Joint Open Genome and Omics Platform (JoGo)

Search by Variant

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Chr

Chromosome name (e.g., chr11).

Snpeff genename

Exact SnpEff gene name.

Sampleids

Target sampleid (e.g. HG02615).

Snpeff haplotype class

Haplotype-annotation class (e.g., ahapid, ahapid+chapid).

Snpeff annotation impact

Exact impact level (e.g., HIGH, MODERATE, LOW).

Snpeff annotation impact detail

Keyword match in SnpEff annotation.

Hapid

One or more haplotype IDs (comma-separated; e.g., a0001, a01, a0001c0001, a01c02, a1c2, a0001c0001t0005, a0001c0001t0005g0018).

Samplehapid

Sample haplotype IDs to include (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

No_hapid

Haplotype IDs to exclude (comma-separated; e.g., a0001, a0002, a0001c0001, a0001c0001t0005, a1, a01).

No_samplehapid

Sample haplotype IDs to exclude (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

Start

Start position (GRCh38).

End

End position (GRCh38).

Minac

Minimum alternate allele count (≥).

Maxac

Maximum alternate allele count (≤).

Minlen

Minimum variant length (≥).

Maxlen

Maximum variant length (≤).

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regionname	pos	ref	alt	annotation	impact	samples	ahapids	achapids	acthapids	actghapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	external
FHIT_chr3_59742277_61256452	60860240	G G	GAGATACA others(28): Show GAGATACATCATATGTATACATGAGATACATCATAT	intron_variant intron_variant	MODIFIER	HG02257.hp1 HG02622.hp1 HG02257.hp1 HG02622.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0006 a0001c0001t0001g0035 a0001c0001t0001g0006 a0001c0001t0001g0035	2	46	0.0435	35	c.-11 others(56): Show c.-110-38230_-110-38229insATATGATGTATCTCATGTATACAT ATGATGTATCT	FHIT	ENSG00000189283.11	transcript	ENST00000492590.6	protein_coding	3/9			chr3	TogoVar
FHOD3_chr18_36292713_36785220	36380563	T T	TTTTCCTT others(28): Show TTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCC	intron_variant intron_variant	MODIFIER	HG00408.hp2 NA18747.hp1 NA19054.hp2 HG00408.hp2 NA18747.hp1 NA19054.hp2	a0001 a0009 a0016 a0001 a0009 a0016	a0001c0001 a0009c0013 a0016c0019 a0001c0001 a0009c0013 a0016c0019	a0001c0001t0001 a0009c0013t0001 a0016c0019t0001 a0001c0001t0001 a0009c0013t0001 a0016c0019t0001	a0001c0001t0001g0021 a0009c0013t0001g0032 a0016c0019t0001g0026 a0001c0001t0001g0021 a0009c0013t0001g0032 a0016c0019t0001g0026	3	168	0.0179	35	c.337 others(52): Show c.337+7823_337+7824insCTTTCCTTTCCTTTCCTTTCCTTTCCTT TCCTTTC	FHOD3	ENSG00000134775.16	transcript	ENST00000590592.6	protein_coding	3/28		INFO_REALIGN_3_PRIME	chr18	TogoVar
FHOD3_chr18_36292713_36785220	36380573	T T	TTTTCCTT others(28): Show TTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCC	intron_variant intron_variant	MODIFIER	HG02965.hp2 HG02965.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0001 a0002c0002t0001	a0002c0002t0001g0091 a0002c0002t0001g0091	1	168	0.0060	35	c.337 others(52): Show c.337+7833_337+7834insCTTTCCTTTCCTTTCCTTTCCTTTCCTT TCCTTTC	FHOD3	ENSG00000134775.16	transcript	ENST00000590592.6	protein_coding	3/28		INFO_REALIGN_3_PRIME	chr18	TogoVar
FHOD3_chr18_36292713_36785220	36380578	T T	TTTTCTTT others(28): Show TTTTCTTTTCCTTTCCTTTCCTTTCCTTTCCTTTCC	intron_variant intron_variant	MODIFIER	HG02809.hp2 HG02809.hp2	a0003 a0003	a0003c0007 a0003c0007	a0003c0007t0001 a0003c0007t0001	a0003c0007t0001g0061 a0003c0007t0001g0061	1	168	0.0060	35	c.337 others(52): Show c.337+7838_337+7839insTTTTCCTTTCCTTTCCTTTCCTTTCCTT TCCTTTC	FHOD3	ENSG00000134775.16	transcript	ENST00000590592.6	protein_coding	3/28		INFO_REALIGN_3_PRIME	chr18	TogoVar
