Joint Open Genome and Omics Platform (JoGo)

Search by Variant

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Chr

Chromosome name (e.g., chr11).

Snpeff genename

Exact SnpEff gene name.

Sampleids

Target sampleid (e.g. HG02615).

Snpeff haplotype class

Haplotype-annotation class (e.g., ahapid, ahapid+chapid).

Snpeff annotation impact

Exact impact level (e.g., HIGH, MODERATE, LOW).

Snpeff annotation impact detail

Keyword match in SnpEff annotation.

Hapid

One or more haplotype IDs (comma-separated; e.g., a0001, a01, a0001c0001, a01c02, a1c2, a0001c0001t0005, a0001c0001t0005g0018).

Samplehapid

Sample haplotype IDs to include (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

No_hapid

Haplotype IDs to exclude (comma-separated; e.g., a0001, a0002, a0001c0001, a0001c0001t0005, a1, a01).

No_samplehapid

Sample haplotype IDs to exclude (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

Start

Start position (GRCh38).

End

End position (GRCh38).

Minac

Minimum alternate allele count (≥).

Maxac

Maximum alternate allele count (≤).

Minlen

Minimum variant length (≥).

Maxlen

Maximum variant length (≤).

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regionname	pos	ref	alt	annotation	impact	samples	ahapids	achapids	acthapids	actghapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	external
PBX3_chr9_125742373_125972377	125899274	C C	CATATATG others(27): Show CATATATGTATATATTTTTATATAAATATATACAT	intron_variant intron_variant	MODIFIER	HG02647.hp1 HG03209.hp1 HG02647.hp1 HG03209.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0132 a0001c0001t0001g0133 a0001c0001t0001g0132 a0001c0001t0001g0133	2	294	0.0068	34	c.275 others(53): Show c.275-16408_275-16407insATGTATATATTTTTATATAAATATAT ACATATAT	PBX3	ENSG00000167081.18	transcript	ENST00000373489.10	protein_coding	2/8		INFO_REALIGN_3_PRIME	chr9	TogoVar
PCBP3_chr21_45638725_45947450	45944093	C C	CCCAGGTG others(27): Show CCCAGGTGAGGAACACTTCAGGTGGGGGGAGCACT	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01243.hp1 HG03471.hp1 HG01243.hp1 HG03471.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0015 a0001c0001t0003 a0001c0001t0015	a0001c0001t0003g0035 a0001c0001t0015g0003 a0001c0001t0003g0035 a0001c0001t0015g0003	2	292	0.0069	34	c.23 others(45): Show c.2387_*2388insCCAGGTGAGGAACACTTCAGGTGGGGGGAGCACT	PCBP3	ENSG00000183570.17	transcript	ENST00000681687.1	protein_coding		1644		chr21	TogoVar
PCCA_chr13_100084093_100535435	100341957	G G	GTATATAT others(27): Show GTATATATATATATATATATATATATATATATATA	intron_variant intron_variant	MODIFIER	HG02258.hp2 HG02258.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0148 a0001c0001t0001g0148	1	174	0.0058	34	c.164 others(53): Show c.1643+1723_1643+1724insATATATATATATATATATATATATAT ATATATAT	PCCA	ENSG00000175198.17	transcript	ENST00000376285.6	protein_coding	18/23		INFO_REALIGN_3_PRIME	chr13	TogoVar
PCCB_chr3_136245340_136335169	136264440	G G	GTGTATAT others(27): Show GTGTATATATATATATATATATATATATATATATA	intron_variant intron_variant	MODIFIER	HG03017.hp2 HG03017.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0151 a0001c0001t0001g0151	1	300	0.0033	34	c.543 others(51): Show c.543+2376_543+2377insGTATATATATATATATATATATATATAT ATATAT	PCCB	ENSG00000114054.14	transcript	ENST00000251654.9	protein_coding	5/14		INFO_REALIGN_3_PRIME	chr3	TogoVar
PCDH11X_chrX_91774375_92628230	91945048	C C	CATATATA others(27): Show CATATATATATATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	NA19083.hp1 NA19083.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0007 a0001c0001t0007	a0001c0001t0007g0037 a0001c0001t0007g0037	1	154	0.0065	34	c.303 others(55): Show c.3033+65795_3033+65796insATATATATATATATATATATATAT ATATATATAT	PCDH11X	ENSG00000102290.23	transcript	ENST00000682573.1	protein_coding	6/10		INFO_REALIGN_3_PRIME	chrX	TogoVar
