Joint Open Genome and Omics Platform (JoGo)

Search by Variant

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Chr

Chromosome name (e.g., chr11).

Snpeff genename

Exact SnpEff gene name.

Sampleids

Target sampleid (e.g. HG02615).

Snpeff haplotype class

Haplotype-annotation class (e.g., ahapid, ahapid+chapid).

Snpeff annotation impact

Exact impact level (e.g., HIGH, MODERATE, LOW).

Snpeff annotation impact detail

Keyword match in SnpEff annotation.

Hapid

One or more haplotype IDs (comma-separated; e.g., a0001, a01, a0001c0001, a01c02, a1c2, a0001c0001t0005, a0001c0001t0005g0018).

Samplehapid

Sample haplotype IDs to include (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

No_hapid

Haplotype IDs to exclude (comma-separated; e.g., a0001, a0002, a0001c0001, a0001c0001t0005, a1, a01).

No_samplehapid

Sample haplotype IDs to exclude (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

Start

Start position (GRCh38).

End

End position (GRCh38).

Minac

Minimum alternate allele count (≥).

Maxac

Maximum alternate allele count (≤).

Minlen

Minimum variant length (≥).

Maxlen

Maximum variant length (≤).

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regionname	pos	ref	alt	annotation	impact	samples	ahapids	achapids	acthapids	actghapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	external
WWC1_chr5_168286645_168477303	168339806	T T	TTTTCTTT others(29): Show TTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTC	intron_variant intron_variant	MODIFIER	NA18941.hp1 NA18941.hp1	a0001 a0001	a0001c0019 a0001c0019	a0001c0019t0003 a0001c0019t0003	a0001c0019t0003g0243 a0001c0019t0003g0243	1	254	0.0039	36	c.120 others(55): Show c.120-31591_120-31590insCTTTCTTTCTTTCTTTCTTTCTTTCT TTCTTTCTTT	WWC1	ENSG00000113645.15	transcript	ENST00000265293.9	protein_coding	1/22		INFO_REALIGN_3_PRIME	chr5	TogoVar
WWOX_chr16_78094654_79217667	78144462	T T	TATATATA others(29): Show TATATATATATATACACATATATATATATATATATAC	intron_variant intron_variant	MODIFIER	HG01884.hp2 HG01884.hp2	a0003 a0003	a0003c0004 a0003c0004	a0003c0004t0004 a0003c0004t0004	a0003c0004t0004g0091 a0003c0004t0004g0091	1	142	0.0070	36	c.410 others(55): Show c.410-19720_410-19719insTATATATATATACACATATATATATA TATATATACA	WWOX	ENSG00000186153.19	transcript	ENST00000566780.6	protein_coding	4/8		INFO_REALIGN_3_PRIME	chr16	TogoVar
WWOX_chr16_78094654_79217667	78422663	G G	GTATGTAT others(29): Show GTATGTATATATATATATATATATATATATATATATA	intron_variant intron_variant	MODIFIER	HG03710.hp2 HG03710.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0076 a0001c0001t0003g0076	1	142	0.0070	36	c.606 others(53): Show c.606-2204_606-2203insGTATATATATATATATATATATATATAT ATATATAT	WWOX	ENSG00000186153.19	transcript	ENST00000566780.6	protein_coding	6/8		INFO_REALIGN_3_PRIME	chr16	TogoVar
WWOX_chr16_78094654_79217667	78422674	T T	TATATATA others(29): Show TATATATATATATATATATATATACACACACACACAC	intron_variant intron_variant	MODIFIER	HG00609.hp1 HG03942.hp1 HG00609.hp1 HG03942.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0072 a0001c0001t0003g0075 a0001c0001t0003g0072 a0001c0001t0003g0075	2	142	0.0141	36	c.606 others(53): Show c.606-2185_606-2184insTATATATATATACACACACACACACATA TATATATA	WWOX	ENSG00000186153.19	transcript	ENST00000566780.6	protein_coding	6/8		INFO_REALIGN_3_PRIME	chr16	TogoVar
WWOX_chr16_78094654_79217667	78422680	T T	TATATATA others(29): Show TATATATATATATATATATATATATATACACACACAC	intron_variant intron_variant	MODIFIER	HG02258.hp2 HG03486.hp2 HG02258.hp2 HG03486.hp2	a0001 a0011 a0001 a0011	a0001c0007 a0011c0018 a0001c0007 a0011c0018	a0001c0007t0009 a0011c0018t0002 a0001c0007t0009 a0011c0018t0002	a0001c0007t0009g0110 a0011c0018t0002g0131 a0001c0007t0009g0110 a0011c0018t0002g0131	2	142	0.0141	36	c.606 others(53): Show c.606-2185_606-2184insTATATATATATATATATATATACACACA CACATATA	WWOX	ENSG00000186153.19	transcript	ENST00000566780.6	protein_coding	6/8		INFO_REALIGN_3_PRIME	chr16	TogoVar
