Joint Open Genome and Omics Platform (JoGo)

Search by Variant

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Chr

Chromosome name (e.g., chr11).

Snpeff genename

Exact SnpEff gene name.

Sampleids

Target sampleid (e.g. HG02615).

Snpeff haplotype class

Haplotype-annotation class (e.g., ahapid, ahapid+chapid).

Snpeff annotation impact

Exact impact level (e.g., HIGH, MODERATE, LOW).

Snpeff annotation impact detail

Keyword match in SnpEff annotation.

Hapid

One or more haplotype IDs (comma-separated; e.g., a0001, a01, a0001c0001, a01c02, a1c2, a0001c0001t0005, a0001c0001t0005g0018).

Samplehapid

Sample haplotype IDs to include (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

No_hapid

Haplotype IDs to exclude (comma-separated; e.g., a0001, a0002, a0001c0001, a0001c0001t0005, a1, a01).

No_samplehapid

Sample haplotype IDs to exclude (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

Start

Start position (GRCh38).

End

End position (GRCh38).

Minac

Minimum alternate allele count (≥).

Maxac

Maximum alternate allele count (≤).

Minlen

Minimum variant length (≥).

Maxlen

Maximum variant length (≤).

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regionname	pos	ref	alt	annotation	impact	samples	ahapids	achapids	acthapids	actghapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	external
LRP1B_chr2_140226423_142136016	141032826	C C	CATACATA others(29): Show CATACATACATATATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG02723.hp1 HG02723.hp1	a0001 a0001	a0001c0011 a0001c0011	a0001c0011t0001 a0001c0011t0001	a0001c0011t0001g0014 a0001c0011t0001g0014	1	28	0.0357	36	c.179 others(57): Show c.1790-12725_1790-12724insATATATATATATATATATATATAT ATATGTATGTAT	LRP1B	ENSG00000168702.18	transcript	ENST00000389484.8	protein_coding	11/90			chr2	TogoVar
LRP1B_chr2_140226423_142136016	141517271	C C	CACACACA others(29): Show CACACACACACACACATACACACACACACACACACAT	intron_variant intron_variant	MODIFIER	HG02145.hp1 HG02486.hp2 HG02630.hp2 others(1): Show HG02145.hp1 HG02486.hp2 HG02630.hp2 HG02723.hp1	a0001 a0001	a0001c0011 a0001c0017 a0001c0022 others(1): Show a0001c0011 a0001c0017 a0001c0022 a0001c0024	a0001c0011t0001 a0001c0017t0006 a0001c0022t0004 others(1): Show a0001c0011t0001 a0001c0017t0006 a0001c0022t0004 a0001c0024t0005	a0001c0011t0001g0014 a0001c0017t0006g0015 a0001c0022t0004g0004 others(1): Show a0001c0011t0001g0014 a0001c0017t0006g0015 a0001c0022t0004g0004 a0001c0024t0005g0009	4	28	0.1429	36	c.206 others(55): Show c.206-36739_206-36738insATGTGTGTGTGTGTGTGTGTATGTGT GTGTGTGTGT	LRP1B	ENSG00000168702.18	transcript	ENST00000389484.8	protein_coding	2/90			chr2	TogoVar
LRP1B_chr2_140226423_142136016	141753263	C C	CATATATA others(29): Show CATATATATATATATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG01261.hp2 HG01261.hp2	a0001 a0001	a0001c0026 a0001c0026	a0001c0026t0001 a0001c0026t0001	a0001c0026t0001g0025 a0001c0026t0001g0025	1	28	0.0357	36	c.205 others(55): Show c.205+57015_205+57016insATATATATATATATATATATATATAT ATATATATAT	LRP1B	ENSG00000168702.18	transcript	ENST00000389484.8	protein_coding	2/90			chr2	TogoVar
LRP3_chr19_33189330_33213864	33212003	A A	ATGCATTA others(29): Show ATGCATTATGCATATGTATATGTAAATGCATATGTAT	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02040.hp2 HG02040.hp2	a0002 a0002	a0002c0003 a0002c0003	a0002c0003t0001 a0002c0003t0001	a0002c0003t0001g0002 a0002c0003t0001g0002	1	412	0.0024	36	c.44 others(47): Show c.4428_*4429insTGCATTATGCATATGTATATGTAAATGCATATGT AT	LRP3	ENSG00000130881.14	transcript	ENST00000253193.9	protein_coding		3140		chr19	TogoVar
LRP8_chr1_53237364_53333070	53330505	A A	AAAGGAAG others(29): Show AAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGG	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02055.hp1 HG02055.hp1	a0001 a0001	a0001c0004 a0001c0004	a0001c0004t0060 a0001c0004t0060	a0001c0004t0060g0251 a0001c0004t0060g0251	1	296	0.0034	36	c.-25 others(47): Show c.-2594_-2593insCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCC TT	LRP8	ENSG00000157193.18	transcript	ENST00000306052.12	protein_coding		2436		chr1	TogoVar
