Joint Open Genome and Omics Platform (JoGo)

Search by Variant

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Chr

Chromosome name (e.g., chr11).

Snpeff genename

Exact SnpEff gene name.

Sampleids

Target sampleid (e.g. HG02615).

Snpeff haplotype class

Haplotype-annotation class (e.g., ahapid, ahapid+chapid).

Snpeff annotation impact

Exact impact level (e.g., HIGH, MODERATE, LOW).

Snpeff annotation impact detail

Keyword match in SnpEff annotation.

Hapid

One or more haplotype IDs (comma-separated; e.g., a0001, a01, a0001c0001, a01c02, a1c2, a0001c0001t0005, a0001c0001t0005g0018).

Samplehapid

Sample haplotype IDs to include (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

No_hapid

Haplotype IDs to exclude (comma-separated; e.g., a0001, a0002, a0001c0001, a0001c0001t0005, a1, a01).

No_samplehapid

Sample haplotype IDs to exclude (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

Start

Start position (GRCh38).

End

End position (GRCh38).

Minac

Minimum alternate allele count (≥).

Maxac

Maximum alternate allele count (≤).

Minlen

Minimum variant length (≥).

Maxlen

Maximum variant length (≤).

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regionname	pos	ref	alt	annotation	impact	samples	ahapids	achapids	acthapids	actghapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	external
FLT4_chr5_180596506_180654600	180635298	A A	ATGCATGG others(29): Show ATGCATGGAGGGAAGTATGGGTGGATGGGTGGGTGGG	intron_variant intron_variant	MODIFIER	NA19081.hp2 NA19081.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0106 a0001c0001t0001g0106	1	388	0.0026	36	c.59- others(51): Show c.59-3521_59-3520insCCCACCCACCCATCCACCCATACTTCCCTC CATGCA	FLT4	ENSG00000037280.16	transcript	ENST00000261937.11	protein_coding	1/29			chr5	TogoVar
FLVCR1_chr1_212853275_212904363	212860350	G G	GTTTTTTT others(29): Show GTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG06807.hp2 HG06807.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0094 a0002c0002t0094	a0002c0002t0094g0152 a0002c0002t0094g0152	1	368	0.0027	36	c.738 others(53): Show c.738+1178_738+1179insTTTTTTTTTTTTTTTTTTTTTTTTTTTT TTTTTTTT	FLVCR1	ENSG00000162769.13	transcript	ENST00000366971.9	protein_coding	1/9		INFO_REALIGN_3_PRIME	chr1	TogoVar
FMN1_chr15_32760544_33199714	33048644	A A	AAAAAAAA others(29): Show AAAAAAAAAAAAAAAAAAAAAAAACAAAAACAAAAAC	intron_variant intron_variant	MODIFIER	HG00738.hp2 HG00738.hp2	a0004 a0004	a0004c0010 a0004c0010	a0004c0010t0001 a0004c0010t0001	a0004c0010t0001g0134 a0004c0010t0001g0134	1	196	0.0051	36	c.216 others(57): Show c.2161+16312_2161+16313insGTTTTTGTTTTTGTTTTTTTTTTT TTTTTTTTTTTT	FMN1	ENSG00000248905.10	transcript	ENST00000616417.5	protein_coding	6/20			chr15	TogoVar
FMN2_chr1_240086883_240480187	240241825	C C	CTTCTTTT others(29): Show CTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG02602.hp2 HG02602.hp2	a0070 a0070	a0070c0113 a0070c0113	a0070c0113t0003 a0070c0113t0003	a0070c0113t0003g0139 a0070c0113t0003g0139	1	174	0.0058	36	c.406 others(57): Show c.4066-16118_4066-16117insCTTTTTTTTTTTTTTTTTTTTTTT TTTTTTTTTTTT	FMN2	ENSG00000155816.21	transcript	ENST00000319653.14	protein_coding	6/17		INFO_REALIGN_3_PRIME	chr1	TogoVar
FMN2_chr1_240086883_240480187	240252953	C C	CTTTTTTT others(29): Show CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG03486.hp1 HG03486.hp1	a0001 a0001	a0001c0009 a0001c0009	a0001c0009t0001 a0001c0009t0001	a0001c0009t0001g0072 a0001c0009t0001g0072	1	174	0.0058	36	c.406 others(55): Show c.4066-4975_4066-4974insTTTTTTTTTTTTTTTTTTTTTTTTTT TTTTTTTTTT	FMN2	ENSG00000155816.21	transcript	ENST00000319653.14	protein_coding	6/17		INFO_REALIGN_3_PRIME	chr1	TogoVar
