Joint Open Genome and Omics Platform (JoGo)

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Snpeff annotation impact detail

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view	regionname	pos	ref	alt	annotation	impact	samples	ahapids	chapids	thapids	thapids	ac	an	af	len	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	distance	status	chr	external
	ZSCAN5A_chr19_56216303_56319839	56235366	G G	GCCTCTGA others(28): Show GCCTCTGATTGACCGTGGGCCAAGCCTCCACTCCAA	intron_variant intron_variant	MODIFIER	HG03209.hp1 NA20300.hp1 HG03209.hp1 NA20300.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0003 a0001c0001t0002 a0001c0001t0003	a0001c0001t0002g0020 a0001c0001t0003g0003 a0001c0001t0002g0020 a0001c0001t0003g0003	2	356	0.0056	35	c.-12 others(56): Show c.-127-10194_-127-10193insTTGGAGTGGAGGCTTGGCCCACGG TCAATCAGAGG		ZSCAN5A	ENSG00000131848.10	transcript	ENST00000683990.1	protein_coding	2/5						chr19	TogoVar
	ZSCAN5A_chr19_56216303_56319839	56236160	T T	TCTCCACT others(28): Show TCTCCACTCCAGCCTCTGATGGACGGTGGGCCAAGC	intron_variant intron_variant	MODIFIER	HG00099.hp1 HG00597.hp1 HG00621.hp2 others(50): Show HG00099.hp1 HG00597.hp1 HG00621.hp2 HG00639.hp2 HG00642.hp2 HG00673.hp1 HG00738.hp1 HG01070.hp2 HG01071.hp2 HG01081.hp2 HG01099.hp2 HG01168.hp2 HG01169.hp1 HG01175.hp1 HG01175.hp2 HG01257.hp2 HG01346.hp1 HG01516.hp1 HG01975.hp1 HG01981.hp1 HG02040.hp1 HG02083.hp2 HG02132.hp1 HG02145.hp2 HG02148.hp2 HG02602.hp2 HG02717.hp1 HG02922.hp2 HG03540.hp2 HG04199.hp1 NA18906.hp2 NA18939.hp2 NA18940.hp1 NA18940.hp2 NA18942.hp1 NA18945.hp1 NA18950.hp1 NA18954.hp2 NA18955.hp2 NA18961.hp2 NA18962.hp2 NA18968.hp1 NA18983.hp1 NA18990.hp1 NA18999.hp1 NA19007.hp1 NA19057.hp2 NA19062.hp1 NA19063.hp1 NA19065.hp1 NA19082.hp1 NA19085.hp2 NA19091.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0002c0002 a0001c0001 a0002c0002	a0001c0001t0001 a0001c0001t0009 a0002c0002t0001 others(1): Show a0001c0001t0001 a0001c0001t0009 a0002c0002t0001 a0002c0002t0002	a0001c0001t0001g0036 a0001c0001t0001g0045 a0001c0001t0001g0047 others(50): Show a0001c0001t0001g0036 a0001c0001t0001g0045 a0001c0001t0001g0047 a0001c0001t0001g0072 a0001c0001t0001g0082 a0001c0001t0001g0088 a0001c0001t0001g0126 a0001c0001t0001g0148 a0001c0001t0001g0149 a0001c0001t0001g0150 a0001c0001t0001g0168 a0001c0001t0001g0175 a0001c0001t0001g0181 a0001c0001t0001g0185 a0001c0001t0001g0193 a0001c0001t0001g0236 a0001c0001t0001g0237 a0001c0001t0001g0238 a0001c0001t0001g0239 a0001c0001t0001g0253 a0001c0001t0001g0268 a0001c0001t0001g0269 a0001c0001t0001g0306 a0001c0001t0001g0322 a0001c0001t0001g0326 a0001c0001t0009g0190 a0002c0002t0001g0061 a0002c0002t0001g0070 a0002c0002t0001g0071 a0002c0002t0001g0076 a0002c0002t0001g0080 a0002c0002t0001g0107 a0002c0002t0001g0116 a0002c0002t0001g0123 a0002c0002t0001g0178 a0002c0002t0001g0187 a0002c0002t0001g0205 a0002c0002t0001g0207 a0002c0002t0001g0226 a0002c0002t0001g0229 a0002c0002t0001g0258 a0002c0002t0001g0259 a0002c0002t0001g0260 a0002c0002t0001g0263 a0002c0002t0001g0264 a0002c0002t0001g0293 a0002c0002t0001g0294 a0002c0002t0001g0297 a0002c0002t0001g0321 a0002c0002t0001g0348 a0002c0002t0001g0351 a0002c0002t0001g0359 a0002c0002t0002g0012	53	278	0.1906	35	c.