Joint Open Genome and Omics Platform (JoGo)

Search by Variant

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Chr

Chromosome name (e.g., chr11).

Snpeff genename

Exact SnpEff gene name.

Sampleids

Target sampleid (e.g. HG02615).

Snpeff haplotype class

Haplotype-annotation class (e.g., ahapid, ahapid+chapid).

Snpeff annotation impact

Exact impact level (e.g., HIGH, MODERATE, LOW).

Snpeff annotation impact detail

Keyword match in SnpEff annotation.

Hapid

One or more haplotype IDs (comma-separated; e.g., a0001, a01, a0001c0001, a01c02, a1c2, a0001c0001t0005, a0001c0001t0005g0018).

Samplehapid

Sample haplotype IDs to include (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

No_hapid

Haplotype IDs to exclude (comma-separated; e.g., a0001, a0002, a0001c0001, a0001c0001t0005, a1, a01).

No_samplehapid

Sample haplotype IDs to exclude (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

Start

Start position (GRCh38).

End

End position (GRCh38).

Minac

Minimum alternate allele count (≥).

Maxac

Maximum alternate allele count (≤).

Minlen

Minimum variant length (≥).

Maxlen

Maximum variant length (≤).

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regionname	pos	ref	alt	annotation	impact	samples	ahapids	achapids	acthapids	actghapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	external
STAG1_chr3_136331236_136757378	136565011	A A	AAGGAAGG others(29): Show AAGGAAGGAAGGAAGGAAGGAAGGAAGGCAGGCAGGC	intron_variant intron_variant	MODIFIER	HG01074.hp1 NA20752.hp1 HG01074.hp1 NA20752.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0002 a0001c0002t0002	a0001c0002t0002g0110 a0001c0002t0002g0112 a0001c0002t0002g0110 a0001c0002t0002g0112	2	240	0.0083	36	c.394 others(53): Show c.394+3753_394+3754insGCCTGCCTGCCTTCCTTCCTTCCTTCCT TCCTTCCT	STAG1	ENSG00000118007.13	transcript	ENST00000383202.7	protein_coding	5/33			chr3	TogoVar
STAG1_chr3_136331236_136757378	136565011	A A	AAGGAAGG others(29): Show AAGGAAGGAAGGAAGGAAGGCAGGCAGGCAGGCAGGC	intron_variant intron_variant	MODIFIER	HG02965.hp1 HG02965.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0002 a0001c0002t0002	a0001c0002t0002g0188 a0001c0002t0002g0188	1	240	0.0042	36	c.394 others(53): Show c.394+3753_394+3754insGCCTGCCTGCCTGCCTGCCTTCCTTCCT TCCTTCCT	STAG1	ENSG00000118007.13	transcript	ENST00000383202.7	protein_coding	5/33			chr3	TogoVar
STAG1_chr3_136331236_136757378	136565011	A A	AAGGAAGG others(29): Show AAGGAAGGAAGGAAGGCAGGCAGGCAGGCAGGCAGGC	intron_variant intron_variant	MODIFIER	HG01243.hp1 HG02451.hp1 HG02818.hp1 others(5): Show HG01243.hp1 HG02451.hp1 HG02818.hp1 HG03471.hp1 HG03927.hp1 NA18522.hp2 NA20129.hp1 NA21309.hp1	a0001 a0002 a0001 a0002	a0001c0006 a0002c0003 a0001c0006 a0002c0003	a0001c0006t0005 a0002c0003t0002 a0002c0003t0008 a0001c0006t0005 a0002c0003t0002 a0002c0003t0008	a0001c0006t0005g0178 a0002c0003t0002g0139 a0002c0003t0002g0140 others(5): Show a0001c0006t0005g0178 a0002c0003t0002g0139 a0002c0003t0002g0140 a0002c0003t0002g0141 a0002c0003t0002g0142 a0002c0003t0002g0144 a0002c0003t0002g0149 a0002c0003t0008g0151	8	240	0.0333	36	c.394 others(53): Show c.394+3753_394+3754insGCCTGCCTGCCTGCCTGCCTGCCTTCCT TCCTTCCT	STAG1	ENSG00000118007.13	transcript	ENST00000383202.7	protein_coding	5/33			chr3	TogoVar
STAG1_chr3_136331236_136757378	136565011	A A	AAGGAAGG others(29): Show AAGGAAGGAAGGCAGGCAGGCAGGCAGGCAGGCAGGC	intron_variant intron_variant	MODIFIER	HG00735.hp2 HG00735.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0005 a0001c0002t0005	a0001c0002t0005g0235 a0001c0002t0005g0235	1	240	0.0042	36	c.394 others(53): Show c.394+3753_394+3754insGCCTGCCTGCCTGCCTGCCTGCCTGCCT TCCTTCCT	STAG1	ENSG00000118007.13	transcript	ENST00000383202.7	protein_coding	5/33			chr3	TogoVar
