Joint Open Genome and Omics Platform (JoGo)

Search by Variant

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Chr

Chromosome name (e.g., chr11).

Snpeff genename

Exact SnpEff gene name.

Sampleids

Target sampleid (e.g. HG02615).

Snpeff haplotype class

Haplotype-annotation class (e.g., ahapid, ahapid+chapid).

Snpeff annotation impact

Exact impact level (e.g., HIGH, MODERATE, LOW).

Snpeff annotation impact detail

Keyword match in SnpEff annotation.

Hapid

One or more haplotype IDs (comma-separated; e.g., a0001, a01, a0001c0001, a01c02, a1c2, a0001c0001t0005, a0001c0001t0005g0018).

Samplehapid

Sample haplotype IDs to include (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

No_hapid

Haplotype IDs to exclude (comma-separated; e.g., a0001, a0002, a0001c0001, a0001c0001t0005, a1, a01).

No_samplehapid

Sample haplotype IDs to exclude (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

Start

Start position (GRCh38).

End

End position (GRCh38).

Minac

Minimum alternate allele count (≥).

Maxac

Maximum alternate allele count (≤).

Minlen

Minimum variant length (≥).

Maxlen

Maximum variant length (≤).

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regionname	pos	ref	alt	annotation	impact	samples	ahapids	achapids	acthapids	actghapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	external
LRRTM3_chr10_66921036_67106551	66978552	A A	AAAATATA others(27): Show AAAATATATATATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	NA18942.hp1 NA18993.hp2 NA18942.hp1 NA18993.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0001 a0001c0001t0002	a0001c0001t0001g0204 a0001c0001t0002g0198 a0001c0001t0001g0204 a0001c0001t0002g0198	2	294	0.0068	34	c.153 others(55): Show c.1536+50101_1536+50102insAATATATATATATATATATATATA TATATATATA	LRRTM3	ENSG00000198739.11	transcript	ENST00000361320.5	protein_coding	2/2		INFO_REALIGN_3_PRIME	chr10	TogoVar
LRRTM3_chr10_66921036_67106551	66978552	A A	ATAAAAAA others(27): Show ATAAAAAAAATAAAAAAAAAAAAAAATATATATAT	intron_variant intron_variant	MODIFIER	HG01169.hp2 HG01169.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0136 a0001c0001t0002g0136	1	294	0.0034	34	c.153 others(55): Show c.1536+50100_1536+50101insTAAAAAAAATAAAAAAAAAAAAAA ATATATATAT	LRRTM3	ENSG00000198739.11	transcript	ENST00000361320.5	protein_coding	2/2			chr10	TogoVar
LRRTM3_chr10_66921036_67106551	66978552	A A	ATAAAAAA others(27): Show ATAAAAAAAATAAAAAAAAAAAAATATATATATAT	intron_variant intron_variant	MODIFIER	HG00323.hp2 NA18983.hp2 HG00323.hp2 NA18983.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0145 a0001c0001t0002g0217 a0001c0001t0002g0145 a0001c0001t0002g0217	2	294	0.0068	34	c.153 others(55): Show c.1536+50100_1536+50101insTAAAAAAAATAAAAAAAAAAAAAT ATATATATAT	LRRTM3	ENSG00000198739.11	transcript	ENST00000361320.5	protein_coding	2/2			chr10	TogoVar
LRRTM4_chr2_76742685_77527376	76812673	C C	CTTTCTTT others(27): Show CTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTT	intron_variant intron_variant	MODIFIER	HG00735.hp2 HG00735.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0004	a0001c0001t0004g0025 a0001c0001t0004g0025	1	128	0.0078	34	c.155 others(55): Show c.1552-63758_1552-63757insAAGAAAGAAAGAAAGAAAGAAAGA AAGAAAGAAA	LRRTM4	ENSG00000176204.14	transcript	ENST00000409884.6	protein_coding	3/3			chr2	TogoVar
LRRTM4_chr2_76742685_77527376	76979541	G G	GTATATAT others(27): Show GTATATATATATATATATATATATATATATATATA	intron_variant intron_variant	MODIFIER	HG01109.hp1 HG02055.hp1 HG02486.hp2 others(7): Show HG01109.hp1 HG02055.hp1 HG02486.hp2 HG02735.hp1 HG02818.hp1 HG02886.hp2 HG03225.hp1 HG03579.hp2 NA18522.hp2 NA18953.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(2): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0005 a0001c0001t0011	a0001c0001t0001g0020 a0001c0001t0002g0035 a0001c0001t0002g0051 others(7): Show a0001c0001t0001g0020 a0001c0001t0002g0035 a0001c0001t0002g0051 a0001c0001t0002g0080 a0001c0001t0002g0086 a0001c0001t0002g0105 a0001c0001t0002g0121 a0001c0001t0003g0054 a0001c0001t0005g0026 a0001c0001t0011g0120	10	128	0.0781	34	c.155 others(57): Show c.1552-230626_1552-230625insTATATATATATATATATATATA TATATATATATA	LRRTM4	ENSG00000176204.14	transcript	ENST00000409884.6	protein_coding	3/3			chr2	TogoVar
