position (GRCh38).

Minac

Minimum alternate allele count (≥).

Maxac

Maximum alternate allele count (≤).

Minlen

Minimum variant length (≥).

Maxlen

Maximum variant length (≤).

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regionname	pos	ref	alt	annotation	impact	samples	ahapids	achapids	acthapids	actghapids	ac	an	af	len	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	distance	status	chr	external
LRP1B_chr2_140226423_142136016	141103522	T T	TTCTCTCT others(27): Show TTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC	intron_variant intron_variant	MODIFIER	HG01884.hp2 HG01884.hp2	a0001 a0001	a0001c0016 a0001c0016	a0001c0016t0001 a0001c0016t0001	a0001c0016t0001g0011 a0001c0016t0001g0011	1	28	0.0357	34	c.101 others(55): Show c.1014-41250_1014-41249insGAGAGAGAGAGAGAGAGAGAGAGA GAGAGAGAGA		LRP1B	ENSG00000168702.18	transcript	ENST00000389484.8	protein_coding	7/90						chr2	TogoVar
LRP1B_chr2_140226423_142136016	141517259	T T	TACACACA others(27): Show TACACACACACACACACACACACACACATACACAC	intron_variant intron_variant	MODIFIER	HG02922.hp2 HG02922.hp2	a0001 a0001	a0001c0008 a0001c0008	a0001c0008t0001 a0001c0008t0001	a0001c0008t0001g0008 a0001c0008t0001g0008	1	28	0.0357	34	c.206 others(53): Show c.206-36727_206-36726insGTGTGTATGTGTGTGTGTGTGTGTGT GTGTGTGT		LRP1B	ENSG00000168702.18	transcript	ENST00000389484.8	protein_coding	2/90						chr2	TogoVar
LRP1B_chr2_140226423_142136016	141579724	C C	CTTTTTTT others(27): Show CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG02559.hp2 HG02559.hp2	a0001 a0001	a0001c0014 a0001c0014	a0001c0014t0004 a0001c0014t0004	a0001c0014t0004g0002 a0001c0014t0004g0002	1	28	0.0357	34	c.206 others(53): Show c.206-99192_206-99191insAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAA		LRP1B	ENSG00000168702.18	transcript	ENST00000389484.8	protein_coding	2/90						chr2	TogoVar
LRP1B_chr2_140226423_142136016	141753263	C C	CATATATA others(27): Show CATATATATATATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG01884.hp1 HG01884.hp1	a0002 a0002	a0002c0004 a0002c0004	a0002c0004t0004 a0002c0004t0004	a0002c0004t0004g0006 a0002c0004t0004g0006	1	28	0.0357	34	c.205 others(53): Show c.205+57015_205+57016insATATATATATATATATATATATATAT ATATATAT		LRP1B	ENSG00000168702.18	transcript	ENST00000389484.8	protein_coding	2/90						chr2	TogoVar
LRP1B_chr2_140226423_142136016	142115847	T T	TATATTAT others(27): Show TATATTATATACGTAATATATATCATATATATGTA	intron_variant intron_variant	MODIFIER	HG03225.hp2 HG03225.hp2	a0001 a0001	a0001c0018 a0001c0018	a0001c0018t0002 a0001c0018t0002	a0001c0018t0002g0013 a0001c0018t0002g0013	1	28	0.0357	34	c.82+ others(51): Show c.82+14800_82+14801insTACATATATATGATATATATTACGTATA TAATAT		LRP1B	ENSG00000168702.18	transcript	ENST00000389484.8	protein_coding	1/90						chr2	TogoVar
LRP2BP_chr4_185358872_185400924	185375514	A A	ATATATAT others(27): Show ATATATATATGTATATATATATATATATATATATG	intron_variant intron_variant	MODIFIER	HG01891.hp1 HG01891.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0006 a0001c0001t0006	a0001c0001t0006g0023 a0001c0001t0006g0023	1	348	0.0029	34	c.330 others(47): Show c.330+98_330+99insCATATATATATATATATATATATACATATATA TA		LRP2BP	ENSG00000109771.16	transcript	ENST00000505916.6	protein_coding	4/8						chr4	TogoVar
LRP2_chr2_169122109_169367534	169168018	A A	AATATATA others(27): Show AATATATATATATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG00558.hp1 NA18956.hp2 HG00558.hp1 NA18956.hp2	a0001 a0002 a0001 a0002	a0001c0050 a0002c0174 a0001c0050 a0002c0174	a0001c0050t0003 a0002c0174t0001 a0001c0050t0003 a0002c0174t0001	a0001c0050t0003g0113 a0002c0174t0001g0193 a0001c0050t0003g0113 a0002c0174t0001g0193	2	250	0.0080	34	c.116 others(53): Show c.11635+520_11635+521insATATATATATATATATATATATATAT ATATATAT		LRP2	ENSG00000081479.15	transcript	ENST00000649046.1	protein_coding	61/78						chr2	TogoVar