STAG1_chr3_136331236_136757378	136565011	A A	AAGGAAGG others(29): Show AAGGAAGGCAGGCAGGCAGGCAGGCAGGCAGGCAGGC	intron_variant intron_variant	MODIFIER	HG03516.hp2 HG03516.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0002 a0001c0002t0002	a0001c0002t0002g0006 a0001c0002t0002g0006	1	240	0.0042	36	c.394 others(53): Show c.394+3753_394+3754insGCCTGCCTGCCTGCCTGCCTGCCTGCCT GCCTTCCT	STAG1	ENSG00000118007.13	transcript	ENST00000383202.7	protein_coding	5/33			chr3	TogoVar
STAG1_chr3_136331236_136757378	136656617	T T	TTGTGTGT others(29): Show TTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG	intron_variant intron_variant	MODIFIER	NA21309.hp1 NA21309.hp1	a0002 a0002	a0002c0003 a0002c0003	a0002c0003t0002 a0002c0003t0002	a0002c0003t0002g0149 a0002c0003t0002g0149	1	240	0.0042	36	c.-83 others(55): Show c.-83-25637_-83-25636insCACACACACACACACACACACACACA CACACACACA	STAG1	ENSG00000118007.13	transcript	ENST00000383202.7	protein_coding	1/33			chr3	TogoVar
STAG1_chr3_136331236_136757378	136666074	C C	CAAAAAAA others(29): Show CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG04228.hp2 HG04228.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0057 a0001c0001t0001g0057	1	240	0.0042	36	c.-83 others(55): Show c.-83-35129_-83-35094dupTTTTTTTTTTTTTTTTTTTTTTTTTT TTTTTTTTTT	STAG1	ENSG00000118007.13	transcript	ENST00000383202.7	protein_coding	1/33			chr3	TogoVar
STAM2_chr2_152111801_152180763	152159094	C C	CATATATA others(29): Show CATATATATATATATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG00741.hp2 HG01069.hp2 HG01070.hp1 others(11): Show HG00741.hp2 HG01069.hp2 HG01070.hp1 HG01071.hp1 HG01891.hp2 HG01975.hp1 HG01978.hp1 HG02258.hp1 HG02976.hp1 HG03927.hp1 NA18948.hp2 NA18983.hp1 NA19089.hp1 NA19090.hp1	a0001 a0001	a0001c0001 a0001c0004 a0001c0001 a0001c0004	a0001c0001t0003 a0001c0001t0004 a0001c0001t0017 others(5): Show a0001c0001t0003 a0001c0001t0004 a0001c0001t0017 a0001c0001t0019 a0001c0001t0034 a0001c0001t0039 a0001c0001t0048 a0001c0004t0018	a0001c0001t0003g0202 a0001c0001t0003g0203 a0001c0001t0003g0220 others(10): Show a0001c0001t0003g0202 a0001c0001t0003g0203 a0001c0001t0003g0220 a0001c0001t0003g0228 a0001c0001t0004g0014 a0001c0001t0017g0204 a0001c0001t0017g0222 a0001c0001t0019g0157 a0001c0001t0019g0175 a0001c0001t0034g0200 a0001c0001t0039g0199 a0001c0001t0048g0201 a0001c0004t0018g0176	14	360	0.0389	36	c.41- others(51): Show c.41-8866_41-8865insATATATATATATATATATATATATATATAT ATATAT	STAM2	ENSG00000115145.10	transcript	ENST00000263904.5	protein_coding	1/13			chr2	TogoVar
STAM_chr10_17639151_17721824	17639402	A A	ATTTTTTT others(29): Show ATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02738.hp1 HG02738.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0003 a0001c0002t0003	a0001c0002t0003g0171 a0001c0002t0003g0171	1	426	0.0024	36	c.-49 others(47): Show c.-4938_-4937insTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT TT	STAM	ENSG00000136738.15	transcript	ENST00000377524.8	protein_coding		4748		chr10	TogoVar
STARD10_chr11_72749729_72799047	72772238	C C	CCCCTGTG others(29): Show CCCCTGTGCCCGGTGCTGCCATAGTGGGCACGGTTCT	intron_variant intron_variant	MODIFIER	HG00099.hp1 HG00323.hp1 HG00323.hp2 others(26): Show HG00099.hp1 HG00323.hp1 HG00323.hp2 HG00544.hp2 HG00558.hp2 HG01243.hp2 HG01255.hp1 HG01257.hp2 HG01258.hp1 HG01346.hp2 HG01496.hp1 HG01934.hp1 HG01952.hp2 HG02074.hp1 HG02132.hp2 HG02698.hp2 HG02965.hp2 HG03017.hp1 HG03654.hp2 HG03688.hp1 HG03710.hp1 HG03831.hp2 HG03834.hp1 NA18940.hp2 NA18968.hp2 NA18970.hp1 NA18997.hp1 NA19006.hp1 NA19063.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0004 others(1): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0004 a0001c0001t0014	a0001c0001t0001g0264 a0001c0001t0002g0056 a0001c0001t0002g0083 others(21): Show a0001c0001t0001g0264 a0001c0001t0002g0056 a0001c0001t0002g0083 a0001c0001t0004g0006 a0001c0001t0004g0033 a0001c0001t0004g0035 a0001c0001t0004g0293 a0001c0001t0004g0294 a0001c0001t0004g0295 a0001c0001t0004g0296 a0001c0001t0004g0297 a0001c0001t0004g0298 a0001c0001t0004g0301 a0001c0001t0004g0302 a0001c0001t0004g0303 a0001c0001t0004g0304 a0001c0001t0004g0305 a0001c0001t0004g0306 a0001c0001t0004g0307 a0001c0001t0004g0308 a0001c0001t0004g0309 a0001c0001t0004g0310 a0001c0001t0004g0311 a0001c0001t0014g0118	29	376	0.0771	36	c.207 others(53): Show c.207+8701_207+8736dupAGAACCGTGCCCACTATGGCAGCACCGG GCACAGGG	STARD10	ENSG00000214530.10	transcript	ENST00000334805.11	protein_coding	2/6			chr11	TogoVar