LRRTM4_chr2_76742685_77527376	76979541	G G	GTGTATAT others(27): Show GTGTATATATATATATATATATATATATATATATA	intron_variant intron_variant	MODIFIER	HG06807.hp2 HG06807.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0107 a0001c0001t0001g0107	1	128	0.0078	34	c.155 others(57): Show c.1552-230626_1552-230625insTATATATATATATATATATATA TATATATATACA	LRRTM4	ENSG00000176204.14	transcript	ENST00000409884.6	protein_coding	3/3			chr2	TogoVar
LRRTM4_chr2_76742685_77527376	77029052	A A	AAAATATA others(27): Show AAAATATATATATATATATATAATATATATATGTT	intron_variant intron_variant	MODIFIER	HG03209.hp1 HG03209.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0006 a0001c0001t0006	a0001c0001t0006g0082 a0001c0001t0006g0082	1	128	0.0078	34	c.155 others(57): Show c.1552-280137_1552-280136insAACATATATATATTATATATAT ATATATATATTT	LRRTM4	ENSG00000176204.14	transcript	ENST00000409884.6	protein_coding	3/3			chr2	TogoVar
LRRTM4_chr2_76742685_77527376	77207372	T T	TATATATA others(27): Show TATATATATATATATATATATATATATACACACAC	intron_variant intron_variant	MODIFIER	NA19066.hp1 NA19066.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0048 a0001c0001t0001g0048	1	128	0.0078	34	c.155 others(57): Show c.1551+310945_1551+310946insGTGTGTGTATATATATATATAT ATATATATATAT	LRRTM4	ENSG00000176204.14	transcript	ENST00000409884.6	protein_coding	3/3			chr2	TogoVar
LRWD1_chr7_102459984_102478168	102463322	C C	CTTTTTTT others(27): Show CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02258.hp1 HG02258.hp1	a0005 a0005	a0005c0013 a0005c0013	a0005c0013t0002 a0005c0013t0002	a0005c0013t0002g0168 a0005c0013t0002g0168	1	428	0.0023	34	c.-17 others(45): Show c.-1759_-1758insTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	LRWD1	ENSG00000161036.13	transcript	ENST00000292616.10	protein_coding		1661		chr7	TogoVar
LSAMP_chr3_115797374_116450487	116273683	C C	CAGATATA others(27): Show CAGATATATATATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG02572.hp1 HG02622.hp2 HG03130.hp1 others(1): Show HG02572.hp1 HG02622.hp2 HG03130.hp1 NA21309.hp1	a0001 a0001	a0001c0001 a0001c0005 a0001c0001 a0001c0005	a0001c0001t0002 a0001c0001t0004 a0001c0001t0061 others(1): Show a0001c0001t0002 a0001c0001t0004 a0001c0001t0061 a0001c0005t0001	a0001c0001t0002g0094 a0001c0001t0004g0088 a0001c0001t0061g0075 others(1): Show a0001c0001t0002g0094 a0001c0001t0004g0088 a0001c0001t0061g0075 a0001c0005t0001g0067	4	104	0.0385	34	c.155 others(55): Show c.155+171193_155+171194insATATATATATATATATATATATAT ATATATATCT	LSAMP	ENSG00000185565.13	transcript	ENST00000490035.7	protein_coding	1/6			chr3	TogoVar
LSAMP_chr3_115797374_116450487	116273707	T T	TATATATA others(27): Show TATATATATATATATATATATATATATATATACAC	intron_variant intron_variant	MODIFIER	HG02258.hp1 HG02735.hp2 HG02258.hp1 HG02735.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0044 a0001c0001t0002 a0001c0001t0044	a0001c0001t0002g0061 a0001c0001t0044g0009 a0001c0001t0002g0061 a0001c0001t0044g0009	2	104	0.0192	34	c.155 others(55): Show c.155+171169_155+171170insGTGTATATATATATATATATATAT ATATATATAT	LSAMP	ENSG00000185565.13	transcript	ENST00000490035.7	protein_coding	1/6			chr3	TogoVar
LSAMP_chr3_115797374_116450487	116433558	C C	CTAAGATG others(27): Show CTAAGATGCAATGCCCAGGTAAGCATCACTATCAG	intron_variant intron_variant	MODIFIER	NA18977.hp1 NA18977.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0054 a0001c0002t0054	a0001c0002t0054g0086 a0001c0002t0054g0086	1	104	0.0096	34	c.155 others(53): Show c.155+11285_155+11318dupCTGATAGTGATGCTTACCTGGGCATT GCATCTTA	LSAMP	ENSG00000185565.13	transcript	ENST00000490035.7	protein_coding	1/6			chr3	TogoVar