FIGN_chr2_163597611_163741008	163676466	T T	TATATATA others(28): Show TATATATATATATATCTAGAGTCTGTGCTCTAGATA	intron_variant intron_variant	MODIFIER	HG03453.hp1 HG03453.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0021 a0001c0001t0021	a0001c0001t0021g0183 a0001c0001t0021g0183	1	266	0.0038	35	c.25+ others(52): Show c.25+58436_25+58437insTATCTAGAGCACAGACTCTAGATATATA TATATAT	FIGN	ENSG00000182263.14	transcript	ENST00000333129.4	protein_coding	2/2			chr2	TogoVar
FIGN_chr2_163597611_163741008	163736775	G G	GAAAACGA others(28): Show GAAAACGACGTGACTGCTTAGAGACCAGAGGGAAGA	upstream_gene_variant upstream_gene_variant	MODIFIER	HG03491.hp1 HG03491.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0012 a0001c0001t0012	a0001c0001t0012g0038 a0001c0001t0012g0038	1	266	0.0038	35	c.-10 others(46): Show c.-1084_-1083insTCTTCCCTCTGGTCTCTAAGCAGTCACGTCGTTT T	FIGN	ENSG00000182263.14	transcript	ENST00000333129.4	protein_coding		768		chr2	TogoVar
FKBP2_chr11_64236095_64249132	64237081	C C	CGAGAGAG others(28): Show CGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02523.hp2 HG02523.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0001 a0001c0001t0001g0001	1	332	0.0030	35	c.-40 others(46): Show c.-4056_-4055insGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA G	FKBP2	ENSG00000173486.14	transcript	ENST00000309366.9	protein_coding		4013		chr11	TogoVar
FKBP2_chr11_64236095_64249132	64237126	G G	GAGAGAGA others(28): Show GAGAGAGAGAGAGACAGAGACAGACAGAGACAGACA	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02055.hp1 HG02055.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0001 a0001c0001t0001g0001	1	332	0.0030	35	c.-40 others(46): Show c.-4011_-4010insAGAGAGAGAGAGACAGAGACAGACAGAGACAGAC A	FKBP2	ENSG00000173486.14	transcript	ENST00000309366.9	protein_coding		3968		chr11	TogoVar
FKBP5_chr6_35568590_35693915	35666394	T T	TAAAAAAA others(28): Show TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG02083.hp2 HG02083.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0007 a0001c0001t0007	a0001c0001t0007g0289 a0001c0001t0007g0289	1	302	0.0033	35	c.-20 others(54): Show c.-20+22409_-20+22410insTTTTTTTTTTTTTTTTTTTTTTTTTT TTTTTTTTT	FKBP5	ENSG00000096060.15	transcript	ENST00000357266.9	protein_coding	1/10			chr6	TogoVar
FLII_chr17_18239815_18263738	18255684	C C	CCTTACAG others(28): Show CCTTACAGACATGCAGAAAGCTTGAGCATGAGGGAA	intron_variant intron_variant	MODIFIER	NA19089.hp2 NA19089.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0146 a0001c0001t0001g0146	1	412	0.0024	35	c.247 others(50): Show c.247-456_247-422dupTTCCCTCATGCTCAAGCTTTCTGCATGTCT GTAAG	FLII	ENSG00000177731.16	transcript	ENST00000327031.9	protein_coding	3/29			chr17	TogoVar
FLNB_chr3_58003422_58177251	58100373	A A	AAAAAAAT others(28): Show AAAAAAATATATATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG02109.hp1 HG02109.hp1	a0002 a0002	a0002c0004 a0002c0004	a0002c0004t0001 a0002c0004t0001	a0002c0004t0001g0156 a0002c0004t0001g0156	1	180	0.0056	35	c.134 others(54): Show c.1345+1466_1345+1467insAAAAATATATATATATATATATATAT ATATATATA	FLNB	ENSG00000136068.16	transcript	ENST00000295956.9	protein_coding	8/45		INFO_REALIGN_3_PRIME	chr3	TogoVar
FLRT1_chr11_64030931_64124171	64035713	G G	GCCCCCGC others(28): Show GCCCCCGCCACCTCCTCCCCGCCCGCTGCCTCCCCC	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02630.hp2 HG03139.hp1 HG02630.hp2 HG03139.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0005 a0001c0001t0014 a0001c0001t0005 a0001c0001t0014	a0001c0001t0005g0284 a0001c0001t0014g0283 a0001c0001t0005g0284 a0001c0001t0014g0283	2	300	0.0067	35	c.-14 others(46): Show c.-1484_-1483insCCCCCGCCACCTCCTCCCCGCCCGCTGCCTCCCC C	FLRT1	ENSG00000126500.4	transcript	ENST00000682287.1	protein_coding		217		chr11	TogoVar
