Joint Open Genome and Omics Platform (JoGo)

Search by Variant

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Chr

Chromosome name (e.g., chr11).

Snpeff genename

Exact SnpEff gene name.

Sampleids

Target sampleid (e.g. HG02615).

Snpeff haplotype class

Haplotype-annotation class (e.g., ahapid, ahapid+chapid).

Snpeff annotation impact

Exact impact level (e.g., HIGH, MODERATE, LOW).

Snpeff annotation impact detail

Keyword match in SnpEff annotation.

Hapid

One or more haplotype IDs (comma-separated; e.g., a0001, a01, a0001c0001, a01c02, a1c2, a0001c0001t0005, a0001c0001t0005g0018).

Samplehapid

Sample haplotype IDs to include (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

No_hapid

Haplotype IDs to exclude (comma-separated; e.g., a0001, a0002, a0001c0001, a0001c0001t0005, a1, a01).

No_samplehapid

Sample haplotype IDs to exclude (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

Start

Start position (GRCh38).

End

End position (GRCh38).

Minac

Minimum alternate allele count (≥).

Maxac

Maximum alternate allele count (≤).

Minlen

Minimum variant length (≥).

Maxlen

Maximum variant length (≤).

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regionname	pos	ref	alt	annotation	impact	samples	ahapids	achapids	acthapids	actghapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	external
LRRTM3_chr10_66921036_67106551	66978552	A A	ATAAAAAA others(29): Show ATAAAAAAAATAAAAAAAAAAAAAAAAATATATATAT	intron_variant intron_variant	MODIFIER	HG03704.hp1 HG03704.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0143 a0001c0001t0002g0143	1	294	0.0034	36	c.153 others(57): Show c.1536+50100_1536+50101insTAAAAAAAATAAAAAAAAAAAAAA AAATATATATAT	LRRTM3	ENSG00000198739.11	transcript	ENST00000361320.5	protein_coding	2/2			chr10	TogoVar
LRRTM3_chr10_66921036_67106551	66978552	A A	ATAAAAAA others(29): Show ATAAAAAAAATAAAAAAAAAAAAAAATATATATATAT	intron_variant intron_variant	MODIFIER	HG01358.hp2 HG01517.hp2 HG01884.hp2 others(4): Show HG01358.hp2 HG01517.hp2 HG01884.hp2 HG03017.hp1 HG03710.hp2 NA19055.hp1 NA20752.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0017 others(1): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0017 a0001c0001t0019	a0001c0001t0001g0027 a0001c0001t0001g0138 a0001c0001t0001g0141 others(4): Show a0001c0001t0001g0027 a0001c0001t0001g0138 a0001c0001t0001g0141 a0001c0001t0002g0011 a0001c0001t0002g0076 a0001c0001t0017g0002 a0001c0001t0019g0134	7	294	0.0238	36	c.153 others(57): Show c.1536+50100_1536+50101insTAAAAAAAATAAAAAAAAAAAAAA ATATATATATAT	LRRTM3	ENSG00000198739.11	transcript	ENST00000361320.5	protein_coding	2/2			chr10	TogoVar
LRRTM3_chr10_66921036_67106551	66978552	A A	ATAAAAAA others(29): Show ATAAAAAAAATAAAAAAAAAAAAATATATATATATAT	intron_variant intron_variant	MODIFIER	HG00280.hp1 HG01071.hp1 HG01106.hp1 others(5): Show HG00280.hp1 HG01071.hp1 HG01106.hp1 HG01346.hp2 HG02523.hp2 HG04228.hp2 NA19065.hp2 NA20752.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0001 a0001c0001t0002	a0001c0001t0001g0028 a0001c0001t0001g0066 a0001c0001t0002g0006 others(5): Show a0001c0001t0001g0028 a0001c0001t0001g0066 a0001c0001t0002g0006 a0001c0001t0002g0126 a0001c0001t0002g0130 a0001c0001t0002g0139 a0001c0001t0002g0140 a0001c0001t0002g0144	8	294	0.0272	36	c.153 others(57): Show c.1536+50100_1536+50101insTAAAAAAAATAAAAAAAAAAAAAT ATATATATATAT	LRRTM3	ENSG00000198739.11	transcript	ENST00000361320.5	protein_coding	2/2			chr10	TogoVar