LSG1_chr3_194635791_194677191	194645511	C C	CACACACA others(27): Show CACACACACACACACACACACACACACACAGACAG	intron_variant intron_variant	MODIFIER	NA18990.hp2 NA18990.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0137 a0001c0001t0003g0137	1	408	0.0025	34	c.162 others(51): Show c.1623+652_1623+653insCTGTCTGTGTGTGTGTGTGTGTGTGTGT GTGTGT	LSG1	ENSG00000041802.11	transcript	ENST00000265245.10	protein_coding	12/13			chr3	TogoVar
LSG1_chr3_194635791_194677191	194667942	A A	AAAAAAAA others(27): Show AAAAAAAAAAAAAAAAAATATATATATATATATAT	intron_variant intron_variant	MODIFIER	NA19030.hp1 NA19030.hp1	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0013 a0002c0002t0013	a0002c0002t0013g0230 a0002c0002t0013g0230	1	408	0.0025	34	c.227 others(51): Show c.227-1371_227-1370insATATATATATATATATATTTTTTTTTTT TTTTTT	LSG1	ENSG00000041802.11	transcript	ENST00000265245.10	protein_coding	2/13			chr3	TogoVar
LSM14A_chr19_34167504_34234288	34192316	G G	GTTTTTTT others(27): Show GTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG01928.hp1 HG01928.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0117 a0001c0001t0002g0117	1	315	0.0032	34	c.122 others(51): Show c.122-2160_122-2159insTTTTTTTTTTTTTTTTTTTTTTTTTTTT TTTTTT	LSM14A	ENSG00000257103.9	transcript	ENST00000544216.8	protein_coding	1/9		INFO_REALIGN_3_PRIME	chr19	TogoVar
LSP1_chr11_1848084_1897263	1873918	G G	GGAGGAGG others(27): Show GGAGGAGGGAGGCCGGCGGAGCAGGGAGCCCGGCA	intron_variant intron_variant	MODIFIER	HG03942.hp2 HG03942.hp2	a0002 a0002	a0002c0001 a0002c0001	a0002c0001t0001 a0002c0001t0001	a0002c0001t0001g0279 a0002c0001t0001g0279	1	360	0.0028	34	c.54- others(49): Show c.54-6153_54-6152insGGAGCAGGGAGCCCGGCAGAGGAGGGAGGC CGGC	LSP1	ENSG00000130592.17	transcript	ENST00000311604.8	protein_coding	1/10		INFO_REALIGN_3_PRIME	chr11	TogoVar
LSR_chr19_35244002_35272964	35251843	C C	CTTTTTTT others(27): Show CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG03834.hp1 HG03834.hp1	a0003 a0003	a0003c0003 a0003c0003	a0003c0003t0001 a0003c0003t0001	a0003c0003t0001g0165 a0003c0003t0001g0165	1	438	0.0023	34	c.454 others(51): Show c.454+1193_454+1194insTTTTTTTTTTTTTTTTTTTTTTTTTTTT TTTTTT	LSR	ENSG00000105699.17	transcript	ENST00000605618.6	protein_coding	2/9		INFO_REALIGN_3_PRIME	chr19	TogoVar
LTBP1_chr2_32941953_33404509	33328162	T T	TAAATAAA others(27): Show TAAATAAATAAATAAATAAATAAATAAATAAAATA	intron_variant intron_variant	MODIFIER	HG01243.hp1 HG02559.hp1 HG01243.hp1 HG02559.hp1	a0001 a0001	a0001c0013 a0001c0018 a0001c0013 a0001c0018	a0001c0013t0019 a0001c0018t0013 a0001c0013t0019 a0001c0018t0013	a0001c0013t0019g0076 a0001c0018t0013g0061 a0001c0013t0019g0076 a0001c0018t0013g0061	2	164	0.0122	34	c.373 others(55): Show c.3730+12900_3730+12901insTAAATAAATAAATAAATAAATAAA ATAAAATAAA	LTBP1	ENSG00000049323.16	transcript	ENST00000404816.7	protein_coding	24/33		INFO_REALIGN_3_PRIME	chr2	TogoVar
LTBP2_chr14_74493183_74617237	74564233	T T	TTATATAT others(27): Show TTATATATATTTATATATATTTATATATATATTTA	intron_variant intron_variant	MODIFIER	HG00423.hp2 HG00423.hp2	a0002 a0002	a0002c0004 a0002c0004	a0002c0004t0004 a0002c0004t0004	a0002c0004t0004g0035 a0002c0004t0004g0035	1	282	0.0036	34	c.831 others(51): Show c.831-8541_831-8540insTAAATATATATATAAATATATATAAATA TATATA	LTBP2	ENSG00000119681.12	transcript	ENST00000261978.9	protein_coding	3/35			chr14	TogoVar
LTBP4_chr19_40596369_40634818	40625264	A A	ATATATTT others(27): Show ATATATTTATATATATATATTTATATATATATATT	intron_variant intron_variant	MODIFIER	HG01109.hp2 HG01109.hp2	a0001 a0001	a0001c0006 a0001c0006	a0001c0006t0001 a0001c0006t0001	a0001c0006t0001g0163 a0001c0006t0001g0163	1	338	0.0030	34	c.383 others(51): Show c.3833-588_3833-587insTTATATATATATATTTATATATATATAT TTATAT	LTBP4	ENSG00000090006.18	transcript	ENST00000396819.8	protein_coding	26/29		INFO_REALIGN_3_PRIME	chr19	TogoVar