LRPAP1_chr4_3498612_3537422	3522540	G G	GCCCTGCC others(29): Show GCCCTGCCTCTGGGGAGGACGGACACCATCCCACACC	intron_variant intron_variant	MODIFIER	NA18940.hp2 NA20300.hp2 NA18940.hp2 NA20300.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0051 a0001c0001t0003 a0001c0001t0051	a0001c0001t0003g0284 a0001c0001t0051g0219 a0001c0001t0003g0284 a0001c0001t0051g0219	2	420	0.0048	36	c.350 others(53): Show c.350-2348_350-2347insGGTGTGGGATGGTGTCCGTCCTCCCCAG AGGCAGGG	LRPAP1	ENSG00000163956.13	transcript	ENST00000650182.1	protein_coding	2/7			chr4	TogoVar
LRPAP1_chr4_3498612_3537422	3534613	G G	GGTGGTGG others(29): Show GGTGGTGGGCACACAGGCATGCATTTTTCCTTATCTT	upstream_gene_variant upstream_gene_variant	MODIFIER	HG03486.hp1 HG03486.hp1	a0002 a0002	a0002c0003 a0002c0003	a0002c0003t0047 a0002c0003t0047	a0002c0003t0047g0057 a0002c0003t0047g0057	1	420	0.0024	36	c.-22 others(47): Show c.-2202_-2201insAAGATAAGGAAAAATGCATGCCTGTGTGCCCACC AC	LRPAP1	ENSG00000163956.13	transcript	ENST00000650182.1	protein_coding		2192		chr4	TogoVar
LRRC18_chr10_48904480_48944840	48923496	G G	GTATATAT others(29): Show GTATATATATATATATATATATATATATATATATATA	intron_variant intron_variant	MODIFIER	HG01891.hp2 HG02886.hp2 HG03540.hp1 HG01891.hp2 HG02886.hp2 HG03540.hp1	a0002 a0003 a0002 a0003	a0002c0002 a0003c0003 a0003c0005 a0002c0002 a0003c0003 a0003c0005	a0002c0002t0001 a0003c0003t0002 a0003c0005t0002 a0002c0002t0001 a0003c0003t0002 a0003c0005t0002	a0002c0002t0001g0272 a0003c0003t0002g0037 a0003c0005t0002g0335 a0002c0002t0001g0272 a0003c0003t0002g0037 a0003c0005t0002g0335	3	420	0.0071	36	c.-77 others(53): Show c.-77-9265_-77-9264insTATATATATATATATATATATATATATA TATATATA	LRRC18	ENSG00000165383.12	transcript	ENST00000374160.8	protein_coding	2/3			chr10	TogoVar
LRRC18_chr10_48904480_48944840	48923500	A A	ATATATAT others(29): Show ATATATATATATATATATATATATATATATATATATG	intron_variant intron_variant	MODIFIER	HG02145.hp1 HG02145.hp1	a0008 a0008	a0008c0014 a0008c0014	a0008c0014t0010 a0008c0014t0010	a0008c0014t0010g0366 a0008c0014t0010g0366	1	420	0.0024	36	c.-77 others(53): Show c.-77-9269_-77-9268insCATATATATATATATATATATATATATA TATATATA	LRRC18	ENSG00000165383.12	transcript	ENST00000374160.8	protein_coding	2/3			chr10	TogoVar
LRRC18_chr10_48904480_48944840	48923506	A A	ATATATAT others(29): Show ATATATATATATATATATATATATATATGTATGTATG	intron_variant intron_variant	MODIFIER	HG00140.hp2 HG01257.hp2 HG01361.hp1 HG00140.hp2 HG01257.hp2 HG01361.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0015 a0001c0001t0001g0089 a0001c0001t0001g0015 a0001c0001t0001g0089	3	420	0.0071	36	c.-77 others(53): Show c.-77-9275_-77-9274insCATACATACATATATATATATATATATA TATATATA	LRRC18	ENSG00000165383.12	transcript	ENST00000374160.8	protein_coding	2/3			chr10	TogoVar
LRRC27_chr10_132327193_132386508	132364365	G G	GCTTACAC others(29): Show GCTTACACCCACACTTACATCTACCTCCACGCCCACA	intron_variant intron_variant	MODIFIER	HG02965.hp2 HG02965.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0047 a0001c0001t0047	a0001c0001t0047g0286 a0001c0001t0047g0286	1	290	0.0035	36	c.129 others(55): Show c.1290-1048_1290-1047insACTTACATCTACCTCCACGCCCACAC TTACACCCAC	LRRC27	ENSG00000148814.18	transcript	ENST00000368614.8	protein_coding	9/10		INFO_REALIGN_3_PRIME	chr10	TogoVar
LRRC27_chr10_132327193_132386508	132364365	G G	GCTTACAC others(29): Show GCTTACACCCACCCTTACATCTACCTCCACACCCACA	intron_variant intron_variant	MODIFIER	HG01106.hp1 HG02135.hp2 HG01106.hp1 HG02135.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0043 a0001c0001t0001 a0001c0001t0043	a0001c0001t0001g0049 a0001c0001t0043g0041 a0001c0001t0001g0049 a0001c0001t0043g0041	2	290	0.0069	36	c.129 others(55): Show c.1290-1046_1290-1045insTTACATCTACCTCCACACCCACACTT ACACCCACCC	LRRC27	ENSG00000148814.18	transcript	ENST00000368614.8	protein_coding	9/10		INFO_REALIGN_3_PRIME	chr10	TogoVar