LRRTM3_chr10_66921036_67106551	66978552	A A	ATAAAAAA others(29): Show ATAAAAAAAATAAAAAAAAAAATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG02071.hp2 HG04184.hp1 HG02071.hp2 HG04184.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0004 a0001c0001t0001g0128 a0001c0001t0001g0004 a0001c0001t0001g0128	2	294	0.0068	36	c.153 others(57): Show c.1536+50100_1536+50101insTAAAAAAAATAAAAAAAAAAATAT ATATATATATAT	LRRTM3	ENSG00000198739.11	transcript	ENST00000361320.5	protein_coding	2/2			chr10	TogoVar
LRRTM3_chr10_66921036_67106551	67025153	A A	AAAGGAAG others(29): Show AAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGG	intron_variant intron_variant	MODIFIER	HG01106.hp2 HG03579.hp2 HG01106.hp2 HG03579.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0248 a0001c0001t0003g0252 a0001c0001t0003g0248 a0001c0001t0003g0252	2	294	0.0068	36	c.153 others(57): Show c.1537-72412_1537-72411insGGAAGGAAGGAAGGAAGGAAGGAA GGAAGGAAGGAA	LRRTM3	ENSG00000198739.11	transcript	ENST00000361320.5	protein_coding	2/2		INFO_REALIGN_3_PRIME	chr10	TogoVar
LRRTM4_chr2_76742685_77527376	76979541	G G	GTATATAT others(29): Show GTATATATATATATATATATATATATATATATATATA	intron_variant intron_variant	MODIFIER	HG01891.hp1 HG02735.hp2 HG03579.hp1 others(3): Show HG01891.hp1 HG02735.hp2 HG03579.hp1 HG06807.hp1 NA19065.hp2 NA19066.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(2): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 a0001c0001t0005	a0001c0001t0001g0048 a0001c0001t0001g0106 a0001c0001t0002g0123 others(3): Show a0001c0001t0001g0048 a0001c0001t0001g0106 a0001c0001t0002g0123 a0001c0001t0003g0112 a0001c0001t0004g0052 a0001c0001t0005g0091	6	128	0.0469	36	c.155 others(59): Show c.1552-230626_1552-230625insTATATATATATATATATATATA TATATATATATATA	LRRTM4	ENSG00000176204.14	transcript	ENST00000409884.6	protein_coding	3/3			chr2	TogoVar
LRRTM4_chr2_76742685_77527376	77362146	A A	AAAGAAAG others(29): Show AAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGG	intron_variant intron_variant	MODIFIER	HG02280.hp1 HG02280.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0119 a0001c0001t0002g0119	1	128	0.0078	36	c.155 others(59): Show c.1551+156171_1551+156172insCCTTTCTTTCTTTCTTTCTTTC TTTCTTTCTTTCTT	LRRTM4	ENSG00000176204.14	transcript	ENST00000409884.6	protein_coding	3/3			chr2	TogoVar
LRRTM4_chr2_76742685_77527376	77362170	A A	AAAGAAAG others(29): Show AAAGAAAGAAAGAAAGAAAGAAAGAAAGGAAGGAAGG	intron_variant intron_variant	MODIFIER	HG02965.hp2 HG02965.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0062 a0001c0001t0001g0062	1	128	0.0078	36	c.155 others(59): Show c.1551+156147_1551+156148insCCTTCCTTCCTTTCTTTCTTTC TTTCTTTCTTTCTT	LRRTM4	ENSG00000176204.14	transcript	ENST00000409884.6	protein_coding	3/3			chr2	TogoVar
LRRTM4_chr2_76742685_77527376	77362170	A A	AAAGAAAG others(29): Show AAAGAAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGG	intron_variant intron_variant	MODIFIER	NA18522.hp2 NA18522.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0051 a0001c0001t0002g0051	1	128	0.0078	36	c.155 others(59): Show c.1551+156147_1551+156148insCCTTCCTTCCTTCCTTCCTTCC TTCCTTCCTTTCTT	LRRTM4	ENSG00000176204.14	transcript	ENST00000409884.6	protein_coding	3/3			chr2	TogoVar
LSAMP_chr3_115797374_116450487	115808083	C C	CTCCTTCC others(29): Show CTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCT	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG02922.hp2 HG02922.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0067 a0001c0001t0067	a0001c0001t0067g0064 a0001c0001t0067g0064	1	104	0.0096	36	c.22 others(47): Show c.2233_*2234insAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAG GA	LSAMP	ENSG00000185565.13	transcript	ENST00000490035.7	protein_coding	7/7	2233		chr3	TogoVar