STARD3_chr17_39632144_39669201	39662971	G G	GTGCCAGT others(29): Show GTGCCAGTTGGGCTCGCACTGCCCCTCGGGACTCATC	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	NA18957.hp2 NA18957.hp2	a0005 a0005	a0005c0008 a0005c0008	a0005c0008t0016 a0005c0008t0016	a0005c0008t0016g0087 a0005c0008t0016g0087	1	316	0.0032	36	c.86 others(43): Show c.86_*87insCTCGGGACTCATCTGCCAGTTGGGCTCGCACTGCCC	STARD3	ENSG00000131748.16	transcript	ENST00000336308.10	protein_coding	15/15	87	INFO_REALIGN_3_PRIME	chr17	TogoVar
STAT2_chr12_56336597_56365107	56345524	A A	AAAAAATA others(29): Show AAAAAATATATATATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG02647.hp1 HG02647.hp1	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0001 a0002c0002t0001	a0002c0002t0001g0045 a0002c0002t0001g0045	1	268	0.0037	36	c.210 others(53): Show c.2102+621_2102+622insATATATATATATATATATATATATATAT ATATTTTT	STAT2	ENSG00000170581.15	transcript	ENST00000314128.9	protein_coding	22/23			chr12	TogoVar
STAT2_chr12_56336597_56365107	56354010	A A	AATATATA others(29): Show AATATATATATATATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	NA19081.hp2 NA19081.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0162 a0001c0001t0001g0162	1	268	0.0037	36	c.782 others(51): Show c.782+455_782+456insATATATATATATATATATATATATATATAT ATATAT	STAT2	ENSG00000170581.15	transcript	ENST00000314128.9	protein_coding	8/23			chr12	TogoVar
STAT2_chr12_56336597_56365107	56354014	A A	AATATATA others(29): Show AATATATATATATATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG01361.hp1 NA18944.hp1 HG01361.hp1 NA18944.hp1	a0001 a0004 a0001 a0004	a0001c0001 a0004c0005 a0001c0001 a0004c0005	a0001c0001t0001 a0004c0005t0001 a0001c0001t0001 a0004c0005t0001	a0001c0001t0001g0166 a0004c0005t0001g0098 a0001c0001t0001g0166 a0004c0005t0001g0098	2	268	0.0075	36	c.782 others(51): Show c.782+451_782+452insATATATATATATATATATATATATATATAT ATATAT	STAT2	ENSG00000170581.15	transcript	ENST00000314128.9	protein_coding	8/23			chr12	TogoVar
STAT2_chr12_56336597_56365107	56354016	A A	AAAAAAAA others(29): Show AAAAAAAATATATATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG01496.hp1 HG01496.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0176 a0001c0001t0001g0176	1	268	0.0037	36	c.782 others(51): Show c.782+449_782+450insATATATATATATATATATATATATATATAT TTTTTT	STAT2	ENSG00000170581.15	transcript	ENST00000314128.9	protein_coding	8/23			chr12	TogoVar
STAT2_chr12_56336597_56365107	56354016	A A	AAAATATA others(29): Show AAAATATATATATATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG02148.hp2 HG02148.hp2	a0004 a0004	a0004c0005 a0004c0005	a0004c0005t0001 a0004c0005t0001	a0004c0005t0001g0085 a0004c0005t0001g0085	1	268	0.0037	36	c.782 others(51): Show c.782+449_782+450insATATATATATATATATATATATATATATAT ATATTT	STAT2	ENSG00000170581.15	transcript	ENST00000314128.9	protein_coding	8/23			chr12	TogoVar
STAT2_chr12_56336597_56365107	56354016	A A	AATATATA others(29): Show AATATATATATATATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG01943.hp2 HG01943.hp2	a0004 a0004	a0004c0005 a0004c0005	a0004c0005t0001 a0004c0005t0001	a0004c0005t0001g0096 a0004c0005t0001g0096	1	268	0.0037	36	c.782 others(51): Show c.782+449_782+450insATATATATATATATATATATATATATATAT ATATAT	STAT2	ENSG00000170581.15	transcript	ENST00000314128.9	protein_coding	8/23			chr12	TogoVar
STAU1_chr20_49108339_49193334	49108487	T T	TACACACA others(29): Show TACACACACACACACACACACACACACACACACACAC	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01943.hp2 HG01943.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0004	a0001c0001t0004g0094 a0001c0001t0004g0094	1	366	0.0027	36	c.63 others(47): Show c.6390_*6391insGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT GT	STAU1	ENSG00000124214.21	transcript	ENST00000371856.7	protein_coding		4851		chr20	TogoVar