FMN2_chr1_240086883_240480187	240431423	T T	TATATATA others(29): Show TATATATATATATATATATATATATATATATATACAC	intron_variant intron_variant	MODIFIER	HG02486.hp1 NA20129.hp2 HG02486.hp1 NA20129.hp2	a0018 a0022 a0018 a0022	a0018c0095 a0022c0093 a0018c0095 a0022c0093	a0018c0095t0008 a0022c0093t0006 a0018c0095t0008 a0022c0093t0006	a0018c0095t0008g0167 a0022c0093t0006g0138 a0018c0095t0008g0167 a0022c0093t0006g0138	2	174	0.0115	36	c.491 others(55): Show c.4911-6637_4911-6636insTATATATATATATATATATATATATA TATATACACA	FMN2	ENSG00000155816.21	transcript	ENST00000319653.14	protein_coding	15/17		INFO_REALIGN_3_PRIME	chr1	TogoVar
FMNL1_chr17_45216885_45252318	45217542	T T	TTCCTTCC others(29): Show TTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCG	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02976.hp2 HG02976.hp2	a0003 a0003	a0003c0005 a0003c0005	a0003c0005t0001 a0003c0005t0001	a0003c0005t0001g0074 a0003c0005t0001g0074	1	384	0.0026	36	c.-45 others(47): Show c.-4583_-4582insTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTC CG	FMNL1	ENSG00000184922.15	transcript	ENST00000331495.8	protein_coding		4342		chr17	TogoVar
FMNL2_chr2_152330174_152654826	152589987	A A	ATATATAT others(29): Show ATATATATGTATATGTATGTATATGTATATGTATATG	intron_variant intron_variant	MODIFIER	NA19085.hp2 NA19085.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0039 a0001c0001t0002g0039	1	200	0.0050	36	c.876 others(53): Show c.876+8941_876+8942insATATGTATATGTATGTATATGTATATGT ATATGTAT	FMNL2	ENSG00000157827.20	transcript	ENST00000288670.14	protein_coding	9/25		INFO_REALIGN_3_PRIME	chr2	TogoVar
FMO3_chr1_171085905_171122819	171095917	T T	TATAATAT others(29): Show TATAATATAATTATATATATAATTATAACATAATATA	intron_variant intron_variant	MODIFIER	HG01891.hp2 HG02258.hp2 HG03130.hp1 HG01891.hp2 HG02258.hp2 HG03130.hp1	a0001 a0001	a0001c0007 a0001c0007	a0001c0007t0001 a0001c0007t0001	a0001c0007t0001g0195 a0001c0007t0001g0196 a0001c0007t0001g0197 a0001c0007t0001g0195 a0001c0007t0001g0196 a0001c0007t0001g0197	3	404	0.0074	36	c.132 others(53): Show c.132+3129_132+3130insAATATAATTATATATATAATTATAACAT AATATAAT	FMO3	ENSG00000007933.13	transcript	ENST00000367755.9	protein_coding	2/8		INFO_REALIGN_3_PRIME	chr1	TogoVar
FMO3_chr1_171085905_171122819	171095919	T T	TAATATAA others(29): Show TAATATAATTATATATATAATTATAACATATAATATA	intron_variant intron_variant	MODIFIER	HG02280.hp1 HG02451.hp1 HG02723.hp2 others(4): Show HG02280.hp1 HG02451.hp1 HG02723.hp2 HG03041.hp2 HG03540.hp2 HG06807.hp2 NA18522.hp1	a0002 a0002	a0002c0006 a0002c0006	a0002c0006t0001 a0002c0006t0001	a0002c0006t0001g0015 a0002c0006t0001g0261 a0002c0006t0001g0262 others(1): Show a0002c0006t0001g0015 a0002c0006t0001g0261 a0002c0006t0001g0262 a0002c0006t0001g0263	7	404	0.0173	36	c.132 others(53): Show c.132+3129_132+3130insAATATAATTATATATATAATTATAACAT ATAATATA	FMO3	ENSG00000007933.13	transcript	ENST00000367755.9	protein_coding	2/8			chr1	TogoVar
FMO3_chr1_171085905_171122819	171096016	T T	TATTAATA others(29): Show TATTAATATATAATATATATTATATATAAATATATAA	intron_variant intron_variant	MODIFIER	HG01884.hp2 HG02280.hp1 HG02451.hp1 others(6): Show HG01884.hp2 HG02280.hp1 HG02451.hp1 HG02572.hp2 HG02723.hp2 HG03041.hp2 HG03540.hp2 HG06807.hp2 NA18522.hp1	a0002 a0002	a0002c0006 a0002c0006	a0002c0006t0001 a0002c0006t0001	a0002c0006t0001g0015 a0002c0006t0001g0193 a0002c0006t0001g0194 others(3): Show a0002c0006t0001g0015 a0002c0006t0001g0193 a0002c0006t0001g0194 a0002c0006t0001g0261 a0002c0006t0001g0262 a0002c0006t0001g0263	9	404	0.0223	36	c.132 others(53): Show c.132+3226_132+3227insATTAATATATAATATATATTATATATAA ATATATAA	FMO3	ENSG00000007933.13	transcript	ENST00000367755.9	protein_coding	2/8			chr1	TogoVar