LSAMP_chr3_115797374_116450487	115869269	G G	GGAGAGAG others(29): Show GGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA	intron_variant intron_variant	MODIFIER	HG01175.hp2 HG01175.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0053 a0001c0002t0053	a0001c0002t0053g0029 a0001c0002t0053g0029	1	104	0.0096	36	c.515 others(55): Show c.515-16653_515-16652insTCTCTCTCTCTCTCTCTCTCTCTCTC TCTCTCTCTC	LSAMP	ENSG00000185565.13	transcript	ENST00000490035.7	protein_coding	3/6			chr3	TogoVar
LSAMP_chr3_115797374_116450487	116273683	C C	CAGATATA others(29): Show CAGATATATATATATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG03041.hp2 HG03041.hp2	a0002 a0002	a0002c0003 a0002c0003	a0002c0003t0007 a0002c0003t0007	a0002c0003t0007g0004 a0002c0003t0007g0004	1	104	0.0096	36	c.155 others(57): Show c.155+171193_155+171194insATATATATATATATATATATATAT ATATATATATCT	LSAMP	ENSG00000185565.13	transcript	ENST00000490035.7	protein_coding	1/6			chr3	TogoVar
LSAMP_chr3_115797374_116450487	116273707	T T	TATATATA others(29): Show TATATATATATATATATATATATATATATATATACAC	intron_variant intron_variant	MODIFIER	NA19011.hp2 NA19011.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0060 a0001c0001t0060	a0001c0001t0060g0057 a0001c0001t0060g0057	1	104	0.0096	36	c.155 others(57): Show c.155+171169_155+171170insGTGTATATATATATATATATATAT ATATATATATAT	LSAMP	ENSG00000185565.13	transcript	ENST00000490035.7	protein_coding	1/6			chr3	TogoVar
LSM14A_chr19_34167504_34234288	34192316	G G	GTTTTTTT others(29): Show GTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG01081.hp1 HG01081.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0126 a0001c0001t0002g0126	1	315	0.0032	36	c.122 others(53): Show c.122-2160_122-2159insTTTTTTTTTTTTTTTTTTTTTTTTTTTT TTTTTTTT	LSM14A	ENSG00000257103.9	transcript	ENST00000544216.8	protein_coding	1/9		INFO_REALIGN_3_PRIME	chr19	TogoVar
LSS_chr21_46183446_46233774	46228815	C C	CCCCGCCC others(29): Show CCCCGCCCCTCCCGCCCCTCCCGCCCCTCCCGCCCCT	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00323.hp2 HG01175.hp2 HG01884.hp2 others(3): Show HG00323.hp2 HG01175.hp2 HG01884.hp2 NA18949.hp2 NA19010.hp2 NA19030.hp1	a0001 a0001	a0001c0001 a0001c0004 a0001c0005 others(1): Show a0001c0001 a0001c0004 a0001c0005 a0001c0006	a0001c0001t0001 a0001c0004t0003 a0001c0005t0001 others(1): Show a0001c0001t0001 a0001c0004t0003 a0001c0005t0001 a0001c0006t0005	a0001c0001t0001g0155 a0001c0001t0001g0174 a0001c0001t0001g0190 others(3): Show a0001c0001t0001g0155 a0001c0001t0001g0174 a0001c0001t0001g0190 a0001c0004t0003g0128 a0001c0005t0001g0005 a0001c0006t0005g0056	6	358	0.0168	36	c.-71 others(43): Show c.-71_-70insAGGGGCGGGAGGGGCGGGAGGGGCGGGAGGGGCGGG	LSS	ENSG00000160285.15	transcript	ENST00000397728.8	protein_coding		42		chr21	TogoVar
LTB4R_chr14_24306502_24323036	24321386	A A	ATGCACTC others(29): Show ATGCACTCCAGCCTGAGCGACGAGAGTGAAACTCTGT	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00673.hp1 HG00673.hp1	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0004 a0001c0003t0004	a0001c0003t0004g0002 a0001c0003t0004g0002	1	428	0.0023	36	c.46 others(47): Show c.4676_*4677insTGCACTCCAGCCTGAGCGACGAGAGTGAAACTCT GT	LTB4R	ENSG00000213903.9	transcript	ENST00000345363.8	protein_coding		3351		chr14	TogoVar