WWOX_chr16_78094654_79217667	78422734	C C	CACACACA others(29): Show CACACACATATATATATATATACACACACATATATAT	intron_variant intron_variant	MODIFIER	HG03831.hp2 HG03831.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0021 a0001c0001t0001g0021	1	142	0.0070	36	c.606 others(53): Show c.606-2131_606-2130insCATATATATATATATACACACACATATA TATACACA	WWOX	ENSG00000186153.19	transcript	ENST00000566780.6	protein_coding	6/8		INFO_REALIGN_3_PRIME	chr16	TogoVar
WWOX_chr16_78094654_79217667	78452878	T T	TATATATA others(29): Show TATATATATATATATATATATATATATACATACATAC	intron_variant intron_variant	MODIFIER	HG01891.hp1 HG01891.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0027 a0001c0001t0027	a0001c0001t0027g0096 a0001c0001t0027g0096	1	142	0.0070	36	c.105 others(57): Show c.1056+20129_1056+20130insTATATATATATATATATATATATA CATACATACATA	WWOX	ENSG00000186153.19	transcript	ENST00000566780.6	protein_coding	8/8		INFO_REALIGN_3_PRIME	chr16	TogoVar
WWOX_chr16_78094654_79217667	78557689	A A	ATTTTTTT others(29): Show ATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG02965.hp2 HG02965.hp2	a0002 a0002	a0002c0022 a0002c0022	a0002c0022t0007 a0002c0022t0007	a0002c0022t0007g0109 a0002c0022t0007g0109	1	142	0.0070	36	c.105 others(59): Show c.1056+124960_1056+124961insTTTTTTTTTTTTTTTTTTTTTT TTTTTTTTTTTTTT	WWOX	ENSG00000186153.19	transcript	ENST00000566780.6	protein_coding	8/8		INFO_REALIGN_3_PRIME	chr16	TogoVar
WWOX_chr16_78094654_79217667	78574999	T T	TTATATAT others(29): Show TTATATATATATATATATATATATATATAAATATATA	intron_variant intron_variant	MODIFIER	NA20129.hp1 NA20129.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0005 a0001c0001t0005	a0001c0001t0005g0050 a0001c0001t0005g0050	1	142	0.0070	36	c.105 others(59): Show c.1056+142269_1056+142270insTATATAAATATATATATATATA TATATATATATATA	WWOX	ENSG00000186153.19	transcript	ENST00000566780.6	protein_coding	8/8		INFO_REALIGN_3_PRIME	chr16	TogoVar
WWOX_chr16_78094654_79217667	78575028	T T	TATATATA others(29): Show TATATATATATATATAAATATATATATATATATATAA	intron_variant intron_variant	MODIFIER	HG04228.hp2 HG04228.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0119 a0001c0001t0001g0119	1	142	0.0070	36	c.105 others(59): Show c.1056+142291_1056+142292insAATATATATATATATATATAAA TATATATATATATA	WWOX	ENSG00000186153.19	transcript	ENST00000566780.6	protein_coding	8/8		INFO_REALIGN_3_PRIME	chr16	TogoVar
WWOX_chr16_78094654_79217667	78575034	T T	TATATATA others(29): Show TATATATATATAAATATATATATATATATATATATAA	intron_variant intron_variant	MODIFIER	HG01952.hp1 HG01952.hp1	a0015 a0015	a0015c0013 a0015c0013	a0015c0013t0001 a0015c0013t0001	a0015c0013t0001g0124 a0015c0013t0001g0124	1	142	0.0070	36	c.105 others(59): Show c.1056+142293_1056+142294insAATATATATATATATATATATA TAAATATATATATA	WWOX	ENSG00000186153.19	transcript	ENST00000566780.6	protein_coding	8/8		INFO_REALIGN_3_PRIME	chr16	TogoVar
WWOX_chr16_78094654_79217667	78718092	G G	GTTTTTTT others(29): Show GTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATTTTT	intron_variant intron_variant	MODIFIER	HG03453.hp2 HG03453.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0004	a0001c0001t0004g0053 a0001c0001t0004g0053	1	142	0.0070	36	c.105 others(59): Show c.1056+285342_1056+285343insTTTTTTTTTTTTTTTTTTTTTT TTTTTTATTTTTTT	WWOX	ENSG00000186153.19	transcript	ENST00000566780.6	protein_coding	8/8		INFO_REALIGN_3_PRIME	chr16	TogoVar