FMR1_chrX_147906919_147956125	147912049	C C	CGCGGCGG others(29): Show CGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCG	5_prime_UTR_variant 5_prime_UTR_variant	MODIFIER	HG02922.hp1 HG02922.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0074 a0001c0002t0074	a0001c0002t0074g0193 a0001c0002t0074g0193	1	304	0.0033	36	c.-10 others(44): Show c.-100_-99insCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGG	FMR1	ENSG00000102081.16	transcript	ENST00000370475.9	protein_coding	1/17	99	INFO_REALIGN_3_PRIME	chrX	TogoVar
FMR1_chrX_147906919_147956125	147912051	C C	CGGCGGCG others(29): Show CGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGA	5_prime_UTR_variant 5_prime_UTR_variant	MODIFIER	HG02809.hp2 HG02809.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0066 a0001c0002t0066	a0001c0002t0066g0097 a0001c0002t0066g0097	1	304	0.0033	36	c.-10 others(44): Show c.-100_-99insCGGCGGAGGCGGCGGCGGCGGCGGCGGCGGCGGCGG	FMR1	ENSG00000102081.16	transcript	ENST00000370475.9	protein_coding	1/17	99	INFO_REALIGN_3_PRIME	chrX	TogoVar
FMR1_chrX_147906919_147956125	147912072	C C	CGGCGGAG others(29): Show CGGCGGAGGCGGCGGCGGCGGCGGCGGCGGCGGCGGA	5_prime_UTR_variant 5_prime_UTR_variant	MODIFIER	NA18943.hp1 NA18979.hp2 NA18984.hp1 others(3): Show NA18943.hp1 NA18979.hp2 NA18984.hp1 NA18986.hp1 NA19012.hp1 NA19087.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0006 a0001c0001t0006	a0001c0001t0006g0001 a0001c0001t0006g0015 a0001c0001t0006g0051 others(3): Show a0001c0001t0006g0001 a0001c0001t0006g0015 a0001c0001t0006g0051 a0001c0001t0006g0052 a0001c0001t0006g0053 a0001c0001t0006g0072	6	304	0.0197	36	c.-10 others(45): Show c.-103_-102insAGGCGGCGGCGGCGGCGGCGGCGGCGGCGGAGGCGG	FMR1	ENSG00000102081.16	transcript	ENST00000370475.9	protein_coding	1/17	102	INFO_REALIGN_3_PRIME	chrX	TogoVar
FNDC3A_chr13_48970912_49214779	49073773	A A	ATATATAT others(29): Show ATATATATGTGTATATATAATATATATGTATATATAT	intron_variant intron_variant	MODIFIER	HG01975.hp2 HG02258.hp2 HG02647.hp1 HG01975.hp2 HG02258.hp2 HG02647.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0135 a0001c0001t0001g0136 a0001c0001t0001g0137 a0001c0001t0001g0135 a0001c0001t0001g0136 a0001c0001t0001g0137	3	292	0.0103	36	c.100 others(53): Show c.100-1499_100-1498insAATATATATGTATATATATTATATATGT GTATATAT	FNDC3A	ENSG00000102531.16	transcript	ENST00000492622.6	protein_coding	2/25		INFO_REALIGN_3_PRIME	chr13	TogoVar
FNDC3A_chr13_48970912_49214779	49073773	A A	ATATATAT others(29): Show ATATATATGTGTATATATTATATATATGTATATATAT	intron_variant intron_variant	MODIFIER	HG01257.hp1 HG02818.hp1 HG02818.hp2 others(9): Show HG01257.hp1 HG02818.hp1 HG02818.hp2 HG02886.hp2 HG02970.hp2 HG03195.hp2 HG03209.hp1 HG03453.hp1 HG03471.hp2 HG03540.hp1 HG03579.hp2 NA20300.hp2	a0001 a0004 a0001 a0004	a0001c0001 a0004c0008 a0001c0001 a0004c0008	a0001c0001t0001 a0004c0008t0001 a0001c0001t0001 a0004c0008t0001	a0001c0001t0001g0001 a0001c0001t0001g0124 a0001c0001t0001g0125 others(9): Show a0001c0001t0001g0001 a0001c0001t0001g0124 a0001c0001t0001g0125 a0001c0001t0001g0132 a0001c0001t0001g0133 a0001c0001t0001g0134 a0001c0001t0001g0157 a0001c0001t0001g0286 a0001c0001t0001g0287 a0001c0001t0001g0288 a0001c0001t0001g0289 a0004c0008t0001g0123	12	292	0.0411	36	c.100 others(53): Show c.100-1487_100-1452dupATATATATTATATATGTGTATATATTAT ATATATGT	FNDC3A	ENSG00000102531.16	transcript	ENST00000492622.6	protein_coding	2/25		INFO_REALIGN_3_PRIME	chr13	TogoVar
