Joint Open Genome and Omics Platform (JoGo)

Search by Variant

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Chr

Chromosome name (e.g., chr11).

Snpeff genename

Exact SnpEff gene name.

Sampleids

Target sampleid (e.g. HG02615).

Snpeff haplotype class

Haplotype-annotation class (e.g., ahapid, ahapid+chapid).

Snpeff annotation impact

Exact impact level (e.g., HIGH, MODERATE, LOW).

Snpeff annotation impact detail

Keyword match in SnpEff annotation.

Hapid

One or more haplotype IDs (comma-separated; e.g., a0001, a01, a0001c0001, a01c02, a1c2, a0001c0001t0005, a0001c0001t0005g0018).

Samplehapid

Sample haplotype IDs to include (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

No_hapid

Haplotype IDs to exclude (comma-separated; e.g., a0001, a0002, a0001c0001, a0001c0001t0005, a1, a01).

No_samplehapid

Sample haplotype IDs to exclude (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

Start

Start position (GRCh38).

End

End position (GRCh38).

Minac

Minimum alternate allele count (≥).

Maxac

Maximum alternate allele count (≤).

Minlen

Minimum variant length (≥).

Maxlen

Maximum variant length (≤).

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regionname	pos	ref	alt	annotation	impact	samples	ahapids	achapids	acthapids	actghapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	external
TIMM9_chr14_58403495_58432531	58404099	G G	GTGTGTGT others(31): Show GTGTGTGTGTATATATATATATATATATATATATATATA	downstream_gene_variant downstream_gene_variant	MODIFIER	NA19011.hp2 NA19011.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0220 a0001c0001t0001g0220	1	378	0.0027	38	c.49 others(49): Show c.4934_*4935insTATATATATATATATATATATATATATATACACA CACA	TIMM9	ENSG00000100575.14	transcript	ENST00000395159.7	protein_coding		4395		chr14	TogoVar
TIMP2_chr17_78847977_78930387	78904091	A A	ATATATAT others(31): Show ATATATATGTGTATGTGTGTGTGTGTGTGTGTGTGTGTG	intron_variant intron_variant	MODIFIER	HG00140.hp2 HG01358.hp1 HG01993.hp2 others(4): Show HG00140.hp2 HG01358.hp1 HG01993.hp2 HG02698.hp1 HG03239.hp2 HG06807.hp1 NA20905.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0003 a0001c0001t0001 a0001c0001t0003	a0001c0001t0001g0248 a0001c0001t0003g0249 a0001c0001t0003g0298 others(4): Show a0001c0001t0001g0248 a0001c0001t0003g0249 a0001c0001t0003g0298 a0001c0001t0003g0299 a0001c0001t0003g0303 a0001c0001t0003g0304 a0001c0001t0003g0312	7	316	0.0222	38	c.130 others(57): Show c.130+20867_130+20868insCACACACACACACACACACACACACA TACACATATATA	TIMP2	ENSG00000035862.13	transcript	ENST00000262768.11	protein_coding	1/4			chr17	TogoVar
TIMP2_chr17_78847977_78930387	78904091	A A	ATGTGTGT others(31): Show ATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG	intron_variant intron_variant	MODIFIER	HG01884.hp1 HG02809.hp2 HG02818.hp2 others(6): Show HG01884.hp1 HG02809.hp2 HG02818.hp2 HG02976.hp1 HG03209.hp2 HG04204.hp1 NA18522.hp1 NA19005.hp1 NA21309.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0001 a0001c0001t0002 a0001c0001t0006 others(2): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0006 a0001c0001t0050 a0001c0002t0009	a0001c0001t0001g0164 a0001c0001t0001g0199 a0001c0001t0001g0305 others(6): Show a0001c0001t0001g0164 a0001c0001t0001g0199 a0001c0001t0001g0305 a0001c0001t0002g0062 a0001c0001t0002g0149 a0001c0001t0006g0078 a0001c0001t0006g0150 a0001c0001t0050g0091 a0001c0002t0009g0037	9	316	0.0285	38	c.130 others(57): Show c.130+20867_130+20868insCACACACACACACACACACACACACA CACACACACACA	TIMP2	ENSG00000035862.13	transcript	ENST00000262768.11	protein_coding	1/4			chr17	TogoVar