WWOX_chr16_78094654_79217667	79102948	T T	TCTCTTCC others(29): Show TCTCTTCCTTTTCTTCCTCATCCTCCTTTTCTTCCTC	intron_variant intron_variant	MODIFIER	HG02109.hp2 HG02486.hp1 HG02109.hp2 HG02486.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0003 a0001c0001t0001g0085 a0001c0001t0001g0003 a0001c0001t0001g0085	2	142	0.0141	36	c.105 others(59): Show c.1057-108630_1057-108629insTTCCTCCTCTTCCTTTTCTTCC TCATCCTCCTTTTC	WWOX	ENSG00000186153.19	transcript	ENST00000566780.6	protein_coding	8/8		INFO_REALIGN_3_PRIME	chr16	TogoVar
WWP1_chr8_86337547_86473503	86431155	G G	GAATATAT others(29): Show GAATATATATTATATTCTACATAATTATCTATAATAT	intron_variant intron_variant	MODIFIER	HG06807.hp2 HG06807.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0260 a0001c0001t0001g0260	1	300	0.0033	36	c.138 others(53): Show c.1388-233_1388-198dupACATAATTATCTATAATATAATATATAT TATATTCT	WWP1	ENSG00000123124.14	transcript	ENST00000517970.6	protein_coding	12/24		INFO_REALIGN_3_PRIME	chr8	TogoVar
XAF1_chr17_6751046_6780647	6751531	A A	AAAGAAGA others(29): Show AAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAG	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02615.hp2 HG02615.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0015 a0001c0001t0015	a0001c0001t0015g0013 a0001c0001t0015g0013	1	448	0.0022	36	c.-45 others(47): Show c.-4548_-4547insAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGA AG	XAF1	ENSG00000132530.17	transcript	ENST00000361842.8	protein_coding		4514		chr17	TogoVar
XAF1_chr17_6751046_6780647	6751534	A A	AAAGAAGA others(29): Show AAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAG	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02040.hp1 HG02155.hp2 HG04199.hp2 others(3): Show HG02040.hp1 HG02155.hp2 HG04199.hp2 NA18954.hp1 NA18986.hp1 NA19011.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0001c0002 a0002c0003 a0001c0001 a0001c0002 a0002c0003	a0001c0001t0001 a0001c0002t0003 a0002c0003t0001 a0001c0001t0001 a0001c0002t0003 a0002c0003t0001	a0001c0001t0001g0002 a0001c0001t0001g0056 a0001c0002t0003g0006 others(2): Show a0001c0001t0001g0002 a0001c0001t0001g0056 a0001c0002t0003g0006 a0001c0002t0003g0043 a0002c0003t0001g0194	6	448	0.0134	36	c.-45 others(47): Show c.-4545_-4544insAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGA AG	XAF1	ENSG00000132530.17	transcript	ENST00000361842.8	protein_coding		4511		chr17	TogoVar
XAGE1A_chrX_52490808_52505812	52492351	T T	TCTTCCTT others(29): Show TCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTC	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01981.hp2 HG02129.hp1 HG02300.hp2 others(6): Show HG01981.hp2 HG02129.hp1 HG02300.hp2 HG02922.hp2 HG03927.hp1 HG04228.hp1 HG06807.hp1 NA18906.hp1 NA19030.hp2	a0001 a0003 a0001 a0003	a0001c0001 a0003c0003 a0001c0001 a0003c0003	a0001c0001t0001 a0003c0003t0001 a0001c0001t0001 a0003c0003t0001	a0001c0001t0001g0001 a0001c0001t0001g0004 a0001c0001t0001g0007 others(2): Show a0001c0001t0001g0001 a0001c0001t0001g0004 a0001c0001t0001g0007 a0001c0001t0001g0019 a0003c0003t0001g0002	9	241	0.0373	36	c.-36 others(47): Show c.-3605_-3604insCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCT TC	XAGE1A	ENSG00000204379.11	transcript	ENST00000375602.2	protein_coding		3456		chrX	TogoVar
XAGE1B_chrX_52507077_52522063	52520507	C C	CAGGAAGG others(29): Show CAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGA	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00099.hp1 HG00438.hp2 HG00597.hp1 others(24): Show HG00099.hp1 HG00438.hp2 HG00597.hp1 HG01071.hp2 HG01074.hp1 HG01358.hp1 HG01943.hp1 HG01952.hp1 HG02015.hp1 HG02145.hp1 HG02148.hp1 HG02523.hp1 HG02559.hp1 HG02615.hp1 HG02896.hp1 HG02896.hp2 HG04228.hp1 NA18906.hp2 NA18972.hp1 NA18979.hp1 NA18979.hp2 NA19011.hp2 NA19064.hp1 NA19079.hp1 NA19087.hp1 NA19087.hp2 NA19088.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0001 a0001c0001t0001g0003 a0001c0001t0001g0004 others(5): Show a0001c0001t0001g0001 a0001c0001t0001g0003 a0001c0001t0001g0004 a0001c0001t0001g0008 a0001c0001t0001g0009 a0001c0001t0001g0016 a0001c0001t0001g0022 a0001c0001t0001g0034	27	241	0.1120	36	c.-35 others(47): Show c.-3575_-3574insTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTC CT	XAGE1B	ENSG00000204382.12	transcript	ENST00000375616.6	protein_coding		3445		chrX	TogoVar