STAU2_chr8_73415369_73751840	73720499	C C	CTTTTTTT others(29): Show CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG02622.hp2 HG02622.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0001 a0002c0002t0001	a0002c0002t0001g0064 a0002c0002t0001g0064	1	240	0.0042	36	c.-17 others(55): Show c.-17-11338_-17-11337insAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAA	STAU2	ENSG00000040341.18	transcript	ENST00000524300.6	protein_coding	3/14			chr8	TogoVar
STEAP1B_chr7_22414444_22505188	22454607	G G	GAGAGGCT others(29): Show GAGAGGCTGCACATGCTGCAGTAGCTGGAGAAGCCAT	intron_variant intron_variant	MODIFIER	NA18994.hp2 NA18994.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0001 a0002c0002t0001	a0002c0002t0001g0282 a0002c0002t0001g0282	1	384	0.0026	36	c.763 others(55): Show c.763-34772_763-34771insATGGCTTCTCCAGCTACTGCAGCATG TGCAGCCTCT	STEAP1B	ENSG00000105889.16	transcript	ENST00000678116.1	protein_coding	4/4			chr7	TogoVar
STEAP1B_chr7_22414444_22505188	22456972	A A	ATATATAT others(29): Show ATATATATATATATATATATATATATTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	NA19003.hp1 NA19003.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0043 a0001c0001t0002g0043	1	384	0.0026	36	c.762 others(55): Show c.762+35592_762+35593insAAAAAAAAAAAATATATATATATATA TATATATATA	STEAP1B	ENSG00000105889.16	transcript	ENST00000678116.1	protein_coding	4/4			chr7	TogoVar
STEAP1B_chr7_22414444_22505188	22456972	A A	ATATATAT others(29): Show ATATATATATATATATATATATATTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG03453.hp2 NA18944.hp1 HG03453.hp2 NA18944.hp1	a0002 a0003 a0002 a0003	a0002c0002 a0003c0003 a0002c0002 a0003c0003	a0002c0002t0002 a0003c0003t0002 a0002c0002t0002 a0003c0003t0002	a0002c0002t0002g0320 a0003c0003t0002g0379 a0002c0002t0002g0320 a0003c0003t0002g0379	2	384	0.0052	36	c.762 others(55): Show c.762+35592_762+35593insAAAAAAAAAAAAAATATATATATATA TATATATATA	STEAP1B	ENSG00000105889.16	transcript	ENST00000678116.1	protein_coding	4/4			chr7	TogoVar
STEAP1B_chr7_22414444_22505188	22456972	A A	ATATATAT others(29): Show ATATATATATATATATATTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	NA18979.hp1 NA19062.hp1 NA18979.hp1 NA19062.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0087 a0001c0001t0001g0115 a0001c0001t0001g0087 a0001c0001t0001g0115	2	384	0.0052	36	c.762 others(55): Show c.762+35592_762+35593insAAAAAAAAAAAAAAAAAAAATATATA TATATATATA	STEAP1B	ENSG00000105889.16	transcript	ENST00000678116.1	protein_coding	4/4			chr7	TogoVar
STEAP1B_chr7_22414444_22505188	22464948	C C	CATATATA others(29): Show CATATATATATATATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG00280.hp1 HG00642.hp2 HG01192.hp1 others(9): Show HG00280.hp1 HG00642.hp2 HG01192.hp1 HG01257.hp1 HG01884.hp2 HG02559.hp1 HG02723.hp2 HG03834.hp1 HG03942.hp2 NA18612.hp2 NA18747.hp1 NA20752.hp1	a0001 a0002 a0003 others(2): Show a0001 a0002 a0003 a0004 a0005	a0001c0001 a0002c0002 a0003c0003 others(2): Show a0001c0001 a0002c0002 a0003c0003 a0004c0004 a0005c0005	a0001c0001t0001 a0001c0001t0002 a0002c0002t0001 others(4): Show a0001c0001t0001 a0001c0001t0002 a0002c0002t0001 a0002c0002t0002 a0003c0003t0001 a0004c0004t0001 a0005c0005t0001	a0001c0001t0001g0030 a0001c0001t0001g0045 a0001c0001t0001g0055 others(8): Show a0001c0001t0001g0030 a0001c0001t0001g0045 a0001c0001t0001g0055 a0001c0001t0002g0003 a0001c0001t0002g0153 a0002c0002t0001g0291 a0002c0002t0002g0002 a0003c0003t0001g0191 a0003c0003t0001g0370 a0004c0004t0001g0335 a0005c0005t0001g0345	12	384	0.0313	36	c.762 others(55): Show c.762+27616_762+27617insATATATATATATATATATATATATAT ATATATATAT	STEAP1B	ENSG00000105889.16	transcript	ENST00000678116.1	protein_coding	4/4			chr7	TogoVar