FNDC3B_chr3_172034578_172406669	172349367	T T	TTTTTGTA others(29): Show TTTTTGTATTTTCAGGACTGTTTTAATTAAGTACCAA	intron_variant intron_variant	MODIFIER	HG01256.hp1 HG01256.hp1	a0002 a0002	a0002c0004 a0002c0004	a0002c0004t0001 a0002c0004t0001	a0002c0004t0001g0071 a0002c0004t0001g0071	1	196	0.0051	36	c.251 others(55): Show c.2514+2007_2514+2042dupTTTTGTATTTTCAGGACTGTTTTAAT TAAGTACCAA	FNDC3B	ENSG00000075420.13	transcript	ENST00000415807.7	protein_coding	21/25		INFO_REALIGN_3_PRIME	chr3	TogoVar
FNIP1_chr5_131636714_131802017	131693307	T T	TATATACA others(29): Show TATATACATATATATATATACATATATATATATATAC	intron_variant intron_variant	MODIFIER	HG02976.hp1 HG03098.hp1 HG03130.hp1 HG02976.hp1 HG03098.hp1 HG03130.hp1	a0004 a0004	a0004c0007 a0004c0007	a0004c0007t0001 a0004c0007t0001	a0004c0007t0001g0174 a0004c0007t0001g0181 a0004c0007t0001g0182 a0004c0007t0001g0174 a0004c0007t0001g0181 a0004c0007t0001g0182	3	328	0.0092	36	c.120 others(55): Show c.1202+5609_1202+5610insGTATATATATATATATGTATATATAT ATATGTATAT	FNIP1	ENSG00000217128.13	transcript	ENST00000510461.6	protein_coding	11/17			chr5	TogoVar
FNIP2_chr4_158764026_158913050	158875515	G G	GATATATA others(29): Show GATATATATATATATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG02109.hp2 HG03471.hp2 NA18986.hp1 others(1): Show HG02109.hp2 HG03471.hp2 NA18986.hp1 NA19085.hp1	a0001 a0003 a0001 a0003	a0001c0001 a0003c0004 a0001c0001 a0003c0004	a0001c0001t0001 a0003c0004t0001 a0001c0001t0001 a0003c0004t0001	a0001c0001t0001g0042 a0001c0001t0001g0090 a0001c0001t0001g0146 others(1): Show a0001c0001t0001g0042 a0001c0001t0001g0090 a0001c0001t0001g0146 a0003c0004t0001g0057	4	254	0.0158	36	c.294 others(55): Show c.2949+5072_2949+5073insATATATATATATATATATATATATAT ATATATATAT	FNIP2	ENSG00000052795.13	transcript	ENST00000264433.11	protein_coding	14/16		INFO_REALIGN_3_PRIME	chr4	TogoVar
FNTB_chr14_64981895_65067650	65031979	C C	CGTGTGTG others(29): Show CGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT	intron_variant intron_variant	MODIFIER	HG01175.hp2 HG01175.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0044 a0001c0001t0002g0044	1	360	0.0028	36	c.606 others(51): Show c.606-626_606-591dupGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT GTGTGT	FNTB	ENSG00000257365.8	transcript	ENST00000246166.3	protein_coding	6/11		INFO_REALIGN_3_PRIME	chr14	TogoVar
FOCAD_chr9_20679259_21000950	20986266	A A	ATTTTTTT others(29): Show ATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	splice_region_variant others(1): Show splice_region_variant intron_variant	LOW	HG00099.hp2 HG00140.hp1 HG00639.hp1 HG00099.hp2 HG00140.hp1 HG00639.hp1	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0001 a0002c0002t0001	a0002c0002t0001g0247 a0002c0002t0001g0249 a0002c0002t0001g0266 a0002c0002t0001g0247 a0002c0002t0001g0249 a0002c0002t0001g0266	3	320	0.0094	36	c.472 others(49): Show c.4729-5_4729-4insTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT TTTT	FOCAD	ENSG00000188352.13	transcript	ENST00000338382.11	protein_coding	39/43		INFO_REALIGN_3_PRIME	chr9	TogoVar
FOXI1_chr5_170100897_170114734	170105348	G G	GGAGAGGG others(29): Show GGAGAGGGGGGGGGGGGGAGAGAGAGAGAGAGAGAGA	upstream_gene_variant upstream_gene_variant	MODIFIER	NA19240.hp1 NA19240.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0002 a0001c0002t0002	a0001c0002t0002g0002 a0001c0002t0002g0002	1	412	0.0024	36	c.-61 others(45): Show c.-610_-609insGAGAGGGGGGGGGGGGGAGAGAGAGAGAGAGAGAGA	FOXI1	ENSG00000168269.10	transcript	ENST00000306268.8	protein_coding		548		chr5	TogoVar