XAGE5_chrX_52806287_52823301	52822820	C C	CTTTTTTT others(29): Show CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	downstream_gene_variant downstream_gene_variant	MODIFIER	HG03471.hp1 HG03471.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0033 a0001c0001t0001g0033	1	265	0.0038	36	c.46 others(47): Show c.4607_*4608insTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT TT	XAGE5	ENSG00000171405.14	transcript	ENST00000375501.2	protein_coding		4520		chrX	TogoVar
XDH_chr2_31329321_31419742	31343308	A A	ATATGCAT others(29): Show ATATGCATGTTTATATATATATATATATATGCATGTT	intron_variant intron_variant	MODIFIER	NA18974.hp2 NA18974.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0006 a0001c0001t0006	a0001c0001t0006g0127 a0001c0001t0006g0127	1	370	0.0027	36	c.340 others(55): Show c.3405-1012_3405-1011insAACATGCATATATATATATATATATA AACATGCATA	XDH	ENSG00000158125.10	transcript	ENST00000379416.4	protein_coding	31/35			chr2	TogoVar
XG_chrX_2747040_2821500	2817166	G G	GGAAGGGA others(29): Show GGAAGGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAA	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01993.hp1 HG01993.hp2 NA18950.hp1 others(4): Show HG01993.hp1 HG01993.hp2 NA18950.hp1 NA18973.hp1 NA19074.hp1 NA19082.hp1 homoSapiens_chm13v2.hp1	a0001 a0003 a0001 a0003	a0001c0001 a0003c0004 a0001c0001 a0003c0004	a0001c0001t0001 a0001c0001t0002 a0001c0001t0026 others(1): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0026 a0003c0004t0002	a0001c0001t0001g0089 a0001c0001t0002g0132 a0001c0001t0002g0156 others(4): Show a0001c0001t0001g0089 a0001c0001t0002g0132 a0001c0001t0002g0156 a0001c0001t0002g0239 a0001c0001t0002g0259 a0001c0001t0026g0171 a0003c0004t0002g0235	7	322	0.0217	36	c.27 others(47): Show c.2786_*2787insGAAGGGAAGGAAGGAAGGAAGGAAGGAAGGAAGG AA	XG	ENSG00000124343.14	transcript	ENST00000644266.2	protein_coding		667		chrX	TogoVar
XIAP_chrX_123855053_123918972	123899155	A A	ATATATAT others(29): Show ATATATATATATATATATGATTTTATATATATGATTT	intron_variant intron_variant	MODIFIER	HG02451.hp1 HG02451.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0025 a0001c0001t0002g0025	1	286	0.0035	36	c.110 others(55): Show c.1100-1327_1100-1326insATATATGATTTTATATATATGATTTT ATATATATAT	XIAP	ENSG00000101966.14	transcript	ENST00000371199.8	protein_coding	5/6		INFO_REALIGN_3_PRIME	chrX	TogoVar
XKR3_chr22_16778480_16830411	16791770	A A	AGAGAGGG others(29): Show AGAGAGGGAGAAAGAGGGAGAGAGAGGGAGAGAGAGG	intron_variant intron_variant	MODIFIER	HG02647.hp2 HG02647.hp2	a0011 a0011	a0011c0016 a0011c0016	a0011c0016t0002 a0011c0016t0002	a0011c0016t0002g0337 a0011c0016t0002g0337	1	418	0.0024	36	c.590 others(53): Show c.590-7362_590-7361insCCTCTCTCTCCCTCTCTCTCCCTCTTTC TCCCTCTC	XKR3	ENSG00000172967.8	transcript	ENST00000684488.1	protein_coding	3/3			chr22	TogoVar
XKR3_chr22_16778480_16830411	16799413	C C	CAAAAAAA others(29): Show CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	NA18998.hp1 NA18998.hp1	a0003 a0003	a0003c0003 a0003c0003	a0003c0003t0002 a0003c0003t0002	a0003c0003t0002g0312 a0003c0003t0002g0312	1	418	0.0024	36	c.589 others(51): Show c.589+357_589+358insTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT TTTTTT	XKR3	ENSG00000172967.8	transcript	ENST00000684488.1	protein_coding	3/3			chr22	TogoVar