FLRT2_chr14_85525144_85659428	85555689	C C	CTTTTTTA others(28): Show CTTTTTTATTTTATTTTATTTTATTTTATTTTATTT	intron_variant intron_variant	MODIFIER	HG01257.hp1 HG01257.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0174 a0001c0001t0174	a0001c0001t0174g0124 a0001c0001t0174g0124	1	338	0.0030	35	c.-37 others(56): Show c.-377+25156_-377+25157insTTTTTATTTTATTTTATTTTATTT TATTTTATTTT	FLRT2	ENSG00000185070.12	transcript	ENST00000330753.6	protein_coding	1/1		INFO_REALIGN_3_PRIME	chr14	TogoVar
FLRT2_chr14_85525144_85659428	85643375	C C	CTTCCTTC others(28): Show CTTCCTTCCTTCCTTCCTTCCTTCCTTTCCTTTCCT	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG02523.hp1 NA18954.hp1 NA18990.hp1 HG02523.hp1 NA18954.hp1 NA18990.hp1	a0001 a0001	a0001c0001 a0001c0003 a0001c0001 a0001c0003	a0001c0001t0027 a0001c0001t0195 a0001c0003t0256 a0001c0001t0027 a0001c0001t0195 a0001c0003t0256	a0001c0001t0027g0327 a0001c0001t0195g0248 a0001c0003t0256g0113 a0001c0001t0027g0327 a0001c0001t0195g0248 a0001c0003t0256g0113	3	338	0.0089	35	c.19 others(48): Show c.19880_*19881insCCTTCCTTCCTTCCTTCCTTCCTTTCCTTTCC TTT	FLRT2	ENSG00000185070.12	transcript	ENST00000330753.6	protein_coding	2/2	19881	INFO_REALIGN_3_PRIME	chr14	TogoVar
FLRT3_chr20_14317985_14342612	14322201	T T	TATATATA others(28): Show TATATATATATATATATATATATATATATATATATA	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02004.hp1 HG02004.hp1	a0002 a0002	a0002c0003 a0002c0003	a0002c0003t0004 a0002c0003t0004	a0002c0003t0004g0003 a0002c0003t0004g0003	1	430	0.0023	35	c.33 others(46): Show c.3355_*3356insTATATATATATATATATATATATATATATATATA T	FLRT3	ENSG00000125848.10	transcript	ENST00000341420.5	protein_coding		783		chr20	TogoVar
FLT4_chr5_180596506_180654600	180614203	T T	TCCCGCGG others(28): Show TCCCGCGGTGGATGGGGAGACGGAGGGAAGCGTGTC	intron_variant intron_variant	MODIFIER	HG01928.hp1 HG01928.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0100 a0001c0001t0001g0100	1	388	0.0026	35	c.322 others(50): Show c.3220-25_3220-24insGACACGCTTCCCTCCGTCTCCCCATCCACC GCGGG	FLT4	ENSG00000037280.16	transcript	ENST00000261937.11	protein_coding	23/29			chr5	TogoVar
FLYWCH1_chr16_2906931_2956208	2939470	A A	AAAAGAAA others(28): Show AAAAGAAAACAGCCTGGCCAACATGGTGAAACCTTG	intron_variant intron_variant	MODIFIER	HG00323.hp2 HG00741.hp1 HG01943.hp2 others(2): Show HG00323.hp2 HG00741.hp1 HG01943.hp2 NA20752.hp2 homoSapiens_chm13v2.hp1	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0005 a0001c0003t0067 a0001c0003t0005 a0001c0003t0067	a0001c0003t0005g0010 a0001c0003t0005g0260 a0001c0003t0005g0281 others(1): Show a0001c0003t0005g0010 a0001c0003t0005g0260 a0001c0003t0005g0281 a0001c0003t0067g0245	5	416	0.0120	35	c.205 others(52): Show c.2051-529_2051-495dupTTGAAAGAAAACAGCCTGGCCAACATGG TGAAACC	FLYWCH1	ENSG00000059122.17	transcript	ENST00000253928.14	protein_coding	8/9		INFO_REALIGN_3_PRIME	chr16	TogoVar
FMN1_chr15_32760544_33199714	33048644	A A	AAAAAAAA others(28): Show AAAAAAAAAAAAAAAAAAAAAAAAAAAAACAAAAAC	intron_variant intron_variant	MODIFIER	HG01257.hp2 HG06807.hp2 HG01257.hp2 HG06807.hp2	a0001 a0037 a0001 a0037	a0001c0014 a0037c0082 a0001c0014 a0037c0082	a0001c0014t0012 a0037c0082t0004 a0001c0014t0012 a0037c0082t0004	a0001c0014t0012g0029 a0037c0082t0004g0044 a0001c0014t0012g0029 a0037c0082t0004g0044	2	196	0.0102	35	c.216 others(56): Show c.2161+16312_2161+16313insGTTTTTGTTTTTTTTTTTTTTTTT TTTTTTTTTTT	FMN1	ENSG00000248905.10	transcript	ENST00000616417.5	protein_coding	6/20			chr15	TogoVar