PCDH11X_chrX_91774375_92628230	92132623	A A	ATATATAT others(27): Show ATATATATATATGTATATATATATATATATATATG	intron_variant intron_variant	MODIFIER	HG01358.hp1 NA18977.hp1 HG01358.hp1 NA18977.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0030 a0001c0001t0004 a0001c0001t0030	a0001c0001t0004g0146 a0001c0001t0030g0070 a0001c0001t0004g0146 a0001c0001t0030g0070	2	154	0.0130	34	c.303 others(55): Show c.3034-68734_3034-68701dupATATATATATATATATGTATATAT ATATGTATAT	PCDH11X	ENSG00000102290.23	transcript	ENST00000682573.1	protein_coding	6/10		INFO_REALIGN_3_PRIME	chrX	TogoVar
PCDH11X_chrX_91774375_92628230	92147837	T T	TTCTTTCT others(27): Show TTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTC	intron_variant intron_variant	MODIFIER	HG02976.hp2 HG02976.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0021 a0001c0002t0021	a0001c0002t0021g0006 a0001c0002t0021g0006	1	154	0.0065	34	c.303 others(55): Show c.3034-53521_3034-53520insCTTTCTTTCTTTCTTTCTCTTTCT TTCTTTCTTT	PCDH11X	ENSG00000102290.23	transcript	ENST00000682573.1	protein_coding	6/10		INFO_REALIGN_3_PRIME	chrX	TogoVar
PCDH11X_chrX_91774375_92628230	92326639	T T	TATATATA others(27): Show TATATATATATATATATATAGAGAGAGAGAGAGAG	intron_variant intron_variant	MODIFIER	HG03540.hp2 NA18968.hp1 NA19043.hp1 HG03540.hp2 NA18968.hp1 NA19043.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0002c0004 a0001c0001 a0002c0004	a0001c0001t0007 a0001c0001t0025 a0002c0004t0009 a0001c0001t0007 a0001c0001t0025 a0002c0004t0009	a0001c0001t0007g0017 a0001c0001t0025g0059 a0002c0004t0009g0040 a0001c0001t0007g0017 a0001c0001t0025g0059 a0002c0004t0009g0040	3	154	0.0195	34	c.314 others(55): Show c.3145-61095_3145-61094insTATATATATATATATATAGAGAGA GAGAGAGAGA	PCDH11X	ENSG00000102290.23	transcript	ENST00000682573.1	protein_coding	8/10		INFO_REALIGN_3_PRIME	chrX	TogoVar
PCDH11X_chrX_91774375_92628230	92326639	T T	TATATATA others(27): Show TATATATATATATATATATATATAGAGAGAGAGAG	intron_variant intron_variant	MODIFIER	HG02486.hp1 HG02486.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0005 a0001c0002t0005	a0001c0002t0005g0009 a0001c0002t0005g0009	1	154	0.0065	34	c.314 others(55): Show c.3145-61095_3145-61094insTATATATATATATATATATATAGA GAGAGAGAGA	PCDH11X	ENSG00000102290.23	transcript	ENST00000682573.1	protein_coding	8/10		INFO_REALIGN_3_PRIME	chrX	TogoVar
PCDH15_chr10_53797771_54806231	53855899	G G	GATGTGTA others(27): Show GATGTGTATATATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG03540.hp2 HG03540.hp2	a0030 a0030	a0030c0036 a0030c0036	a0030c0036t0004 a0030c0036t0004	a0030c0036t0004g0061 a0030c0036t0004g0061	1	102	0.0098	34	c.380 others(53): Show c.3806+1275_3806+1276insATATATATATATATATATATATATAT ATACACAT	PCDH15	ENSG00000150275.20	transcript	ENST00000644397.2	protein_coding	28/37			chr10	TogoVar
PCDH15_chr10_53797771_54806231	53855904	G G	GTATATAT others(27): Show GTATATATATATATATATATATATATATATATATA	intron_variant intron_variant	MODIFIER	HG01243.hp2 HG01981.hp1 HG03225.hp1 others(1): Show HG01243.hp2 HG01981.hp1 HG03225.hp1 NA19088.hp1	a0001 a0003 a0009 a0001 a0003 a0009	a0001c0001 a0003c0003 a0009c0008 a0001c0001 a0003c0003 a0009c0008	a0001c0001t0001 a0003c0003t0006 a0009c0008t0002 a0001c0001t0001 a0003c0003t0006 a0009c0008t0002	a0001c0001t0001g0089 a0001c0001t0001g0090 a0003c0003t0006g0051 others(1): Show a0001c0001t0001g0089 a0001c0001t0001g0090 a0003c0003t0006g0051 a0009c0008t0002g0049	4	102	0.0392	34	c.380 others(53): Show c.3806+1270_3806+1271insTATATATATATATATATATATATATA TATATATA	PCDH15	ENSG00000150275.20	transcript	ENST00000644397.2	protein_coding	28/37			chr10	TogoVar
PCDH15_chr10_53797771_54806231	54655256	A A	AAGAGAGA others(27): Show AAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG	intron_variant intron_variant	MODIFIER	HG01934.hp1 HG01934.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0043 a0001c0001t0001g0043	1	102	0.0098	34	c.91+ others(49): Show c.91+8882_91+8915dupCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT CTCT	PCDH15	ENSG00000150275.20	transcript	ENST00000644397.2	protein_coding	2/37			chr10	TogoVar