-12 others(56): Show c.-127-11022_-127-10988dupGCTTGGCCCACCGTCCATCAGAGG CTGGAGTGGAG		ZSCAN5A	ENSG00000131848.10	transcript	ENST00000683990.1	protein_coding	2/5						chr19	TogoVar
	ZSWIM4_chr19_13790443_13837254	13792402	G G	GAAAAAAT others(28): Show GAAAAAATAAGCAAACAGGAAAAAAAAATAAAAATA	upstream_gene_variant upstream_gene_variant	MODIFIER	NA18977.hp2 NA18977.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0005 a0001c0002t0005	a0001c0002t0005g0056 a0001c0002t0005g0056	1	354	0.0028	35	c.-32 others(46): Show c.-3247_-3246insAAAAAATAAGCAAACAGGAAAAAAAAATAAAAAT A		ZSWIM4	ENSG00000132003.10	transcript	ENST00000590508.6	protein_coding					3040		chr19	TogoVar
	ZSWIM5_chr1_45011399_45211605	45044746	A A	AAAAAAAA others(28): Show AAAAAAAAAAAAAAATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG02451.hp1 NA18906.hp1 HG02451.hp1 NA18906.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0230 a0001c0001t0001g0231 a0001c0001t0001g0230 a0001c0001t0001g0231	2	132	0.0152	35	c.143 others(54): Show c.1433-1352_1433-1351insATATATATATATATATATATATTTTT TTTTTTTTT		ZSWIM5	ENSG00000162415.7	transcript	ENST00000359600.6	protein_coding	5/13						chr1	TogoVar
	ZSWIM5_chr1_45011399_45211605	45044746	A A	AAAAAAAA others(28): Show AAAAAAAAAAAAATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG03540.hp1 HG03540.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0229 a0001c0001t0001g0229	1	131	0.0076	35	c.143 others(54): Show c.1433-1352_1433-1351insATATATATATATATATATATATATTT TTTTTTTTT		ZSWIM5	ENSG00000162415.7	transcript	ENST00000359600.6	protein_coding	5/13						chr1	TogoVar
	ZSWIM6_chr5_61327258_61551172	61454214	A A	AATTTTAT others(28): Show AATTTTATTTTATTTTATTTTATTTTATTTTATTTT	intron_variant intron_variant	MODIFIER	HG02083.hp2 NA19082.hp2 HG02083.hp2 NA19082.hp2	a0003 a0005 a0003 a0005	a0003c0004 a0005c0009 a0003c0004 a0005c0009	a0003c0004t0003 a0005c0009t0003 a0003c0004t0003 a0005c0009t0003	a0003c0004t0003g0242 a0005c0009t0003g0236 a0003c0004t0003g0242 a0005c0009t0003g0236	2	21	0.0952	35	c.677 others(54): Show c.677-18441_677-18407dupATTTTATTTTATTTTATTTTATTTTA TTTTATTTT		ZSWIM6	ENSG00000130449.6	transcript	ENST00000252744.6	protein_coding	1/13					INFO_REALIGN_3_PRIME	chr5	TogoVar