LRP2_chr2_169122109_169367534	169287848	T T	TATTAAAA others(27): Show TATTAAAATATTTAATATTAAAATTAAAATATTTA	intron_variant intron_variant	MODIFIER	NA19043.hp1 NA19043.hp1	a0039 a0039	a0039c0047 a0039c0047	a0039c0047t0009 a0039c0047t0009	a0039c0047t0009g0051 a0039c0047t0009g0051	1	250	0.0040	34	c.104 others(53): Show c.1042+1177_1042+1178insTAAATATTTTAATTTTAATATTAAAT ATTTTAAT		LRP2	ENSG00000081479.15	transcript	ENST00000649046.1	protein_coding	9/78						chr2	TogoVar
LRP5_chr11_68307591_68454275	68341059	C C	CCTTTTTT others(27): Show CCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG03540.hp2 HG03540.hp2	a0003 a0003	a0003c0012 a0003c0012	a0003c0012t0001 a0003c0012t0001	a0003c0012t0001g0004 a0003c0012t0001g0004	1	212	0.0047	34	c.92- others(49): Show c.92-6788_92-6787insCTTTTTTTTTTTTTTTTTTTTTTTTTTTTT TTTT		LRP5	ENSG00000162337.12	transcript	ENST00000294304.12	protein_coding	1/22						chr11	TogoVar
LRP8_chr1_53237364_53333070	53283749	C C	CCACTTAC others(27): Show CCACTTACTTACCTACTACATACCCGGGCCACTTA	intron_variant intron_variant	MODIFIER	HG02896.hp1 HG02896.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0210 a0001c0001t0001g0210	1	296	0.0034	34	c.368 others(51): Show c.368-3035_368-3034insTAAGTGGCCCGGGTATGTAGTAGGTAAG TAAGTG		LRP8	ENSG00000157193.18	transcript	ENST00000306052.12	protein_coding	3/18						chr1	TogoVar
LRPAP1_chr4_3498612_3537422	3522592	G G	GGACGCCG others(27): Show GGACGCCGCCCCACACCCCCTGCCTGGGGAGGACA	intron_variant intron_variant	MODIFIER	HG02486.hp2 HG03195.hp1 NA19043.hp2 HG02486.hp2 HG03195.hp1 NA19043.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0010 a0001c0001t0010	a0001c0001t0010g0018 a0001c0001t0010g0018	3	420	0.0071	34	c.349 others(51): Show c.349+2281_349+2314dupTGTCCTCCCCAGGCAGGGGGTGTGGGGC GGCGTC		LRPAP1	ENSG00000163956.13	transcript	ENST00000650182.1	protein_coding	2/7						chr4	TogoVar
LRPAP1_chr4_3498612_3537422	3537064	G G	GGCATAGA others(27): Show GGCATAGATCTTGGGACAGGAAAGAGCTGTGAAGC	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01993.hp2 HG01993.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0043 a0001c0001t0043	a0001c0001t0043g0303 a0001c0001t0043g0303	1	420	0.0024	34	c.-46 others(45): Show c.-4653_-4652insGCTTCACAGCTCTTTCCTGTCCCAAGATCTATGC		LRPAP1	ENSG00000163956.13	transcript	ENST00000650182.1	protein_coding					4643		chr4	TogoVar
LRRC18_chr10_48904480_48944840	48923506	A A	ATATATAT others(27): Show ATATATATATATATATATATATATATGTATGTATG	intron_variant intron_variant	MODIFIER	NA18998.hp1 NA18998.hp1	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0001 a0002c0002t0001	a0002c0002t0001g0213 a0002c0002t0001g0213	1	420	0.0024	34	c.-77 others(51): Show c.-77-9275_-77-9274insCATACATACATATATATATATATATATA TATATA		LRRC18	ENSG00000165383.12	transcript	ENST00000374160.8	protein_coding	2/3						chr10	TogoVar
LRRC2_chr3_46510385_46571302	46564296	A A	ACCACTTT others(27): Show ACCACTTTACAGAGCCATCCACTTTACAGAGCCAT	intron_variant intron_variant	MODIFIER	HG02055.hp2 HG02451.hp1 HG02486.hp2 others(4): Show HG02055.hp2 HG02451.hp1 HG02486.hp2 HG02615.hp2 HG02647.hp1 HG02818.hp1 NA20129.hp1	a0001 a0005 a0001 a0005	a0001c0001 a0005c0005 a0001c0001 a0005c0005	a0001c0001t0001 a0001c0001t0005 a0001c0001t0006 others(4): Show a0001c0001t0001 a0001c0001t0005 a0001c0001t0006 a0001c0001t0019 a0001c0001t0026 a0005c0005t0028 a0005c0005t0031	a0001c0001t0001g0042 a0001c0001t0005g0284 a0001c0001t0006g0039 others(4): Show a0001c0001t0001g0042 a0001c0001t0005g0284 a0001c0001t0006g0039 a0001c0001t0019g0047 a0001c0001t0026g0018 a0005c0005t0028g0041 a0005c0005t0031g0040	7	364	0.0192	34	c.-20 others(51): Show c.-20+1847_-20+1880dupATGGCTCTGTAAAGTGGATGGCTCTGTA AAGTGG		LRRC2	ENSG00000163827.14	transcript	ENST00000395905.8	protein_coding	1/8						chr3	TogoVar