FMN1_chr15_32760544_33199714	33048644	A A	AAAAAAAA others(28): Show AAAAAAAAAAAAAAAAAAAAAAACAAAAACAAAAAC	intron_variant intron_variant	MODIFIER	HG01169.hp1 HG03098.hp1 HG01169.hp1 HG03098.hp1	a0001 a0003 a0001 a0003	a0001c0002 a0003c0007 a0001c0002 a0003c0007	a0001c0002t0021 a0003c0007t0001 a0001c0002t0021 a0003c0007t0001	a0001c0002t0021g0144 a0003c0007t0001g0059 a0001c0002t0021g0144 a0003c0007t0001g0059	2	196	0.0102	35	c.216 others(56): Show c.2161+16312_2161+16313insGTTTTTGTTTTTGTTTTTTTTTTT TTTTTTTTTTT	FMN1	ENSG00000248905.10	transcript	ENST00000616417.5	protein_coding	6/20			chr15	TogoVar
FMN2_chr1_240086883_240480187	240252953	C C	CTTTTTTT others(28): Show CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG02280.hp2 HG02280.hp2	a0001 a0001	a0001c0108 a0001c0108	a0001c0108t0001 a0001c0108t0001	a0001c0108t0001g0075 a0001c0108t0001g0075	1	174	0.0058	35	c.406 others(54): Show c.4066-4975_4066-4974insTTTTTTTTTTTTTTTTTTTTTTTTTT TTTTTTTTT	FMN2	ENSG00000155816.21	transcript	ENST00000319653.14	protein_coding	6/17		INFO_REALIGN_3_PRIME	chr1	TogoVar
FMNL2_chr2_152330174_152654826	152614741	T T	TCAAAACA others(28): Show TCAAAACAAAACAAAACAAAACAAAACAAAACAAAG	intron_variant intron_variant	MODIFIER	HG02055.hp2 HG02055.hp2	a0002 a0002	a0002c0009 a0002c0009	a0002c0009t0001 a0002c0009t0001	a0002c0009t0001g0153 a0002c0009t0001g0153	1	200	0.0050	35	c.106 others(50): Show c.1063-85_1063-84insCAAAACAAAGCAAAACAAAACAAAACAAAA CAAAA	FMNL2	ENSG00000157827.20	transcript	ENST00000288670.14	protein_coding	11/25		INFO_REALIGN_3_PRIME	chr2	TogoVar
FMO3_chr1_171085905_171122819	171096016	T T	TATTAATA others(28): Show TATTAATATATAATATATATTATATATAATATATAA	intron_variant intron_variant	MODIFIER	HG03579.hp1 HG03579.hp1	a0002 a0002	a0002c0006 a0002c0006	a0002c0006t0001 a0002c0006t0001	a0002c0006t0001g0106 a0002c0006t0001g0106	1	404	0.0025	35	c.132 others(52): Show c.132+3226_132+3227insATTAATATATAATATATATTATATATAA TATATAA	FMO3	ENSG00000007933.13	transcript	ENST00000367755.9	protein_coding	2/8			chr1	TogoVar
FN1_chr2_215355865_215441068	215401263	G G	GAAGGAAG others(28): Show GAAGGAAGGAAGGAAGGAAGGAAGGAAAGGAAAGGA	intron_variant intron_variant	MODIFIER	HG02109.hp2 HG02109.hp2	a0001 a0001	a0001c0058 a0001c0058	a0001c0058t0002 a0001c0058t0002	a0001c0058t0002g0153 a0001c0058t0002g0153	1	240	0.0042	35	c.325 others(54): Show c.3254-1913_3254-1912insTCCTTTCCTTTCCTTCCTTCCTTCCT TCCTTCCTT	FN1	ENSG00000115414.21	transcript	ENST00000354785.11	protein_coding	20/45			chr2	TogoVar
FNDC3A_chr13_48970912_49214779	49061318	T T	TCTTCCCT others(28): Show TCTTCCCTTCCCTTCCCTTCCCTTCCCTTCCCTTCC	intron_variant intron_variant	MODIFIER	NA18906.hp1 NA18906.hp1	a0001 a0001	a0001c0005 a0001c0005	a0001c0005t0001 a0001c0005t0001	a0001c0005t0001g0158 a0001c0005t0001g0158	1	292	0.0034	35	c.100 others(54): Show c.100-13967_100-13933dupCCCTTCCCTTCCCTTCCCTTCCCTTC CCTTCCCTT	FNDC3A	ENSG00000102531.16	transcript	ENST00000492622.6	protein_coding	2/25		INFO_REALIGN_3_PRIME	chr13	TogoVar
FNDC3B_chr3_172034578_172406669	172181395	C C	CAAAAAAA others(28): Show CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG03041.hp2 HG03041.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0002 a0001c0002t0002	a0001c0002t0002g0087 a0001c0002t0002g0087	1	196	0.0051	35	c.188 others(54): Show c.188-45457_188-45456insAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAA	FNDC3B	ENSG00000075420.13	transcript	ENST00000415807.7	protein_coding	3/25		INFO_REALIGN_3_PRIME	chr3	TogoVar