PCDH15_chr10_53797771_54806231	54804927	T T	TTATATAT others(27): Show TTATATATATATATATATATATATATATATATATA	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01069.hp2 HG01069.hp2	a0029 a0029	a0029c0035 a0029c0035	a0029c0035t0005 a0029c0035t0005	a0029c0035t0005g0100 a0029c0035t0005g0100	1	102	0.0098	34	c.-40 others(45): Show c.-4032_-4031insTATATATATATATATATATATATATATATATATA	PCDH15	ENSG00000150275.20	transcript	ENST00000644397.2	protein_coding		3697		chr10	TogoVar
PCDH15_chr10_53816099_54806231	53855899	G G	GATGTGTA others(27): Show GATGTGTATATATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG03540.hp2 HG03540.hp2	a0025 a0025	a0025c0041 a0025c0041	a0025c0041t0002 a0025c0041t0002	a0025c0041t0002g0057 a0025c0041t0002g0057	1	94	0.0106	34	c.380 others(53): Show c.3806+1275_3806+1276insATATATATATATATATATATATATAT ATACACAT	PCDH15	ENSG00000150275.20	transcript	ENST00000320301.11	protein_coding	28/32			chr10	TogoVar
PCDH15_chr10_53816099_54806231	53855904	G G	GTATATAT others(27): Show GTATATATATATATATATATATATATATATATATA	intron_variant intron_variant	MODIFIER	HG01243.hp1 HG01981.hp1 HG03225.hp1 others(1): Show HG01243.hp1 HG01981.hp1 HG03225.hp1 NA19088.hp1	a0001 a0003 a0007 a0001 a0003 a0007	a0001c0001 a0003c0024 a0007c0018 a0001c0001 a0003c0024 a0007c0018	a0001c0001t0001 a0003c0024t0001 a0007c0018t0001 a0001c0001t0001 a0003c0024t0001 a0007c0018t0001	a0001c0001t0001g0081 a0001c0001t0001g0082 a0003c0024t0001g0049 others(1): Show a0001c0001t0001g0081 a0001c0001t0001g0082 a0003c0024t0001g0049 a0007c0018t0001g0046	4	94	0.0426	34	c.380 others(53): Show c.3806+1270_3806+1271insTATATATATATATATATATATATATA TATATATA	PCDH15	ENSG00000150275.20	transcript	ENST00000320301.11	protein_coding	28/32			chr10	TogoVar
PCDH15_chr10_53816099_54806231	54655256	A A	AAGAGAGA others(27): Show AAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG	intron_variant intron_variant	MODIFIER	HG01934.hp1 HG01934.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0040 a0001c0001t0001g0040	1	94	0.0106	34	c.91+ others(49): Show c.91+8882_91+8915dupCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT CTCT	PCDH15	ENSG00000150275.20	transcript	ENST00000320301.11	protein_coding	2/32			chr10	TogoVar
PCDH15_chr10_53816099_54806231	54804927	T T	TTATATAT others(27): Show TTATATATATATATATATATATATATATATATATA	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01069.hp1 HG01069.hp1	a0024 a0024	a0024c0040 a0024c0040	a0024c0040t0001 a0024c0040t0001	a0024c0040t0001g0092 a0024c0040t0001g0092	1	94	0.0106	34	c.-40 others(45): Show c.-4032_-4031insTATATATATATATATATATATATATATATATATA	PCDH15	ENSG00000150275.20	transcript	ENST00000320301.11	protein_coding		3697		chr10	TogoVar
PCDH18_chr4_137513918_137537494	137517489	A A	ATTTATTT others(27): Show ATTTATTTTTTTTATTTTATTTTATTTTATTTTAT	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02976.hp2 HG03516.hp2 HG02976.hp2 HG03516.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0054 a0001c0001t0003g0056 a0001c0001t0003g0054 a0001c0001t0003g0056	2	406	0.0049	34	c.35 others(45): Show c.3539_*3540insATAAAATAAAATAAAATAAAATAAAAAAAATAAA	PCDH18	ENSG00000189184.12	transcript	ENST00000344876.9	protein_coding		1428		chr4	TogoVar
PCDH19_chrX_100286644_100415273	100322865	A A	ATATATAT others(27): Show ATATATATATATATATATATATATATTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG02257.hp1 HG02257.hp1	a0001 a0001	a0001c0006 a0001c0006	a0001c0006t0009 a0001c0006t0009	a0001c0006t0009g0024 a0001c0006t0009g0024	1	281	0.0036	34	c.284 others(55): Show c.2848+19037_2848+19038insAAAAAAAAAATATATATATATATA TATATATATA	PCDH19	ENSG00000165194.15	transcript	ENST00000373034.8	protein_coding	5/5			chrX	TogoVar
PCDH19_chrX_100286644_100415273	100322865	A A	ATATATAT others(27): Show ATATATATATATATATATATTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG01070.hp2 HG01070.hp2	a0001 a0001	a0001c0004 a0001c0004	a0001c0004t0002 a0001c0004t0002	a0001c0004t0002g0143 a0001c0004t0002g0143	1	281	0.0036	34	c.284 others(55): Show c.2848+19037_2848+19038insAAAAAAAAAAAAAAAATATATATA TATATATATA	PCDH19	ENSG00000165194.15	transcript	ENST00000373034.8	protein_coding	5/5			chrX	TogoVar