TLDC2_chr20_36871138_36899235	36880070	C C	CATATATA others(31): Show CATATATATATATATATATATATATATATATACATATAT	intron_variant intron_variant	MODIFIER	NA18953.hp2 NA18953.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0300 a0001c0001t0001g0300	1	384	0.0026	38	c.343 others(53): Show c.343-553_343-552insATATATATATATATATATATATATATATAT ATATATAC	TLDC2	ENSG00000101342.10	transcript	ENST00000217320.8	protein_coding	3/6		INFO_REALIGN_3_PRIME	chr20	TogoVar
TLDC2_chr20_36871138_36899235	36880070	C C	CATATATA others(31): Show CATATATATATATATATATATATATATATATATACATAT	intron_variant intron_variant	MODIFIER	HG00408.hp2 HG00408.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0234 a0001c0001t0001g0234	1	384	0.0026	38	c.343 others(53): Show c.343-554_343-553insTACATATATATATATATATATATATATATA TATATATA	TLDC2	ENSG00000101342.10	transcript	ENST00000217320.8	protein_coding	3/6		INFO_REALIGN_3_PRIME	chr20	TogoVar
TLDC2_chr20_36871138_36899235	36880070	C C	CATATATA others(31): Show CATATATATATATGTATATATATATATGTGTGTGTATAT	intron_variant intron_variant	MODIFIER	HG00099.hp1 HG01106.hp1 HG01433.hp1 others(17): Show HG00099.hp1 HG01106.hp1 HG01433.hp1 HG01433.hp2 HG02135.hp1 HG02135.hp2 HG02602.hp2 HG02735.hp1 HG04184.hp2 HG04199.hp1 NA18612.hp2 NA18957.hp1 NA18979.hp1 NA18980.hp2 NA18986.hp1 NA18990.hp1 NA18992.hp2 NA19080.hp2 NA19084.hp2 NA19091.hp2	a0001 a0002 a0003 others(2): Show a0001 a0002 a0003 a0004 a0007	a0001c0001 a0002c0003 a0003c0005 others(2): Show a0001c0001 a0002c0003 a0003c0005 a0004c0006 a0007c0009	a0001c0001t0001 a0001c0001t0011 a0002c0003t0001 others(3): Show a0001c0001t0001 a0001c0001t0011 a0002c0003t0001 a0003c0005t0001 a0004c0006t0001 a0007c0009t0001	a0001c0001t0001g0010 a0001c0001t0001g0085 a0001c0001t0001g0086 others(16): Show a0001c0001t0001g0010 a0001c0001t0001g0085 a0001c0001t0001g0086 a0001c0001t0001g0088 a0001c0001t0001g0110 a0001c0001t0001g0111 a0001c0001t0001g0125 a0001c0001t0001g0134 a0001c0001t0001g0182 a0001c0001t0001g0185 a0001c0001t0001g0186 a0001c0001t0001g0187 a0001c0001t0001g0188 a0001c0001t0001g0290 a0001c0001t0011g0184 a0002c0003t0001g0087 a0003c0005t0001g0010 a0004c0006t0001g0189 a0007c0009t0001g0183	20	384	0.0521	38	c.343 others(53): Show c.343-573_343-572insGTATATATATATATGTGTGTGTATATATAT ATATATAT	TLDC2	ENSG00000101342.10	transcript	ENST00000217320.8	protein_coding	3/6		INFO_REALIGN_3_PRIME	chr20	TogoVar
TLDC2_chr20_36871138_36899235	36880070	C C	CATATATA others(31): Show CATATATATATGTATATATATATATGTGTGTGTATATAT	intron_variant intron_variant	MODIFIER	HG00099.hp2 HG00280.hp1 HG01934.hp1 HG00099.hp2 HG00280.hp1 HG01934.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0043 a0001c0001t0001g0278 a0001c0001t0001g0296 a0001c0001t0001g0043 a0001c0001t0001g0278 a0001c0001t0001g0296	3	384	0.0078	38	c.343 others(53): Show c.343-575_343-574insGTATATATATATATGTGTGTGTATATATAT ATATATAT	TLDC2	ENSG00000101342.10	transcript	ENST00000217320.8	protein_coding	3/6		INFO_REALIGN_3_PRIME	chr20	TogoVar