LRRC31_chr3_169834172_169874935	169857415	C C	CATATATA others(27): Show CATATATACATATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG00438.hp1 HG00544.hp2 HG00621.hp1 others(21): Show HG00438.hp1 HG00544.hp2 HG00621.hp1 HG01070.hp1 HG01071.hp2 HG01175.hp1 HG01361.hp1 HG01943.hp1 HG01943.hp2 HG01978.hp2 HG02615.hp1 HG02809.hp2 HG03491.hp1 HG03831.hp1 HG04199.hp2 NA18943.hp1 NA18949.hp1 NA18971.hp2 NA18989.hp2 NA19065.hp1 NA19067.hp2 NA19088.hp2 NA20129.hp2 NA20300.hp1	a0001 a0004 a0010 a0001 a0004 a0010	a0001c0001 a0001c0002 a0004c0006 others(1): Show a0001c0001 a0001c0002 a0004c0006 a0010c0015	a0001c0001t0001 a0001c0002t0001 a0004c0006t0001 others(1): Show a0001c0001t0001 a0001c0002t0001 a0004c0006t0001 a0010c0015t0001	a0001c0001t0001g0047 a0001c0001t0001g0052 a0001c0001t0001g0053 others(21): Show a0001c0001t0001g0047 a0001c0001t0001g0052 a0001c0001t0001g0053 a0001c0001t0001g0054 a0001c0001t0001g0100 a0001c0001t0001g0102 a0001c0001t0001g0137 a0001c0001t0001g0199 a0001c0001t0001g0201 a0001c0001t0001g0205 a0001c0001t0001g0206 a0001c0001t0001g0207 a0001c0001t0001g0210 a0001c0001t0001g0221 a0001c0001t0001g0222 a0001c0001t0001g0223 a0001c0001t0001g0224 a0001c0001t0001g0225 a0001c0001t0001g0267 a0001c0001t0001g0284 a0001c0002t0001g0144 a0001c0002t0001g0194 a0004c0006t0001g0281 a0010c0015t0001g0275	24	322	0.0745	34	c.488 others(49): Show c.488-544_488-543insATATATATATATATATATATATATATGTAT ATAT		LRRC31	ENSG00000114248.10	transcript	ENST00000316428.10	protein_coding	3/8						chr3	TogoVar
LRRC3B_chr3_26617772_26715776	26671371	T T	TAGAGAGA others(27): Show TAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG	intron_variant intron_variant	MODIFIER	HG03540.hp2 HG03540.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0024 a0001c0001t0001g0024	1	370	0.0027	34	c.-16 others(55): Show c.-160-38141_-160-38140insGAGAGAGAGAGAGAGAGAGAGAGA GAGAGAGAGA		LRRC3B	ENSG00000179796.13	transcript	ENST00000396641.7	protein_coding	1/1					INFO_REALIGN_3_PRIME	chr3	TogoVar
LRRC3B_chr3_26617772_26715776	26671373	T T	TAGAGAGA others(27): Show TAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG	intron_variant intron_variant	MODIFIER	NA18994.hp2 NA19011.hp2 NA19056.hp1 NA18994.hp2 NA19011.hp2 NA19056.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0214 a0001c0001t0001g0215 a0001c0001t0001g0235 a0001c0001t0001g0214 a0001c0001t0001g0215 a0001c0001t0001g0235	3	370	0.0081	34	c.-16 others(55): Show c.-160-38132_-160-38099dupGAGAGAGAGAGAGAGAGAGAGAGA GAGAGAGAGA		LRRC3B	ENSG00000179796.13	transcript	ENST00000396641.7	protein_coding	1/1					INFO_REALIGN_3_PRIME	chr3	TogoVar
LRRC3B_chr3_26617772_26715776	26671373	T T	TATAGAGA others(27): Show TATAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG	intron_variant intron_variant	MODIFIER	HG03492.hp1 NA18953.hp1 HG03492.hp1 NA18953.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0192 a0001c0001t0001g0234 a0001c0001t0001g0192 a0001c0001t0001g0234	2	370	0.0054	34	c.-16 others(55): Show c.-160-38139_-160-38138insTAGAGAGAGAGAGAGAGAGAGAGA GAGAGAGAGA		LRRC3B	ENSG00000179796.13	transcript	ENST00000396641.7	protein_coding	1/1					INFO_REALIGN_3_PRIME	chr3	TogoVar
LRRC3B_chr3_26617772_26715776	26671373	T T	TATATATA others(27): Show TATATATAGAGAGAGAGAGAGAGAGAGAGAGAGAG	intron_variant intron_variant	MODIFIER	NA19012.hp2 NA19012.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0304 a0001c0001t0001g0304	1	370	0.0027	34	c.-16 others(55): Show c.-160-38139_-160-38138insTATATAGAGAGAGAGAGAGAGAGA GAGAGAGAGA		LRRC3B	ENSG00000179796.13	transcript	ENST00000396641.7	protein_coding	1/1					INFO_REALIGN_3_PRIME	chr3	TogoVar
LRRC3B_chr3_26617772_26715776	26671373	T T	TATATATA others(27): Show TATATATATAGAGAGAGAGAGAGAGAGAGAGAGAG	intron_variant intron_variant	MODIFIER	NA19003.hp1 NA20300.hp2 NA19003.hp1 NA20300.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0001 a0001c0002t0001 a0001c0001t0001 a0001c0002t0001	a0001c0001t0001g0142 a0001c0002t0001g0029 a0001c0001t0001g0142 a0001c0002t0001g0029	2	370	0.0054	34	c.-16 others(55): Show c.-160-38139_-160-38138insTATATATAGAGAGAGAGAGAGAGA GAGAGAGAGA		LRRC3B	ENSG00000179796.13	transcript	ENST00000396641.7	protein_coding	1/1					INFO_REALIGN_3_PRIME	chr3	TogoVar