FOXI1_chr5_170100897_170114734	170105348	G G	GGAGGGGG others(29): Show GGAGGGGGGGGGGGGGGGAGAGAGAGAGAGAGAGAGA	upstream_gene_variant upstream_gene_variant	MODIFIER	NA18972.hp2 NA18972.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0002 a0001c0002t0002	a0001c0002t0002g0004 a0001c0002t0002g0004	1	412	0.0024	36	c.-61 others(45): Show c.-610_-609insGAGGGGGGGGGGGGGGGAGAGAGAGAGAGAGAGAGA	FOXI1	ENSG00000168269.10	transcript	ENST00000306268.8	protein_coding		548		chr5	TogoVar
FOXI1_chr5_170100897_170114734	170105356	G G	GGGGGGGG others(29): Show GGGGGGGGGGGGAGAGAGAGAGAGAGAGAGAGAGAGA	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02004.hp2 NA19002.hp2 NA19012.hp2 others(2): Show HG02004.hp2 NA19002.hp2 NA19012.hp2 NA19066.hp1 NA19070.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0002 a0001c0002t0002	a0001c0002t0002g0004 a0001c0002t0002g0004	5	412	0.0121	36	c.-60 others(45): Show c.-602_-601insGGGGGGGGGGGAGAGAGAGAGAGAGAGAGAGAGAGA	FOXI1	ENSG00000168269.10	transcript	ENST00000306268.8	protein_coding		540		chr5	TogoVar
FOXI1_chr5_170100897_170114734	170105356	G G	GGGGGGGG others(29): Show GGGGGGGGGGGGGGGGGGAGAGAGAGAGAGAGAGAGA	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00558.hp1 HG00558.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0002 a0001c0002t0002	a0001c0002t0002g0004 a0001c0002t0002g0004	1	412	0.0024	36	c.-60 others(45): Show c.-602_-601insGGGGGGGGGGGGGGGGGAGAGAGAGAGAGAGAGAGA	FOXI1	ENSG00000168269.10	transcript	ENST00000306268.8	protein_coding		540		chr5	TogoVar
FOXI1_chr5_170100897_170114734	170105368	G G	GGAGAGAG others(29): Show GGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01257.hp1 HG01934.hp1 HG02258.hp1 others(9): Show HG01257.hp1 HG01934.hp1 HG02258.hp1 HG02735.hp2 HG02886.hp1 HG03491.hp1 HG03688.hp1 HG04115.hp1 HG04228.hp2 NA18942.hp2 NA19077.hp1 NA20805.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0003 a0001c0001t0008 a0001c0001t0001 a0001c0001t0003 a0001c0001t0008	a0001c0001t0001g0001 a0001c0001t0001g0003 a0001c0001t0003g0001 others(1): Show a0001c0001t0001g0001 a0001c0001t0001g0003 a0001c0001t0003g0001 a0001c0001t0008g0005	12	412	0.0291	36	c.-59 others(45): Show c.-590_-589insGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA	FOXI1	ENSG00000168269.10	transcript	ENST00000306268.8	protein_coding		528		chr5	TogoVar
FOXI1_chr5_170100897_170114734	170105370	G G	GGAGAGAG others(29): Show GGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01258.hp2 HG01975.hp2 HG01993.hp1 others(4): Show HG01258.hp2 HG01975.hp2 HG01993.hp1 HG02717.hp2 HG03654.hp2 HG06807.hp2 NA18943.hp1	a0001 a0001	a0001c0001 a0001c0003 a0001c0001 a0001c0003	a0001c0001t0001 a0001c0001t0007 a0001c0003t0005 a0001c0001t0001 a0001c0001t0007 a0001c0003t0005	a0001c0001t0001g0001 a0001c0001t0007g0005 a0001c0001t0007g0015 others(1): Show a0001c0001t0001g0001 a0001c0001t0007g0005 a0001c0001t0007g0015 a0001c0003t0005g0007	7	412	0.0170	36	c.-58 others(45): Show c.-588_-587insGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA	FOXI1	ENSG00000168269.10	transcript	ENST00000306268.8	protein_coding		526		chr5	TogoVar
FOXI1_chr5_170100897_170114734	170105394	A A	AGAGAGAG others(29): Show AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGG	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02451.hp1 HG02451.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0007 a0001c0001t0007	a0001c0001t0007g0005 a0001c0001t0007g0005	1	412	0.0024	36	c.-56 others(45): Show c.-564_-563insGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGG	FOXI1	ENSG00000168269.10	transcript	ENST00000306268.8	protein_coding		502		chr5	TogoVar