TLDC2_chr20_36871138_36899235	36890396	C C	CTCTTTCT others(31): Show CTCTTTCTTTCTTTCTTTCTTTCTTTCTCTTTCTTTCTT	intron_variant intron_variant	MODIFIER	HG01361.hp1 HG01361.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0052 a0001c0002t0001g0052	1	384	0.0026	38	c.17 others(55): Show c.17+1018_*17+1019insCTCTTTCTTTCTTTCTTTCTTTCTTTCT TTCTTTCTTT	TLDC2	ENSG00000101342.10	transcript	ENST00000217320.8	protein_coding	6/6		INFO_REALIGN_3_PRIME	chr20	TogoVar
TLE1_chr9_81578683_81694547	81587907	C C	CGTGTGTG others(31): Show CGTGTGTGTGTGTGTGTGTGTGTCATCCCGCCTGTGTGT	intron_variant intron_variant	MODIFIER	NA19010.hp2 NA19010.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0314 a0001c0001t0003g0314	1	356	0.0028	38	c.183 others(53): Show c.1830-80_1830-79insACACACAGGCGGGATGACACACACACACAC ACACACAC	TLE1	ENSG00000196781.16	transcript	ENST00000376499.8	protein_coding	16/19			chr9	TogoVar
TLE1_chr9_81578683_81694547	81675698	G G	GTTTTTTT others(31): Show GTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	NA19057.hp2 NA19057.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0214 a0001c0001t0001g0214	1	356	0.0028	38	c.234 others(55): Show c.234+9977_234+9978insAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAA	TLE1	ENSG00000196781.16	transcript	ENST00000376499.8	protein_coding	4/19			chr9	TogoVar
TLK2_chr17_62473825_62620481	62505407	A A	ATTTTTTT others(31): Show ATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG02818.hp2 HG02818.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0010 a0001c0001t0010	a0001c0001t0010g0281 a0001c0001t0010g0281	1	292	0.0034	38	c.82- others(55): Show c.82-15340_82-15339insTTTTTTTTTTTTTTTTTTTTTTTTTTTT TTTTTTTTTT	TLK2	ENSG00000146872.19	transcript	ENST00000346027.10	protein_coding	2/21		INFO_REALIGN_3_PRIME	chr17	TogoVar
TLK2_chr17_62473825_62620481	62540400	A A	ATTTTTTT others(31): Show ATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	NA18986.hp1 NA18998.hp1 NA18986.hp1 NA18998.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0002 a0001c0002t0003 a0001c0002t0002 a0001c0002t0003	a0001c0002t0002g0039 a0001c0002t0003g0062 a0001c0002t0002g0039 a0001c0002t0003g0062	2	292	0.0069	38	c.531 others(55): Show c.531+4086_531+4087insTTTTTTTTTTTTTTTTTTTTTTTTTTTT TTTTTTTTTT	TLK2	ENSG00000146872.19	transcript	ENST00000346027.10	protein_coding	7/21		INFO_REALIGN_3_PRIME	chr17	TogoVar
TLL1_chr4_165868237_166109457	166052965	G G	GTGTATAT others(31): Show GTGTATATATATATATATATATATATATATATATATATA	intron_variant intron_variant	MODIFIER	HG00140.hp2 HG00642.hp1 HG01069.hp1 others(16): Show HG00140.hp2 HG00642.hp1 HG01069.hp1 HG01106.hp1 HG01167.hp2 HG01261.hp2 HG01952.hp2 HG02145.hp1 HG02818.hp2 HG02895.hp1 HG02897.hp2 HG03492.hp2 HG04199.hp2 NA18939.hp1 NA18988.hp2 NA19000.hp2 NA19002.hp2 NA19062.hp1 NA19074.hp2	a0001 a0002 a0004 others(1): Show a0001 a0002 a0004 a0006	a0001c0001 a0001c0003 a0001c0007 others(3): Show a0001c0001 a0001c0003 a0001c0007 a0002c0002 a0004c0006 a0006c0025	a0001c0001t0001 a0001c0001t0021 a0001c0001t0030 others(9): Show a0001c0001t0001 a0001c0001t0021 a0001c0001t0030 a0001c0001t0051 a0001c0001t0052 a0001c0001t0053 a0001c0003t0001 a0001c0007t0031 a0002c0002t0010 a0002c0002t0062 a0004c0006t0033 a0006c0025t0001	a0001c0001t0001g0066 a0001c0001t0001g0097 a0001c0001t0001g0099 others(16): Show a0001c0001t0001g0066 a0001c0001t0001g0097 