LRRC3B_chr3_26617772_26715776	26671373	T T	TATATATA others(27): Show TATATATATATATATATAGAGAGAGAGAGAGAGAG	intron_variant intron_variant	MODIFIER	HG02809.hp1 HG03453.hp1 HG02809.hp1 HG03453.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0001 a0001c0002t0001 a0001c0001t0001 a0001c0002t0001	a0001c0001t0001g0291 a0001c0002t0001g0005 a0001c0001t0001g0291 a0001c0002t0001g0005	2	370	0.0054	34	c.-16 others(55): Show c.-160-38139_-160-38138insTATATATATATATATAGAGAGAGA GAGAGAGAGA		LRRC3B	ENSG00000179796.13	transcript	ENST00000396641.7	protein_coding	1/1					INFO_REALIGN_3_PRIME	chr3	TogoVar
LRRC3B_chr3_26617772_26715776	26671373	T T	TATATATA others(27): Show TATATATATATATATATATAGAGAGAGAGAGAGAG	intron_variant intron_variant	MODIFIER	HG03225.hp2 HG03225.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0006 a0001c0002t0001g0006	1	370	0.0027	34	c.-16 others(55): Show c.-160-38139_-160-38138insTATATATATATATATATAGAGAGA GAGAGAGAGA		LRRC3B	ENSG00000179796.13	transcript	ENST00000396641.7	protein_coding	1/1					INFO_REALIGN_3_PRIME	chr3	TogoVar
LRRC3B_chr3_26617772_26715776	26671373	T T	TATATATA others(27): Show TATATATATATATATATATATAGAGAGAGAGAGAG	intron_variant intron_variant	MODIFIER	HG03516.hp1 HG03516.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0003 a0001c0002t0003	a0001c0002t0003g0348 a0001c0002t0003g0348	1	370	0.0027	34	c.-16 others(55): Show c.-160-38139_-160-38138insTATATATATATATATATATAGAGA GAGAGAGAGA		LRRC3B	ENSG00000179796.13	transcript	ENST00000396641.7	protein_coding	1/1					INFO_REALIGN_3_PRIME	chr3	TogoVar
LRRC3B_chr3_26617772_26715776	26671373	T T	TATATATA others(27): Show TATATATATATATATATATATATATATATAGAGAG	intron_variant intron_variant	MODIFIER	NA19065.hp2 NA19065.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0333 a0001c0001t0001g0333	1	370	0.0027	34	c.-16 others(55): Show c.-160-38139_-160-38138insTATATATATATATATATATATATA TATAGAGAGA		LRRC3B	ENSG00000179796.13	transcript	ENST00000396641.7	protein_coding	1/1					INFO_REALIGN_3_PRIME	chr3	TogoVar
LRRC3B_chr3_26617772_26715776	26671413	G G	GAGAGAGA others(27): Show GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAC	intron_variant intron_variant	MODIFIER	HG00609.hp2 HG00609.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0182 a0001c0001t0001g0182	1	370	0.0027	34	c.-16 others(55): Show c.-160-38099_-160-38098insGAGAGAGAGAGAGAGAGAGAGAGA GAGAGAGACA		LRRC3B	ENSG00000179796.13	transcript	ENST00000396641.7	protein_coding	1/1					INFO_REALIGN_3_PRIME	chr3	TogoVar
LRRC4B_chr19_50511892_50573435	50543335	G G	GGTGTGTG others(27): Show GGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT	intron_variant intron_variant	MODIFIER	HG02622.hp2 HG02622.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0005 a0001c0001t0005	a0001c0001t0005g0004 a0001c0001t0005g0004	1	360	0.0028	34	c.297 others(51): Show c.297+5206_297+5207insACACACACACACACACACACACACACAC ACACAC		LRRC4B	ENSG00000131409.13	transcript	ENST00000652263.1	protein_coding	2/2						chr19	TogoVar
LRRC4C_chr11_40109209_41464652	40584177	C C	CATATATA others(27): Show CATATATATATATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG01261.hp1 HG02698.hp2 NA19030.hp2 HG01261.hp1 HG02698.hp2 NA19030.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0001 a0001c0001t0002 a0001c0002t0002 a0001c0001t0001 a0001c0001t0002 a0001c0002t0002	a0001c0001t0001g0004 a0001c0001t0002g0032 a0001c0002t0002g0012 a0001c0001t0001g0004 a0001c0001t0002g0032 a0001c0002t0002g0012	3	48	0.0625	34	c.-27 others(55): Show c.-270+63964_-270+63965insATATATATATATATATATATATAT ATATATATAT		LRRC4C	ENSG00000148948.8	transcript	ENST00000528697.6	protein_coding	3/6						chr11	TogoVar