PCDH7_chr4_30715369_31151800	30960173	G G	GGGAGGGA others(27): Show GGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGA	intron_variant intron_variant	MODIFIER	NA18982.hp2 NA18982.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0004 a0001c0002t0004	a0001c0002t0004g0162 a0001c0002t0004g0162	1	214	0.0047	34	c.339 others(55): Show c.3391+39805_3391+39806insGAGGGAGGGAGGGAGGGAGGGAGG GAGGGAGGAG	PCDH7	ENSG00000169851.16	transcript	ENST00000695919.1	protein_coding	2/2		INFO_REALIGN_3_PRIME	chr4	TogoVar
PCDH7_chr4_30715369_31151800	31150365	A A	ATTTTTCT others(27): Show ATTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTT	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02630.hp1 HG03195.hp2 HG03453.hp2 HG02630.hp1 HG03195.hp2 HG03453.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0019 a0001c0001t0001 a0001c0001t0019	a0001c0001t0001g0011 a0001c0001t0001g0119 a0001c0001t0019g0178 a0001c0001t0001g0011 a0001c0001t0001g0119 a0001c0001t0019g0178	3	214	0.0140	34	c.75 others(45): Show c.7516_*7517insTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTT	PCDH7	ENSG00000169851.16	transcript	ENST00000695919.1	protein_coding		3566		chr4	TogoVar
PCDHA10_chr5_140850897_141017347	140946631	T T	TATATATA others(27): Show TATATATATATATATATATATATATATATATATAC	intron_variant intron_variant	MODIFIER	HG01496.hp1 HG03225.hp2 NA18906.hp1 others(1): Show HG01496.hp1 HG03225.hp2 NA18906.hp1 NA19240.hp1	a0001 a0001	a0001c0001 a0001c0009 a0001c0001 a0001c0009	a0001c0001t0001 a0001c0001t0006 a0001c0009t0001 a0001c0001t0001 a0001c0001t0006 a0001c0009t0001	a0001c0001t0001g0218 a0001c0001t0006g0220 a0001c0009t0001g0222 others(1): Show a0001c0001t0001g0218 a0001c0001t0006g0220 a0001c0009t0001g0222 a0001c0009t0001g0224	4	260	0.0154	34	c.238 others(55): Show c.2389-32317_2389-32316insTATATATATATATATATATATATA TATATATACA	PCDHA10	ENSG00000250120.8	transcript	ENST00000307360.6	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA11_chr5_140863957_141017347	140946631	T T	TATATATA others(27): Show TATATATATATATATATATATATATATATATACAC	intron_variant intron_variant	MODIFIER	HG02896.hp2 HG02896.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0257 a0001c0001t0001g0257	1	260	0.0039	34	c.239 others(55): Show c.2392-32317_2392-32316insTATATATATATATATATATATATA TATATACACA	PCDHA11	ENSG00000249158.7	transcript	ENST00000398640.7	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA11_chr5_140863957_141017347	140946631	T T	TATATATA others(27): Show TATATATATATATATATATATATATATATATATAC	intron_variant intron_variant	MODIFIER	HG01496.hp1 HG03225.hp2 NA18906.hp1 others(1): Show HG01496.hp1 HG03225.hp2 NA18906.hp1 NA19240.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0006 a0001c0001t0001 a0001c0001t0006	a0001c0001t0001g0089 a0001c0001t0001g0130 a0001c0001t0001g0132 others(1): Show a0001c0001t0001g0089 a0001c0001t0001g0130 a0001c0001t0001g0132 a0001c0001t0006g0091	4	260	0.0154	34	c.239 others(55): Show c.2392-32317_2392-32316insTATATATATATATATATATATATA TATATATACA	PCDHA11	ENSG00000249158.7	transcript	ENST00000398640.7	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA12_chr5_140870308_141017347	140946631	T T	TATATATA others(27): Show TATATATATATATATATATATATATATATATACAC	intron_variant intron_variant	MODIFIER	HG02896.hp2 HG02896.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0032 a0001c0001t0001g0032	1	260	0.0039	34	c.236 others(55): Show c.2368-32317_2368-32316insTATATATATATATATATATATATA TATATACACA	PCDHA12	ENSG00000251664.5	transcript	ENST00000398631.3	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA12_chr5_140870308_141017347	140946631	T T	TATATATA others(27): Show TATATATATATATATATATATATATATATATATAC	intron_variant intron_variant	MODIFIER	HG01496.hp1 HG03225.hp1 NA18906.hp1 others(1): Show HG01496.hp1 HG03225.hp1 NA18906.hp1 NA19240.hp1	a0001 a0003 a0001 a0003	a0001c0001 a0003c0006 a0001c0001 a0003c0006	a0001c0001t0001 a0003c0006t0001 a0003c0006t0006 a0001c0001t0001 a0003c0006t0001 a0003c0006t0006	a0001c0001t0001g0092 a0001c0001t0001g0094 a0003c0006t0001g0086 others(1): Show a0001c0001t0001g0092 a0001c0001t0001g0094 a0003c0006t0001g0086 a0003c0006t0006g0089	4	260	0.0154	34	c.236 others(55): Show c.2368-32317_2368-32316insTATATATATATATATATATATATA TATATATACA	PCDHA12	ENSG00000251664.5	transcript	ENST00000398631.3	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA13_chr5_140877124_141017347	140946631	T T	TATATATA others(27): Show TATATATATATATATATATATATATATATATACAC	intron_variant intron_variant	MODIFIER	HG02809.hp1 HG02896.hp2 HG02809.hp1 HG02896.