a0001c0001t0001g0099 a0001c0001t0001g0110 a0001c0001t0001g0170 a0001c0001t0021g0233 a0001c0001t0030g0227 a0001c0001t0030g0245 a0001c0001t0051g0092 a0001c0001t0052g0086 a0001c0001t0053g0095 a0001c0003t0001g0100 a0001c0007t0031g0241 a0001c0007t0031g0242 a0002c0002t0010g0214 a0002c0002t0010g0216 a0002c0002t0062g0091 a0004c0006t0033g0029 a0006c0025t0001g0074	19	250	0.0760	38	c.152 others(57): Show c.1525-2110_1525-2109insGTATATATATATATATATATATATAT ATATATATATAT	TLL1	ENSG00000038295.8	transcript	ENST00000061240.7	protein_coding	12/20		INFO_REALIGN_3_PRIME	chr4	TogoVar
TLL1_chr4_165868237_166109457	166052965	G G	GTGTGTAT others(31): Show GTGTGTATATATATATATATATATATATATATATATATA	intron_variant intron_variant	MODIFIER	HG01070.hp2 HG02145.hp2 HG01070.hp2 HG02145.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0011 a0001c0001t0066 a0001c0001t0011 a0001c0001t0066	a0001c0001t0011g0184 a0001c0001t0066g0188 a0001c0001t0011g0184 a0001c0001t0066g0188	2	250	0.0080	38	c.152 others(57): Show c.1525-2110_1525-2109insGTGTATATATATATATATATATATAT ATATATATATAT	TLL1	ENSG00000038295.8	transcript	ENST00000061240.7	protein_coding	12/20		INFO_REALIGN_3_PRIME	chr4	TogoVar
TLL1_chr4_165868237_166109457	166052965	G G	GTGTGTGT others(31): Show GTGTGTGTGTGTGTATATATATATATATATATATATATA	intron_variant intron_variant	MODIFIER	HG03139.hp2 HG03139.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0041 a0001c0001t0041	a0001c0001t0041g0114 a0001c0001t0041g0114	1	250	0.0040	38	c.152 others(57): Show c.1525-2110_1525-2109insGTGTGTGTGTGTATATATATATATAT ATATATATATAT	TLL1	ENSG00000038295.8	transcript	ENST00000061240.7	protein_coding	12/20		INFO_REALIGN_3_PRIME	chr4	TogoVar
TLL2_chr10_96359608_96518926	96476240	A A	ATATATAT others(31): Show ATATATATATATATATATATATATATATATTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG00423.hp1 HG00558.hp1 NA18945.hp1 HG00423.hp1 HG00558.hp1 NA18945.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0179 a0001c0001t0001g0180 a0001c0001t0001g0221 a0001c0001t0001g0179 a0001c0001t0001g0180 a0001c0001t0001g0221	3	256	0.0117	38	c.286 others(55): Show c.286+4108_286+4109insAAAAAAAAAATATATATATATATATATA TATATATATA	TLL2	ENSG00000095587.9	transcript	ENST00000357947.4	protein_coding	2/20			chr10	TogoVar
TLL2_chr10_96359608_96518926	96476240	A A	ATATATAT others(31): Show ATATATATATATATATATATATATATATTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG01175.hp2 HG01256.hp2 HG01258.hp1 HG01175.hp2 HG01256.hp2 HG01258.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0002 a0001c0002t0004 a0001c0002t0002 a0001c0002t0004	a0001c0002t0002g0069 a0001c0002t0004g0169 a0001c0002t0004g0170 a0001c0002t0002g0069 a0001c0002t0004g0169 a0001c0002t0004g0170	3	256	0.0117	38	c.286 others(55): Show c.286+4108_286+4109insAAAAAAAAAAAATATATATATATATATA TATATATATA	TLL2	ENSG00000095587.9	transcript	ENST00000357947.4	protein_coding	2/20			chr10	TogoVar
TLN2_chr15_62385550_62849631	62689877	T T	TTTTTTTT others(31): Show TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA	intron_variant intron_variant	MODIFIER	HG01169.hp2 HG01169.hp2	a0001 a0001	a0001c0061 a0001c0061	a0001c0061t0001 a0001c0061t0001	a0001c0061t0001g0101 a0001c0061t0001g0101	1	144	0.0069	38	c.111 others(57): Show c.1114-2963_1114-2962insTTTTTTTTTTTTTTTTTTTTTTTTTT TTTTTTTTTTTA	TLN2	ENSG00000171914.17	transcript	ENST00000636159.2	protein_coding	12/58			chr15	TogoVar