FOXJ3_chr1_42171548_42340235	42222034	G G	GGGGAGGG others(29): Show GGGGAGGGGGAGGGGGAGGGGGAGGGGGAGGAGAAGA	intron_variant intron_variant	MODIFIER	NA18942.hp2 NA18942.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0194 a0001c0001t0001g0194	1	332	0.0030	36	c.528 others(53): Show c.528+5848_528+5849insTCTTCTCCTCCCCCTCCCCCTCCCCCTC CCCCTCCC	FOXJ3	ENSG00000198815.9	transcript	ENST00000361346.6	protein_coding	5/12			chr1	TogoVar
FOXK2_chr17_82514732_82609602	82599213	T T	TCCGCCTC others(29): Show TCCGCCTCCCGAGTAGTTGGGACTATAGGCCCCCACC	intron_variant intron_variant	MODIFIER	NA19079.hp2 NA19079.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0004	a0001c0001t0004g0281 a0001c0001t0004g0281	1	308	0.0033	36	c.178 others(55): Show c.1787-2089_1787-2088insCGCCTCCCGAGTAGTTGGGACTATAG GCCCCCACCC	FOXK2	ENSG00000141568.21	transcript	ENST00000335255.10	protein_coding	8/8		INFO_REALIGN_3_PRIME	chr17	TogoVar
FOXK2_chr17_82514732_82609602	82599215	A A	CGCCTCCC others(29): Show CGCCTCCCGAGTAGTTGGGACTATAGGCCCCCACCCA	intron_variant intron_variant	MODIFIER	HG00621.hp2 HG00621.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0004	a0001c0001t0004g0263 a0001c0001t0004g0263	1	308	0.0033	36	c.178 others(55): Show c.1787-2089_1787-2088insCGCCTCCCGAGTAGTTGGGACTATAG GCCCCCACCC	FOXK2	ENSG00000141568.21	transcript	ENST00000335255.10	protein_coding	8/8			chr17	TogoVar
FOXN3_chr14_89151177_89422233	89360786	T T	TCCACCAC others(29): Show TCCACCACCACCTCCACCACCACCACCTCCAGCACCA	intron_variant intron_variant	MODIFIER	HG00597.hp1 HG03704.hp2 NA18612.hp2 others(2): Show HG00597.hp1 HG03704.hp2 NA18612.hp2 NA18964.hp2 NA18995.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0008 a0001c0001t0025 a0001c0001t0001 a0001c0001t0008 a0001c0001t0025	a0001c0001t0001g0142 a0001c0001t0001g0227 a0001c0001t0008g0022 others(2): Show a0001c0001t0001g0142 a0001c0001t0001g0227 a0001c0001t0008g0022 a0001c0001t0008g0041 a0001c0001t0025g0228	5	230	0.0217	36	c.544 others(53): Show c.544-9979_544-9978insTGGTGCTGGAGGTGGTGGTGGTGGAGGT GGTGGTGG	FOXN3	ENSG00000053254.16	transcript	ENST00000557258.6	protein_coding	2/5			chr14	TogoVar
FOXN3_chr14_89151177_89422233	89360840	T T	TCCACCAC others(29): Show TCCACCACCACCACCACTACCACCACCACCACCACCA	intron_variant intron_variant	MODIFIER	NA19060.hp1 NA19060.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0022 a0001c0001t0022	a0001c0001t0022g0043 a0001c0001t0022g0043	1	230	0.0044	36	c.544 others(55): Show c.544-10033_544-10032insTGGTGGTGGTGGTGGTGGTAGTGGTG GTGGTGGTGG	FOXN3	ENSG00000053254.16	transcript	ENST00000557258.6	protein_coding	2/5			chr14	TogoVar
FOXN3_chr14_89151177_89422233	89360882	A A	ACCACCAC others(29): Show ACCACCACCTCCAGCACCACCTCCACCACCACCACCT	intron_variant intron_variant	MODIFIER	HG00558.hp1 HG00558.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0007 a0001c0001t0007	a0001c0001t0007g0036 a0001c0001t0007g0036	1	230	0.0044	36	c.544 others(55): Show c.544-10075_544-10074insAGGTGGTGGTGGTGGAGGTGGTGCTG GAGGTGGTGG	FOXN3	ENSG00000053254.16	transcript	ENST00000557258.6	protein_coding	2/5			chr14	TogoVar
FOXN3_chr14_89151177_89422233	89360891	A A	ACCACCAC others(29): Show ACCACCACCACCTCCAGCACCACCTCCAGCACTACCT	intron_variant intron_variant	MODIFIER	HG02886.hp2 HG02886.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0016 a0001c0001t0016	a0001c0001t0016g0083 a0001c0001t0016g0083	1	230	0.0044	36	c.544 others(55): Show c.544-10084_544-10083insAGGTAGTGCTGGAGGTGGTGCTGGAG GTGGTGGTGG	FOXN3	ENSG00000053254.16	transcript	ENST00000557258.6	protein_coding	2/5			chr14	TogoVar