LTBP4_chr19_40596369_40634818	40633778	A A	AAGAAAGA others(27): Show AAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02280.hp2 HG02809.hp1 HG02965.hp1 others(1): Show HG02280.hp2 HG02809.hp1 HG02965.hp1 HG03130.hp1	a0001 a0001	a0001c0006 a0001c0006	a0001c0006t0003 a0001c0006t0003	a0001c0006t0003g0014 a0001c0006t0003g0289 a0001c0006t0003g0292 others(1): Show a0001c0006t0003g0014 a0001c0006t0003g0289 a0001c0006t0003g0292 a0001c0006t0003g0308	4	338	0.0118	34	c.42 others(45): Show c.4228_*4229insAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	LTBP4	ENSG00000090006.18	transcript	ENST00000396819.8	protein_coding		3961		chr19	TogoVar
LTN1_chr21_28923144_28997877	28927501	A A	ATATATAT others(27): Show ATATATATATATATATATATATATATATATATTTT	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01981.hp2 HG01981.hp2	a0001 a0001	a0001c0004 a0001c0004	a0001c0004t0001 a0001c0004t0001	a0001c0004t0001g0258 a0001c0004t0001g0258	1	404	0.0025	34	c.29 others(45): Show c.2946_*2947insAAAATATATATATATATATATATATATATATATA	LTN1	ENSG00000198862.14	transcript	ENST00000361371.10	protein_coding		642		chr21	TogoVar
LTN1_chr21_28923144_28997877	28927501	A A	ATATATAT others(27): Show ATATATATATATATATATATATATATATTTTTTTT	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02523.hp2 HG04204.hp2 NA18983.hp1 HG02523.hp2 HG04204.hp2 NA18983.hp1	a0001 a0004 a0001 a0004	a0001c0004 a0004c0005 a0001c0004 a0004c0005	a0001c0004t0001 a0004c0005t0001 a0001c0004t0001 a0004c0005t0001	a0001c0004t0001g0266 a0001c0004t0001g0292 a0004c0005t0001g0072 a0001c0004t0001g0266 a0001c0004t0001g0292 a0004c0005t0001g0072	3	404	0.0074	34	c.29 others(45): Show c.2946_*2947insAAAAAAAATATATATATATATATATATATATATA	LTN1	ENSG00000198862.14	transcript	ENST00000361371.10	protein_coding		642		chr21	TogoVar
LTN1_chr21_28923144_28997877	28927501	A A	ATATATAT others(27): Show ATATATATATATATATATATTTTTTTTTTTTTTTT	downstream_gene_variant downstream_gene_variant	MODIFIER	NA18954.hp1 NA18954.hp1	a0001 a0001	a0001c0004 a0001c0004	a0001c0004t0001 a0001c0004t0001	a0001c0004t0001g0002 a0001c0004t0001g0002	1	404	0.0025	34	c.29 others(45): Show c.2946_*2947insAAAAAAAAAAAAAAAATATATATATATATATATA	LTN1	ENSG00000198862.14	transcript	ENST00000361371.10	protein_coding		642		chr21	TogoVar
LURAP1L_chr9_12770020_12828060	12807094	A A	AATATATA others(27): Show AATATATATATATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG02148.hp2 HG02148.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0077 a0001c0001t0002g0077	1	418	0.0024	34	c.313 others(53): Show c.313-14268_313-14267insATATATATATATATATATATATATAT ATATATAT	LURAP1L	ENSG00000153714.6	transcript	ENST00000319264.4	protein_coding	1/1		INFO_REALIGN_3_PRIME	chr9	TogoVar
LUZP2_chr11_24492053_25087638	24602126	G G	GTATATGT others(27): Show GTATATGTGTATATATGTATATATGTATATATGTA	intron_variant intron_variant	MODIFIER	NA20129.hp2 NA20129.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0032 a0001c0001t0003g0032	1	116	0.0086	34	c.62+ others(53): Show c.62+104837_62+104870dupGTATATATGTATATATGTATATATGT GTATATAT	LUZP2	ENSG00000187398.12	transcript	ENST00000336930.11	protein_coding	1/11		INFO_REALIGN_3_PRIME	chr11	TogoVar
LY75_chr2_159798355_159909756	159848093	T T	TATACACA others(27): Show TATACACACACACACACACACACACACACACACAC	intron_variant intron_variant	MODIFIER	NA18942.hp2 NA18942.hp2	a0047 a0047	a0047c0055 a0047c0055	a0047c0055t0003 a0047c0055t0003	a0047c0055t0003g0275 a0047c0055t0003g0275	1	330	0.0030	34	c.315 others(53): Show c.3150+1886_3150+1887insGTGTGTGTGTGTGTGTGTGTGTGTGT GTGTGTAT	LY75	ENSG00000054219.11	transcript	ENST00000263636.5	protein_coding	23/34			chr2	TogoVar