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0003 a0001c0002t0001 a0001c0002t0003	a0001c0002t0001g0030 a0001c0002t0003g0027 a0001c0002t0001g0030 a0001c0002t0003g0027	2	260	0.0077	34	c.239 others(55): Show c.2395-32317_2395-32316insTATATATATATATATATATATATA TATATACACA	PCDHA13	ENSG00000239389.8	transcript	ENST00000289272.3	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA13_chr5_140877124_141017347	140946631	T T	TATATATA others(27): Show TATATATATATATATATATATATATATATATATAC	intron_variant intron_variant	MODIFIER	HG01496.hp2 HG03225.hp1 NA18906.hp1 others(1): Show HG01496.hp2 HG03225.hp1 NA18906.hp1 NA19240.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0007 a0001c0002t0001 a0001c0002t0007	a0001c0002t0001g0096 a0001c0002t0001g0103 a0001c0002t0001g0105 others(1): Show a0001c0002t0001g0096 a0001c0002t0001g0103 a0001c0002t0001g0105 a0001c0002t0007g0098	4	260	0.0154	34	c.239 others(55): Show c.2395-32317_2395-32316insTATATATATATATATATATATATA TATATATACA	PCDHA13	ENSG00000239389.8	transcript	ENST00000289272.3	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA1_chr5_140781140_141017347	140946631	T T	TATATATA others(27): Show TATATATATATATATATATATATATATATATACAC	intron_variant intron_variant	MODIFIER	HG02809.hp2 HG02896.hp1 HG02809.hp2 HG02896.hp1	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0001 a0002c0002t0003 a0002c0002t0001 a0002c0002t0003	a0002c0002t0001g0184 a0002c0002t0003g0186 a0002c0002t0001g0184 a0002c0002t0003g0186	2	200	0.0100	34	c.239 others(55): Show c.2395-32317_2395-32316insTATATATATATATATATATATATA TATATACACA	PCDHA1	ENSG00000204970.10	transcript	ENST00000504120.4	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA1_chr5_140781140_141017347	140946631	T T	TATATATA others(27): Show TATATATATATATATATATATATATATATATATAC	intron_variant intron_variant	MODIFIER	HG01496.hp1 HG03225.hp2 NA18906.hp2 others(1): Show HG01496.hp1 HG03225.hp2 NA18906.hp2 NA19240.hp2	a0002 a0004 a0002 a0004	a0002c0002 a0004c0004 a0002c0002 a0004c0004	a0002c0002t0001 a0002c0002t0005 a0004c0004t0001 a0002c0002t0001 a0002c0002t0005 a0004c0004t0001	a0002c0002t0001g0149 a0002c0002t0005g0200 a0004c0004t0001g0097 others(1): Show a0002c0002t0001g0149 a0002c0002t0005g0200 a0004c0004t0001g0097 a0004c0004t0001g0098	4	200	0.0200	34	c.239 others(55): Show c.2395-32317_2395-32316insTATATATATATATATATATATATA TATATATACA	PCDHA1	ENSG00000204970.10	transcript	ENST00000504120.4	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA2_chr5_140789852_141017347	140946631	T T	TATATATA others(27): Show TATATATATATATATATATATATATATATATACAC	intron_variant intron_variant	MODIFIER	HG02809.hp1 HG02896.hp2 HG02809.hp1 HG02896.hp2	a0003 a0003	a0003c0004 a0003c0004	a0003c0004t0001 a0003c0004t0003 a0003c0004t0001 a0003c0004t0003	a0003c0004t0001g0083 a0003c0004t0003g0082 a0003c0004t0001g0083 a0003c0004t0003g0082	2	202	0.0099	34	c.238 others(55): Show c.2389-32317_2389-32316insTATATATATATATATATATATATA TATATACACA	PCDHA2	ENSG00000204969.7	transcript	ENST00000526136.2	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA2_chr5_140789852_141017347	140946631	T T	TATATATA others(27): Show TATATATATATATATATATATATATATATATATAC	intron_variant intron_variant	MODIFIER	HG01496.hp1 HG03225.hp1 NA18906.hp2 others(1): Show HG01496.hp1 HG03225.hp1 NA18906.hp2 NA19240.hp1	a0001 a0002 a0003 others(1): Show a0001 a0002 a0003 a0013	a0001c0001 a0002c0002 a0003c0013 others(1): Show a0001c0001 a0002c0002 a0003c0013 a0013c0009	a0001c0001t0001 a0002c0002t0001 a0003c0013t0006 others(1): Show a0001c0001t0001 a0002c0002t0001 a0003c0013t0006 a0013c0009t0001	a0001c0001t0001g0001 a0002c0002t0001g0162 