XKR4_chr8_55097028_55547054	55247835	T T	TTTTCTTT others(29): Show TTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTC	intron_variant intron_variant	MODIFIER	HG03486.hp2 HG03486.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0144 a0001c0001t0144	a0001c0001t0144g0085 a0001c0001t0144g0085	1	182	0.0055	36	c.807 others(57): Show c.807-109820_807-109819insCTTTCTTTCTTTCTTTCTTTCTTT CTTTCTTTCTTT	XKR4	ENSG00000206579.10	transcript	ENST00000327381.7	protein_coding	1/2		INFO_REALIGN_3_PRIME	chr8	TogoVar
XKR6_chr8_10891045_11206833	10984732	C C	CTCTCTCT others(29): Show CTCTCTCTCTCTATATATATATATATATATATATATA	intron_variant intron_variant	MODIFIER	HG00099.hp2 HG00099.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0009 a0001c0001t0009	a0001c0001t0009g0161 a0001c0001t0009g0161	1	178	0.0056	36	c.765 others(55): Show c.765-59903_765-59902insTATATATATATATATATATATATATA GAGAGAGAGA	XKR6	ENSG00000171044.11	transcript	ENST00000416569.3	protein_coding	1/2			chr8	TogoVar
XKR6_chr8_10891045_11206833	10984732	C C	CTCTCTCT others(29): Show CTCTCTCTCTCTCTCTCTCTATATATATATATATATA	intron_variant intron_variant	MODIFIER	HG01358.hp2 HG01358.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0005 a0001c0001t0005	a0001c0001t0005g0155 a0001c0001t0005g0155	1	178	0.0056	36	c.765 others(55): Show c.765-59903_765-59902insTATATATATATATATATAGAGAGAGA GAGAGAGAGA	XKR6	ENSG00000171044.11	transcript	ENST00000416569.3	protein_coding	1/2			chr8	TogoVar
XKR6_chr8_10891045_11206833	10984732	C C	CTCTCTCT others(29): Show CTCTCTCTCTCTCTCTCTCTCTATATATATATATATA	intron_variant intron_variant	MODIFIER	HG01261.hp2 HG01261.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0030 a0001c0001t0030	a0001c0001t0030g0006 a0001c0001t0030g0006	1	178	0.0056	36	c.765 others(55): Show c.765-59903_765-59902insTATATATATATATATAGAGAGAGAGA GAGAGAGAGA	XKR6	ENSG00000171044.11	transcript	ENST00000416569.3	protein_coding	1/2			chr8	TogoVar
XKR6_chr8_10891045_11206833	11033307	A A	ATGATGAT others(29): Show ATGATGATGATGACGATAGTGATGGTGATGGTGGTGG	intron_variant intron_variant	MODIFIER	HG01884.hp2 HG01891.hp2 HG02572.hp1 others(1): Show HG01884.hp2 HG01891.hp2 HG02572.hp1 NA19030.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0006 a0001c0001t0009 a0001c0001t0011 others(1): Show a0001c0001t0006 a0001c0001t0009 a0001c0001t0011 a0001c0001t0043	a0001c0001t0006g0099 a0001c0001t0009g0169 a0001c0001t0011g0101 others(1): Show a0001c0001t0006g0099 a0001c0001t0009g0169 a0001c0001t0011g0101 a0001c0001t0043g0107	4	178	0.0225	36	c.765 others(57): Show c.765-108513_765-108478dupCCACCACCATCACCATCACTATCG TCATCATCATCA	XKR6	ENSG00000171044.11	transcript	ENST00000416569.3	protein_coding	1/2			chr8	TogoVar
XKR6_chr8_10891045_11206833	11033412	A A	ATGGTGGT others(29): Show ATGGTGGTGGTGATGATGATGATGACGATAGTGATGG	intron_variant intron_variant	MODIFIER	HG01081.hp1 HG01993.hp1 HG02451.hp1 others(1): Show HG01081.hp1 HG01993.hp1 HG02451.hp1 HG02630.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0008 a0001c0001t0023 others(1): Show a0001c0001t0002 a0001c0001t0008 a0001c0001t0023 a0001c0001t0050	a0001c0001t0002g0117 a0001c0001t0008g0079 a0001c0001t0023g0125 others(1): Show a0001c0001t0002g0117 a0001c0001t0008g0079 a0001c0001t0023g0125 a0001c0001t0050g0126	4	178	0.0225	36	c.765 others(57): Show c.765-108583_765-108582insCCATCACTATCGTCATCATCATCA TCACCACCACCA	XKR6	ENSG00000171044.11	transcript	ENST00000416569.3	protein_coding	1/2			chr8	TogoVar