LY75_chr2_159798355_159909756	159848093	T T	TATATATA others(27): Show TATATATACACACACACACACACACACACACACAC	intron_variant intron_variant	MODIFIER	NA18966.hp1 NA19010.hp2 NA18966.hp1 NA19010.hp2	a0015 a0015	a0015c0017 a0015c0017	a0015c0017t0001 a0015c0017t0001	a0015c0017t0001g0012 a0015c0017t0001g0013 a0015c0017t0001g0012 a0015c0017t0001g0013	2	330	0.0061	34	c.315 others(53): Show c.3150+1886_3150+1887insGTGTGTGTGTGTGTGTGTGTGTGTGT GTATATAT	LY75	ENSG00000054219.11	transcript	ENST00000263636.5	protein_coding	23/34			chr2	TogoVar
LY75_chr2_159798355_159909756	159848093	T T	TATATATA others(27): Show TATATATATACACACACACACACACACACACACAC	intron_variant intron_variant	MODIFIER	HG02622.hp2 HG03139.hp1 HG02622.hp2 HG03139.hp1	a0001 a0001	a0001c0008 a0001c0008	a0001c0008t0001 a0001c0008t0001	a0001c0008t0001g0145 a0001c0008t0001g0238 a0001c0008t0001g0145 a0001c0008t0001g0238	2	330	0.0061	34	c.315 others(53): Show c.3150+1886_3150+1887insGTGTGTGTGTGTGTGTGTGTGTGTGT ATATATAT	LY75	ENSG00000054219.11	transcript	ENST00000263636.5	protein_coding	23/34			chr2	TogoVar
LY75_chr2_159798355_159909756	159850789	T T	TATATATA others(27): Show TATATATATATATATATATATATATATATATAAAA	intron_variant intron_variant	MODIFIER	HG00323.hp1 HG03239.hp2 HG00323.hp1 HG03239.hp2	a0014 a0014	a0014c0022 a0014c0022	a0014c0022t0001 a0014c0022t0003 a0014c0022t0001 a0014c0022t0003	a0014c0022t0001g0104 a0014c0022t0003g0317 a0014c0022t0001g0104 a0014c0022t0003g0317	2	330	0.0061	34	c.288 others(51): Show c.2884-323_2884-322insTTTTATATATATATATATATATATATAT ATATAT	LY75	ENSG00000054219.11	transcript	ENST00000263636.5	protein_coding	21/34			chr2	TogoVar
LY75_chr2_159798355_159909756	159850791	T T	TATATATA others(27): Show TATATATATATATATATATATATATATATAAATAA	intron_variant intron_variant	MODIFIER	HG02145.hp2 HG02280.hp2 HG02451.hp2 HG02145.hp2 HG02280.hp2 HG02451.hp2	a0009 a0040 a0041 a0009 a0040 a0041	a0009c0012 a0040c0048 a0041c0049 a0009c0012 a0040c0048 a0041c0049	a0009c0012t0001 a0040c0048t0001 a0041c0049t0001 a0009c0012t0001 a0040c0048t0001 a0041c0049t0001	a0009c0012t0001g0244 a0040c0048t0001g0216 a0041c0049t0001g0224 a0009c0012t0001g0244 a0040c0048t0001g0216 a0041c0049t0001g0224	3	330	0.0091	34	c.288 others(51): Show c.2884-325_2884-324insTTATTTATATATATATATATATATATAT ATATAT	LY75	ENSG00000054219.11	transcript	ENST00000263636.5	protein_coding	21/34			chr2	TogoVar
LY75_chr2_159798355_159909756	159850791	T T	TATATATA others(27): Show TATATATATATATATATATATATATATATATAAAA	intron_variant intron_variant	MODIFIER	HG00280.hp2 HG01069.hp1 HG01071.hp1 others(4): Show HG00280.hp2 HG01069.hp1 HG01071.hp1 HG01099.hp2 HG01168.hp2 HG02818.hp2 HG03942.hp2	a0004 a0007 a0004 a0007	a0004c0010 a0007c0007 a0004c0010 a0007c0007	a0004c0010t0001 a0007c0007t0001 a0007c0007t0002 a0004c0010t0001 a0007c0007t0001 a0007c0007t0002	a0004c0010t0001g0058 a0007c0007t0001g0091 a0007c0007t0002g0092 others(4): Show a0004c0010t0001g0058 a0007c0007t0001g0091 a0007c0007t0002g0092 a0007c0007t0002g0100 a0007c0007t0002g0106 a0007c0007t0002g0107 a0007c0007t0002g0126	7	330	0.0212	34	c.288 others(51): Show c.2884-325_2884-324insTTTTATATATATATATATATATATATAT ATATAT	LY75	ENSG00000054219.11	transcript	ENST00000263636.5	protein_coding	21/34			chr2	TogoVar
LY75_chr2_159798355_159909756	159850791	T T	TATATATA others(27): Show TATATATATATATATATATATATATATATATATAA	intron_variant intron_variant	MODIFIER	NA19070.hp2 NA19070.hp2	a0010 a0010	a0010c0014 a0010c0014	a0010c0014t0002 a0010c0014t0002	a0010c0014t0002g0120 a0010c0014t0002g0120	1	330	0.0030	34	c.288 others(51): Show c.2884-325_2884-324insTTATATATATATATATATATATATATAT ATATAT	LY75	ENSG00000054219.11	transcript	ENST00000263636.5	protein_coding	21/34			chr2	TogoVar