STIM2_chr4_26855841_27030381	26885859	A A	ATATATAT others(29): Show ATATATATATGTATATATATATATATATATATATATG	intron_variant intron_variant	MODIFIER	HG03491.hp1 NA19074.hp2 HG03491.hp1 NA19074.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0001 a0001c0001t0002	a0001c0001t0001g0013 a0001c0001t0002g0066 a0001c0001t0001g0013 a0001c0001t0002g0066	2	336	0.0060	36	c.151 others(55): Show c.151+24499_151+24500insGTATATATATATATATATATATATAT GTATATATAT	STIM2	ENSG00000109689.20	transcript	ENST00000467087.7	protein_coding	1/11		INFO_REALIGN_3_PRIME	chr4	TogoVar
STIM2_chr4_26855841_27030381	26885859	A A	ATATATAT others(29): Show ATATATATGTATATATATATATATATATATATATATG	intron_variant intron_variant	MODIFIER	HG00544.hp1 HG00544.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0005 a0001c0001t0005	a0001c0001t0005g0067 a0001c0001t0005g0067	1	336	0.0030	36	c.151 others(55): Show c.151+24497_151+24498insGTATATATATATATATATATATATAT ATGTATATAT	STIM2	ENSG00000109689.20	transcript	ENST00000467087.7	protein_coding	1/11		INFO_REALIGN_3_PRIME	chr4	TogoVar
STK10_chr5_172037079_172193224	172089399	T T	TGGATGGA others(29): Show TGGATGGATGGATGGATGGATGGATGGATGGATGGAA	intron_variant intron_variant	MODIFIER	HG02055.hp2 HG02055.hp2	a0001 a0001	a0001c0007 a0001c0007	a0001c0007t0002 a0001c0007t0002	a0001c0007t0002g0226 a0001c0007t0002g0226	1	232	0.0043	36	c.168 others(53): Show c.1685+832_1685+833insTTCCATCCATCCATCCATCCATCCATCC ATCCATCC	STK10	ENSG00000072786.13	transcript	ENST00000176763.10	protein_coding	10/18			chr5	TogoVar
STK10_chr5_172037079_172193224	172089407	T T	TGGATGGA others(29): Show TGGATGGATGGATGGATGGATGGATGGATGGATGGAA	intron_variant intron_variant	MODIFIER	HG02896.hp1 HG02976.hp2 NA19240.hp1 others(1): Show HG02896.hp1 HG02976.hp2 NA19240.hp1 NA19240.hp2	a0001 a0004 a0001 a0004	a0001c0006 a0001c0030 a0001c0031 others(1): Show a0001c0006 a0001c0030 a0001c0031 a0004c0018	a0001c0006t0011 a0001c0030t0001 a0001c0031t0014 others(1): Show a0001c0006t0011 a0001c0030t0001 a0001c0031t0014 a0004c0018t0041	a0001c0006t0011g0082 a0001c0030t0001g0056 a0001c0031t0014g0135 others(1): Show a0001c0006t0011g0082 a0001c0030t0001g0056 a0001c0031t0014g0135 a0004c0018t0041g0044	4	232	0.0172	36	c.168 others(53): Show c.1685+824_1685+825insTTCCATCCATCCATCCATCCATCCATCC ATCCATCC	STK10	ENSG00000072786.13	transcript	ENST00000176763.10	protein_coding	10/18			chr5	TogoVar
STK10_chr5_172037079_172193224	172089415	T T	TGGATGGA others(29): Show TGGATGGATGGATGGATGGATGGATGGATGGATGGAA	intron_variant intron_variant	MODIFIER	HG02258.hp1 HG03579.hp2 HG02258.hp1 HG03579.hp2	a0001 a0001	a0001c0003 a0001c0004 a0001c0003 a0001c0004	a0001c0003t0020 a0001c0004t0038 a0001c0003t0020 a0001c0004t0038	a0001c0003t0020g0003 a0001c0004t0038g0216 a0001c0003t0020g0003 a0001c0004t0038g0216	2	232	0.0086	36	c.168 others(53): Show c.1685+816_1685+817insTTCCATCCATCCATCCATCCATCCATCC ATCCATCC	STK10	ENSG00000072786.13	transcript	ENST00000176763.10	protein_coding	10/18			chr5	TogoVar
STK24_chr13_98440185_98582107	98494412	C C	CAAAAAAA others(29): Show CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	NA18522.hp1 NA20129.hp2 NA18522.hp1 NA20129.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0045 a0001c0001t0046 a0001c0001t0045 a0001c0001t0046	a0001c0001t0045g0015 a0001c0001t0046g0265 a0001c0001t0045g0015 a0001c0001t0046g0265	2	322	0.0062	36	c.274 others(55): Show c.274-12092_274-12091insTTTTTTTTTTTTTTTTTTTTTTTTTT TTTTTTTTTT	STK24	ENSG00000102572.15	transcript	ENST00000539966.6	protein_coding	2/10			chr13	TogoVar
STK31_chr7_23705219_23837513	23730878	A A	ATATATAT others(29): Show ATATATATATATATATATATATATATATATATTTTTT	intron_variant intron_variant	MODIFIER	NA19086.hp1 NA19086.hp1	a0003 a0003	a0003c0003 a0003c0003	a0003c0003t0001 a0003c0003t0001	a0003c0003t0001g0152 a0003c0003t0001g0152	1	404	0.0025	36	c.483 others(53): Show c.483+1630_483+1631insATATATATATATATATATATATATATAT ATTTTTTT	STK31	ENSG00000196335.13	transcript	ENST00000355870.8	protein_coding	6/23		INFO_REALIGN_3_PRIME	chr7	TogoVar