LRRC4C_chr11_40109209_41464652	40696288	A A	ATATATAT others(27): Show ATATATATATATATATATATATATATATATATGAG	intron_variant intron_variant	MODIFIER	NA20300.hp1 NA20300.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0028 a0001c0001t0001g0028	1	48	0.0208	34	c.-40 others(55): Show c.-406-48011_-406-48010insCTCATATATATATATATATATATA TATATATATA		LRRC4C	ENSG00000148948.8	transcript	ENST00000528697.6	protein_coding	2/6						chr11	TogoVar
LRRC56_chr11_532527_559912	542580	C C	CAAAAAAA others(27): Show CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG02109.hp2 HG02976.hp2 HG02109.hp2 HG02976.hp2	a0003 a0003	a0003c0003 a0003c0003	a0003c0003t0006 a0003c0003t0006	a0003c0003t0006g0024 a0003c0003t0006g0024	2	387	0.0052	34	c.265 others(49): Show c.265+980_265+981insAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAA		LRRC56	ENSG00000161328.11	transcript	ENST00000270115.8	protein_coding	5/13					INFO_REALIGN_3_PRIME	chr11	TogoVar
LRRC57_chr15_42532829_42553793	42537248	C C	CACACACA others(27): Show CACACACACACACACACACACACACACACACACAT	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02109.hp2 HG02647.hp1 HG02109.hp2 HG02647.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0007 a0001c0001t0016 a0001c0001t0007 a0001c0001t0016	a0001c0001t0007g0007 a0001c0001t0016g0018 a0001c0001t0007g0007 a0001c0001t0016g0018	2	356	0.0056	34	c.68 others(45): Show c.6834_*6835insATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT		LRRC57	ENSG00000180979.10	transcript	ENST00000397130.8	protein_coding					580		chr15	TogoVar
LRRC57_chr15_42532829_42553793	42544842	C C	CACAATAT others(27): Show CACAATATATATATATATATATATATATATATATA	intron_variant intron_variant	MODIFIER	HG03098.hp2 HG03098.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0029 a0001c0001t0029	a0001c0001t0029g0049 a0001c0001t0029g0049	1	356	0.0028	34	c.678 others(49): Show c.678+234_678+235insTATATATATATATATATATATATATATATA TTGT		LRRC57	ENSG00000180979.10	transcript	ENST00000397130.8	protein_coding	5/5						chr15	TogoVar
LRRC57_chr15_42532829_42553793	42544842	C C	CACACACT others(27): Show CACACACTATATATATATATATATATATATATATA	intron_variant intron_variant	MODIFIER	HG02622.hp2 NA18522.hp1 HG02622.hp2 NA18522.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0014 a0001c0002t0014	a0001c0002t0014g0032 a0001c0002t0014g0032	2	356	0.0056	34	c.678 others(49): Show c.678+234_678+235insTATATATATATATATATATATATATATAGT GTGT		LRRC57	ENSG00000180979.10	transcript	ENST00000397130.8	protein_coding	5/5						chr15	TogoVar
LRRC57_chr15_42532829_42553793	42550565	A A	ACCCATTG others(27): Show ACCCATTGTCTGGGTGATGGGGAGATTCAGGTGGT	upstream_gene_variant upstream_gene_variant	MODIFIER	HG03225.hp2 HG03225.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0111 a0001c0001t0111	a0001c0001t0111g0122 a0001c0001t0111g0122	1	356	0.0028	34	c.-19 others(45): Show c.-1929_-1896dupACCACCTGAATCTCCCCATCACCCAGACAATGGG		LRRC57	ENSG00000180979.10	transcript	ENST00000397130.8	protein_coding					1773		chr15	TogoVar
LRRC58_chr3_120319509_120354354	120349126	G G	GGGCCGCA others(27): Show GGGCCGCAGCCGCCGCGGCAGCGCTCCCGCGCCAC	frameshift_variant frameshift_variant	HIGH	HG01433.hp2 HG01433.hp2	a0004 a0004	a0004c0011 a0004c0011	a0004c0011t0062 a0004c0011t0062	a0004c0011t0062g0192 a0004c0011t0062g0192	1	376	0.0027	34	c.117 others(41): Show c.117_118insGTGGCGCGGGAGCGCTGCCGCGGCGGCTGCGGCC	p.Arg others(4): Show p.Arg40fs	LRRC58	ENSG00000163428.4	transcript	ENST00000295628.4	protein_coding	1/4	228/7918	117/1116	39/371			chr3	TogoVar