XKR6_chr8_10891045_11206833	11178556	A A	ATATATAT others(29): Show ATATATATATATGTATATATATATATATATATATATG	intron_variant intron_variant	MODIFIER	HG00741.hp1 HG03239.hp1 HG03669.hp2 others(2): Show HG00741.hp1 HG03239.hp1 HG03669.hp2 HG03688.hp1 HG04204.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0008 a0001c0001t0015 others(2): Show a0001c0001t0003 a0001c0001t0008 a0001c0001t0015 a0001c0001t0018 a0001c0001t0020	a0001c0001t0003g0041 a0001c0001t0008g0039 a0001c0001t0015g0013 others(2): Show a0001c0001t0003g0041 a0001c0001t0008g0039 a0001c0001t0015g0013 a0001c0001t0018g0004 a0001c0001t0020g0052	5	178	0.0281	36	c.764 others(55): Show c.764+22019_764+22020insCATATATATATATATATATATATACA TATATATATA	XKR6	ENSG00000171044.11	transcript	ENST00000416569.3	protein_coding	1/2			chr8	TogoVar
XKRX_chrX_100908445_100933917	100917674	A A	AAAGAAAA others(29): Show AAAGAAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	intron_variant intron_variant	MODIFIER	HG02683.hp2 NA18949.hp1 HG02683.hp2 NA18949.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0205 a0001c0001t0001g0226 a0001c0001t0001g0205 a0001c0001t0001g0226	2	297	0.0067	36	c.605 others(53): Show c.605-2592_605-2591insCTTTCTTTCTTTCTTTCTTTCTTTCTTT CTTTTCTT	XKRX	ENSG00000182489.9	transcript	ENST00000372956.3	protein_coding	2/2			chrX	TogoVar
XKRX_chrX_100908445_100933917	100917674	A A	AAAGAAAG others(29): Show AAAGAAAGAAAAGAAAGAAAGAAAGAAAGAAAGAAAG	intron_variant intron_variant	MODIFIER	HG01891.hp2 HG03540.hp2 HG01891.hp2 HG03540.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0175 a0001c0001t0001g0242 a0001c0001t0001g0175 a0001c0001t0001g0242	2	297	0.0067	36	c.605 others(53): Show c.605-2592_605-2591insCTTTCTTTCTTTCTTTCTTTCTTTCTTT TCTTTCTT	XKRX	ENSG00000182489.9	transcript	ENST00000372956.3	protein_coding	2/2			chrX	TogoVar
XKRX_chrX_100908445_100933917	100917674	A A	AAAGAAAG others(29): Show AAAGAAAGAAAGAAAAGAAAGAAAGAAAGAAAGAAAG	intron_variant intron_variant	MODIFIER	HG03486.hp2 HG03486.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0173 a0001c0001t0001g0173	1	297	0.0034	36	c.605 others(53): Show c.605-2592_605-2591insCTTTCTTTCTTTCTTTCTTTCTTTTCTT TCTTTCTT	XKRX	ENSG00000182489.9	transcript	ENST00000372956.3	protein_coding	2/2			chrX	TogoVar
XKRX_chrX_100908445_100933917	100917674	A A	AAAGAAAG others(29): Show AAAGAAAGAAAGAAAGAAAAGAAAGAAAGAAAGAAAG	intron_variant intron_variant	MODIFIER	NA18942.hp2 NA18942.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0234 a0001c0001t0001g0234	1	297	0.0034	36	c.605 others(53): Show c.605-2592_605-2591insCTTTCTTTCTTTCTTTCTTTTCTTTCTT TCTTTCTT	XKRX	ENSG00000182489.9	transcript	ENST00000372956.3	protein_coding	2/2			chrX	TogoVar
XKRX_chrX_100908445_100933917	100917722	G G	GAAAGAAA others(29): Show GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAT	intron_variant intron_variant	MODIFIER	NA18978.hp1 NA18978.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0056 a0001c0001t0001g0056	1	297	0.0034	36	c.605 others(53): Show c.605-2640_605-2639insATTTCTTTCTTTCTTTCTTTCTTTCTTT CTTTCTTT	XKRX	ENSG00000182489.9	transcript	ENST00000372956.3	protein_coding	2/2			chrX	TogoVar
XPO6_chr16_28092976_28216965	28160503	C C	CAAAAAAA others(29): Show CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG03927.hp1 HG03927.hp1	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0002 a0001c0003t0002	a0001c0003t0002g0041 a0001c0003t0002g0041	1	308	0.0033	36	c.644 others(53): Show c.644-3977_644-3976insTTTTTTTTTTTTTTTTTTTTTTTTTTTT TTTTTTTT	XPO6	ENSG00000169180.12	transcript	ENST00000304658.10	protein_coding	6/23			chr16	TogoVar
XPO6_chr16_28092976_28216965	28186374	C C	CTTTTTTT others(29): Show CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG01891.hp1 HG01891.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0280 a0001c0001t0001g0280	1	308	0.0033	36	c.4-5 others(49): Show c.4-5344_4-5343insAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAA	XPO6	ENSG00000169180.12	transcript	ENST00000304658.10	protein_coding	1/23			chr16	TogoVar