STK31_chr7_23705219_23837513	23730878	A A	ATATATAT others(29): Show ATATATATATATATATATATATTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	NA19059.hp1 NA19059.hp1	a0003 a0003	a0003c0003 a0003c0003	a0003c0003t0001 a0003c0003t0001	a0003c0003t0001g0158 a0003c0003t0001g0158	1	404	0.0025	36	c.483 others(53): Show c.483+1630_483+1631insATATATATATATATATATATTTTTTTTT TTTTTTTT	STK31	ENSG00000196335.13	transcript	ENST00000355870.8	protein_coding	6/23		INFO_REALIGN_3_PRIME	chr7	TogoVar
STK31_chr7_23705219_23837513	23808970	T T	TGTGTGTG others(29): Show TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGC	intron_variant intron_variant	MODIFIER	HG02698.hp2 HG02698.hp2	a0003 a0003	a0003c0003 a0003c0003	a0003c0003t0001 a0003c0003t0001	a0003c0003t0001g0014 a0003c0003t0001g0014	1	404	0.0025	36	c.276 others(55): Show c.2761-6173_2761-6172insTGTGTGTGTGTGTGTGTGTGTGTGTG TGTGTGTGCG	STK31	ENSG00000196335.13	transcript	ENST00000355870.8	protein_coding	22/23		INFO_REALIGN_3_PRIME	chr7	TogoVar
STK32B_chr4_5046480_5505989	5064462	C C	CATATAAT others(29): Show CATATAATATATAAATATATACTTATGTTATATACAT	intron_variant intron_variant	MODIFIER	HG02886.hp1 HG03471.hp2 HG02886.hp1 HG03471.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0014 a0001c0001t0001 a0001c0001t0014	a0001c0001t0001g0063 a0001c0001t0014g0148 a0001c0001t0001g0063 a0001c0001t0014g0148	2	170	0.0118	36	c.52+ others(53): Show c.52+12573_52+12608dupGTTATATACATATATAATATATAAATAT ATACTTAT	STK32B	ENSG00000152953.13	transcript	ENST00000282908.10	protein_coding	1/11		INFO_REALIGN_3_PRIME	chr4	TogoVar
STK32B_chr4_5046480_5505989	5159656	T T	TATATGAA others(29): Show TATATGAATATATGAATGTATATGAATATATATATGA	intron_variant intron_variant	MODIFIER	NA20129.hp1 NA20129.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0136 a0001c0001t0001g0136	1	170	0.0059	36	c.109 others(53): Show c.109-8639_109-8638insGAATATATGAATGTATATGAATATATAT ATGAATAT	STK32B	ENSG00000152953.13	transcript	ENST00000282908.10	protein_coding	2/11		INFO_REALIGN_3_PRIME	chr4	TogoVar
STK32B_chr4_5046480_5505989	5316345	T T	TATATCAT others(29): Show TATATCATATATTATATATTATATACAATATAATATA	intron_variant intron_variant	MODIFIER	HG01891.hp1 HG02559.hp2 HG01891.hp1 HG02559.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0010 a0001c0001t0012 a0001c0001t0010 a0001c0001t0012	a0001c0001t0010g0004 a0001c0001t0012g0072 a0001c0001t0010g0004 a0001c0001t0012g0072	2	170	0.0118	36	c.261 others(55): Show c.261-14857_261-14856insTATATACAATATAATATAATATCATA TATTATATAT	STK32B	ENSG00000152953.13	transcript	ENST00000282908.10	protein_coding	3/11		INFO_REALIGN_3_PRIME	chr4	TogoVar
STK32B_chr4_5046480_5505989	5317196	T T	TATATTAT others(29): Show TATATTATATATATAACATATATATAATATATATAAC	intron_variant intron_variant	MODIFIER	HG02809.hp1 NA18966.hp1 NA19088.hp2 HG02809.hp1 NA18966.hp1 NA19088.hp2	a0002 a0002	a0002c0004 a0002c0004	a0002c0004t0003 a0002c0004t0009 a0002c0004t0003 a0002c0004t0009	a0002c0004t0003g0028 a0002c0004t0003g0050 a0002c0004t0009g0075 a0002c0004t0003g0028 a0002c0004t0003g0050 a0002c0004t0009g0075	3	170	0.0177	36	c.261 others(55): Show c.261-14020_261-14019insTATATATATAACATATATATAATATA TATAACATAT	STK32B	ENSG00000152953.13	transcript	ENST00000282908.10	protein_coding	3/11		INFO_REALIGN_3_PRIME	chr4	TogoVar
STK32C_chr10_132202492_132312950	132284404	G G	GGGGCAGG others(29): Show GGGGCAGGTGAGGTTGGGGGGGCAGGTGAGGTTGGGA	intron_variant intron_variant	MODIFIER	HG02976.hp2 HG03195.hp1 HG03225.hp2 others(1): Show HG02976.hp2 HG03195.hp1 HG03225.hp2 NA19240.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0001 a0001c0002t0002 a0001c0001t0001 a0001c0002t0002	a0001c0001t0001g0092 a0001c0001t0001g0344 a0001c0001t0001g0346 others(1): Show a0001c0001t0001g0092 a0001c0001t0001g0344 a0001c0001t0001g0346 a0001c0002t0002g0345	4	368	0.0109	36	c.262 others(55): Show c.262+23132_262+23167dupTCCCAACCTCACCTGCCCCCCCAACC TCACCTGCCC	STK32C	ENSG00000165752.17	transcript	ENST00000298630.8	protein_coding	1/11			chr10	TogoVar