LRRC63_chr13_46206928_46282115	46255645	A A	AATATATA others(27): Show AATATATATATATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG00408.hp2 HG00621.hp1 HG00639.hp1 others(20): Show HG00408.hp2 HG00621.hp1 HG00639.hp1 HG01346.hp1 HG01433.hp2 HG01981.hp1 HG01981.hp2 HG01993.hp2 HG02818.hp2 HG03017.hp1 HG03041.hp2 HG03490.hp1 HG03492.hp1 HG04184.hp2 NA18612.hp2 NA18747.hp2 NA18946.hp2 NA18961.hp1 NA18969.hp2 NA18973.hp2 NA19074.hp1 NA19079.hp1 NA19088.hp2	a0001 a0002 a0005 others(1): Show a0001 a0002 a0005 a0007	a0001c0001 a0002c0002 a0005c0012 others(1): Show a0001c0001 a0002c0002 a0005c0012 a0007c0007	a0001c0001t0001 a0001c0001t0002 a0002c0002t0001 others(7): Show a0001c0001t0001 a0001c0001t0002 a0002c0002t0001 a0002c0002t0002 a0002c0002t0005 a0002c0002t0010 a0002c0002t0011 a0002c0002t0012 a0005c0012t0007 a0007c0007t0001	a0001c0001t0001g0222 a0001c0001t0002g0235 a0002c0002t0001g0252 others(18): Show a0001c0001t0001g0222 a0001c0001t0002g0235 a0002c0002t0001g0252 a0002c0002t0001g0297 a0002c0002t0002g0038 a0002c0002t0002g0159 a0002c0002t0002g0260 a0002c0002t0002g0267 a0002c0002t0002g0271 a0002c0002t0002g0278 a0002c0002t0002g0293 a0002c0002t0005g0255 a0002c0002t0005g0258 a0002c0002t0010g0162 a0002c0002t0011g0272 a0002c0002t0012g0285 a0005c0012t0007g0027 a0005c0012t0007g0155 a0007c0007t0001g0287 a0007c0007t0001g0288 a0007c0007t0001g0290	23	386	0.0596	34	c.122 others(53): Show c.1226+5175_1226+5176insTATATATATATATATATATATATATA TATATATA		LRRC63	ENSG00000173988.14	transcript	ENST00000595396.3	protein_coding	7/9					INFO_REALIGN_3_PRIME	chr13	TogoVar
LRRC71_chr1_156915632_156938094	156930060	T T	TTCTTTCT others(27): Show TTCTTTCTTTCTTTTTCTTTCTTTCTTTTTCTTTC	intron_variant intron_variant	MODIFIER	HG01891.hp2 HG02615.hp2 HG02818.hp2 others(6): Show HG01891.hp2 HG02615.hp2 HG02818.hp2 HG02965.hp1 HG03453.hp1 HG03471.hp2 HG03486.hp1 HG03516.hp1 HG06807.hp1	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0001 a0002c0002t0001	a0002c0002t0001g0088 a0002c0002t0001g0092 a0002c0002t0001g0103 others(6): Show a0002c0002t0001g0088 a0002c0002t0001g0092 a0002c0002t0001g0103 a0002c0002t0001g0104 a0002c0002t0001g0113 a0002c0002t0001g0114 a0002c0002t0001g0134 a0002c0002t0001g0161 a0002c0002t0001g0171	9	402	0.0224	34	c.124 others(51): Show c.1240+332_1240+333insCTTTCTTTCTTTTTCTTTCTTTCTTTTT CTTTCT		LRRC71	ENSG00000160838.14	transcript	ENST00000337428.8	protein_coding	11/14					INFO_REALIGN_3_PRIME	chr1	TogoVar
LRRC71_chr1_156915632_156938094	156936497	A A	AAAAAAAA others(27): Show AAAAAAAAAATAAAAAAAAAAATATATATATATAT	downstream_gene_variant downstream_gene_variant	MODIFIER	NA20129.hp2 NA20129.hp2	a0003 a0003	a0003c0004 a0003c0004	a0003c0004t0001 a0003c0004t0001	a0003c0004t0001g0138 a0003c0004t0001g0138	1	402	0.0025	34	c.35 others(45): Show c.3528_*3529insAAAAAAAAATAAAAAAAAAAATATATATATATAT		LRRC71	ENSG00000160838.14	transcript	ENST00000337428.8	protein_coding					3404		chr1	TogoVar
LRRC73_chr6_43501968_43515346	43502076	A A	ACACACAC others(27): Show ACACACACACACACACACACACACACTCTCTCTCT	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02818.hp1 HG02818.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0030 a0001c0001t0001g0030	1	366	0.0027	34	c.51 others(45): Show c.5161_*5162insAGAGAGAGAGTGTGTGTGTGTGTGTGTGTGTGTG		LRRC73	ENSG00000204052.5	transcript	ENST00000372441.2	protein_coding					4891		chr6	TogoVar
LRRC74A_chr14_76821408_76875304	76867085	T T	TGTGTGTG others(27): Show TGTGTGTGTGTGGGGGGTGTGTGTTGGGGGGTGGG	intron_variant intron_variant	MODIFIER	NA18948.hp1 NA18948.hp1	a0003 a0003	a0003c0003 a0003c0003	a0003c0003t0002 a0003c0003t0002	a0003c0003t0002g0380 a0003c0003t0002g0380	1	408	0.0025	34	c.130 others(51): Show c.1309-241_1309-240insTGGGGTGTGTGTGTGGGGGGTGTGTGTT GGGGGG		LRRC74A	ENSG00000100565.16	transcript	ENST00000689127.1	protein_coding	12/13					INFO_REALIGN_3_PRIME	chr14	TogoVar