LY86_chr6_6583720_6659982	6585671	T T	TAATATAT others(27): Show TAATATATATATATATATATATATATATATATATA	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02559.hp1 HG02559.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0001 a0001c0001t0001g0001	1	424	0.0024	34	c.-30 others(45): Show c.-3064_-3063insAATATATATATATATATATATATATATATATATA	LY86	ENSG00000112799.9	transcript	ENST00000230568.5	protein_coding		3048		chr6	TogoVar
LY86_chr6_6583720_6659982	6585671	T T	TTATATAT others(27): Show TTATATATATATATATATATATATATATATATATA	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01192.hp1 HG03540.hp2 NA18951.hp1 others(5): Show HG01192.hp1 HG03540.hp2 NA18951.hp1 NA18952.hp2 NA18970.hp1 NA18977.hp1 NA18993.hp2 NA18994.hp1	a0001 a0004 a0001 a0004	a0001c0001 a0004c0005 a0001c0001 a0004c0005	a0001c0001t0001 a0004c0005t0001 a0001c0001t0001 a0004c0005t0001	a0001c0001t0001g0115 a0001c0001t0001g0127 a0001c0001t0001g0156 others(5): Show a0001c0001t0001g0115 a0001c0001t0001g0127 a0001c0001t0001g0156 a0001c0001t0001g0173 a0001c0001t0001g0198 a0001c0001t0001g0243 a0001c0001t0001g0244 a0004c0005t0001g0121	8	424	0.0189	34	c.-30 others(45): Show c.-3064_-3063insTATATATATATATATATATATATATATATATATA	LY86	ENSG00000112799.9	transcript	ENST00000230568.5	protein_coding		3048		chr6	TogoVar
LY96_chr8_73986392_74034079	74002093	T T	TTCTTTCT others(27): Show TTCTTTCTTTCTTTCTTTCTTTCTCTCTCTCTCTC	intron_variant intron_variant	MODIFIER	HG02809.hp2 HG02809.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0027 a0001c0001t0002g0027	1	314	0.0032	34	c.113 others(51): Show c.113-2700_113-2699insTTCTTTCTTTCTTTCTTTCTCTCTCTCT CTCTCT	LY96	ENSG00000154589.7	transcript	ENST00000284818.7	protein_coding	1/4		INFO_REALIGN_3_PRIME	chr8	TogoVar
LY96_chr8_73986392_74034079	74002093	T T	TTCTTTCT others(27): Show TTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTC	intron_variant intron_variant	MODIFIER	NA18967.hp1 NA18967.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0020 a0001c0001t0001g0020	1	314	0.0032	34	c.113 others(51): Show c.113-2700_113-2699insTTCTTTCTTTCTTTCTTTCTTTCTTTCT TTCTCT	LY96	ENSG00000154589.7	transcript	ENST00000284818.7	protein_coding	1/4		INFO_REALIGN_3_PRIME	chr8	TogoVar
LYG1_chr2_99279238_99306197	99279427	T T	TTTCTTTT others(27): Show TTTCTTTTCTATTTCATTTATTTATTTATTTATTA	downstream_gene_variant downstream_gene_variant	MODIFIER	NA19084.hp1 NA19084.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0020 a0001c0001t0001g0020	1	354	0.0028	34	c.49 others(45): Show c.4965_*4966insTAATAAATAAATAAATAAATGAAATAGAAAAGAA	LYG1	ENSG00000144214.10	transcript	ENST00000308528.9	protein_coding		4810		chr2	TogoVar
LYG1_chr2_99279238_99306197	99279427	T T	TTTCTTTT others(27): Show TTTCTTTTCTATTTTATTTATTTATTTATTTATTA	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00408.hp1 HG00423.hp2 HG00544.hp1 others(119): Show HG00408.hp1 HG00423.hp2 HG00544.hp1 HG00621.hp1 HG00621.hp2 HG00639.hp2 HG00673.hp1 HG00673.hp2 HG00738.hp1 HG01070.hp1 HG01071.hp1 HG01074.hp1 HG01074.hp2 HG01099.hp1 HG01123.hp2 HG01175.hp1 HG01192.hp2 HG01255.hp2 HG01256.hp2 HG01258.hp2 HG01261.hp2 HG01346.hp2 HG01358.hp2 HG01517.hp1 HG01517.hp2 HG01884.hp1 HG01934.hp2 HG01975.hp1 HG01978.hp2 HG01981.hp2 HG02027.hp1 HG02040.hp2 HG02056.hp1 HG02056.hp2 HG02083.hp1 HG02109.hp1 HG02135.hp2 HG02145.hp2 HG02155.hp1 HG02155.hp2 HG02165.hp2 HG02258.hp1 HG02273.hp1 HG02486.hp2 HG02572.hp2 HG02647.hp1 HG02698.hp2 HG02717.hp1 HG02735.hp1 HG02738.hp2 HG02886.hp1 HG02965.hp1 HG02976.hp1 HG03017.hp1 HG03486.hp1 HG03490.hp1 HG03491.hp2 HG03516.hp2 HG03688.hp1 HG03710.hp1 HG03927.hp2 HG04115.hp1 HG04199.hp1 HG04228.hp1 HG04228.hp2 HG06807.hp2 NA18612.hp1 NA18939.hp2 NA18940.hp2 NA18942.hp1 NA18947.hp2 NA18948.hp1 NA18949.hp1 NA18950.hp1 NA18951.hp1 NA18952.hp1 NA18956.hp2 NA18957.hp2 NA18962.hp1 NA18964.hp1 NA18966.hp2 NA18970.hp1 NA18970.hp2 NA18971.hp1 NA18973.hp1 NA18973.hp2 NA18978.hp2 NA18979.hp2 NA18983.hp2 NA18987.hp2 NA18988.hp1 NA18990.hp2 NA18992.hp2 NA18993.hp2 NA18995.hp2 NA18997.hp1 NA18997.hp2 