LRRC27_chr10_132327193_132386508	132364365	G G	GCTTACAC others(29): Show GCTTACACCCACCCTTACATCTACCTCCACGCCCACA	intron_variant intron_variant	MODIFIER	HG02300.hp1 HG02300.hp1	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0007 a0001c0003t0007	a0001c0003t0007g0093 a0001c0003t0007g0093	1	290	0.0035	36	c.129 others(55): Show c.1290-1046_1290-1045insTTACATCTACCTCCACGCCCACACTT ACACCCACCC	LRRC27	ENSG00000148814.18	transcript	ENST00000368614.8	protein_coding	9/10		INFO_REALIGN_3_PRIME	chr10	TogoVar
LRRC27_chr10_132327193_132386508	132364368	T T	TACACCCA others(29): Show TACACCCACGCTTACATCTACCTCCACGCCCACACTC	intron_variant intron_variant	MODIFIER	HG01358.hp2 HG03017.hp1 HG03492.hp1 others(4): Show HG01358.hp2 HG03017.hp1 HG03492.hp1 NA18942.hp1 NA19000.hp1 NA19004.hp1 NA19004.hp2	a0001 a0001	a0001c0001 a0001c0010 a0001c0001 a0001c0010	a0001c0001t0001 a0001c0001t0031 a0001c0010t0001 a0001c0001t0001 a0001c0001t0031 a0001c0010t0001	a0001c0001t0001g0065 a0001c0001t0001g0138 a0001c0001t0001g0151 others(4): Show a0001c0001t0001g0065 a0001c0001t0001g0138 a0001c0001t0001g0151 a0001c0001t0001g0163 a0001c0001t0001g0197 a0001c0001t0031g0221 a0001c0010t0001g0110	7	290	0.0241	36	c.129 others(55): Show c.1290-1048_1290-1047insGCTTACATCTACCTCCACGCCCACAC TCACACCCAC	LRRC27	ENSG00000148814.18	transcript	ENST00000368614.8	protein_coding	9/10		INFO_REALIGN_3_PRIME	chr10	TogoVar
LRRC27_chr10_132327193_132386508	132364382	C C	CTTACACC others(29): Show CTTACACCCACGCTTACATCTACCTCCACACCCACAA	intron_variant intron_variant	MODIFIER	NA18998.hp2 NA18998.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0182 a0001c0001t0002g0182	1	290	0.0035	36	c.129 others(55): Show c.1290-1032_1290-1031insGCTTACATCTACCTCCACACCCACAA TTACACCCAC	LRRC27	ENSG00000148814.18	transcript	ENST00000368614.8	protein_coding	9/10		INFO_REALIGN_3_PRIME	chr10	TogoVar
LRRC27_chr10_132327193_132386508	132364461	C C	CCACCCAC others(29): Show CCACCCACACTTACACCCACGCTTACATCTACCTCCA	intron_variant intron_variant	MODIFIER	HG00099.hp2 HG00099.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0191 a0001c0001t0002g0191	1	290	0.0035	36	c.129 others(53): Show c.1290-944_1290-943insGCTTACATCTACCTCCACACCCACACTT ACACCCAC	LRRC27	ENSG00000148814.18	transcript	ENST00000368614.8	protein_coding	9/10		INFO_REALIGN_3_PRIME	chr10	TogoVar
LRRC27_chr10_132327193_132386508	132364470	C C	CTTACACC others(29): Show CTTACACCCACCCTTACATCTACCTCCACGCCCACAA	intron_variant intron_variant	MODIFIER	HG00140.hp2 HG01070.hp2 HG00140.hp2 HG01070.hp2	a0002 a0002	a0002c0004 a0002c0004	a0002c0004t0010 a0002c0004t0010	a0002c0004t0010g0014 a0002c0004t0010g0017 a0002c0004t0010g0014 a0002c0004t0010g0017	2	290	0.0069	36	c.129 others(53): Show c.1290-942_1290-941insTTACATCTACCTCCACGCCCACAATTAC ACCCACCC	LRRC27	ENSG00000148814.18	transcript	ENST00000368614.8	protein_coding	9/10		INFO_REALIGN_3_PRIME	chr10	TogoVar
LRRC27_chr10_132327193_132386508	132364472	T T	TACACCCA others(29): Show TACACCCACACTTACATCTACCTCCACACCCACACTC	intron_variant intron_variant	MODIFIER	HG00099.hp1 HG02486.hp2 HG00099.hp1 HG02486.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0002 a0001c0002t0003 a0001c0001t0002 a0001c0002t0003	a0001c0001t0002g0192 a0001c0002t0003g0246 a0001c0001t0002g0192 a0001c0002t0003g0246	2	290	0.0069	36	c.129 others(53): Show c.1290-944_1290-943insACTTACATCTACCTCCACACCCACACTC ACACCCAC	LRRC27	ENSG00000148814.18	transcript	ENST00000368614.8	protein_coding	9/10		INFO_REALIGN_3_PRIME	chr10	TogoVar
LRRC27_chr10_132327193_132386508	132364472	T T	TACACCCA others(29): Show TACACCCACCCTTACATCTACCTCCACACCCACACTC	intron_variant intron_variant	MODIFIER	NA18984.hp2 NA18984.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0004 a0001c0002t0004	a0001c0002t0004g0271 a0001c0002t0004g0271	1	290	0.0035	36	c.129 others(53): Show c.1290-942_1290-941insTTACATCTACCTCCACACCCACACTCAC ACCCACCC	LRRC27	ENSG00000148814.18	transcript	ENST00000368614.8	protein_coding	9/10		INFO_REALIGN_3_PRIME	chr10	TogoVar