LRRC74A_chr14_76821408_76875304	76867085	T T	TGTGTGTG others(27): Show TGTGTGTGTGTGTGGGGTGTGTGTTGGGGGGTGGG	intron_variant intron_variant	MODIFIER	HG01081.hp2 HG01891.hp2 HG02630.hp1 others(13): Show HG01081.hp2 HG01891.hp2 HG02630.hp1 HG02630.hp2 HG02717.hp2 HG02818.hp1 HG02895.hp1 HG02897.hp2 HG02922.hp2 HG02970.hp2 HG03130.hp1 HG03209.hp1 HG03540.hp2 HG06807.hp2 NA18906.hp1 NA21309.hp2	a0001 a0006 a0007 a0001 a0006 a0007	a0001c0001 a0001c0007 a0001c0011 others(2): Show a0001c0001 a0001c0007 a0001c0011 a0006c0012 a0007c0026	a0001c0001t0004 a0001c0001t0006 a0001c0001t0009 others(4): Show a0001c0001t0004 a0001c0001t0006 a0001c0001t0009 a0001c0007t0004 a0001c0011t0004 a0006c0012t0004 a0007c0026t0004	a0001c0001t0004g0038 a0001c0001t0004g0234 a0001c0001t0004g0235 others(13): Show a0001c0001t0004g0038 a0001c0001t0004g0234 a0001c0001t0004g0235 a0001c0001t0004g0296 a0001c0001t0004g0297 a0001c0001t0004g0303 a0001c0001t0004g0323 a0001c0001t0006g0066 a0001c0001t0006g0067 a0001c0001t0006g0071 a0001c0001t0009g0022 a0001c0007t0004g0193 a0001c0011t0004g0325 a0006c0012t0004g0245 a0006c0012t0004g0246 a0007c0026t0004g0211	16	408	0.0392	34	c.130 others(51): Show c.1309-260_1309-259insTGGGGTGTGTGTTGGGGGGTGGGGTGTG TGTGTG		LRRC74A	ENSG00000100565.16	transcript	ENST00000689127.1	protein_coding	12/13					INFO_REALIGN_3_PRIME	chr14	TogoVar
LRRC74A_chr14_76821408_76875304	76867095	T T	TGGGGGGT others(27): Show TGGGGGGTGTGTGTTGGGGGGTGGGGTGTGTGTGG	intron_variant intron_variant	MODIFIER	HG02647.hp1 HG02809.hp2 NA19240.hp1 HG02647.hp1 HG02809.hp2 NA19240.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0002c0002 a0001c0001 a0002c0002	a0001c0001t0001 a0002c0002t0005 a0001c0001t0001 a0002c0002t0005	a0001c0001t0001g0034 a0001c0001t0001g0037 a0002c0002t0005g0023 a0001c0001t0001g0034 a0001c0001t0001g0037 a0002c0002t0005g0023	3	408	0.0074	34	c.130 others(51): Show c.1309-241_1309-240insTGGGGTGTGTGTGGGGGGGGTGTGTGTT GGGGGG		LRRC74A	ENSG00000100565.16	transcript	ENST00000689127.1	protein_coding	12/13					INFO_REALIGN_3_PRIME	chr14	TogoVar
LRRC7_chr1_69562922_70149364	69718142	G G	GAAAGAAA others(27): Show GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA	intron_variant intron_variant	MODIFIER	HG01192.hp2 HG02145.hp2 HG02257.hp2 others(5): Show HG01192.hp2 HG02145.hp2 HG02257.hp2 HG02895.hp2 HG02970.hp2 HG02976.hp2 HG03130.hp2 HG03195.hp1	a0001 a0004 a0001 a0004	a0001c0001 a0004c0014 a0001c0001 a0004c0014	a0001c0001t0003 a0001c0001t0010 a0001c0001t0013 others(5): Show a0001c0001t0003 a0001c0001t0010 a0001c0001t0013 a0001c0001t0015 a0001c0001t0018 a0001c0001t0019 a0001c0001t0077 a0004c0014t0062	a0001c0001t0003g0041 a0001c0001t0010g0043 a0001c0001t0013g0084 others(5): Show a0001c0001t0003g0041 a0001c0001t0010g0043 a0001c0001t0013g0084 a0001c0001t0015g0086 a0001c0001t0018g0023 a0001c0001t0019g0038 a0001c0001t0077g0055 a0004c0014t0062g0096	8	108	0.0741	34	c.100 others(53): Show c.100+39665_100+39666insAAGAAAGAAAGAAAGAAAGAAAGAAA GAAAGAAA		LRRC7	ENSG00000033122.21	transcript	ENST00000651989.2	protein_coding	2/26					INFO_REALIGN_3_PRIME	chr1	TogoVar
LRRC7_chr1_69562922_70149364	69718142	G G	GAGAGAAA others(27): Show GAGAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA	intron_variant intron_variant	MODIFIER	HG01167.hp2 NA19240.hp2 HG01167.hp2 NA19240.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0016 a0001c0001t0070 a0001c0001t0016 a0001c0001t0070	a0001c0001t0016g0032 a0001c0001t0070g0064 a0001c0001t0016g0032 a0001c0001t0070g0064	2	108	0.0185	34	c.100 others(53): Show c.100+39667_100+39668insGAAAGAAAGAAAGAAAGAAAGAAAGA AAGAAAGA		LRRC7	ENSG00000033122.21	transcript	ENST00000651989.2	protein_coding	2/26					INFO_REALIGN_3_PRIME	chr1	TogoVar
LRRC9_chr14_59915144_60071817	60067740	A A	AATATATA others(27): Show AATATATATATATATATATATATATATATATATAT	downstream_gene_variant downstream_gene_variant	MODIFIER	NA18945.hp1 NA19083.hp2 NA18945.hp1 NA19083.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0006 a0001c0001t0003 a0001c0001t0006	a0001c0001t0003g0018 a0001c0001t0006g0020 a0001c0001t0003g0018 a0001c0001t0006g0020	2	322	0.0062	34	c.43 others(45): Show c.4378_*4379insATATATATATATATATATATATATATATATATAT		LRRC9	ENSG00000131951.12	transcript	ENST00000570145.2	protein_coding					924		chr14	TogoVar