FNDC3B_chr3_172034578_172406669	172193328	C C	CCCCTCCC others(28): Show CCCCTCCCCTCCCCTCCCCTCCCCTCCCCTCCCCTT	intron_variant intron_variant	MODIFIER	HG01515.hp2 HG03209.hp1 HG03209.hp2 others(5): Show HG01515.hp2 HG03209.hp1 HG03209.hp2 HG03710.hp2 NA18954.hp1 NA18959.hp1 NA18993.hp2 NA20805.hp2	a0001 a0002 a0003 a0001 a0002 a0003	a0001c0001 a0002c0003 a0002c0004 others(2): Show a0001c0001 a0002c0003 a0002c0004 a0002c0010 a0003c0015	a0001c0001t0057 a0002c0003t0002 a0002c0003t0003 others(5): Show a0001c0001t0057 a0002c0003t0002 a0002c0003t0003 a0002c0003t0011 a0002c0004t0056 a0002c0004t0070 a0002c0010t0006 a0003c0015t0013	a0001c0001t0057g0098 a0002c0003t0002g0037 a0002c0003t0003g0015 others(5): Show a0001c0001t0057g0098 a0002c0003t0002g0037 a0002c0003t0003g0015 a0002c0003t0011g0162 a0002c0004t0056g0064 a0002c0004t0070g0056 a0002c0010t0006g0026 a0003c0015t0013g0076	8	196	0.0408	35	c.188 others(54): Show c.188-33539_188-33538insCCCCTCCCCTCCCCTCCCCTCCCCTC CCCTTCCCT	FNDC3B	ENSG00000075420.13	transcript	ENST00000415807.7	protein_coding	3/25		INFO_REALIGN_3_PRIME	chr3	TogoVar
FOCAD_chr9_20679259_21000950	20815123	G G	GTGTTTTT others(28): Show GTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG01106.hp1 HG01106.hp1	a0003 a0003	a0003c0003 a0003c0003	a0003c0003t0001 a0003c0003t0001	a0003c0003t0001g0117 a0003c0003t0001g0117	1	320	0.0031	35	c.145 others(54): Show c.1456-4672_1456-4671insGTTTTTTTTTTTTTTTTTTTTTTTTT TTTTTTTTT	FOCAD	ENSG00000188352.13	transcript	ENST00000338382.11	protein_coding	11/43		INFO_REALIGN_3_PRIME	chr9	TogoVar
FOCAD_chr9_20679259_21000950	20986266	A A	ATTTTTTT others(28): Show ATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	splice_region_variant others(1): Show splice_region_variant intron_variant	LOW	HG02683.hp2 NA18983.hp2 HG02683.hp2 NA18983.hp2	a0002 a0013 a0002 a0013	a0002c0002 a0013c0014 a0002c0002 a0013c0014	a0002c0002t0001 a0013c0014t0001 a0002c0002t0001 a0013c0014t0001	a0002c0002t0001g0264 a0013c0014t0001g0316 a0002c0002t0001g0264 a0013c0014t0001g0316	2	320	0.0063	35	c.472 others(48): Show c.4729-5_4729-4insTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT TTT	FOCAD	ENSG00000188352.13	transcript	ENST00000338382.11	protein_coding	39/43		INFO_REALIGN_3_PRIME	chr9	TogoVar
FOXI1_chr5_170100897_170114734	170105348	G G	GGAGAGGG others(28): Show GGAGAGGGGGGGGGGGGAGAGAGAGAGAGAGAGAGA	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02559.hp1 HG02559.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0002 a0001c0002t0001g0002	1	412	0.0024	35	c.-61 others(44): Show c.-610_-609insGAGAGGGGGGGGGGGGAGAGAGAGAGAGAGAGAGA	FOXI1	ENSG00000168269.10	transcript	ENST00000306268.8	protein_coding		548		chr5	TogoVar
FOXI1_chr5_170100897_170114734	170105348	G G	GGAGAGGG others(28): Show GGAGAGGGGGGGGGGGGGGGGAGAGAGAGAGAGAGA	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02809.hp2 HG02809.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0002 a0001c0002t0002	a0001c0002t0002g0002 a0001c0002t0002g0002	1	412	0.0024	35	c.-61 others(44): Show c.-610_-609insGAGAGGGGGGGGGGGGGGGGAGAGAGAGAGAGAGA	FOXI1	ENSG00000168269.10	transcript	ENST00000306268.8	protein_coding		548		chr5	TogoVar
FOXI1_chr5_170100897_170114734	170105348	G G	GGAGGGGG others(28): Show GGAGGGGGGGGGGGGGGAGAGAGAGAGAGAGAGAGA	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02451.hp2 HG02451.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0002 a0001c0002t0002	a0001c0002t0002g0002 a0001c0002t0002g0002	1	412	0.0024	35	c.-61 others(44): Show c.-610_-609insGAGGGGGGGGGGGGGGAGAGAGAGAGAGAGAGAGA	FOXI1	ENSG00000168269.10	transcript	ENST00000306268.8	protein_coding		548		chr5	TogoVar