LTBP1_chr2_32941953_33404509	33087084	C C	CTTTTTTT others(29): Show CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	NA18964.hp1 NA18964.hp1	a0003 a0003	a0003c0028 a0003c0028	a0003c0028t0038 a0003c0028t0038	a0003c0028t0038g0036 a0003c0028t0038g0036	1	164	0.0061	36	c.864 others(55): Show c.864-23474_864-23473insTTTTTTTTTTTTTTTTTTTTTTTTTT TTTTTTTTTT	LTBP1	ENSG00000049323.16	transcript	ENST00000404816.7	protein_coding	3/33		INFO_REALIGN_3_PRIME	chr2	TogoVar
LTBP2_chr14_74493183_74617237	74564139	A A	ATATATAT others(29): Show ATATATATATTTATATATATATTTATATATATATATT	intron_variant intron_variant	MODIFIER	HG02486.hp1 HG02486.hp1	a0001 a0001	a0001c0042 a0001c0042	a0001c0042t0003 a0001c0042t0003	a0001c0042t0003g0124 a0001c0042t0003g0124	1	282	0.0036	36	c.831 others(53): Show c.831-8447_831-8446insAATATATATATATAAATATATATATAAA TATATATA	LTBP2	ENSG00000119681.12	transcript	ENST00000261978.9	protein_coding	3/35			chr14	TogoVar
LTBP2_chr14_74493183_74617237	74564199	T T	TTATATAT others(29): Show TTATATATATATTTATATATATATTTATATATATTTA	intron_variant intron_variant	MODIFIER	NA19004.hp1 NA19004.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0159 a0001c0002t0001g0159	1	282	0.0036	36	c.831 others(53): Show c.831-8507_831-8506insTAAATATATATAAATATATATATAAATA TATATATA	LTBP2	ENSG00000119681.12	transcript	ENST00000261978.9	protein_coding	3/35			chr14	TogoVar
LTBP3_chr11_65533559_65563359	65540703	C C	CGGGCGGG others(29): Show CGGGCGGGGCCTACAGGAGGGGCGGGGCCTACAGGAG	intron_variant intron_variant	MODIFIER	HG00609.hp1 HG01243.hp1 HG01978.hp1 others(4): Show HG00609.hp1 HG01243.hp1 HG01978.hp1 HG03225.hp2 NA18948.hp1 NA18970.hp2 NA19056.hp1	a0001 a0002 a0004 others(2): Show a0001 a0002 a0004 a0005 a0012	a0001c0001 a0002c0002 a0004c0005 others(2): Show a0001c0001 a0002c0002 a0004c0005 a0005c0006 a0012c0015	a0001c0001t0002 a0002c0002t0001 a0004c0005t0001 others(2): Show a0001c0001t0002 a0002c0002t0001 a0004c0005t0001 a0005c0006t0002 a0012c0015t0001	a0001c0001t0002g0135 a0002c0002t0001g0055 a0004c0005t0001g0042 others(3): Show a0001c0001t0002g0135 a0002c0002t0001g0055 a0004c0005t0001g0042 a0004c0005t0001g0213 a0005c0006t0002g0222 a0012c0015t0001g0062	7	316	0.0222	36	c.297 others(51): Show c.2978-90_2978-89insCTCCTGTAGGCCCCGCCCCTCCTGTAGGCC CCGCCC	LTBP3	ENSG00000168056.18	transcript	ENST00000301873.11	protein_coding	21/27			chr11	TogoVar
LTN1_chr21_28923144_28997877	28927501	A A	ATATATAT others(29): Show ATATATATATATATATATATATTTTTTTTTTTTTTTT	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02135.hp1 HG02135.hp1	a0001 a0001	a0001c0004 a0001c0004	a0001c0004t0001 a0001c0004t0001	a0001c0004t0001g0277 a0001c0004t0001g0277	1	404	0.0025	36	c.29 others(47): Show c.2946_*2947insAAAAAAAAAAAAAAAATATATATATATATATATA TA	LTN1	ENSG00000198862.14	transcript	ENST00000361371.10	protein_coding		642		chr21	TogoVar
LUC7L_chr16_183990_234449	184639	C C	CCTGTCTC others(29): Show CCTGTCTCCACAAAAACATAAAAAATTAGCCAAGTGT	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01167.hp2 HG01167.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0185 a0001c0001t0001g0185	1	350	0.0029	36	c.45 others(47): Show c.4558_*4559insACACTTGGCTAATTTTTTATGTTTTTGTGGAGAC AG	LUC7L	ENSG00000007392.17	transcript	ENST00000293872.13	protein_coding		4350		chr16	TogoVar
LUC7L_chr16_183990_234449	186476	G G	GGGAACAG others(29): Show GGGAACAGCGACACGGAGGGAACAGCGACACGGGGGA	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01192.hp2 HG01192.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0201 a0001c0001t0001g0201	1	350	0.0029	36	c.27 others(47): Show c.2721_*2722insTCCCCCGTGTCGCTGTTCCCTCCGTGTCGCTGTT CC	LUC7L	ENSG00000007392.17	transcript	ENST00000293872.13	protein_coding		2513		chr16	TogoVar