TLR1_chr4_38791255_38809791	38792853	T T	TTATATAT others(31): Show TTATATATATATATATATATATATATATATATATATATA	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02074.hp1 HG02135.hp1 HG02818.hp1 others(3): Show HG02074.hp1 HG02135.hp1 HG02818.hp1 NA18987.hp1 NA19074.hp2 NA19077.hp2	a0001 a0004 a0001 a0004	a0001c0001 a0001c0008 a0004c0005 a0001c0001 a0001c0008 a0004c0005	a0001c0001t0002 a0001c0008t0001 a0004c0005t0003 a0001c0001t0002 a0001c0008t0001 a0004c0005t0003	a0001c0001t0002g0002 a0001c0001t0002g0044 a0001c0008t0001g0027 others(1): Show a0001c0001t0002g0002 a0001c0001t0002g0044 a0001c0008t0001g0027 a0004c0005t0003g0006	6	446	0.0135	38	c.36 others(49): Show c.3617_*3618insTATATATATATATATATATATATATATATATATA TATA	TLR1	ENSG00000174125.8	transcript	ENST00000308979.7	protein_coding		3401		chr4	TogoVar
TM9SF4_chr20_32104714_32172256	32123866	A A	ATATATAT others(31): Show ATATATATATATATATATATATATATTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG02970.hp2 HG02970.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0280 a0001c0001t0003g0280	1	298	0.0034	38	c.16- others(53): Show c.16-9146_16-9145insATATATATATATATATATATATATTTTTTT TTTTTTTT	TM9SF4	ENSG00000101337.16	transcript	ENST00000398022.7	protein_coding	1/17		INFO_REALIGN_3_PRIME	chr20	TogoVar
TMBIM4_chr12_66130846_66174996	66155335	T T	TGAGAGAG others(31): Show TGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA	intron_variant intron_variant	MODIFIER	HG00741.hp1 HG01069.hp2 NA19077.hp2 HG00741.hp1 HG01069.hp2 NA19077.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0019 a0001c0001t0001 a0001c0001t0019	a0001c0001t0001g0062 a0001c0001t0001g0104 a0001c0001t0019g0105 a0001c0001t0001g0062 a0001c0001t0001g0104 a0001c0001t0019g0105	3	352	0.0085	38	c.98- others(53): Show c.98-1888_98-1887insTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC TCTCTCTC	TMBIM4	ENSG00000155957.19	transcript	ENST00000358230.8	protein_coding	1/6			chr12	TogoVar
TMCC3_chr12_94562122_94655557	94592661	C C	CAAAAAAA others(31): Show CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	NA18975.hp2 NA19056.hp1 NA18975.hp2 NA19056.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0038 a0001c0002t0001g0039 a0001c0002t0001g0038 a0001c0002t0001g0039	2	378	0.0053	38	c.79- others(55): Show c.79-10124_79-10123insTTTTTTTTTTTTTTTTTTTTTTTTTTTT TTTTTTTTTT	TMCC3	ENSG00000057704.13	transcript	ENST00000261226.9	protein_coding	1/3			chr12	TogoVar
TMCC3_chr12_94562122_94655557	94594216	T T	TATATATA others(31): Show TATATATATATATATATATATATATATATATACACACAC	intron_variant intron_variant	MODIFIER	NA20300.hp2 NA20300.hp2	a0001 a0001	a0001c0004 a0001c0004	a0001c0004t0010 a0001c0004t0010	a0001c0004t0010g0053 a0001c0004t0010g0053	1	378	0.0027	38	c.79- others(55): Show c.79-11679_79-11678insGTGTGTGTATATATATATATATATATAT ATATATATAT	TMCC3	ENSG00000057704.13	transcript	ENST00000261226.9	protein_coding	1/3			chr12	TogoVar
TMCC3_chr12_94562122_94655557	94597124	C C	CATATATA others(31): Show CATATATATATATATATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG02109.hp2 HG02109.hp2	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0045 a0001c0003t0045	a0001c0003t0045g0236 a0001c0003t0045g0236	1	378	0.0027	38	c.79- others(55): Show c.79-14587_79-14586insATATATATATATATATATATATATATAT ATATATATAT	TMCC3	ENSG00000057704.13	transcript	ENST00000261226.9	protein_coding	1/3			chr12	TogoVar