STK32C_chr10_132202492_132312950	132284406	G G	GGCAGGTG others(29): Show GGCAGGTGAGGTTGGGGGGGCAGGTGAGGTTGGGAGA	intron_variant intron_variant	MODIFIER	NA18906.hp2 NA18906.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0347 a0001c0001t0001g0347	1	368	0.0027	36	c.262 others(55): Show c.262+23165_262+23166insTCTCCCAACCTCACCTGCCCCCCCAA CCTCACCTGC	STK32C	ENSG00000165752.17	transcript	ENST00000298630.8	protein_coding	1/11			chr10	TogoVar
STK33_chr11_8386870_8599228	8439869	T T	TTATATAT others(29): Show TTATATATATATATATATATATATATATATATATATA	intron_variant intron_variant	MODIFIER	HG01975.hp2 HG02056.hp2 HG02165.hp1 others(10): Show HG01975.hp2 HG02056.hp2 HG02165.hp1 HG03540.hp1 NA18940.hp2 NA18962.hp2 NA18975.hp1 NA18979.hp2 NA18982.hp1 NA19057.hp1 NA19081.hp1 NA19085.hp2 NA19091.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0005 a0001c0002t0006 others(1): Show a0001c0002t0001 a0001c0002t0005 a0001c0002t0006 a0001c0002t0007	a0001c0002t0001g0177 a0001c0002t0001g0185 a0001c0002t0001g0187 others(10): Show a0001c0002t0001g0177 a0001c0002t0001g0185 a0001c0002t0001g0187 a0001c0002t0001g0188 a0001c0002t0001g0201 a0001c0002t0001g0209 a0001c0002t0001g0275 a0001c0002t0001g0292 a0001c0002t0001g0316 a0001c0002t0005g0171 a0001c0002t0005g0250 a0001c0002t0006g0195 a0001c0002t0007g0255	13	334	0.0389	36	c.947 others(51): Show c.947+808_947+809insTATATATATATATATATATATATATATATA TATATA	STK33	ENSG00000130413.16	transcript	ENST00000687296.1	protein_coding	12/15			chr11	TogoVar
STK38L_chr12_27239286_27330959	27306714	A A	AACACACA others(29): Show AACACACACACACACACACACACACACACACACACAC	intron_variant intron_variant	MODIFIER	HG02155.hp1 HG02155.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0159 a0001c0001t0001g0159	1	374	0.0027	36	c.187 others(53): Show c.187-1621_187-1586dupCACACACACACACACACACACACACACA CACACACA	STK38L	ENSG00000211455.8	transcript	ENST00000389032.8	protein_coding	3/13		INFO_REALIGN_3_PRIME	chr12	TogoVar
STK39_chr2_167949022_168252595	168139408	T T	TTATATAT others(29): Show TTATATATATATATATATATATATAAATATATATATA	intron_variant intron_variant	MODIFIER	HG02622.hp2 HG02622.hp2	a0001 a0001	a0001c0006 a0001c0006	a0001c0006t0011 a0001c0006t0011	a0001c0006t0011g0128 a0001c0006t0011g0128	1	270	0.0037	36	c.840 others(51): Show c.840+880_840+881insTATATATATATTTATATATATATATATATA TATATA	STK39	ENSG00000198648.12	transcript	ENST00000355999.5	protein_coding	7/17			chr2	TogoVar
STK4_chr20_44961512_45085021	45080243	A A	ATAGCAGG others(29): Show ATAGCAGGGCATGTGACAGAAAGTTGAAAGGACTTCC	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02809.hp2 HG02809.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0019 a0001c0001t0019	a0001c0001t0019g0177 a0001c0001t0019g0177	1	328	0.0031	36	c.50 others(47): Show c.5067_*5068insTAGCAGGGCATGTGACAGAAAGTTGAAAGGACTT CC	STK4	ENSG00000101109.13	transcript	ENST00000372806.8	protein_coding		223		chr20	TogoVar
STN1_chr10_103872569_103923184	103875859	G G	GTCTCTCT others(29): Show GTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01993.hp2 HG03486.hp1 NA18954.hp2 others(1): Show HG01993.hp2 HG03486.hp1 NA18954.hp2 NA18985.hp2	a0001 a0003 a0001 a0003	a0001c0001 a0003c0004 a0001c0001 a0003c0004	a0001c0001t0005 a0001c0001t0016 a0001c0001t0043 others(1): Show a0001c0001t0005 a0001c0001t0016 a0001c0001t0043 a0003c0004t0005	a0001c0001t0005g0319 a0001c0001t0016g0332 a0001c0001t0043g0092 others(1): Show a0001c0001t0005g0319 a0001c0001t0016g0332 a0001c0001t0043g0092 a0003c0004t0005g0318	4	382	0.0105	36	c.68 others(47): Show c.6824_*6825insGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA GA	STN1	ENSG00000107960.12	transcript	ENST00000224950.8	protein_coding		1709		chr10	TogoVar