LUC7L_chr16_183990_234449	186476	G G	GGGAACAG others(29): Show GGGAACAGCGACACGGGGGGAACAGCGACACGGGGGA	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00140.hp2 HG00140.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0245 a0001c0001t0001g0245	1	350	0.0029	36	c.27 others(47): Show c.2721_*2722insTCCCCCGTGTCGCTGTTCCCCCCGTGTCGCTGTT CC	LUC7L	ENSG00000007392.17	transcript	ENST00000293872.13	protein_coding		2513		chr16	TogoVar
LUC7L_chr16_183990_234449	186492	G G	GGGGAACA others(29): Show GGGGAACAGCGACACGGGGGAGGAACAGCGACACGGA	downstream_gene_variant downstream_gene_variant	MODIFIER	HG03239.hp1 HG03239.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0261 a0001c0001t0001g0261	1	350	0.0029	36	c.27 others(47): Show c.2705_*2706insTCCGTGTCGCTGTTCCTCCCCCGTGTCGCTGTTC CC	LUC7L	ENSG00000007392.17	transcript	ENST00000293872.13	protein_coding		2497		chr16	TogoVar
LUC7L_chr16_183990_234449	186493	G G	GGGAACAG others(29): Show GGGAACAGCGACACGGAGGGAACAGCGACACGGGGGA	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01192.hp1 HG01192.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0015 a0001c0001t0001g0015	1	350	0.0029	36	c.27 others(47): Show c.2704_*2705insTCCCCCGTGTCGCTGTTCCCTCCGTGTCGCTGTT CC	LUC7L	ENSG00000007392.17	transcript	ENST00000293872.13	protein_coding		2496		chr16	TogoVar
LUC7L_chr16_183990_234449	186561	G G	GGGAACAG others(29): Show GGGAACAGCGACACGGGGGGAACAGCGACACGGGGGA	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02055.hp2 HG02055.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0251 a0001c0001t0001g0251	1	350	0.0029	36	c.26 others(47): Show c.2636_*2637insTCCCCCGTGTCGCTGTTCCCCCCGTGTCGCTGTT CC	LUC7L	ENSG00000007392.17	transcript	ENST00000293872.13	protein_coding		2428		chr16	TogoVar
LUC7L_chr16_183990_234449	186951	G G	GGGGAACA others(29): Show GGGGAACAGCGACACGGGGGAGGAACAGCGACACGGA	downstream_gene_variant downstream_gene_variant	MODIFIER	HG03491.hp2 HG03491.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0212 a0001c0001t0001g0212	1	350	0.0029	36	c.22 others(47): Show c.2246_*2247insTCCGTGTCGCTGTTCCTCCCCCGTGTCGCTGTTC CC	LUC7L	ENSG00000007392.17	transcript	ENST00000293872.13	protein_coding		2038		chr16	TogoVar
LUC7L_chr16_183990_234449	187019	G G	GGGGAACA others(29): Show GGGGAACAGCGACACGGGGGAGGAACAGCGACACGGA	downstream_gene_variant downstream_gene_variant	MODIFIER	HG03491.hp2 HG03491.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0212 a0001c0001t0001g0212	1	350	0.0029	36	c.21 others(47): Show c.2178_*2179insTCCGTGTCGCTGTTCCTCCCCCGTGTCGCTGTTC CC	LUC7L	ENSG00000007392.17	transcript	ENST00000293872.13	protein_coding		1970		chr16	TogoVar
LUC7L_chr16_183990_234449	187036	G G	GGGGAACA others(29): Show GGGGAACAGCGACACGGGGGAGGAACAGCGACACGGA	downstream_gene_variant downstream_gene_variant	MODIFIER	NA19077.hp1 NA19077.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0177 a0001c0001t0001g0177	1	350	0.0029	36	c.21 others(47): Show c.2161_*2162insTCCGTGTCGCTGTTCCTCCCCCGTGTCGCTGTTC CC	LUC7L	ENSG00000007392.17	transcript	ENST00000293872.13	protein_coding		1953		chr16	TogoVar
LURAP1L_chr9_12770020_12828060	12807094	A A	AATATATA others(29): Show AATATATATATATATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG00621.hp2 HG00621.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0379 a0001c0001t0001g0379	1	418	0.0024	36	c.313 others(55): Show c.313-14268_313-14267insATATATATATATATATATATATATAT ATATATATAT	LURAP1L	ENSG00000153714.6	transcript	ENST00000319264.4	protein_coding	1/1		INFO_REALIGN_3_PRIME	chr9	TogoVar