FOXI1_chr5_170100897_170114734	170105348	G G	GGAGGGGG others(28): Show GGAGGGGGGGGGGGGGGGGAGAGAGAGAGAGAGAGA	upstream_gene_variant upstream_gene_variant	MODIFIER	HG03453.hp2 HG03453.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0002 a0001c0002t0002	a0001c0002t0002g0004 a0001c0002t0002g0004	1	412	0.0024	35	c.-61 others(44): Show c.-610_-609insGAGGGGGGGGGGGGGGGGAGAGAGAGAGAGAGAGA	FOXI1	ENSG00000168269.10	transcript	ENST00000306268.8	protein_coding		548		chr5	TogoVar
FOXI1_chr5_170100897_170114734	170105356	G G	GGGGGGGG others(28): Show GGGGGGGGGGGAGAGAGAGAGAGAGAGAGAGAGAGA	upstream_gene_variant upstream_gene_variant	MODIFIER	HG03834.hp1 NA19003.hp2 HG03834.hp1 NA19003.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0002 a0001c0002t0002	a0001c0002t0002g0004 a0001c0002t0002g0004	2	412	0.0049	35	c.-60 others(44): Show c.-602_-601insGGGGGGGGGGAGAGAGAGAGAGAGAGAGAGAGAGA	FOXI1	ENSG00000168269.10	transcript	ENST00000306268.8	protein_coding		540		chr5	TogoVar
FOXI1_chr5_170100897_170114734	170105356	G G	GGGGGGGG others(28): Show GGGGGGGGGGGGGAGAGAGAGAGAGAGAGAGAGAGA	upstream_gene_variant upstream_gene_variant	MODIFIER	NA18984.hp1 NA18984.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0002 a0001c0002t0002	a0001c0002t0002g0004 a0001c0002t0002g0004	1	412	0.0024	35	c.-60 others(44): Show c.-602_-601insGGGGGGGGGGGGAGAGAGAGAGAGAGAGAGAGAGA	FOXI1	ENSG00000168269.10	transcript	ENST00000306268.8	protein_coding		540		chr5	TogoVar
FOXI1_chr5_170100897_170114734	170105356	G G	GGGGGGGG others(28): Show GGGGGGGGGGGGGGGAGAGAGAGAGAGAGAGAGAGA	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02015.hp2 HG02015.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0002 a0001c0002t0002	a0001c0002t0002g0004 a0001c0002t0002g0004	1	412	0.0024	35	c.-60 others(44): Show c.-602_-601insGGGGGGGGGGGGGGAGAGAGAGAGAGAGAGAGAGA	FOXI1	ENSG00000168269.10	transcript	ENST00000306268.8	protein_coding		540		chr5	TogoVar
FOXI1_chr5_170100897_170114734	170105368	G G	GAGAGAGA others(28): Show GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA	upstream_gene_variant upstream_gene_variant	MODIFIER	NA19002.hp1 NA19002.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0003 a0001c0001t0001g0003	1	412	0.0024	35	c.-59 others(44): Show c.-590_-589insAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA	FOXI1	ENSG00000168269.10	transcript	ENST00000306268.8	protein_coding		528		chr5	TogoVar
FOXJ3_chr1_42171548_42340235	42183309	G G	GGGGCGGG others(28): Show GGGGCGGGGGAGGGGAGGGGAGGGGAGGGGAGGGGA	intron_variant intron_variant	MODIFIER	NA19240.hp2 NA19240.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0009 a0001c0001t0009	a0001c0001t0009g0220 a0001c0001t0009g0220	1	332	0.0030	35	c.164 others(54): Show c.1646-1286_1646-1285insTCCCCTCCCCTCCCCTCCCCTCCCCT CCCCCGCCC	FOXJ3	ENSG00000198815.9	transcript	ENST00000361346.6	protein_coding	11/12			chr1	TogoVar
FOXJ3_chr1_42171548_42340235	42183309	G G	GGGGTGGG others(28): Show GGGGTGGGGGAGGGGAGGGGAGGGGAGGAGAGGGGA	intron_variant intron_variant	MODIFIER	HG02970.hp1 HG02970.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0219 a0001c0001t0003g0219	1	332	0.0030	35	c.164 others(54): Show c.1646-1286_1646-1285insTCCCCTCTCCTCCCCTCCCCTCCCCT CCCCCACCC	FOXJ3	ENSG00000198815.9	transcript	ENST00000361346.6	protein_coding	11/12			chr1	TogoVar
FOXJ3_chr1_42171548_42340235	42183320	G G	GGGGAGGG others(28): Show GGGGAGGGGAGGGGAGGGGAGGGGAGGGGAGGGGAA	intron_variant intron_variant	MODIFIER	NA18522.hp1 NA18522.hp1	a0004 a0004	a0004c0004 a0004c0004	a0004c0004t0003 a0004c0004t0003	a0004c0004t0003g0317 a0004c0004t0003g0317	1	332	0.0030	35	c.164 others(54): Show c.1646-1297_1646-1296insTTCCCCTCCCCTCCCCTCCCCTCCCC TCCCCTCCC	FOXJ3	ENSG00000198815.9	transcript	ENST00000361346.6	protein_coding	11/12			chr1	TogoVar