TMCO4_chr1_19677240_19804916	19802922	C C	CATATATA others(31): Show CATATATATATATATATATATATATATATATATATATAT	upstream_gene_variant upstream_gene_variant	MODIFIER	HG03017.hp1 HG03017.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0002 a0001c0002t0002	a0001c0002t0002g0141 a0001c0002t0002g0141	1	312	0.0032	38	c.-32 others(49): Show c.-3248_-3247insATATATATATATATATATATATATATATATATAT ATAT	TMCO4	ENSG00000162542.14	transcript	ENST00000294543.11	protein_coding		3007		chr1	TogoVar
TMEFF1_chr9_100468149_100582636	100497320	C C	CTTTTTTT others(31): Show CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG00544.hp1 NA19000.hp2 HG00544.hp1 NA19000.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0005 a0001c0001t0002 a0001c0001t0005	a0001c0001t0002g0160 a0001c0001t0005g0158 a0001c0001t0002g0160 a0001c0001t0005g0158	2	242	0.0083	38	c.197 others(55): Show c.197-1421_197-1420insTTTTTTTTTTTTTTTTTTTTTTTTTTTT TTTTTTTTTT	TMEFF1	ENSG00000241697.5	transcript	ENST00000374879.5	protein_coding	1/9		INFO_REALIGN_3_PRIME	chr9	TogoVar
TMEFF2_chr2_191944046_192199933	192075285	T T	TTATATAT others(31): Show TTATATATATATATATAAATATATATATAAATATATATA	intron_variant intron_variant	MODIFIER	HG00621.hp2 HG00621.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0043 a0001c0001t0001g0043	1	164	0.0061	38	c.440 others(57): Show c.440-17511_440-17510insTATATATATTTATATATATATTTATA TATATATATATA	TMEFF2	ENSG00000144339.12	transcript	ENST00000272771.10	protein_coding	4/9			chr2	TogoVar
TMEFF2_chr2_191944046_192199933	192075290	T T	TATATATA others(31): Show TATATATATATATAAATATATATATATATATATATATAA	intron_variant intron_variant	MODIFIER	NA18982.hp1 NA18982.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0078 a0001c0001t0001g0078	1	164	0.0061	38	c.440 others(57): Show c.440-17516_440-17515insTTATATATATATATATATATATATTT ATATATATATAT	TMEFF2	ENSG00000144339.12	transcript	ENST00000272771.10	protein_coding	4/9			chr2	TogoVar
TMEM100_chr17_55714627_55727864	55719514	T T	TAACTTTA others(31): Show TAACTTTATTTGCATTGTATTAGATCTAACTGAGTAAGA	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02071.hp1 HG02071.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0001 a0001c0001t0001g0001	1	428	0.0023	38	c.11 others(49): Show c.1151_*1152insTCTTACTCAGTTAGATCTAATACAATGCAAATAA AGTT	TMEM100	ENSG00000166292.12	transcript	ENST00000424486.3	protein_coding		112		chr17	TogoVar
TMEM106A_chr17_43206875_43225041	43223459	T T	TACACACA others(31): Show TACACACACACACACACACACACACACACACACACACAC	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00438.hp2 HG01069.hp1 HG01496.hp1 others(9): Show HG00438.hp2 HG01069.hp1 HG01496.hp1 HG01975.hp1 HG02015.hp1 HG02074.hp2 HG03540.hp1 HG03688.hp1 NA18999.hp1 NA19086.hp1 NA20129.hp2 homoSapiens_chm13v2.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0013 a0001c0001t0015 a0001c0001t0002 a0001c0001t0013 a0001c0001t0015	a0001c0001t0002g0002 a0001c0001t0002g0003 a0001c0001t0002g0006 others(3): Show a0001c0001t0002g0002 a0001c0001t0002g0003 a0001c0001t0002g0006 a0001c0001t0002g0018 a0001c0001t0013g0014 a0001c0001t0015g0003	12	374	0.0321	38	c.56 others(49): Show c.5658_*5659insACACACACACACACACACACACACACACACACAC ACAC	TMEM106A	ENSG00000184988.8	transcript	ENST00000612339.4	protein_coding		3419		chr17	TogoVar