LUZP2_chr11_24492053_25087638	24919426	A A	ATATATGT others(29): Show ATATATGTTATATATTATATATGATATATATTGATAT	intron_variant intron_variant	MODIFIER	HG04204.hp2 HG04204.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0001 a0002c0002t0001	a0002c0002t0001g0008 a0002c0002t0001g0008	1	116	0.0086	36	c.522 others(53): Show c.522+4911_522+4912insTATATATTGATATTATATGTTATATATT ATATATGA	LUZP2	ENSG00000187398.12	transcript	ENST00000336930.11	protein_coding	7/11		INFO_REALIGN_3_PRIME	chr11	TogoVar
LUZP2_chr11_24492053_25087638	24919450	C C	CATATATT others(29): Show CATATATTGATAATATATGTTATATATTATATATAAT	intron_variant intron_variant	MODIFIER	HG04228.hp1 HG04228.hp1	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0022 a0002c0002t0022	a0002c0002t0022g0017 a0002c0002t0022g0017	1	116	0.0086	36	c.522 others(53): Show c.522+4920_522+4955dupGATAATATATGTTATATATTATATATAA TATATATT	LUZP2	ENSG00000187398.12	transcript	ENST00000336930.11	protein_coding	7/11		INFO_REALIGN_3_PRIME	chr11	TogoVar
LY75_chr2_159798355_159909756	159848093	T T	TATATACA others(29): Show TATATACACACACACACACACACACACACACACACAC	intron_variant intron_variant	MODIFIER	NA18983.hp1 NA18983.hp1	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0003 a0001c0003t0003	a0001c0003t0003g0260 a0001c0003t0003g0260	1	330	0.0030	36	c.315 others(55): Show c.3150+1886_3150+1887insGTGTGTGTGTGTGTGTGTGTGTGTGT GTGTGTATAT	LY75	ENSG00000054219.11	transcript	ENST00000263636.5	protein_coding	23/34			chr2	TogoVar
LY75_chr2_159798355_159909756	159848093	T T	TATATATA others(29): Show TATATATATATATATACACACACACACACACACACAC	intron_variant intron_variant	MODIFIER	NA20129.hp2 NA20129.hp2	a0013 a0013	a0013c0018 a0013c0018	a0013c0018t0001 a0013c0018t0001	a0013c0018t0001g0218 a0013c0018t0001g0218	1	330	0.0030	36	c.315 others(55): Show c.3150+1886_3150+1887insGTGTGTGTGTGTGTGTGTGTGTATAT ATATATATAT	LY75	ENSG00000054219.11	transcript	ENST00000263636.5	protein_coding	23/34			chr2	TogoVar
LY75_chr2_159798355_159909756	159850789	T T	TATATATA others(29): Show TATATATATATATATATATATATATATATATATAAAA	intron_variant intron_variant	MODIFIER	HG00140.hp1 HG00140.hp1	a0014 a0014	a0014c0022 a0014c0022	a0014c0022t0001 a0014c0022t0001	a0014c0022t0001g0105 a0014c0022t0001g0105	1	330	0.0030	36	c.288 others(53): Show c.2884-323_2884-322insTTTTATATATATATATATATATATATAT ATATATAT	LY75	ENSG00000054219.11	transcript	ENST00000263636.5	protein_coding	21/34			chr2	TogoVar
LY75_chr2_159798355_159909756	159850791	T T	TATATATA others(29): Show TATATATATATATATATATATATATATATATAAATAA	intron_variant intron_variant	MODIFIER	HG02486.hp1 HG02809.hp2 HG02486.hp1 HG02809.hp2	a0009 a0009	a0009c0012 a0009c0012	a0009c0012t0001 a0009c0012t0001	a0009c0012t0001g0219 a0009c0012t0001g0230 a0009c0012t0001g0219 a0009c0012t0001g0230	2	330	0.0061	36	c.288 others(53): Show c.2884-325_2884-324insTTATTTATATATATATATATATATATAT ATATATAT	LY75	ENSG00000054219.11	transcript	ENST00000263636.5	protein_coding	21/34			chr2	TogoVar
LY75_chr2_159798355_159909756	159850791	T T	TATATATA others(29): Show TATATATATATATATATATATATATATATATATAAAA	intron_variant intron_variant	MODIFIER	HG01109.hp1 HG01109.hp1	a0007 a0007	a0007c0007 a0007c0007	a0007c0007t0002 a0007c0007t0002	a0007c0007t0002g0112 a0007c0007t0002g0112	1	330	0.0030	36	c.288 others(53): Show c.2884-325_2884-324insTTTTATATATATATATATATATATATAT ATATATAT	LY75	ENSG00000054219.11	transcript	ENST00000263636.5	protein_coding	21/34			chr2	TogoVar