FOXN3_chr14_89151177_89422233	89360891	A A	ACCACTAC others(29): Show ACCACTACCACCTCCAGCACCACCTCCAGCACCACCT	intron_variant intron_variant	MODIFIER	HG01070.hp2 HG03239.hp1 HG01070.hp2 HG03239.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0018 a0001c0001t0001 a0001c0001t0018	a0001c0001t0001g0035 a0001c0001t0018g0091 a0001c0001t0001g0035 a0001c0001t0018g0091	2	230	0.0087	36	c.544 others(55): Show c.544-10084_544-10083insAGGTGGTGCTGGAGGTGGTGCTGGAG GTGGTAGTGG	FOXN3	ENSG00000053254.16	transcript	ENST00000557258.6	protein_coding	2/5			chr14	TogoVar
FOXN3_chr14_89151177_89422233	89360895	C C	CCACCTCC others(29): Show CCACCTCCACCACTACCACCTCCAGCACCACCTCCAG	intron_variant intron_variant	MODIFIER	HG00639.hp2 HG00639.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0101 a0001c0001t0001g0101	1	230	0.0044	36	c.544 others(55): Show c.544-10088_544-10087insCTGGAGGTGGTGCTGGAGGTGGTAGT GGTGGAGGTG	FOXN3	ENSG00000053254.16	transcript	ENST00000557258.6	protein_coding	2/5			chr14	TogoVar
FOXN3_chr14_89151177_89422233	89360930	T T	TCCACCAC others(29): Show TCCACCACCACCTCCACCACCACCACCTCCAGCACCA	intron_variant intron_variant	MODIFIER	NA18943.hp2 NA18943.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0004	a0001c0001t0004g0087 a0001c0001t0004g0087	1	230	0.0044	36	c.544 others(55): Show c.544-10123_544-10122insTGGTGCTGGAGGTGGTGGTGGTGGAG GTGGTGGTGG	FOXN3	ENSG00000053254.16	transcript	ENST00000557258.6	protein_coding	2/5			chr14	TogoVar
FOXN3_chr14_89151177_89422233	89360948	A A	AGCACTAC others(29): Show AGCACTACCTCCACCACCACCACCTCCACCACCACCT	intron_variant intron_variant	MODIFIER	NA19007.hp1 NA19007.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0007 a0001c0001t0007	a0001c0001t0007g0014 a0001c0001t0007g0014	1	230	0.0044	36	c.544 others(55): Show c.544-10141_544-10140insAGGTGGTGGTGGAGGTGGTGGTGGTG GAGGTAGTGC	FOXN3	ENSG00000053254.16	transcript	ENST00000557258.6	protein_coding	2/5			chr14	TogoVar
FOXN3_chr14_89151177_89422233	89361054	G G	GCACCACC others(29): Show GCACCACCACCACCACCACCTCCACCACCTCCACCAC	intron_variant intron_variant	MODIFIER	NA18945.hp2 NA18945.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0010 a0001c0001t0010	a0001c0001t0010g0040 a0001c0001t0010g0040	1	230	0.0044	36	c.544 others(55): Show c.544-10247_544-10246insGTGGTGGAGGTGGTGGAGGTGGTGGT GGTGGTGGTG	FOXN3	ENSG00000053254.16	transcript	ENST00000557258.6	protein_coding	2/5			chr14	TogoVar
FOXN3_chr14_89151177_89422233	89361143	A A	ACCACCAC others(29): Show ACCACCACCTCCACCACTACCACCTCCAGCACTACCT	intron_variant intron_variant	MODIFIER	NA18964.hp2 NA18964.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0025 a0001c0001t0025	a0001c0001t0025g0228 a0001c0001t0025g0228	1	230	0.0044	36	c.544 others(55): Show c.544-10336_544-10335insAGGTAGTGCTGGAGGTGGTAGTGGTG GAGGTGGTGG	FOXN3	ENSG00000053254.16	transcript	ENST00000557258.6	protein_coding	2/5			chr14	TogoVar
FOXN3_chr14_89151177_89422233	89361260	A A	ACCACCAC others(29): Show ACCACCACCTCCACCACCACCACCTCCAGCACCACCT	intron_variant intron_variant	MODIFIER	HG03492.hp2 HG03492.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0027 a0001c0001t0027	a0001c0001t0027g0200 a0001c0001t0027g0200	1	230	0.0044	36	c.544 others(55): Show c.544-10453_544-10452insAGGTGGTGCTGGAGGTGGTGGTGGTG GAGGTGGTGG	FOXN3	ENSG00000053254.16	transcript	ENST00000557258.6	protein_coding	2/5			chr14	TogoVar
FOXN3_chr14_89151177_89422233	89361260	A A	AGCACCAC others(29): Show AGCACCACCTCCACCACTACCACCTCCAGCACCACCT	intron_variant intron_variant	MODIFIER	HG01517.hp1 HG01517.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0005 a0001c0001t0005	a0001c0001t0005g0099 a0001c0001t0005g0099	1	230	0.0044	36	c.544 others(55): Show c.544-10453_544-10452insAGGTGGTGCTGGAGGTGGTAGTGGTG GAGGTGGTGC	FOXN3	ENSG00000053254.16	transcript	ENST00000557258.6	protein_coding	2/5			chr14	TogoVar