TMEM108_chr3_133033391_133402775	133073510	C C	CTCTCTCT others(31): Show CTCTCTCTCTCTCTCTCTCTCTCTATATATATATATATA	intron_variant intron_variant	MODIFIER	HG02738.hp2 HG02738.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0152 a0001c0001t0002g0152	1	220	0.0046	38	c.-47 others(57): Show c.-47+27491_-47+27492insCTCTCTCTCTCTCTCTCTCTCTATAT ATATATATATAT	TMEM108	ENSG00000144868.14	transcript	ENST00000321871.11	protein_coding	2/5		INFO_REALIGN_3_PRIME	chr3	TogoVar
TMEM108_chr3_133033391_133402775	133078140	A A	AGTGTGTG others(31): Show AGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT	intron_variant intron_variant	MODIFIER	HG02258.hp2 HG02818.hp2 HG02895.hp1 others(1): Show HG02258.hp2 HG02818.hp2 HG02895.hp1 NA18522.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 others(1): Show a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 a0001c0001t0008	a0001c0001t0002g0020 a0001c0001t0003g0095 a0001c0001t0004g0090 others(1): Show a0001c0001t0002g0020 a0001c0001t0003g0095 a0001c0001t0004g0090 a0001c0001t0008g0094	4	220	0.0182	38	c.-47 others(57): Show c.-47+32139_-47+32140insTGTGTGTGTGTGTGTGTGTGTGTGTG TGTGTGTGTGTG	TMEM108	ENSG00000144868.14	transcript	ENST00000321871.11	protein_coding	2/5		INFO_REALIGN_3_PRIME	chr3	TogoVar
TMEM108_chr3_133033391_133402775	133342544	G G	GTATATAT others(31): Show GTATATATATATATATATATATATATATATATATATATA	intron_variant intron_variant	MODIFIER	HG02451.hp2 HG02572.hp2 HG03579.hp1 others(1): Show HG02451.hp2 HG02572.hp2 HG03579.hp1 HG03579.hp2	a0001 a0001	a0001c0002 a0001c0003 a0001c0006 a0001c0002 a0001c0003 a0001c0006	a0001c0002t0013 a0001c0003t0005 a0001c0006t0010 a0001c0002t0013 a0001c0003t0005 a0001c0006t0010	a0001c0002t0013g0170 a0001c0003t0005g0062 a0001c0003t0005g0122 others(1): Show a0001c0002t0013g0170 a0001c0003t0005g0062 a0001c0003t0005g0122 a0001c0006t0010g0011	4	220	0.0182	38	c.41- others(55): Show c.41-37196_41-37195insTATATATATATATATATATATATATATA TATATATATA	TMEM108	ENSG00000144868.14	transcript	ENST00000321871.11	protein_coding	3/5		INFO_REALIGN_3_PRIME	chr3	TogoVar
TMEM108_chr3_133033391_133402775	133342544	G G	GTGTATAT others(31): Show GTGTATATATATATATATATATATATATATATATATATA	intron_variant intron_variant	MODIFIER	HG00140.hp1 HG01993.hp2 HG00140.hp1 HG01993.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0003 a0001c0001t0002g0183 a0001c0001t0002g0003 a0001c0001t0002g0183	2	220	0.0091	38	c.41- others(55): Show c.41-37207_41-37206insGTATATATATATATATATATATATATAT ATATATATAT	TMEM108	ENSG00000144868.14	transcript	ENST00000321871.11	protein_coding	3/5		INFO_REALIGN_3_PRIME	chr3	TogoVar
TMEM108_chr3_133033391_133402775	133342555	T T	TATATATA others(31): Show TATATATATATATATATATATATATATATATATATATAC	intron_variant intron_variant	MODIFIER	HG01074.hp2 HG02895.hp1 NA18942.hp2 others(2): Show HG01074.hp2 HG02895.hp1 NA18942.hp2 NA18950.hp1 NA18977.hp2	a0001 a0001	a0001c0001 a0001c0008 a0001c0001 a0001c0008	a0001c0001t0002 a0001c0001t0008 a0001c0008t0008 a0001c0001t0002 a0001c0001t0008 a0001c0008t0008	a0001c0001t0002g0055 a0001c0001t0002g0115 a0001c0001t0002g0131 others(2): Show a0001c0001t0002g0055 a0001c0001t0002g0115 a0001c0001t0002g0131 a0001c0001t0008g0094 a0001c0008t0008g0178	5	220	0.0227	38	c.41- others(55): Show c.41-37196_41-37195insTATATATATATATATATATATATATATA TATATATACA	TMEM108	ENSG00000144868.14	transcript	ENST00000321871.11	protein_coding	3/5		INFO_REALIGN_3_PRIME	chr3	TogoVar