LY75_chr2_159798355_159909756	159874238	T T	TATATATT others(29): Show TATATATTGTAAATATATATATTGTAAATATATATAA	intron_variant intron_variant	MODIFIER	NA18970.hp2 NA18970.hp2	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0001 a0001c0003t0001	a0001c0003t0001g0256 a0001c0003t0001g0256	1	330	0.0030	36	c.197 others(55): Show c.1974+1170_1974+1205dupTTATATATATTTACAATATATATATT TACAATATAT	LY75	ENSG00000054219.11	transcript	ENST00000263636.5	protein_coding	12/34			chr2	TogoVar
LY86_chr6_6583720_6659982	6585671	T T	TAATATAT others(29): Show TAATATATATATATATATATATATATATATATATATA	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01891.hp2 HG01891.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0014 a0001c0001t0001g0014	1	424	0.0024	36	c.-30 others(47): Show c.-3064_-3063insAATATATATATATATATATATATATATATATATA TA	LY86	ENSG00000112799.9	transcript	ENST00000230568.5	protein_coding		3048		chr6	TogoVar
LY86_chr6_6583720_6659982	6585671	T T	TTATATAT others(29): Show TTATATATATATATATATATATATATATATATATATA	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00609.hp1 HG00733.hp1 HG01243.hp2 others(16): Show HG00609.hp1 HG00733.hp1 HG01243.hp2 HG01496.hp1 HG01516.hp1 HG01943.hp1 HG02615.hp1 HG02622.hp1 HG02630.hp2 HG02970.hp1 HG03139.hp2 HG03209.hp2 HG03453.hp2 HG03669.hp1 HG03831.hp1 NA18522.hp2 NA18612.hp1 NA18950.hp1 NA19090.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0002c0002 a0001c0001 a0002c0002	a0001c0001t0001 a0002c0002t0001 a0001c0001t0001 a0002c0002t0001	a0001c0001t0001g0011 a0001c0001t0001g0117 a0001c0001t0001g0119 others(16): Show a0001c0001t0001g0011 a0001c0001t0001g0117 a0001c0001t0001g0119 a0001c0001t0001g0130 a0001c0001t0001g0161 a0001c0001t0001g0162 a0001c0001t0001g0167 a0001c0001t0001g0169 a0001c0001t0001g0170 a0001c0001t0001g0192 a0001c0001t0001g0201 a0001c0001t0001g0209 a0001c0001t0001g0212 a0001c0001t0001g0232 a0001c0001t0001g0233 a0001c0001t0001g0245 a0001c0001t0001g0250 a0001c0001t0001g0253 a0002c0002t0001g0210	19	424	0.0448	36	c.-30 others(47): Show c.-3064_-3063insTATATATATATATATATATATATATATATATATA TA	LY86	ENSG00000112799.9	transcript	ENST00000230568.5	protein_coding		3048		chr6	TogoVar
LY96_chr8_73986392_74034079	73996372	C C	CATTCCTT others(29): Show CATTCCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTT	intron_variant intron_variant	MODIFIER	NA19002.hp1 NA19002.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0158 a0001c0001t0001g0158	1	314	0.0032	36	c.112 others(53): Show c.112+4818_112+4819insATTCCTTTCTTTCTTTCTTTCTTTCTTT CTTTCTTT	LY96	ENSG00000154589.7	transcript	ENST00000284818.7	protein_coding	1/4			chr8	TogoVar
LYN_chr8_55874835_56019169	55887575	T T	TATATATA others(29): Show TATATATACACACACACACACACACACACACACACAC	intron_variant intron_variant	MODIFIER	HG03130.hp1 HG03195.hp1 NA18950.hp1 others(4): Show HG03130.hp1 HG03195.hp1 NA18950.hp1 NA18966.hp2 NA18998.hp2 NA19057.hp2 NA19070.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0001 a0001c0001t0002 a0001c0001t0011 others(1): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0011 a0001c0002t0001	a0001c0001t0001g0106 a0001c0001t0001g0107 a0001c0001t0001g0108 others(4): Show a0001c0001t0001g0106 a0001c0001t0001g0107 a0001c0001t0001g0108 a0001c0001t0002g0282 a0001c0001t0002g0283 a0001c0001t0011g0135 a0001c0002t0001g0073	7	288	0.0243	36	c.-6+ others(51): Show c.-6+7473_-6+7474insTATATACACACACACACACACACACACACA CACACA	LYN	ENSG00000254087.8	transcript	ENST00000519728.6	protein_coding	1/12		INFO_REALIGN_3_PRIME	chr8	TogoVar