FOXN3_chr14_89151177_89422233	89361263	A A	ACCACCAC others(29): Show ACCACCACCTCCACCACCACCACCTCCACCACCACCT	intron_variant intron_variant	MODIFIER	NA18947.hp1 NA18947.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0007 a0001c0001t0007	a0001c0001t0007g0205 a0001c0001t0007g0205	1	230	0.0044	36	c.544 others(55): Show c.544-10456_544-10455insAGGTGGTGGTGGAGGTGGTGGTGGTG GAGGTGGTGG	FOXN3	ENSG00000053254.16	transcript	ENST00000557258.6	protein_coding	2/5			chr14	TogoVar
FOXN3_chr14_89151177_89422233	89361268	C C	CTCCACCA others(29): Show CTCCACCACTACCACCTCCACCACCACCTCCACCACT	intron_variant intron_variant	MODIFIER	HG02486.hp2 HG02486.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0016 a0001c0001t0003g0016	1	230	0.0044	36	c.544 others(55): Show c.544-10461_544-10460insAGTGGTGGAGGTGGTGGTGGAGGTGG TAGTGGTGGA	FOXN3	ENSG00000053254.16	transcript	ENST00000557258.6	protein_coding	2/5			chr14	TogoVar
FOXN3_chr14_89151177_89422233	89361302	T T	TCCACCAC others(29): Show TCCACCACCACCTCCACCACCACCACCTCCAGCACCA	intron_variant intron_variant	MODIFIER	HG00642.hp1 HG00642.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0043 a0001c0001t0043	a0001c0001t0043g0126 a0001c0001t0043g0126	1	230	0.0044	36	c.544 others(55): Show c.544-10495_544-10494insTGGTGCTGGAGGTGGTGGTGGTGGAG GTGGTGGTGG	FOXN3	ENSG00000053254.16	transcript	ENST00000557258.6	protein_coding	2/5			chr14	TogoVar
FOXN3_chr14_89151177_89422233	89361321	G G	GCACCACC others(29): Show GCACCACCACCTCCAGCACCACCTCCACCACCACCTC	intron_variant intron_variant	MODIFIER	NA18997.hp1 NA18997.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0007 a0001c0001t0007	a0001c0001t0007g0080 a0001c0001t0007g0080	1	230	0.0044	36	c.544 others(55): Show c.544-10514_544-10513insGAGGTGGTGGTGGAGGTGGTGCTGGA GGTGGTGGTG	FOXN3	ENSG00000053254.16	transcript	ENST00000557258.6	protein_coding	2/5			chr14	TogoVar
FOXN3_chr14_89151177_89422233	89361648	A A	ACCACCAC others(29): Show ACCACCACCTCCACCACCACCACCTCCACCACCACCT	intron_variant intron_variant	MODIFIER	HG01884.hp2 HG01884.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0085 a0001c0001t0001g0085	1	230	0.0044	36	c.544 others(55): Show c.544-10841_544-10840insAGGTGGTGGTGGAGGTGGTGGTGGTG GAGGTGGTGG	FOXN3	ENSG00000053254.16	transcript	ENST00000557258.6	protein_coding	2/5			chr14	TogoVar
FOXN3_chr14_89151177_89422233	89361649	C C	CCACCTCC others(29): Show CCACCTCCACCACCACCTCCACCACCACCACCTCCAG	intron_variant intron_variant	MODIFIER	NA18967.hp1 NA18997.hp1 NA18967.hp1 NA18997.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0007 a0001c0001t0001 a0001c0001t0007	a0001c0001t0001g0081 a0001c0001t0007g0080 a0001c0001t0001g0081 a0001c0001t0007g0080	2	230	0.0087	36	c.544 others(55): Show c.544-10842_544-10841insCTGGAGGTGGTGGTGGTGGAGGTGGT GGTGGAGGTG	FOXN3	ENSG00000053254.16	transcript	ENST00000557258.6	protein_coding	2/5			chr14	TogoVar
FOXN3_chr14_89151177_89422233	89361781	G G	GCACTACC others(29): Show GCACTACCTCCACCACCACCACCTCCAGCACCACCTC	intron_variant intron_variant	MODIFIER	HG03704.hp2 NA18960.hp1 NA18983.hp1 HG03704.hp2 NA18960.hp1 NA18983.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0026 a0001c0001t0001 a0001c0001t0026	a0001c0001t0001g0121 a0001c0001t0001g0142 a0001c0001t0026g0198 a0001c0001t0001g0121 a0001c0001t0001g0142 a0001c0001t0026g0198	3	230	0.0130	36	c.544 others(55): Show c.544-10974_544-10973insGAGGTGGTGCTGGAGGTGGTGGTGGT GGAGGTAGTG	FOXN3	ENSG00000053254.16	transcript	ENST00000557258.6	protein_coding	2/5			chr14	TogoVar

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Search Results (Total: 8848 hits)