FOXN3_chr14_89151177_89422233	89334611	C C	CATAAAAT others(28): Show CATAAAATAAAATAAAATAAAATAAAATAAAATAAA	intron_variant intron_variant	MODIFIER	HG00544.hp2 HG02040.hp1 HG02056.hp2 others(3): Show HG00544.hp2 HG02040.hp1 HG02056.hp2 HG02165.hp1 HG03834.hp2 NA18995.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0005 a0001c0001t0006 others(3): Show a0001c0001t0004 a0001c0001t0005 a0001c0001t0006 a0001c0001t0007 a0001c0001t0009 a0001c0001t0075	a0001c0001t0004g0196 a0001c0001t0005g0059 a0001c0001t0006g0157 others(3): Show a0001c0001t0004g0196 a0001c0001t0005g0059 a0001c0001t0006g0157 a0001c0001t0007g0061 a0001c0001t0009g0019 a0001c0001t0075g0051	6	230	0.0261	35	c.680 others(54): Show c.680+16060_680+16061insTTTATTTTATTTTATTTTATTTTATT TTATTTTAT	FOXN3	ENSG00000053254.16	transcript	ENST00000557258.6	protein_coding	3/5			chr14	TogoVar
FOXN3_chr14_89151177_89422233	89361435	C C	CCACCACC others(28): Show CCACCACCACCACCACCACCACCTCCACCACCACCT	intron_variant intron_variant	MODIFIER	NA18947.hp1 NA18947.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0007 a0001c0001t0007	a0001c0001t0007g0205 a0001c0001t0007g0205	1	230	0.0044	35	c.544 others(54): Show c.544-10628_544-10627insAGGTGGTGGTGGAGGTGGTGGTGGTG GTGGTGGTG	FOXN3	ENSG00000053254.16	transcript	ENST00000557258.6	protein_coding	2/5			chr14	TogoVar
FOXN3_chr14_89151177_89422233	89363946	A A	AAATATAT others(28): Show AAATATATATATTATATATATATTATATATATATAT	intron_variant intron_variant	MODIFIER	HG02572.hp1 HG02572.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0085 a0001c0001t0085	a0001c0001t0085g0217 a0001c0001t0085g0217	1	230	0.0044	35	c.544 others(54): Show c.544-13139_544-13138insATATATATATATAATATATATATAAT ATATATATT	FOXN3	ENSG00000053254.16	transcript	ENST00000557258.6	protein_coding	2/5			chr14	TogoVar
FOXP1_chr3_70949708_71588728	71113712	C C	CAAAATAA others(28): Show CAAAATAAAATAAAATAAAATAAAATAAAATAAAAT	intron_variant intron_variant	MODIFIER	HG02132.hp1 NA21309.hp1 HG02132.hp1 NA21309.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0009 a0001c0001t0051 a0001c0001t0009 a0001c0001t0051	a0001c0001t0009g0016 a0001c0001t0051g0081 a0001c0001t0009g0016 a0001c0001t0051g0081	2	96	0.0208	35	c.181 others(52): Show c.181-1110_181-1076dupATTTTATTTTATTTTATTTTATTTTATT TTATTTT	FOXP1	ENSG00000114861.24	transcript	ENST00000649528.3	protein_coding	6/20			chr3	TogoVar
FOXP1_chr3_70949708_71588728	71435378	G G	GGGACGGA others(28): Show GGGACGGAGGGAGGGAGGAAGGGACGGAGGGAGGGA	intron_variant intron_variant	MODIFIER	NA21309.hp1 NA21309.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0009 a0001c0001t0009	a0001c0001t0009g0016 a0001c0001t0009g0016	1	96	0.0104	35	c.-16 others(56): Show c.-168+58047_-168+58048insTCCCTCCCTCCGTCCCTTCCTCCC TCCCTCCGTCC	FOXP1	ENSG00000114861.24	transcript	ENST00000649528.3	protein_coding	3/20			chr3	TogoVar
FREM1_chr9_14732152_14915428	14778681	G G	GAGGGAAG others(28): Show GAGGGAAGGGAAGGGAAGGGAAGGGAAGGGAAGGGA	intron_variant intron_variant	MODIFIER	HG00597.hp2 HG01346.hp2 HG02071.hp1 others(8): Show HG00597.hp2 HG01346.hp2 HG02071.hp1 HG02129.hp1 HG02145.hp2 HG04115.hp1 NA18947.hp1 NA18981.hp1 NA19004.hp2 NA19011.hp1 NA19060.hp2	a0001 a0006 a0007 others(6): Show a0001 a0006 a0007 a0021 a0022 a0035 a0038 a0047 a0069	a0001c0011 a0006c0083 a0007c0032 others(8): Show a0001c0011 a0006c0083 a0007c0032 a0007c0090 a0021c0043 a0021c0211 a0022c0051 a0035c0131 a0038c0195 a0047c0098 a0069c0076	a0001c0011t0001 a0006c0083t0001 a0007c0032t0011 others(8): Show a0001c0011t0001 a0006c0083t0001 