a0003c0013t0006g0069 others(1): Show a0001c0001t0001g0001 a0002c0002t0001g0162 a0003c0013t0006g0069 a0013c0009t0001g0003	4	202	0.0198	34	c.238 others(55): Show c.2389-32317_2389-32316insTATATATATATATATATATATATA TATATATACA	PCDHA2	ENSG00000204969.7	transcript	ENST00000526136.2	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA3_chr5_140796057_141017347	140946631	T T	TATATATA others(27): Show TATATATATATATATATATATATATATATATACAC	intron_variant intron_variant	MODIFIER	HG02809.hp2 HG02896.hp2 HG02809.hp2 HG02896.hp2	a0003 a0003	a0003c0004 a0003c0004	a0003c0004t0001 a0003c0004t0003 a0003c0004t0001 a0003c0004t0003	a0003c0004t0001g0108 a0003c0004t0003g0107 a0003c0004t0001g0108 a0003c0004t0003g0107	2	208	0.0096	34	c.239 others(55): Show c.2395-32317_2395-32316insTATATATATATATATATATATATA TATATACACA	PCDHA3	ENSG00000255408.4	transcript	ENST00000522353.3	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA3_chr5_140796057_141017347	140946631	T T	TATATATA others(27): Show TATATATATATATATATATATATATATATATATAC	intron_variant intron_variant	MODIFIER	HG01496.hp1 HG03225.hp1 NA18906.hp2 others(1): Show HG01496.hp1 HG03225.hp1 NA18906.hp2 NA19240.hp2	a0001 a0002 a0003 a0001 a0002 a0003	a0001c0001 a0002c0002 a0003c0005 a0001c0001 a0002c0002 a0003c0005	a0001c0001t0001 a0002c0002t0002 a0003c0005t0007 a0001c0001t0001 a0002c0002t0002 a0003c0005t0007	a0001c0001t0001g0097 a0001c0001t0001g0099 a0002c0002t0002g0161 others(1): Show a0001c0001t0001g0097 a0001c0001t0001g0099 a0002c0002t0002g0161 a0003c0005t0007g0195	4	208	0.0192	34	c.239 others(55): Show c.2395-32317_2395-32316insTATATATATATATATATATATATA TATATATACA	PCDHA3	ENSG00000255408.4	transcript	ENST00000522353.3	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA4_chr5_140802068_141017347	140946631	T T	TATATATA others(27): Show TATATATATATATATATATATATATATATATACAC	intron_variant intron_variant	MODIFIER	HG02809.hp1 HG02896.hp2 HG02809.hp1 HG02896.hp2	a0006 a0006	a0006c0006 a0006c0006	a0006c0006t0001 a0006c0006t0003 a0006c0006t0001 a0006c0006t0003	a0006c0006t0001g0210 a0006c0006t0003g0209 a0006c0006t0001g0210 a0006c0006t0003g0209	2	212	0.0094	34	c.238 others(55): Show c.2386-32317_2386-32316insTATATATATATATATATATATATA TATATACACA	PCDHA4	ENSG00000204967.13	transcript	ENST00000530339.2	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA4_chr5_140802068_141017347	140946631	T T	TATATATA others(27): Show TATATATATATATATATATATATATATATATATAC	intron_variant intron_variant	MODIFIER	HG01496.hp1 HG03225.hp2 NA18906.hp1 others(1): Show HG01496.hp1 HG03225.hp2 NA18906.hp1 NA19240.hp2	a0001 a0003 a0004 a0001 a0003 a0004	a0001c0001 a0003c0007 a0004c0004 a0001c0001 a0003c0007 a0004c0004	a0001c0001t0002 a0003c0007t0001 a0004c0004t0008 a0001c0001t0002 a0003c0007t0001 a0004c0004t0008	a0001c0001t0002g0168 a0003c0007t0001g0112 a0003c0007t0001g0114 others(1): Show a0001c0001t0002g0168 a0003c0007t0001g0112 a0003c0007t0001g0114 a0004c0004t0008g0096	4	212	0.0189	34	c.238 others(55): Show c.2386-32317_2386-32316insTATATATATATATATATATATATA TATATATACA	PCDHA4	ENSG00000204967.13	transcript	ENST00000530339.2	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA5_chr5_140816613_141017347	140946631	T T	TATATATA others(27): Show TATATATATATATATATATATATATATATATACAC	intron_variant intron_variant	MODIFIER	HG02809.hp1 HG02896.hp2 HG02809.hp1 HG02896.hp2	a0005 a0005	a0005c0005 a0005c0005	a0005c0005t0003 a0005c0005t0005 a0005c0005t0003 a0005c0005t0005	a0005c0005t0003g0171 a0005c0005t0005g0170 a0005c0005t0003g0171 a0005c0005t0005g0170	2	220	0.0091	34	c.235 others(55): Show c.2353-32317_2353-32316insTATATATATATATATATATATATA TATATACACA	PCDHA5	ENSG00000204965.9	transcript	ENST00000529859.2	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA5_chr5_140816613_141017347	140946631	T T	TATATATA others(27): Show TATATATATATATATATATATATATATATATATAC	intron_variant intron_variant	MODIFIER	HG01496.hp1 HG03225.hp1 NA18906.hp1 others(1): Show HG01496.hp1 HG03225.hp1 NA18906.hp1 NA19240.hp2	a0001 a0002 a0003 a0001 a0002 a0003	a0001c0007 a0002c0002 a0003c0003 