LRRC27_chr10_132327193_132386508	132364472	T T	TACACCCA others(29): Show TACACCCACGCTTACATCTACCTCCACACCCACACTC	intron_variant intron_variant	MODIFIER	NA18906.hp2 NA18906.hp2	a0001 a0001	a0001c0005 a0001c0005	a0001c0005t0015 a0001c0005t0015	a0001c0005t0015g0224 a0001c0005t0015g0224	1	290	0.0035	36	c.129 others(53): Show c.1290-944_1290-943insGCTTACATCTACCTCCACACCCACACTC ACACCCAC	LRRC27	ENSG00000148814.18	transcript	ENST00000368614.8	protein_coding	9/10		INFO_REALIGN_3_PRIME	chr10	TogoVar
LRRC27_chr10_132327193_132386508	132364798	C C	CCACCCAC others(29): Show CCACCCACACTTACACCCACCCTTACATCTACCTCCA	intron_variant intron_variant	MODIFIER	HG01358.hp1 HG01358.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0012 a0001c0002t0012	a0001c0002t0012g0205 a0001c0002t0012g0205	1	290	0.0035	36	c.129 others(53): Show c.1290-624_1290-589dupACCCACACTTACACCCACCCTTACATCT ACCTCCAC	LRRC27	ENSG00000148814.18	transcript	ENST00000368614.8	protein_coding	9/10		INFO_REALIGN_3_PRIME	chr10	TogoVar
LRRC27_chr10_132327193_132386508	132364818	C C	CCTTACAC others(29): Show CCTTACACCTACCTCCACACCCACACTTACACTCATG	intron_variant intron_variant	MODIFIER	HG04199.hp2 HG04199.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0004 a0001c0002t0004	a0001c0002t0004g0245 a0001c0002t0004g0245	1	290	0.0035	36	c.129 others(53): Show c.1290-600_1290-599insCCTACCTCCACACCCACACTTACACTCA TGCTTACA	LRRC27	ENSG00000148814.18	transcript	ENST00000368614.8	protein_coding	9/10		INFO_REALIGN_3_PRIME	chr10	TogoVar
LRRC2_chr3_46510385_46571302	46566220	C C	CGGCTGTT others(29): Show CGGCTGTTTACACCGCAGAGGCTGTTTACACCGCAGA	5_prime_UTR_variant 5_prime_UTR_variant	MODIFIER	HG02040.hp1 HG02735.hp1 HG02040.hp1 HG02735.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0024 a0001c0001t0024	a0001c0001t0024g0346 a0001c0001t0024g0347 a0001c0001t0024g0346 a0001c0001t0024g0347	2	364	0.0055	36	c.-99 others(43): Show c.-99_-64dupTCTGCGGTGTAAACAGCCTCTGCGGTGTAAACAGCC	LRRC2	ENSG00000163827.14	transcript	ENST00000395905.8	protein_coding	1/9	14630		chr3	TogoVar
LRRC31_chr3_169834172_169874935	169857415	C C	CATATATA others(29): Show CATATATACATATATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG00099.hp1 HG01070.hp2 HG01168.hp1 others(24): Show HG00099.hp1 HG01070.hp2 HG01168.hp1 HG01257.hp1 HG01258.hp1 HG01993.hp1 HG02040.hp1 HG02040.hp2 HG02056.hp2 HG02132.hp1 HG02280.hp1 HG02698.hp2 HG02886.hp1 HG03492.hp2 HG03540.hp1 HG03688.hp1 HG04184.hp1 NA18945.hp2 NA18951.hp1 NA18970.hp1 NA18970.hp2 NA18973.hp2 NA18985.hp1 NA18997.hp1 NA18999.hp1 NA19055.hp2 NA19063.hp1	a0001 a0004 a0009 a0001 a0004 a0009	a0001c0001 a0001c0002 a0004c0006 others(1): Show a0001c0001 a0001c0002 a0004c0006 a0009c0012	a0001c0001t0001 a0001c0002t0001 a0004c0006t0001 others(1): Show a0001c0001t0001 a0001c0002t0001 a0004c0006t0001 a0009c0012t0001	a0001c0001t0001g0022 a0001c0001t0001g0023 a0001c0001t0001g0099 others(20): Show a0001c0001t0001g0022 a0001c0001t0001g0023 a0001c0001t0001g0099 a0001c0001t0001g0129 a0001c0001t0001g0172 a0001c0001t0001g0191 a0001c0001t0001g0202 a0001c0001t0001g0203 a0001c0001t0001g0208 a0001c0001t0001g0209 a0001c0001t0001g0217 a0001c0001t0001g0218 a0001c0001t0001g0219 a0001c0001t0001g0220 a0001c0001t0001g0235 a0001c0001t0001g0272 a0001c0001t0001g0280 a0001c0001t0001g0282 a0001c0002t0001g0049 a0001c0002t0001g0216 a0004c0006t0001g0008 a0004c0006t0001g0234 a0009c0012t0001g0184	27	322	0.0839	36	c.488 others(51): Show c.488-544_488-543insATATATATATATATATATATATATATATGT ATATAT	LRRC31	ENSG00000114248.10	transcript	ENST00000316428.10	protein_coding	3/8			chr3	TogoVar