XRCC1_chr19_43538311_43580527	43543341	C C	CGTGTGTG others(29): Show CGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG01123.hp2 HG01123.hp2	a0007 a0007	a0007c0009 a0007c0009	a0007c0009t0015 a0007c0009t0015	a0007c0009t0015g0272 a0007c0009t0015g0272	1	428	0.0023	36	c.15 others(43): Show c.15_*50dupACACACACACACACACACACACACACACACACACAC	XRCC1	ENSG00000073050.12	transcript	ENST00000262887.10	protein_coding	17/17	50		chr19	TogoVar
XRCC1_chr19_43538311_43580527	43568739	T T	TGAGGGAG others(29): Show TGAGGGAGCAGGAGTTGGGGAGGGAGCAGGAGTTGGG	intron_variant intron_variant	MODIFIER	HG01167.hp2 HG01169.hp1 HG01257.hp2 others(4): Show HG01167.hp2 HG01169.hp1 HG01257.hp2 HG01928.hp2 HG01952.hp2 HG02056.hp1 HG02300.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0005 a0001c0001t0004 a0001c0001t0005	a0001c0001t0004g0016 a0001c0001t0004g0056 a0001c0001t0004g0057 others(3): Show a0001c0001t0004g0016 a0001c0001t0004g0056 a0001c0001t0004g0057 a0001c0001t0004g0081 a0001c0001t0004g0082 a0001c0001t0005g0083	7	428	0.0164	36	c.144 others(53): Show c.144+6135_144+6170dupCCCAACTCCTGCTCCCTCCCCAACTCCT GCTCCCTC	XRCC1	ENSG00000073050.12	transcript	ENST00000262887.10	protein_coding	2/16			chr19	TogoVar
XRCC2_chr7_152639776_152681141	152646301	G G	GGTGTGTG others(29): Show GGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG02896.hp2 HG02897.hp1 HG02896.hp2 HG02897.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0033 a0001c0001t0033	a0001c0001t0033g0202 a0001c0001t0033g0203 a0001c0001t0033g0202 a0001c0001t0033g0203	2	394	0.0051	36	c.23 others(47): Show c.2340_*2341insACACACACACACACACACACACACACACACACAC AC	XRCC2	ENSG00000196584.4	transcript	ENST00000359321.2	protein_coding	3/3	2340		chr7	TogoVar
XRCC4_chr5_83072547_83358760	83103009	G G	GATATATA others(29): Show GATATATATATATATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG00741.hp2 HG00741.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0190 a0001c0001t0001g0190	1	262	0.0038	36	c.-10 others(53): Show c.-10-1879_-10-1878insATATATATATATATATATATATATATAT ATATATAT	XRCC4	ENSG00000152422.16	transcript	ENST00000396027.9	protein_coding	1/7		INFO_REALIGN_3_PRIME	chr5	TogoVar
XRCC5_chr2_216104348_216211293	216187821	A A	ACACACAC others(29): Show ACACACACACACACACACACACTCTCTCTCTCTCTCT	intron_variant intron_variant	MODIFIER	HG02145.hp1 HG02145.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0152 a0001c0001t0002g0152	1	352	0.0028	36	c.183 others(55): Show c.1835-2403_1835-2402insACACACACACACACACACACTCTCTC TCTCTCTCTC	XRCC5	ENSG00000079246.16	transcript	ENST00000392132.7	protein_coding	16/20		INFO_REALIGN_3_PRIME	chr2	TogoVar
XYLB_chr3_38341785_38419985	38419578	T T	TTATATAT others(29): Show TTATATATATATATATATATATATATATATATATATA	downstream_gene_variant downstream_gene_variant	MODIFIER	NA18522.hp2 NA18522.hp2	a0001 a0001	a0001c0014 a0001c0014	a0001c0014t0006 a0001c0014t0006	a0001c0014t0006g0268 a0001c0014t0006g0268	1	358	0.0028	36	c.65 others(47): Show c.6565_*6566insTATATATATATATATATATATATATATATATATA TA	XYLB	ENSG00000093217.11	transcript	ENST00000207870.8	protein_coding		4594		chr3	TogoVar