a0007c0032t0011 a0007c0090t0001 a0021c0043t0001 a0021c0211t0002 a0022c0051t0002 a0035c0131t0001 a0038c0195t0002 a0047c0098t0001 a0069c0076t0001	a0001c0011t0001g0025 a0006c0083t0001g0251 a0007c0032t0011g0002 others(8): Show a0001c0011t0001g0025 a0006c0083t0001g0251 a0007c0032t0011g0002 a0007c0090t0001g0072 a0021c0043t0001g0302 a0021c0211t0002g0119 a0022c0051t0002g0262 a0035c0131t0001g0247 a0038c0195t0002g0287 a0047c0098t0001g0223 a0069c0076t0001g0249	11	346	0.0318	35	c.444 others(54): Show c.4443-2513_4443-2479dupTCCCTTCCCTTCCCTTCCCTTCCCTT CCCTTCCCT	FREM1	ENSG00000164946.20	transcript	ENST00000380880.4	protein_coding	24/36			chr9	TogoVar
FRMD1_chr6_168048095_168084212	168058380	T T	TGCCTCCC others(28): Show TGCCTCCCGTGCCCAGCCCTCTTCTCTCTCCATCCA	intron_variant intron_variant	MODIFIER	HG02717.hp1 HG02717.hp1	a0002 a0002	a0002c0003 a0002c0003	a0002c0003t0062 a0002c0003t0062	a0002c0003t0062g0226 a0002c0003t0062g0226	1	402	0.0025	35	c.140 others(52): Show c.1407+709_1407+743dupTGGATGGAGAGAGAAGAGGGCTGGGCAC GGGAGGC	FRMD1	ENSG00000153303.18	transcript	ENST00000283309.11	protein_coding	10/10			chr6	TogoVar
FRMD3_chr9_83239622_83543401	83407847	C C	CTCTCTCT others(28): Show CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCATCTT	intron_variant intron_variant	MODIFIER	HG02572.hp2 HG03540.hp1 NA21309.hp1 HG02572.hp2 HG03540.hp1 NA21309.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0022 a0001c0001t0001 a0001c0001t0022	a0001c0001t0001g0119 a0001c0001t0001g0185 a0001c0001t0022g0023 a0001c0001t0001g0119 a0001c0001t0001g0185 a0001c0001t0022g0023	3	242	0.0124	35	c.148 others(54): Show c.148-18140_148-18139insAAGATGAGAGAGAGAGAGAGAGAGAG AGAGAGAGA	FRMD3	ENSG00000172159.16	transcript	ENST00000304195.8	protein_coding	1/13			chr9	TogoVar
FRMD4A_chr10_13638706_14335924	13714023	T T	TACATATA others(28): Show TACATATATAAAATATACATATATATAAAATATATA	intron_variant intron_variant	MODIFIER	HG00408.hp1 NA18957.hp2 HG00408.hp1 NA18957.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0004 a0001c0001t0003 a0001c0001t0004	a0001c0001t0003g0104 a0001c0001t0004g0008 a0001c0001t0003g0104 a0001c0001t0004g0008	2	134	0.0149	35	c.760 others(52): Show c.760-6911_760-6910insTATATATTTTATATATATGTATATTTTA TATATGT	FRMD4A	ENSG00000151474.23	transcript	ENST00000357447.7	protein_coding	12/24			chr10	TogoVar
FRMPD4_chrX_12133473_12729523	12193774	G G	GAAAGAAA others(28): Show GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA	intron_variant intron_variant	MODIFIER	HG01169.hp2 HG02293.hp2 HG02818.hp1 HG01169.hp2 HG02293.hp2 HG02818.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0002c0003 a0002c0004 a0001c0001 a0002c0003 a0002c0004	a0001c0001t0001 a0002c0003t0003 a0002c0004t0001 a0001c0001t0001 a0002c0003t0003 a0002c0004t0001	a0001c0001t0001g0083 a0002c0003t0003g0048 a0002c0004t0001g0087 a0001c0001t0001g0083 a0002c0003t0003g0048 a0002c0004t0001g0087	3	174	0.0172	35	c.41+ others(52): Show c.41+54762_41+54763insAAAGAAAGAAAGAAAGAAAGAAAGAAAG AAAGAAA	FRMPD4	ENSG00000169933.17	transcript	ENST00000675598.1	protein_coding	1/16			chrX	TogoVar
FSD1L_chr9_105443034_105557433	105533416	C C	CTTTTTTT others(28): Show CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG03453.hp1 HG03453.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0005 a0001c0001t0005	a0001c0001t0005g0158 a0001c0001t0005g0158	1	380	0.0026	35	c.102 others(54): Show c.1026-1053_1026-1052insTTTTTTTTTTTTTTTTTTTTTTTTTT TTTTTTTTT	FSD1L	ENSG00000106701.13	transcript	ENST00000481272.6	protein_coding	10/13		INFO_REALIGN_3_PRIME	chr9	TogoVar

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