LRRC3B_chr3_26617772_26715776	26671373	T T	TAGAGAGA others(29): Show TAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG	intron_variant intron_variant	MODIFIER	HG01361.hp2 NA18989.hp1 HG01361.hp2 NA18989.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0199 a0001c0001t0001g0236 a0001c0001t0001g0199 a0001c0001t0001g0236	2	370	0.0054	36	c.-16 others(57): Show c.-160-38134_-160-38099dupGAGAGAGAGAGAGAGAGAGAGAGA GAGAGAGAGAGA	LRRC3B	ENSG00000179796.13	transcript	ENST00000396641.7	protein_coding	1/1		INFO_REALIGN_3_PRIME	chr3	TogoVar
LRRC3B_chr3_26617772_26715776	26671373	T T	TATATATA others(29): Show TATATATATAGAGAGAGAGAGAGAGAGAGAGAGAGAG	intron_variant intron_variant	MODIFIER	HG02896.hp1 HG02896.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0013 a0001c0001t0001g0013	1	370	0.0027	36	c.-16 others(57): Show c.-160-38139_-160-38138insTATATATAGAGAGAGAGAGAGAGA GAGAGAGAGAGA	LRRC3B	ENSG00000179796.13	transcript	ENST00000396641.7	protein_coding	1/1		INFO_REALIGN_3_PRIME	chr3	TogoVar
LRRC3B_chr3_26617772_26715776	26671373	T T	TATATATA others(29): Show TATATATATATAGAGAGAGAGAGAGAGAGAGAGAGAG	intron_variant intron_variant	MODIFIER	NA19057.hp1 NA19057.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0313 a0001c0001t0001g0313	1	370	0.0027	36	c.-16 others(57): Show c.-160-38139_-160-38138insTATATATATAGAGAGAGAGAGAGA GAGAGAGAGAGA	LRRC3B	ENSG00000179796.13	transcript	ENST00000396641.7	protein_coding	1/1		INFO_REALIGN_3_PRIME	chr3	TogoVar
LRRC3B_chr3_26617772_26715776	26671373	T T	TATATATA others(29): Show TATATATATATATAGAGAGAGAGAGAGAGAGAGAGAG	intron_variant intron_variant	MODIFIER	NA18968.hp2 NA18968.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0312 a0001c0001t0001g0312	1	370	0.0027	36	c.-16 others(57): Show c.-160-38139_-160-38138insTATATATATATAGAGAGAGAGAGA GAGAGAGAGAGA	LRRC3B	ENSG00000179796.13	transcript	ENST00000396641.7	protein_coding	1/1		INFO_REALIGN_3_PRIME	chr3	TogoVar
LRRC3B_chr3_26617772_26715776	26671373	T T	TATATATA others(29): Show TATATATATATATATATATAGAGAGAGAGAGAGAGAG	intron_variant intron_variant	MODIFIER	HG02080.hp1 HG02080.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0136 a0001c0001t0001g0136	1	370	0.0027	36	c.-16 others(57): Show c.-160-38139_-160-38138insTATATATATATATATATAGAGAGA GAGAGAGAGAGA	LRRC3B	ENSG00000179796.13	transcript	ENST00000396641.7	protein_coding	1/1		INFO_REALIGN_3_PRIME	chr3	TogoVar
LRRC3B_chr3_26617772_26715776	26671413	G G	GAGAGAGA others(29): Show GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAC	intron_variant intron_variant	MODIFIER	HG00140.hp2 HG00140.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0002 a0001c0002t0002	a0001c0002t0002g0055 a0001c0002t0002g0055	1	370	0.0027	36	c.-16 others(57): Show c.-160-38099_-160-38098insGAGAGAGAGAGAGAGAGAGAGAGA GAGAGAGAGACA	LRRC3B	ENSG00000179796.13	transcript	ENST00000396641.7	protein_coding	1/1		INFO_REALIGN_3_PRIME	chr3	TogoVar
LRRC4B_chr19_50511892_50573435	50552618	A A	ATCCATTC others(29): Show ATCCATTCATCCATCCGCCCATCCGTCCATCCATCTG	intron_variant intron_variant	MODIFIER	HG00733.hp1 HG00733.hp1	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0001 a0002c0002t0001	a0002c0002t0001g0236 a0002c0002t0001g0236	1	360	0.0028	36	c.-35 others(53): Show c.-35-3746_-35-3745insCAGATGGATGGACGGATGGGCGGATGGA TGAATGGA	LRRC4B	ENSG00000131409.13	transcript	ENST00000652263.1	protein_coding	1/2			chr19	TogoVar
LRRC4B_chr19_50511892_50573435	50552646	G G	GTCCATCC others(29): Show GTCCATCCATCTGTCCATCCATCCATCCATCCATCCA	intron_variant intron_variant	MODIFIER	HG01070.hp1 HG01943.hp2 HG02055.hp2 others(10): Show HG01070.hp1 HG01943.hp2 HG02055.hp2 HG02109.hp2 HG02258.hp1 HG02572.hp1 HG02572.hp2 HG02647.hp1 HG02809.hp1 HG02965.hp2 HG03139.hp1 HG03453.hp1 NA19043.hp1	a0001 a0001	a0001c0001 a0001c0003 a0001c0005 a0001c0001 a0001c0003 a0001c0005	a0001c0001t0001 a0001c0001t0005 a0001c0003t0001 others(1): Show a0001c0001t0001 a0001c0001t0005 a0001c0003t0001 a0001c0005t0001	a0001c0001t0001g0254 a0001c0001t0001g0255 a0001c0001t0001g0256 others(10): Show a0001c0001t0001g0254 a0001c0001t0001g0255 a0001c0001t0001g0256 a0001c0001t0001g0258 a0001c0001t0001g0259 a0001c0001t0001g0264 a0001c0001t0001g0265 a0001c0001t0001g0275 a0001c0001t0001g0276 a0001c0001t0001g0310 a0001c0001t0005g0003 a0001c0003t0001g0088 a0001c0005t0001g0286	13	360	0.0361	36	c.-35 others(53): Show c.-35-3774_-35-3773insTGGATGGATGGATGGATGGATGGACAGA TGGATGGA	LRRC4B	ENSG00000131409.13	transcript	ENST00000652263.1	protein_coding	1/2			chr19	TogoVar