NA18998.hp2 NA19000.hp1 NA19000.hp2 NA19002.hp1 NA19005.hp2 NA19007.hp1 NA19007.hp2 NA19010.hp1 NA19058.hp2 NA19064.hp1 NA19066.hp1 NA19072.hp1 NA19074.hp1 NA19074.hp2 NA19079.hp1 NA19079.hp2 NA19080.hp1 NA19083.hp1 NA19086.hp2 NA19088.hp2 NA19089.hp2 NA19090.hp2 NA19091.hp2 NA19240.hp2 NA20129.hp2	a0001 a0001	a0001c0001 a0001c0003 a0001c0001 a0001c0003	a0001c0001t0001 a0001c0003t0001 a0001c0001t0001 a0001c0003t0001	a0001c0001t0001g0002 a0001c0001t0001g0006 a0001c0001t0001g0010 others(48): Show a0001c0001t0001g0002 a0001c0001t0001g0006 a0001c0001t0001g0010 a0001c0001t0001g0012 a0001c0001t0001g0013 a0001c0001t0001g0017 a0001c0001t0001g0023 a0001c0001t0001g0024 a0001c0001t0001g0026 a0001c0001t0001g0032 a0001c0001t0001g0033 a0001c0001t0001g0034 a0001c0001t0001g0035 a0001c0001t0001g0036 a0001c0001t0001g0038 a0001c0001t0001g0043 a0001c0001t0001g0044 a0001c0001t0001g0045 a0001c0001t0001g0046 a0001c0001t0001g0076 a0001c0001t0001g0077 a0001c0001t0001g0078 a0001c0001t0001g0079 a0001c0001t0001g0081 a0001c0001t0001g0082 a0001c0001t0001g0091 a0001c0001t0001g0106 a0001c0001t0001g0107 a0001c0001t0001g0108 a0001c0001t0001g0110 a0001c0001t0001g0111 a0001c0001t0001g0112 a0001c0001t0001g0113 a0001c0001t0001g0114 a0001c0001t0001g0115 a0001c0001t0001g0116 a0001c0001t0001g0117 a0001c0001t0001g0118 a0001c0001t0001g0119 a0001c0001t0001g0120 a0001c0001t0001g0121 a0001c0001t0001g0122 a0001c0001t0001g0123 a0001c0001t0001g0124 a0001c0001t0001g0125 a0001c0001t0001g0126 a0001c0001t0001g0127 a0001c0001t0001g0128 a0001c0001t0001g0133 a0001c0001t0001g0137 a0001c0003t0001g0109	122	354	0.3446	34	c.49 others(45): Show c.4965_*4966insTAATAAATAAATAAATAAATAAAATAGAAAAGAA	LYG1	ENSG00000144214.10	transcript	ENST00000308528.9	protein_coding		4810		chr2	TogoVar
LYN_chr8_55874835_56019169	55887575	T T	TATATACA others(27): Show TATATACACACACACACACACACACACACACACAC	intron_variant intron_variant	MODIFIER	HG02258.hp2 NA18982.hp2 HG02258.hp2 NA18982.hp2	a0001 a0001	a0001c0001 a0001c0003 a0001c0001 a0001c0003	a0001c0001t0002 a0001c0003t0005 a0001c0001t0002 a0001c0003t0005	a0001c0001t0002g0169 a0001c0003t0005g0063 a0001c0001t0002g0169 a0001c0003t0005g0063	2	288	0.0069	34	c.-6+ others(49): Show c.-6+7473_-6+7474insTATACACACACACACACACACACACACACA CACA	LYN	ENSG00000254087.8	transcript	ENST00000519728.6	protein_coding	1/12		INFO_REALIGN_3_PRIME	chr8	TogoVar
LYN_chr8_55874835_56019169	55887575	T T	TATATATA others(27): Show TATATATACACACACACACACACACACACACACAC	intron_variant intron_variant	MODIFIER	HG01167.hp2 NA18957.hp2 NA18966.hp1 others(4): Show HG01167.hp2 NA18957.hp2 NA18966.hp1 NA18972.hp2 NA18999.hp1 NA19004.hp2 NA19087.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0004 a0001c0001t0009 a0001c0001t0001 a0001c0001t0004 a0001c0001t0009	a0001c0001t0001g0003 a0001c0001t0001g0030 a0001c0001t0001g0031 others(4): Show a0001c0001t0001g0003 a0001c0001t0001g0030 a0001c0001t0001g0031 a0001c0001t0001g0074 a0001c0001t0004g0236 a0001c0001t0009g0032 a0001c0001t0009g0033	7	288	0.0243	34	c.-6+ others(49): Show c.-6+7473_-6+7474insTATATACACACACACACACACACACACACA CACA	LYN	ENSG00000254087.8	transcript	ENST00000519728.6	protein_coding	1/12		INFO_REALIGN_3_PRIME	chr8	TogoVar
LYN_chr8_55874835_56019169	55911255	G G	GTGTGTGT others(27): Show GTGTGTGTATATATATATATATACGTGTGTGTATA	intron_variant intron_variant	MODIFIER	HG02523.hp2 NA18984.hp2 HG02523.hp2 NA18984.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0013 a0001c0001t0001 a0001c0001t0013	a0001c0001t0001g0027 a0001c0001t0013g0119 a0001c0001t0001g0027 a0001c0001t0013g0119	2	288	0.0069	34	c.-5- others(51): Show c.-5-30597_-5-30596insGTGTATATATATATATATACGTGTGTGT ATATGT	LYN	ENSG00000254087.8	transcript	ENST00000519728.6	protein_coding	1/12		INFO_REALIGN_3_PRIME	chr8	TogoVar