XYLB_chr3_38341785_38419985	38419603	T T	TATATATA others(29): Show TATATATATATATATATATATATATATATATATATAA	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00741.hp1 HG01361.hp1 HG02071.hp2 others(15): Show HG00741.hp1 HG01361.hp1 HG02071.hp2 HG02135.hp1 HG02698.hp1 HG03017.hp1 HG03239.hp1 HG03704.hp2 HG03942.hp1 HG04199.hp1 HG04199.hp2 HG04228.hp2 NA18960.hp2 NA18964.hp2 NA19010.hp2 NA19054.hp1 NA19057.hp2 NA19072.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0002c0002 a0001c0001 a0002c0002	a0001c0001t0001 a0001c0001t0004 a0002c0002t0001 others(1): Show a0001c0001t0001 a0001c0001t0004 a0002c0002t0001 a0002c0002t0004	a0001c0001t0001g0110 a0001c0001t0001g0111 a0001c0001t0001g0131 others(15): Show a0001c0001t0001g0110 a0001c0001t0001g0111 a0001c0001t0001g0131 a0001c0001t0001g0136 a0001c0001t0001g0137 a0001c0001t0001g0153 a0001c0001t0001g0156 a0001c0001t0001g0194 a0001c0001t0001g0204 a0001c0001t0001g0215 a0001c0001t0001g0304 a0001c0001t0004g0298 a0002c0002t0001g0036 a0002c0002t0001g0067 a0002c0002t0004g0031 a0002c0002t0004g0045 a0002c0002t0004g0060 a0002c0002t0004g0104	18	358	0.0503	36	c.65 others(47): Show c.6590_*6591insATATATATATATATATATATATATATATATATAT AA	XYLB	ENSG00000093217.11	transcript	ENST00000207870.8	protein_coding		4619		chr3	TogoVar
XYLT1_chr16_17096769_17475960	17098225	A A	ATGTATAT others(29): Show ATGTATATACATATATATGTGTGTATATATATATGTG	downstream_gene_variant downstream_gene_variant	MODIFIER	NA20300.hp2 NA20300.hp2	a0003 a0003	a0003c0010 a0003c0010	a0003c0010t0066 a0003c0010t0066	a0003c0010t0066g0107 a0003c0010t0066g0107	1	156	0.0064	36	c.10 others(49): Show c.10469_*10470insCACATATATATATACACACATATATATGTATA TACA	XYLT1	ENSG00000103489.12	transcript	ENST00000261381.7	protein_coding		3543		chr16	TogoVar
XYLT1_chr16_17096769_17475960	17197014	A A	AATATATA others(29): Show AATATATATATATATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG02004.hp1 HG02723.hp1 homoSapiens_chm13v2.hp1 HG02004.hp1 HG02723.hp1 homoSapiens_chm13v2.hp1	a0001 a0007 a0001 a0007	a0001c0003 a0001c0008 a0007c0009 a0001c0003 a0001c0008 a0007c0009	a0001c0003t0008 a0001c0008t0038 a0007c0009t0076 a0001c0003t0008 a0001c0008t0038 a0007c0009t0076	a0001c0003t0008g0129 a0001c0008t0038g0023 a0007c0009t0076g0120 a0001c0003t0008g0129 a0001c0008t0038g0023 a0007c0009t0076g0120	3	156	0.0192	36	c.128 others(55): Show c.1289+1197_1289+1198insATATATATATATATATATATATATAT ATATATATAT	XYLT1	ENSG00000103489.12	transcript	ENST00000261381.7	protein_coding	5/11			chr16	TogoVar
XYLT1_chr16_17096769_17475960	17377175	T T	TCACACAC others(29): Show TCACACACACACACACACACACACACACACACACACC	intron_variant intron_variant	MODIFIER	HG01884.hp2 HG01884.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0069 a0001c0001t0069	a0001c0001t0069g0113 a0001c0001t0069g0113	1	156	0.0064	36	c.364 others(55): Show c.364-19126_364-19125insGGTGTGTGTGTGTGTGTGTGTGTGTG TGTGTGTGTG	XYLT1	ENSG00000103489.12	transcript	ENST00000261381.7	protein_coding	1/11			chr16	TogoVar
XYLT1_chr16_17096769_17475960	17377175	T T	TCACACAC others(29): Show TCACACACACACACACACACACACACACACCCACACC	intron_variant intron_variant	MODIFIER	HG02622.hp2 HG02622.hp2	a0007 a0007	a0007c0009 a0007c0009	a0007c0009t0007 a0007c0009t0007	a0007c0009t0007g0010 a0007c0009t0007g0010	1	156	0.0064	36	c.364 others(55): Show c.364-19126_364-19125insGGTGTGGGTGTGTGTGTGTGTGTGTG TGTGTGTGTG	XYLT1	ENSG00000103489.12	transcript	ENST00000261381.7	protein_coding	1/11			chr16	TogoVar
YAE1_chr7_39561404_39577881	39575577	A A	AGAGAGAG others(29): Show AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGTGTGT	downstream_gene_variant downstream_gene_variant	MODIFIER	NA19091.hp1 NA20300.hp2 NA19091.hp1 NA20300.hp2	a0001 a0003 a0001 a0003	a0001c0001 a0003c0005 a0001c0001 a0003c0005	a0001c0001t0001 a0003c0005t0001 a0001c0001t0001 a0003c0005t0001	a0001c0001t0001g0004 a0003c0005t0001g0014 a0001c0001t0001g0004 a0003c0005t0001g0014	2	450	0.0044	36	c.28 others(47): Show c.2871_*2872insGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGTGT GT	YAE1	ENSG00000241127.8	transcript	ENST00000223273.7	protein_coding		2697		chr7	TogoVar

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