LRRC4C_chr11_40109209_41464652	41244188	T T	TCTATCTA others(29): Show TCTATCTATCTATCTATCTATCTATCTATCTATCTAC	intron_variant intron_variant	MODIFIER	HG03139.hp2 HG03579.hp1 HG03139.hp2 HG03579.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0001 a0001c0002t0001 a0001c0001t0001 a0001c0002t0001	a0001c0001t0001g0038 a0001c0002t0001g0045 a0001c0001t0001g0038 a0001c0002t0001g0045	2	48	0.0417	36	c.-49 others(59): Show c.-496+215242_-496+215243insGTAGATAGATAGATAGATAGAT AGATAGATAGATAG	LRRC4C	ENSG00000148948.8	transcript	ENST00000528697.6	protein_coding	1/6			chr11	TogoVar
LRRC57_chr15_42532829_42553793	42544842	C C	CACACACA others(29): Show CACACACACTATATATATATATATATATATATATATA	intron_variant intron_variant	MODIFIER	HG02145.hp1 HG02145.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0014 a0001c0002t0014	a0001c0002t0014g0149 a0001c0002t0014g0149	1	356	0.0028	36	c.678 others(51): Show c.678+234_678+235insTATATATATATATATATATATATATATAGT GTGTGT	LRRC57	ENSG00000180979.10	transcript	ENST00000397130.8	protein_coding	5/5			chr15	TogoVar
LRRC57_chr15_42532829_42553793	42544842	C C	CACACACT others(29): Show CACACACTATATATATATATATATATATATATATATA	intron_variant intron_variant	MODIFIER	HG01884.hp2 HG01884.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0014 a0001c0001t0014	a0001c0001t0014g0110 a0001c0001t0014g0110	1	356	0.0028	36	c.678 others(51): Show c.678+234_678+235insTATATATATATATATATATATATATATATA GTGTGT	LRRC57	ENSG00000180979.10	transcript	ENST00000397130.8	protein_coding	5/5			chr15	TogoVar
LRRC63_chr13_46206928_46282115	46255645	A A	AATATATA others(29): Show AATATATATATATATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG02129.hp2 HG03471.hp2 NA18964.hp2 others(4): Show HG02129.hp2 HG03471.hp2 NA18964.hp2 NA18985.hp1 NA19060.hp1 NA19066.hp1 NA19072.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0001 a0002c0002t0002 a0002c0002t0005 others(1): Show a0002c0002t0001 a0002c0002t0002 a0002c0002t0005 a0002c0002t0044	a0002c0002t0001g0028 a0002c0002t0001g0163 a0002c0002t0001g0327 others(3): Show a0002c0002t0001g0028 a0002c0002t0001g0163 a0002c0002t0001g0327 a0002c0002t0002g0273 a0002c0002t0005g0263 a0002c0002t0044g0166	7	386	0.0181	36	c.122 others(55): Show c.1226+5175_1226+5176insTATATATATATATATATATATATATA TATATATATA	LRRC63	ENSG00000173988.14	transcript	ENST00000595396.3	protein_coding	7/9		INFO_REALIGN_3_PRIME	chr13	TogoVar
LRRC71_chr1_156915632_156938094	156928363	C C	CTCCTCTT others(29): Show CTCCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCT	intron_variant intron_variant	MODIFIER	HG02015.hp1 HG04204.hp2 NA18957.hp2 others(1): Show HG02015.hp1 HG04204.hp2 NA18957.hp2 NA19084.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0020 a0001c0001t0001g0065 a0001c0001t0001g0071 a0001c0001t0001g0020 a0001c0001t0001g0065 a0001c0001t0001g0071	4	402	0.0100	36	c.996 others(51): Show c.996+361_996+362insCTCTTCTTCTTCTTCTTCTTCTTCTTCTTC TTCTTC	LRRC71	ENSG00000160838.14	transcript	ENST00000337428.8	protein_coding	9/14		INFO_REALIGN_3_PRIME	chr1	TogoVar