a0001c0007 a0002c0002 a0003c0003	a0001c0007t0001 a0002c0002t0002 a0003c0003t0008 a0001c0007t0001 a0002c0002t0002 a0003c0003t0008	a0001c0007t0001g0002 a0001c0007t0001g0004 a0002c0002t0002g0075 others(1): Show a0001c0007t0001g0002 a0001c0007t0001g0004 a0002c0002t0002g0075 a0003c0003t0008g0113	4	220	0.0182	34	c.235 others(55): Show c.2353-32317_2353-32316insTATATATATATATATATATATATA TATATATACA	PCDHA5	ENSG00000204965.9	transcript	ENST00000529859.2	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA6_chr5_140822960_141017347	140946631	T T	TATATATA others(27): Show TATATATATATATATATATATATATATATATACAC	intron_variant intron_variant	MODIFIER	HG02809.hp2 HG02896.hp1 HG02809.hp2 HG02896.hp1	a0004 a0004	a0004c0005 a0004c0005	a0004c0005t0001 a0004c0005t0003 a0004c0005t0001 a0004c0005t0003	a0004c0005t0001g0128 a0004c0005t0003g0127 a0004c0005t0001g0128 a0004c0005t0003g0127	2	236	0.0085	34	c.239 others(55): Show c.2395-32317_2395-32316insTATATATATATATATATATATATA TATATACACA	PCDHA6	ENSG00000081842.18	transcript	ENST00000529310.6	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA6_chr5_140822960_141017347	140946631	T T	TATATATA others(27): Show TATATATATATATATATATATATATATATATATAC	intron_variant intron_variant	MODIFIER	HG01496.hp1 HG03225.hp2 NA18906.hp2 others(1): Show HG01496.hp1 HG03225.hp2 NA18906.hp2 NA19240.hp1	a0001 a0003 a0001 a0003	a0001c0002 a0001c0006 a0003c0004 a0001c0002 a0001c0006 a0003c0004	a0001c0002t0001 a0001c0006t0001 a0003c0004t0006 a0001c0002t0001 a0001c0006t0001 a0003c0004t0006	a0001c0002t0001g0206 a0001c0006t0001g0004 a0001c0006t0001g0006 others(1): Show a0001c0002t0001g0206 a0001c0006t0001g0004 a0001c0006t0001g0006 a0003c0004t0006g0140	4	236	0.0170	34	c.239 others(55): Show c.2395-32317_2395-32316insTATATATATATATATATATATATA TATATATACA	PCDHA6	ENSG00000081842.18	transcript	ENST00000529310.6	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA7_chr5_140829269_141017347	140946631	T T	TATATATA others(27): Show TATATATATATATATATATATATATATATATACAC	intron_variant intron_variant	MODIFIER	HG02809.hp2 HG02896.hp2 HG02809.hp2 HG02896.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0003 a0001c0002t0001 a0001c0002t0003	a0001c0002t0001g0136 a0001c0002t0003g0135 a0001c0002t0001g0136 a0001c0002t0003g0135	2	248	0.0081	34	c.235 others(55): Show c.2356-32317_2356-32316insTATATATATATATATATATATATA TATATACACA	PCDHA7	ENSG00000204963.6	transcript	ENST00000525929.2	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA7_chr5_140829269_141017347	140946631	T T	TATATATA others(27): Show TATATATATATATATATATATATATATATATATAC	intron_variant intron_variant	MODIFIER	HG01496.hp2 HG03225.hp1 NA18906.hp1 others(1): Show HG01496.hp2 HG03225.hp1 NA18906.hp1 NA19240.hp1	a0001 a0007 a0001 a0007	a0001c0002 a0001c0003 a0007c0009 a0001c0002 a0001c0003 a0007c0009	a0001c0002t0001 a0001c0003t0006 a0007c0009t0001 a0001c0002t0001 a0001c0003t0006 a0007c0009t0001	a0001c0002t0001g0221 a0001c0003t0006g0143 a0007c0009t0001g0002 others(1): Show a0001c0002t0001g0221 a0001c0003t0006g0143 a0007c0009t0001g0002 a0007c0009t0001g0004	4	248	0.0161	34	c.235 others(55): Show c.2356-32317_2356-32316insTATATATATATATATATATATATA TATATATACA	PCDHA7	ENSG00000204963.6	transcript	ENST00000525929.2	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA8_chr5_140836187_141017347	140946631	T T	TATATATA others(27): Show TATATATATATATATATATATATATATATATACAC	intron_variant intron_variant	MODIFIER	HG02809.hp2 HG02896.hp1 HG02809.hp2 HG02896.hp1	a0007 a0007	a0007c0007 a0007c0007	a0007c0007t0001 a0007c0007t0003 a0007c0007t0001 a0007c0007t0003	a0007c0007t0001g0135 a0007c0007t0003g0133 a0007c0007t0001g0135 a0007c0007t0003g0133	2	258	0.0078	34	c.239 others(55): Show c.2395-32317_2395-32316insTATATATATATATATATATATATA TATATACACA	PCDHA8	ENSG00000204962.6	transcript	ENST00000531613.2	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA8_chr5_140836187_141017347	140946631	T T	TATATATA others(27): Show TATATATATATATATATATATATATATATATATAC	intron_variant intron_variant	MODIFIER	HG01496.hp2 HG03225.hp2 NA18906.hp2 