	ZSWIM7_chr17_15971560_16004704	15976098	A A	AAAAAAAA others(28): Show AAAAAAAAAAAAAAAAAAAAAAAAAAATATATATAT	downstream_gene_variant downstream_gene_variant	MODIFIER	NA18977.hp1 NA18977.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0138 a0001c0001t0001g0138	1	185	0.0054	35	c.19 others(46): Show c.1948_*1949insATATATATATTTTTTTTTTTTTTTTTTTTTTTTT T		ZSWIM7	ENSG00000214941.8	transcript	ENST00000399277.6	protein_coding					461		chr17	TogoVar
	ZYG11B_chr1_52721453_52832336	52776229	A A	AAAAAAAA others(28): Show AAAAAAAAATATATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG00140.hp2 HG00140.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0133 a0001c0001t0001g0133	1	9	0.1111	35	c.952 others(52): Show c.952-3623_952-3622insAAAAAAATATATATATATATATATATAT ATATATA		ZYG11B	ENSG00000162378.13	transcript	ENST00000294353.7	protein_coding	3/13					INFO_REALIGN_3_PRIME	chr1	TogoVar
	ZYG11B_chr1_52721453_52832336	52776229	A A	AAAAATAT others(28): Show AAAAATATATATATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG01258.hp2 HG01258.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0079 a0001c0002t0079	a0001c0002t0079g0007 a0001c0002t0079g0007	1	9	0.1111	35	c.952 others(52): Show c.952-3623_952-3622insAAATATATATATATATATATATATATAT ATATATA		ZYG11B	ENSG00000162378.13	transcript	ENST00000294353.7	protein_coding	3/13					INFO_REALIGN_3_PRIME	chr1	TogoVar
	ZYG11B_chr1_52721453_52832336	52793901	T T	TTCCTTCC others(28): Show TTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCC	intron_variant intron_variant	MODIFIER	HG02145.hp1 HG03209.hp1 HG02145.hp1 HG03209.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0006 a0001c0001t0053 a0001c0001t0006 a0001c0001t0053	a0001c0001t0006g0178 a0001c0001t0053g0004 a0001c0001t0006g0178 a0001c0001t0053g0004	2	335	0.0060	35	c.133 others(54): Show c.1335-2390_1335-2389insCCTTCCTTCCTTCCTTCCTTCCTTCC TTCCTTCCT		ZYG11B	ENSG00000162378.13	transcript	ENST00000294353.7	protein_coding	6/13					INFO_REALIGN_3_PRIME	chr1	TogoVar
	ZYG11B_chr1_52721453_52832336	52797010	A A	ATTTATAT others(28): Show ATTTATATATTATATATAAATTTATATATATAAATT	intron_variant intron_variant	MODIFIER	HG00140.hp1 HG00140.hp2 HG00323.hp2 others(87): Show HG00140.hp1 HG00140.hp2 HG00323.hp2 HG00438.hp2 HG00597.hp1 HG00597.hp2 HG00621.hp1 HG00642.hp1 HG00735.hp1 HG00738.hp1 HG01069.hp1 HG01071.hp2 HG01106.hp1 HG01243.hp1 HG01255.hp2 HG01257.hp1 HG01346.hp2 HG01515.hp1 HG01516.hp1 HG01928.hp1 HG01975.hp2 HG01978.hp1 HG01993.hp1 HG02109.hp2 HG02129.hp1 HG02135.hp1 HG02165.hp2 HG02293.hp1 HG02523.hp1 HG02523.hp2 HG02683.hp2 HG02698.hp1 HG02738.hp1 HG02738.hp2 HG03017.hp2 HG03239.hp2 HG03688.hp2 HG03704.hp1 HG03831.hp1 HG03927.hp1 HG04204.hp1 HG04228.hp1 HG04228.hp2 NA18612.hp1 NA18747.hp1 NA18943.hp2 NA18944.hp1 NA18946.hp1 NA18948.hp1 NA18949.hp1 NA18954.hp1 NA18959.hp2 NA18961.hp1 NA18961.hp2 NA18964.hp2 NA18970.hp2 NA18971.hp2 NA18972.hp1 NA18973.hp2 NA18974.hp2 NA18975.hp1 NA18978.hp1 NA18979.hp1 NA18981.hp1 NA18982.hp1 NA18983.hp2 NA18986.hp2 NA18988.hp1 NA18989.hp2 NA18998.hp2 NA18999.hp1 NA19000.hp2 NA19002.hp1 NA19004.hp2 NA19006.hp1 NA19006.hp2 NA19009.hp2 NA19010.hp1 NA19011.hp1 NA19012.hp1 NA19056.hp2 NA19064.hp1 NA19070.hp1 NA19079.hp2 NA19080.hp2 NA19081.hp1 NA19082.hp1 NA19087.hp1 NA19091.hp2 NA20300.