STN1_chr10_103872569_103923184	103909400	A A	ATATATGT others(29): Show ATATATGTATATATATGTATATATGTATATATATGTG	intron_variant intron_variant	MODIFIER	HG01175.hp1 HG01891.hp1 HG02622.hp2 others(10): Show HG01175.hp1 HG01891.hp1 HG02622.hp2 HG02886.hp2 HG02922.hp2 HG03041.hp1 HG03098.hp1 HG03195.hp2 HG03225.hp1 HG03471.hp1 HG03540.hp1 HG03540.hp2 NA20300.hp2	a0001 a0004 a0001 a0004	a0001c0001 a0004c0006 a0001c0001 a0004c0006	a0001c0001t0008 a0001c0001t0019 a0004c0006t0008 others(1): Show a0001c0001t0008 a0001c0001t0019 a0004c0006t0008 a0004c0006t0056	a0001c0001t0008g0033 a0001c0001t0008g0306 a0001c0001t0008g0307 others(9): Show a0001c0001t0008g0033 a0001c0001t0008g0306 a0001c0001t0008g0307 a0001c0001t0008g0309 a0001c0001t0008g0310 a0001c0001t0008g0311 a0001c0001t0008g0312 a0001c0001t0008g0315 a0001c0001t0019g0304 a0001c0001t0019g0305 a0004c0006t0008g0314 a0004c0006t0056g0313	13	382	0.0340	36	c.229 others(53): Show c.229+1126_229+1127insCACATATATATACATATATACATATATA TACATATA	STN1	ENSG00000107960.12	transcript	ENST00000224950.8	protein_coding	3/9			chr10	TogoVar
STOM_chr9_121333987_121375250	121357424	G G	GATATATA others(29): Show GATATATATATATATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG01069.hp2 HG01934.hp1 HG01934.hp2 others(5): Show HG01069.hp2 HG01934.hp1 HG01934.hp2 HG01943.hp1 HG02056.hp1 HG03239.hp2 NA18964.hp2 NA18977.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0004 a0001c0001t0001 a0001c0001t0004	a0001c0001t0001g0074 a0001c0001t0001g0075 a0001c0001t0001g0076 others(5): Show a0001c0001t0001g0074 a0001c0001t0001g0075 a0001c0001t0001g0076 a0001c0001t0001g0112 a0001c0001t0001g0114 a0001c0001t0004g0134 a0001c0001t0004g0204 a0001c0001t0004g0257	8	386	0.0207	36	c.62- others(51): Show c.62-1269_62-1268insATATATATATATATATATATATATATATAT ATATAT	STOM	ENSG00000148175.13	transcript	ENST00000286713.7	protein_coding	1/6			chr9	TogoVar
STOM_chr9_121333987_121375250	121357437	A A	ATATATAT others(29): Show ATATATATATATATATATATATATATATATATATATT	intron_variant intron_variant	MODIFIER	HG01346.hp1 NA18966.hp2 NA18968.hp1 HG01346.hp1 NA18966.hp2 NA18968.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0004 a0001c0001t0003 a0001c0001t0004	a0001c0001t0003g0217 a0001c0001t0003g0224 a0001c0001t0004g0135 a0001c0001t0003g0217 a0001c0001t0003g0224 a0001c0001t0004g0135	3	386	0.0078	36	c.62- others(51): Show c.62-1282_62-1281insAATATATATATATATATATATATATATATA TATATA	STOM	ENSG00000148175.13	transcript	ENST00000286713.7	protein_coding	1/6			chr9	TogoVar
STON1_chr2_48525154_48603513	48590636	A A	AACACACA others(29): Show AACACACACACACACACACACACACACACACACACAC	intron_variant intron_variant	MODIFIER	NA19087.hp2 NA19087.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0094 a0001c0001t0003g0094	1	376	0.0027	36	c.193 others(53): Show c.1931-993_1931-992insACACACACACACACACACACACACACAC ACACACAC	STON1	ENSG00000243244.7	transcript	ENST00000404752.6	protein_coding	2/3		INFO_REALIGN_3_PRIME	chr2	TogoVar
STON2_chr14_81255652_81405324	81308824	A A	ATATATGT others(29): Show ATATATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG	intron_variant intron_variant	MODIFIER	HG02055.hp2 HG02055.hp2	a0002 a0002	a0002c0010 a0002c0010	a0002c0010t0060 a0002c0010t0060	a0002c0010t0060g0198 a0002c0010t0060g0198	1	264	0.0038	36	c.742 others(55): Show c.742+15192_742+15193insCACACACACACACACACACACACACA CACACATATA	STON2	ENSG00000140022.14	transcript	ENST00000614646.5	protein_coding	5/7			chr14	TogoVar
STPG4_chr2_47081991_47160308	47084809	C C	CACACACA others(29): Show CACACACACACACACACATACACACACAGAGAGAGAG	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02145.hp2 HG03516.hp2 NA18998.hp2 HG02145.hp2 HG03516.hp2 NA18998.hp2	a0001 a0002 a0003 a0001 a0002 a0003	a0001c0001 a0002c0002 a0003c0003 a0001c0001 a0002c0002 a0003c0003	a0001c0001t0001 a0002c0002t0001 a0003c0003t0001 a0001c0001t0001 a0002c0002t0001 a0003c0003t0001	a0001c0001t0001g0189 a0002c0002t0001g0296 a0003c0003t0001g0024 a0001c0001t0001g0189 a0002c0002t0001g0296 a0003c0003t0001g0024	3	352	0.0085	36	c.21 others(47): Show c.2198_*2199insCTCTCTCTCTGTGTGTGTATGTGTGTGTGTGTGT GT	STPG4	ENSG00000239605.11	transcript	ENST00000445927.7	protein_coding		2181		chr2	TogoVar

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