others(1): Show HG01496.hp2 HG03225.hp2 NA18906.hp2 NA19240.hp2	a0001 a0006 a0010 a0001 a0006 a0010	a0001c0001 a0006c0006 a0010c0009 a0001c0001 a0006c0006 a0010c0009	a0001c0001t0001 a0006c0006t0005 a0010c0009t0001 a0001c0001t0001 a0006c0006t0005 a0010c0009t0001	a0001c0001t0001g0258 a0006c0006t0005g0143 a0010c0009t0001g0144 others(1): Show a0001c0001t0001g0258 a0006c0006t0005g0143 a0010c0009t0001g0144 a0010c0009t0001g0146	4	258	0.0155	34	c.239 others(55): Show c.2395-32317_2395-32316insTATATATATATATATATATATATA TATATATACA	PCDHA8	ENSG00000204962.6	transcript	ENST00000531613.2	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA9_chr5_140843382_141017347	140946631	T T	TATATATA others(27): Show TATATATATATATATATATATATATATATATACAC	intron_variant intron_variant	MODIFIER	HG02809.hp1 HG02809.hp1	a0005 a0005	a0005c0006 a0005c0006	a0005c0006t0003 a0005c0006t0003	a0005c0006t0003g0250 a0005c0006t0003g0250	1	256	0.0039	34	c.239 others(55): Show c.2395-32317_2395-32316insTATATATATATATATATATATATA TATATACACA	PCDHA9	ENSG00000204961.7	transcript	ENST00000532602.2	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA9_chr5_140843382_141017347	140946631	T T	TATATATA others(27): Show TATATATATATATATATATATATATATATATATAC	intron_variant intron_variant	MODIFIER	HG01496.hp2 HG03225.hp1 NA18906.hp2 others(1): Show HG01496.hp2 HG03225.hp1 NA18906.hp2 NA19240.hp1	a0002 a0008 a0009 a0002 a0008 a0009	a0002c0002 a0008c0008 a0009c0010 a0002c0002 a0008c0008 a0009c0010	a0002c0002t0001 a0008c0008t0006 a0009c0010t0005 a0002c0002t0001 a0008c0008t0006 a0009c0010t0005	a0002c0002t0001g0121 a0008c0008t0006g0220 a0008c0008t0006g0222 others(1): Show a0002c0002t0001g0121 a0008c0008t0006g0220 a0008c0008t0006g0222 a0009c0010t0005g0226	4	256	0.0156	34	c.239 others(55): Show c.2395-32317_2395-32316insTATATATATATATATATATATATA TATATATACA	PCDHA9	ENSG00000204961.7	transcript	ENST00000532602.2	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHAC1_chr5_140921299_141017347	140946631	T T	TATATATA others(27): Show TATATATATATATATATATATATATATATATACAC	intron_variant intron_variant	MODIFIER	HG02809.hp2 HG02896.hp2 HG02809.hp2 HG02896.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0005 a0001c0002t0001 a0001c0002t0005	a0001c0002t0001g0214 a0001c0002t0005g0212 a0001c0002t0001g0214 a0001c0002t0005g0212	2	280	0.0071	34	c.243 others(55): Show c.2433+17307_2433+17308insTATATATATATATATATATATATA TATATACACA	PCDHAC1	ENSG00000248383.5	transcript	ENST00000253807.3	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHAC1_chr5_140921299_141017347	140946631	T T	TATATATA others(27): Show TATATATATATATATATATATATATATATATATAC	intron_variant intron_variant	MODIFIER	HG01496.hp1 HG03225.hp1 NA18906.hp1 others(1): Show HG01496.hp1 HG03225.hp1 NA18906.hp1 NA19240.hp1	a0001 a0013 a0001 a0013	a0001c0002 a0001c0003 a0013c0014 a0001c0002 a0001c0003 a0013c0014	a0001c0002t0010 a0001c0002t0023 a0001c0003t0002 others(1): Show a0001c0002t0010 a0001c0002t0023 a0001c0003t0002 a0013c0014t0002	a0001c0002t0010g0161 a0001c0002t0023g0162 a0001c0003t0002g0243 others(1): Show a0001c0002t0010g0161 a0001c0002t0023g0162 a0001c0003t0002g0243 a0013c0014t0002g0249	4	280	0.0143	34	c.243 others(55): Show c.2433+17307_2433+17308insTATATATATATATATATATATATA TATATATACA	PCDHAC1	ENSG00000248383.5	transcript	ENST00000253807.3	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHB13_chr5_141208919_141223979	141221429	G G	GTATATAT others(27): Show GTATATATATATATATATATATATATATATATATA	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01123.hp1 HG03195.hp2 NA19077.hp2 HG01123.hp1 HG03195.hp2 NA19077.hp2	a0003 a0004 a0003 a0004	a0003c0003 a0004c0005 a0003c0003 a0004c0005	a0003c0003t0003 a0004c0005t0025 a0003c0003t0003 a0004c0005t0025	a0003c0003t0003g0000 a0004c0005t0025g0000 a0003c0003t0003g0000 a0004c0005t0025g0000	3	428	0.0070	34	c.49 others(45): Show c.4909_*4910insTATATATATATATATATATATATATATATATATA	PCDHB13	ENSG00000187372.11	transcript	ENST00000341948.6	protein_coding		2451		chr5	TogoVar

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