LRRC71_chr1_156915632_156938094	156928363	C C	CTCTTCTT others(29): Show CTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCT	intron_variant intron_variant	MODIFIER	HG00621.hp1 HG00642.hp1 HG00741.hp2 others(20): Show HG00621.hp1 HG00642.hp1 HG00741.hp2 HG02015.hp2 HG02129.hp1 HG02698.hp2 HG02809.hp2 HG02965.hp1 HG03195.hp2 HG03486.hp1 HG03688.hp2 HG06807.hp1 NA18747.hp1 NA18944.hp2 NA18952.hp1 NA18952.hp2 NA18955.hp1 NA18973.hp1 NA18999.hp2 NA19005.hp1 NA19011.hp2 NA19056.hp1 NA20300.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0002c0002 a0002c0006 a0001c0001 a0002c0002 a0002c0006	a0001c0001t0001 a0002c0002t0001 a0002c0006t0001 a0001c0001t0001 a0002c0002t0001 a0002c0006t0001	a0001c0001t0001g0046 a0001c0001t0001g0216 a0001c0001t0001g0273 others(16): Show a0001c0001t0001g0046 a0001c0001t0001g0216 a0001c0001t0001g0273 a0001c0001t0001g0287 a0001c0001t0001g0291 a0002c0002t0001g0012 a0002c0002t0001g0023 a0002c0002t0001g0025 a0002c0002t0001g0088 a0002c0002t0001g0093 a0002c0002t0001g0112 a0002c0002t0001g0134 a0002c0002t0001g0161 a0002c0002t0001g0172 a0002c0002t0001g0173 a0002c0002t0001g0197 a0002c0002t0001g0205 a0002c0002t0001g0225 a0002c0006t0001g0012	23	402	0.0572	36	c.996 others(51): Show c.996+368_996+403dupTTCTTCTTCTTCTTCTTCTTCTTCTTCTTC TTCTTC	LRRC71	ENSG00000160838.14	transcript	ENST00000337428.8	protein_coding	9/14		INFO_REALIGN_3_PRIME	chr1	TogoVar
LRRC71_chr1_156915632_156938094	156928404	C C	CTTCTTCT others(29): Show CTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCTCTTA	intron_variant intron_variant	MODIFIER	HG02109.hp1 HG02257.hp1 HG02280.hp2 others(6): Show HG02109.hp1 HG02257.hp1 HG02280.hp2 HG02486.hp1 HG02572.hp2 HG02683.hp2 HG02970.hp1 HG02970.hp2 HG03139.hp2	a0003 a0007 a0003 a0007	a0003c0004 a0003c0015 a0007c0009 a0003c0004 a0003c0015 a0007c0009	a0003c0004t0001 a0003c0015t0001 a0007c0009t0001 a0003c0004t0001 a0003c0015t0001 a0007c0009t0001	a0003c0004t0001g0074 a0003c0004t0001g0078 a0003c0004t0001g0079 others(5): Show a0003c0004t0001g0074 a0003c0004t0001g0078 a0003c0004t0001g0079 a0003c0004t0001g0081 a0003c0004t0001g0137 a0003c0004t0001g0293 a0003c0015t0001g0077 a0007c0009t0001g0035	9	402	0.0224	36	c.996 others(51): Show c.996+403_996+404insTTCTTCTTCTTCTTCTTCTTCTTCTTCCTC TTATTC	LRRC71	ENSG00000160838.14	transcript	ENST00000337428.8	protein_coding	9/14		INFO_REALIGN_3_PRIME	chr1	TogoVar
LRRC71_chr1_156915632_156938094	156936497	A A	AAAAAAAA others(29): Show AAAAAAAAAATAAAAAAAAAAATATATATATATATAT	downstream_gene_variant downstream_gene_variant	MODIFIER	NA18522.hp2 NA18522.hp2	a0003 a0003	a0003c0004 a0003c0004	a0003c0004t0001 a0003c0004t0001	a0003c0004t0001g0136 a0003c0004t0001g0136	1	402	0.0025	36	c.35 others(47): Show c.3528_*3529insAAAAAAAAATAAAAAAAAAAATATATATATATAT AT	LRRC71	ENSG00000160838.14	transcript	ENST00000337428.8	protein_coding		3404		chr1	TogoVar
LRRC73_chr6_43501968_43515346	43502076	A A	ACACACAC others(29): Show ACACACACACACACACACACACACACACACTCTCTCT	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02647.hp1 HG02647.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0004	a0001c0001t0004g0004 a0001c0001t0004g0004	1	366	0.0027	36	c.51 others(47): Show c.5161_*5162insAGAGAGAGTGTGTGTGTGTGTGTGTGTGTGTGTG TG	LRRC73	ENSG00000204052.5	transcript	ENST00000372441.2	protein_coding		4891		chr6	TogoVar
LRRC74A_chr14_76821408_76875304	76867095	T T	TGGGGGGG others(29): Show TGGGGGGGGGTGTGTTGGGGGGTGGGGTGTGTGTGTG	intron_variant intron_variant	MODIFIER	HG02145.hp1 HG02145.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0157 a0001c0001t0001g0157	1	408	0.0025	36	c.130 others(53): Show c.1309-255_1309-254insGGGTGTGTTGGGGGGTGGGGTGTGTGTG TGGGGGGG	LRRC74A	ENSG00000100565.16	transcript	ENST00000689127.1	protein_coding	12/13		INFO_REALIGN_3_PRIME	chr14	TogoVar
LRRC74A_chr14_76821408_76875304	76867095	T T	TGGGGGGT others(29): Show TGGGGGGTGTGTGTTGGGGGGTGGGGTGTGTGTGTGG	intron_variant intron_variant	MODIFIER	HG02602.hp1 NA18985.hp1 HG02602.hp1 NA18985.hp1	a0001 a0001	a0001c0001 a0001c0007 a0001c0001 a0001c0007	a0001c0001t0001 a0001c0007t0001 a0001c0001t0001 a0001c0007t0001	a0001c0001t0001g0332 a0001c0007t0001g0171 a0001c0001t0001g0332 a0001c0007t0001g0171	2	408	0.0049	36	c.130 others(53): Show c.1309-241_1309-240insTGGGGTGTGTGTGTGGGGGGGGTGTGTG TTGGGGGG	LRRC74A	ENSG00000100565.16	transcript	ENST00000689127.1	protein_coding	12/13		INFO_REALIGN_3_PRIME	chr14	TogoVar