LRRFIP1_chr2_237622587_237786643	237666797	C C	CTTTCTCT others(27): Show CTTTCTCTTTCTTTCTCTTTCTTTCTCTTTCTCTT	intron_variant intron_variant	MODIFIER	HG01099.hp1 HG02055.hp1 HG02258.hp1 others(4): Show HG01099.hp1 HG02055.hp1 HG02258.hp1 HG02572.hp2 HG02723.hp2 HG03195.hp1 HG03195.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0001 a0001c0001t0004 a0001c0001t0041 others(1): Show a0001c0001t0001 a0001c0001t0004 a0001c0001t0041 a0001c0002t0003	a0001c0001t0001g0006 a0001c0001t0001g0008 a0001c0001t0001g0009 others(4): Show a0001c0001t0001g0006 a0001c0001t0001g0008 a0001c0001t0001g0009 a0001c0001t0001g0010 a0001c0001t0004g0043 a0001c0001t0041g0011 a0001c0002t0003g0231	7	276	0.0254	34	c.96+ others(51): Show c.96+39058_96+39059insTTCTCTTTCTTTCTCTTTCTTTCTCTTT CTCTTT		LRRFIP1	ENSG00000124831.20	transcript	ENST00000308482.14	protein_coding	1/23					INFO_REALIGN_3_PRIME	chr2	TogoVar
LRRIQ1_chr12_85031351_85250105	85236830	C C	CATATATA others(27): Show CATATATATATATATCTATATATATATATATATAT	intron_variant intron_variant	MODIFIER	NA19074.hp2 NA19074.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0135 a0001c0001t0002g0135	1	228	0.0044	34	c.501 others(53): Show c.5016+4088_5016+4089insCTATATATATATATATATATATATAT ATATATAT		LRRIQ1	ENSG00000133640.20	transcript	ENST00000393217.7	protein_coding	26/26					INFO_REALIGN_3_PRIME	chr12	TogoVar
LRRIQ1_chr12_85031351_85250105	85236830	C C	CATATATA others(27): Show CATATATATATATATCTATCTATCTATATATATAT	intron_variant intron_variant	MODIFIER	HG03540.hp1 HG03540.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0123 a0001c0001t0002g0123	1	228	0.0044	34	c.501 others(53): Show c.5016+4088_5016+4089insCTATCTATCTATATATATATATATAT ATATATAT		LRRIQ1	ENSG00000133640.20	transcript	ENST00000393217.7	protein_coding	26/26					INFO_REALIGN_3_PRIME	chr12	TogoVar
LRRK2_chr12_40219997_40374285	40298778	A A	AATATATA others(27): Show AATATATATATATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	NA18966.hp1 NA18966.hp1	a0002 a0002	a0002c0001 a0002c0001	a0002c0001t0001 a0002c0001t0001	a0002c0001t0001g0114 a0002c0001t0001g0114	1	382	0.0026	34	c.334 others(51): Show c.3347+306_3347+307insTATATATATATATATATATATATATATA TATATA		LRRK2	ENSG00000188906.17	transcript	ENST00000298910.12	protein_coding	24/50					INFO_REALIGN_3_PRIME	chr12	TogoVar
LRRN1_chr3_3794431_3854834	3834525	G G	GATATATA others(27): Show GATATATATATATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG00544.hp1 HG00558.hp1 HG02698.hp2 others(2): Show HG00544.hp1 HG00558.hp1 HG02698.hp2 HG02809.hp2 HG04204.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0001 a0001c0001t0003 a0001c0001t0055 others(1): Show a0001c0001t0001 a0001c0001t0003 a0001c0001t0055 a0001c0002t0002	a0001c0001t0001g0276 a0001c0001t0003g0352 a0001c0001t0003g0368 others(2): Show a0001c0001t0001g0276 a0001c0001t0003g0352 a0001c0001t0003g0368 a0001c0001t0055g0071 a0001c0002t0002g0229	5	422	0.0119	34	c.-27 others(53): Show c.-278-9811_-278-9810insATATATATATATATATATATATATAT ATATATAT		LRRN1	ENSG00000175928.6	transcript	ENST00000319331.4	protein_coding	1/1					INFO_REALIGN_3_PRIME	chr3	TogoVar
LRRTM3_chr10_66921036_67106551	66978552	A A	AAAAAAAA others(27): Show AAAAAAAATATATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG03927.hp1 NA19003.hp1 NA19070.hp2 HG03927.hp1 NA19003.hp1 NA19070.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0002c0002 a0001c0001 a0002c0002	a0001c0001t0001 a0002c0002t0004 a0001c0001t0001 a0002c0002t0004	a0001c0001t0001g0202 a0001c0001t0001g0211 a0002c0002t0004g0175 a0001c0001t0001g0202 a0001c0001t0001g0211 a0002c0002t0004g0175	3	294	0.0102	34	c.153 others(55): Show c.1536+50101_1536+50102insAAAAAATATATATATATATATATA TATATATATA		LRRTM3	ENSG00000198739.11	transcript	ENST00000361320.5	protein_coding	2/2					INFO_REALIGN_3_PRIME	chr10	TogoVar

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