LYN_chr8_55874835_56019169	55911257	G G	GTGTGTAT others(27): Show GTGTGTATATATATATATATATACGTGTGTGTATA	intron_variant intron_variant	MODIFIER	HG04115.hp1 HG04115.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0045 a0001c0001t0001g0045	1	288	0.0035	34	c.-5- others(51): Show c.-5-30597_-5-30596insGTGTATATATATATATATATACGTGTGT GTATAT	LYN	ENSG00000254087.8	transcript	ENST00000519728.6	protein_coding	1/12		INFO_REALIGN_3_PRIME	chr8	TogoVar
LYPD8_chr1_248734415_248760759	248742390	G G	GGGGAGAT others(27): Show GGGGAGATTATGCTCTGGTGGGGATGTTGGCAGCC	intron_variant intron_variant	MODIFIER	HG02630.hp2 HG02630.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0005 a0001c0001t0005	a0001c0001t0005g0079 a0001c0001t0005g0079	1	374	0.0027	34	c.476 others(51): Show c.476-2542_476-2541insGGCTGCCAACATCCCCACCAGAGCATAA TCTCCC	LYPD8	ENSG00000259823.6	transcript	ENST00000590317.4	protein_coding	6/6			chr1	TogoVar
LYPD8_chr1_248734415_248760759	248747069	C C	CCAGCACC others(27): Show CCAGCACCCACCCAGGGCATCGCCCGCACGGCCAG	intron_variant intron_variant	MODIFIER	HG02257.hp1 HG02257.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0139 a0001c0001t0001g0139	1	374	0.0027	34	c.337 others(51): Show c.337+1186_337+1219dupCTGGCCGTGCGGGCGATGCCCTGGGTGG GTGCTG	LYPD8	ENSG00000259823.6	transcript	ENST00000590317.4	protein_coding	5/6			chr1	TogoVar
LYPD8_chr1_248734415_248760759	248747348	C C	CCAGCACC others(27): Show CCAGCACCCACCCAGGGCATCGCCCGCACGGCCAG	intron_variant intron_variant	MODIFIER	NA19011.hp1 NA19011.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0042 a0001c0001t0001g0042	1	374	0.0027	34	c.337 others(49): Show c.337+940_337+941insCTGGCCGTGCGGGCGATGCCCTGGGTGGGT GCTG	LYPD8	ENSG00000259823.6	transcript	ENST00000590317.4	protein_coding	5/6			chr1	TogoVar
LYPD8_chr1_248734415_248760759	248747968	C C	CCAGCACC others(27): Show CCAGCACCCACCCAGGGCATCGCCCGCACGGCCAG	intron_variant intron_variant	MODIFIER	HG02257.hp1 HG02257.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0139 a0001c0001t0001g0139	1	374	0.0027	34	c.337 others(49): Show c.337+320_337+321insCTGGCCGTGCGGGCGATGCCCTGGGTGGGT GCTG	LYPD8	ENSG00000259823.6	transcript	ENST00000590317.4	protein_coding	5/6			chr1	TogoVar
LYPLA1_chr8_54041367_54106947	54084133	A A	AAAAAAAA others(27): Show AAAAAAAAAAAAAAAAAAAAAAAAAAAATATATAT	intron_variant intron_variant	MODIFIER	HG02965.hp1 HG02965.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0015 a0001c0001t0002g0015	1	306	0.0033	34	c.101 others(53): Show c.101+16774_101+16775insATATATATTTTTTTTTTTTTTTTTTT TTTTTTTT	LYPLA1	ENSG00000120992.18	transcript	ENST00000316963.8	protein_coding	2/8			chr8	TogoVar
LYPLA1_chr8_54041367_54106947	54084133	A A	AAAATATA others(27): Show AAAATATATATATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG01109.hp2 HG01109.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0152 a0001c0001t0002g0152	1	306	0.0033	34	c.101 others(53): Show c.101+16774_101+16775insATATATATATATATATATATATATAT ATATATTT	LYPLA1	ENSG00000120992.18	transcript	ENST00000316963.8	protein_coding	2/8			chr8	TogoVar
LYRM1_chr16_20895771_20930006	20927049	C C	CATATATA others(27): Show CATATATATATATATATATATATATATATATATAT	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00639.hp1 HG00735.hp1 HG01074.hp1 others(9): Show HG00639.hp1 HG00735.hp1 HG01074.hp1 HG01516.hp1 HG02004.hp2 HG02132.hp2 HG03017.hp2 HG03688.hp1 HG03710.hp2 NA18977.hp2 NA18989.hp1 NA19055.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0003 a0001c0001t0001g0004 a0001c0001t0001g0008 others(5): Show a0001c0001t0001g0003 a0001c0001t0001g0004 a0001c0001t0001g0008 a0001c0001t0001g0017 a0001c0001t0001g0117 a0001c0001t0001g0118 a0001c0001t0001g0119 a0001c0001t0001g0141	12	382	0.0314	34	c.29 others(45): Show c.2933_*2934insATATATATATATATATATATATATATATATATAT	LYRM1	ENSG00000102897.10	transcript	ENST00000567954.6	protein_coding		2044		chr16	TogoVar

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