LRRFIP2_chr3_37047626_37179582	37100378	G G	GTATACAT others(29): Show GTATACATACATACATACATGTGTATGTATATATACA	intron_variant intron_variant	MODIFIER	HG02818.hp2 HG02818.hp2	a0001 a0001	a0001c0012 a0001c0012	a0001c0012t0002 a0001c0012t0002	a0001c0012t0002g0032 a0001c0012t0002g0032	1	268	0.0037	36	c.873 others(53): Show c.873+2510_873+2545dupTGTATATATACATACACATGTATGTATG TATGTATA	LRRFIP2	ENSG00000093167.18	transcript	ENST00000336686.9	protein_coding	15/27			chr3	TogoVar
LRRIQ1_chr12_85031351_85250105	85236830	C C	CATATATA others(29): Show CATATATATATATATCTATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG00544.hp1 HG02040.hp2 HG03927.hp1 HG00544.hp1 HG02040.hp2 HG03927.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0133 a0001c0001t0002g0136 a0001c0001t0002g0144 a0001c0001t0002g0133 a0001c0001t0002g0136 a0001c0001t0002g0144	3	228	0.0132	36	c.501 others(55): Show c.5016+4088_5016+4089insCTATATATATATATATATATATATAT ATATATATAT	LRRIQ1	ENSG00000133640.20	transcript	ENST00000393217.7	protein_coding	26/26		INFO_REALIGN_3_PRIME	chr12	TogoVar
LRRIQ1_chr12_85031351_85250105	85236830	C C	CATATATA others(29): Show CATATATATATATATCTATATATATATCTATATATAT	intron_variant intron_variant	MODIFIER	NA18972.hp1 NA19004.hp2 NA18972.hp1 NA19004.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0137 a0001c0001t0002g0145 a0001c0001t0002g0137 a0001c0001t0002g0145	2	228	0.0088	36	c.501 others(55): Show c.5016+4088_5016+4089insCTATATATATATCTATATATATATAT ATATATATAT	LRRIQ1	ENSG00000133640.20	transcript	ENST00000393217.7	protein_coding	26/26		INFO_REALIGN_3_PRIME	chr12	TogoVar
LRRK1_chr15_100914357_101083257	100962800	T T	TATATACA others(29): Show TATATACATATATATATATATATATATATATATATAC	intron_variant intron_variant	MODIFIER	HG01167.hp1 HG01169.hp2 HG01167.hp1 HG01169.hp2	a0006 a0006	a0006c0027 a0006c0027	a0006c0027t0021 a0006c0027t0021	a0006c0027t0021g0113 a0006c0027t0021g0114 a0006c0027t0021g0113 a0006c0027t0021g0114	2	338	0.0059	36	c.98- others(53): Show c.98-10999_98-10998insCATATATATATATATATATATATATATA TACATATA	LRRK1	ENSG00000154237.13	transcript	ENST00000388948.8	protein_coding	2/33		INFO_REALIGN_3_PRIME	chr15	TogoVar
LRRN1_chr3_3794431_3854834	3834525	G G	GACATATA others(29): Show GACATATATATATATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG02056.hp2 NA18986.hp1 HG02056.hp2 NA18986.hp1	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0001 a0001c0003t0039 a0001c0003t0001 a0001c0003t0039	a0001c0003t0001g0112 a0001c0003t0039g0128 a0001c0003t0001g0112 a0001c0003t0039g0128	2	422	0.0047	36	c.-27 others(55): Show c.-278-9838_-278-9837insCATATATATATATATATATATATATA TATATATATA	LRRN1	ENSG00000175928.6	transcript	ENST00000319331.4	protein_coding	1/1		INFO_REALIGN_3_PRIME	chr3	TogoVar
LRRN1_chr3_3794431_3854834	3834525	G G	GATATATA others(29): Show GATATATATATATATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	NA18974.hp2 NA18974.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0002 a0001c0002t0002	a0001c0002t0002g0033 a0001c0002t0002g0033	1	422	0.0024	36	c.-27 others(55): Show c.-278-9811_-278-9810insATATATATATATATATATATATATAT ATATATATAT	LRRN1	ENSG00000175928.6	transcript	ENST00000319331.4	protein_coding	1/1		INFO_REALIGN_3_PRIME	chr3	TogoVar
LRRTM3_chr10_66921036_67106551	66978552	A A	ATAAAAAA others(29): Show ATAAAAAAAAAAAAAAAAAAAAAAAAAATATATATAT	intron_variant intron_variant	MODIFIER	HG01361.hp2 HG01361.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0133 a0001c0001t0001g0133	1	294	0.0034	36	c.153 others(57): Show c.1536+50100_1536+50101insTAAAAAAAAAAAAAAAAAAAAAAA AAATATATATAT	LRRTM3	ENSG00000198739.11	transcript	ENST00000361320.5	protein_coding	2/2			chr10	TogoVar

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Search Results (Total: 8848 hits)