LYPD6B_chr2_149033699_149220262	149120383	A A	ATATATAT others(29): Show ATATATATATATATATATATTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG03491.hp2 HG03491.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0049 a0001c0001t0001g0049	1	264	0.0038	36	c.-66 others(55): Show c.-66-10499_-66-10498insATATATATATATATATATTTTTTTTT TTTTTTTTTT	LYPD6B	ENSG00000150556.17	transcript	ENST00000409642.8	protein_coding	1/6		INFO_REALIGN_3_PRIME	chr2	TogoVar
LYPD6B_chr2_149033699_149220262	149189367	T T	TATATATA others(29): Show TATATATATATATATATATATATATATATATATATAC	intron_variant intron_variant	MODIFIER	NA18994.hp2 NA18994.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0191 a0001c0001t0001g0191	1	264	0.0038	36	c.78- others(53): Show c.78-15885_78-15884insTATATATATATATATATATATATATATA TATATACA	LYPD6B	ENSG00000150556.17	transcript	ENST00000409642.8	protein_coding	3/6		INFO_REALIGN_3_PRIME	chr2	TogoVar
LYPD8_chr1_248734415_248760759	248742189	T T	TGCTCTGG others(29): Show TGCTCTGGTGGGGATGTTGGCAGCCGGGGGAGGTTAC	intron_variant intron_variant	MODIFIER	HG03540.hp1 HG03540.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0182 a0001c0001t0001g0182	1	374	0.0027	36	c.476 others(53): Show c.476-2341_476-2340insGTAACCTCCCCCGGCTGCCAACATCCCC ACCAGAGC	LYPD8	ENSG00000259823.6	transcript	ENST00000590317.4	protein_coding	6/6			chr1	TogoVar
LYPD8_chr1_248734415_248760759	248742211	G G	GCGGGGGA others(29): Show GCGGGGGAGATTACGCTCTGGTGGGGATGTTGGCAGC	intron_variant intron_variant	MODIFIER	HG03239.hp1 HG03239.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0171 a0001c0001t0001g0171	1	374	0.0027	36	c.476 others(53): Show c.476-2398_476-2363dupGCTGCCAACATCCCCACCAGAGCGTAAT CTCCCCCG	LYPD8	ENSG00000259823.6	transcript	ENST00000590317.4	protein_coding	6/6			chr1	TogoVar
LYPLA1_chr8_54041367_54106947	54084133	A A	AAAAAAAA others(29): Show AAAAAAAAAAAAAAAAAAAAAAAAAATATATATATAT	intron_variant intron_variant	MODIFIER	HG02258.hp2 HG02258.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0014 a0001c0001t0002g0014	1	306	0.0033	36	c.101 others(55): Show c.101+16774_101+16775insATATATATATATTTTTTTTTTTTTTT TTTTTTTTTT	LYPLA1	ENSG00000120992.18	transcript	ENST00000316963.8	protein_coding	2/8			chr8	TogoVar
LYPLA1_chr8_54041367_54106947	54084133	A A	AAAAAAAA others(29): Show AAAAAAAAAAAAAAAAAAAAAAAATATATATATATAT	intron_variant intron_variant	MODIFIER	HG02976.hp2 HG02976.hp2	a0003 a0003	a0003c0003 a0003c0003	a0003c0003t0002 a0003c0003t0002	a0003c0003t0002g0144 a0003c0003t0002g0144	1	306	0.0033	36	c.101 others(55): Show c.101+16774_101+16775insATATATATATATATTTTTTTTTTTTT TTTTTTTTTT	LYPLA1	ENSG00000120992.18	transcript	ENST00000316963.8	protein_coding	2/8			chr8	TogoVar
LYRM1_chr16_20895771_20930006	20927049	C C	CATATATA others(29): Show CATATATATATATATATATATATATATATATATATAT	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00323.hp2 HG00609.hp2 HG00733.hp1 others(8): Show HG00323.hp2 HG00609.hp2 HG00733.hp1 HG01255.hp1 HG03654.hp2 HG03669.hp1 NA18947.hp2 NA18953.hp1 NA18994.hp2 NA19075.hp1 NA19087.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0004 a0001c0001t0001g0012 a0001c0001t0001g0017 others(7): Show a0001c0001t0001g0004 a0001c0001t0001g0012 a0001c0001t0001g0017 a0001c0001t0001g0031 a0001c0001t0001g0035 a0001c0001t0001g0085 a0001c0001t0001g0099 a0001c0001t0001g0109 a0001c0001t0001g0138 a0001c0001t0001g0217	11	382	0.0288	36	c.29 others(47): Show c.2933_*2934insATATATATATATATATATATATATATATATATAT AT	LYRM1	ENSG00000102897.10	transcript	ENST00000567954.6	protein_coding		2044		chr16	TogoVar

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