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0006 a0001c0001t0007 others(15): Show a0001c0001t0001 a0001c0001t0006 a0001c0001t0007 a0001c0001t0011 a0001c0001t0013 a0001c0001t0018 a0001c0001t0019 a0001c0001t0022 a0001c0001t0026 a0001c0001t0027 a0001c0001t0030 a0001c0001t0032 a0001c0001t0033 a0001c0001t0038 a0001c0001t0062 a0001c0001t0065 a0001c0001t0069 a0001c0001t0073	a0001c0001t0001g0001 a0001c0001t0001g0043 a0001c0001t0001g0044 others(87): Show a0001c0001t0001g0001 a0001c0001t0001g0043 a0001c0001t0001g0044 a0001c0001t0001g0045 a0001c0001t0001g0046 a0001c0001t0001g0048 a0001c0001t0001g0049 a0001c0001t0001g0060 a0001c0001t0001g0061 a0001c0001t0001g0062 a0001c0001t0001g0063 a0001c0001t0001g0064 a0001c0001t0001g0065 a0001c0001t0001g0066 a0001c0001t0001g0067 a0001c0001t0001g0069 a0001c0001t0001g0071 a0001c0001t0001g0074 a0001c0001t0001g0075 a0001c0001t0001g0077 a0001c0001t0001g0080 a0001c0001t0001g0083 a0001c0001t0001g0084 a0001c0001t0001g0085 a0001c0001t0001g0090 a0001c0001t0001g0091 a0001c0001t0001g0092 a0001c0001t0001g0094 a0001c0001t0001g0100 a0001c0001t0001g0111 a0001c0001t0001g0113 a0001c0001t0001g0117 a0001c0001t0001g0118 a0001c0001t0001g0119 a0001c0001t0001g0120 a0001c0001t0001g0122 a0001c0001t0001g0123 a0001c0001t0001g0124 a0001c0001t0001g0125 a0001c0001t0001g0130 a0001c0001t0001g0131 a0001c0001t0001g0132 a0001c0001t0001g0133 a0001c0001t0001g0135 a0001c0001t0001g0138 a0001c0001t0001g0139 a0001c0001t0001g0146 a0001c0001t0001g0148 a0001c0001t0001g0149 a0001c0001t0001g0161 a0001c0001t0001g0257 a0001c0001t0001g0259 a0001c0001t0001g0348 a0001c0001t0006g0194 a0001c0001t0007g0059 a0001c0001t0007g0078 a0001c0001t0007g0106 a0001c0001t0007g0107 a0001c0001t0007g0108 a0001c0001t0007g0109 a0001c0001t0007g0110 a0001c0001t0007g0112 a0001c0001t0007g0114 a0001c0001t0007g0115 a0001c0001t0011g0126 a0001c0001t0013g0081 a0001c0001t0013g0082 a0001c0001t0013g0093 a0001c0001t0013g0097 a0001c0001t0013g0098 a0001c0001t0018g0079 a0001c0001t0018g0104 a0001c0001t0019g0087 a0001c0001t0019g0127 a0001c0001t0019g0128 a0001c0001t0022g0170 a0001c0001t0022g0171 a0001c0001t0026g0129 a0001c0001t0027g0137 a0001c0001t0027g0140 a0001c0001t0030g0070 a0001c0001t0030g0145 a0001c0001t0032g0076 a0001c0001t0032g0099 a0001c0001t0033g0134 a0001c0001t0038g0275 a0001c0001t0062g0089 a0001c0001t0065g0068 a0001c0001t0069g0263 a0001c0001t0073g0088	90	349	0.2579	35	c.148 others(52): Show c.1485+244_1485+278dupAATTTATATATATAAATTTTTATATATT ATATATA		ZYG11B	ENSG00000162378.13	transcript	ENST00000294353.7	protein_coding	8/13					INFO_REALIGN_3_PRIME	chr1	TogoVar