TMEM120A_chr7_75981831_75999595	75989102	A A	AGGGGTGG others(31): Show AGGGGTGGAGGTTGAGGGGGGGGAGGGGTGGAGGTTGAG	intron_variant intron_variant	MODIFIER	HG02895.hp1 HG02895.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0097 a0001c0001t0001g0097	1	368	0.0027	38	c.377 others(51): Show c.377+62_377+63insCTCAACCTCCACCCCTCCCCCCCCTCAACCTC CACCCC	TMEM120A	ENSG00000189077.11	transcript	ENST00000493111.7	protein_coding	4/11			chr7	TogoVar
TMEM120B_chr12_121707752_121787068	121747310	C C	CTGGGGTA others(31): Show CTGGGGTAAAAGGTGGGAGGCTGGGGTAGAAGGTGGGAG	intron_variant intron_variant	MODIFIER	HG01167.hp2 HG01167.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0022 a0002c0002t0022	a0002c0002t0022g0304 a0002c0002t0022g0304	1	314	0.0032	38	c.189 others(55): Show c.189-1016_189-1015insTGGGGTAAAAGGTGGGAGGCTGGGGTAG AAGGTGGGAG	TMEM120B	ENSG00000188735.13	transcript	ENST00000449592.7	protein_coding	2/11			chr12	TogoVar
TMEM120B_chr12_121707752_121787068	121747310	C C	CTGGGGTA others(31): Show CTGGGGTAGAAGGCGGGAGTCTGGGGTAGAAGGCGGGAG	intron_variant intron_variant	MODIFIER	HG00558.hp2 HG00558.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0001 a0002c0002t0001	a0002c0002t0001g0177 a0002c0002t0001g0177	1	314	0.0032	38	c.189 others(55): Show c.189-1016_189-1015insTGGGGTAGAAGGCGGGAGTCTGGGGTAG AAGGCGGGAG	TMEM120B	ENSG00000188735.13	transcript	ENST00000449592.7	protein_coding	2/11			chr12	TogoVar
TMEM120B_chr12_121707752_121787068	121747874	C C	CTGGGGTA others(31): Show CTGGGGTAGAAGGCGGGAGTCTGGGGTAGAAGGCGGGAG	intron_variant intron_variant	MODIFIER	HG02630.hp1 HG02630.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0018 a0001c0001t0018	a0001c0001t0018g0140 a0001c0001t0018g0140	1	314	0.0032	38	c.189 others(53): Show c.189-452_189-451insTGGGGTAGAAGGCGGGAGTCTGGGGTAGAA GGCGGGAG	TMEM120B	ENSG00000188735.13	transcript	ENST00000449592.7	protein_coding	2/11			chr12	TogoVar
TMEM120B_chr12_121707752_121787068	121747874	C C	CTGGGGTA others(31): Show CTGGGGTAGAAGGTGGGAGGCTGGGGTAAAAGGTGGGAG	intron_variant intron_variant	MODIFIER	HG01169.hp2 HG01169.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0080 a0001c0001t0080	a0001c0001t0080g0150 a0001c0001t0080g0150	1	314	0.0032	38	c.189 others(53): Show c.189-452_189-451insTGGGGTAGAAGGTGGGAGGCTGGGGTAAAA GGTGGGAG	TMEM120B	ENSG00000188735.13	transcript	ENST00000449592.7	protein_coding	2/11			chr12	TogoVar
TMEM120B_chr12_121707752_121787068	121747958	C C	CTGGGGTA others(31): Show CTGGGGTAGAAGGCGGGAGTCTGGGGTAGAAGGCGGGAG	intron_variant intron_variant	MODIFIER	HG01257.hp1 HG01257.hp1	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0017 a0002c0002t0017	a0002c0002t0017g0088 a0002c0002t0017g0088	1	314	0.0032	38	c.189 others(53): Show c.189-368_189-367insTGGGGTAGAAGGCGGGAGTCTGGGGTAGAA GGCGGGAG	TMEM120B	ENSG00000188735.13	transcript	ENST00000449592.7	protein_coding	2/11			chr12	TogoVar
TMEM120B_chr12_121707752_121787068	121748000	C C	CTGGGGTA others(31): Show CTGGGGTAGAAGGCGGGAGTCTGGGGTAGAAGGCGGGAG	intron_variant intron_variant	MODIFIER	HG01433.hp2 HG01496.hp1 HG02004.hp1 HG01433.hp2 HG01496.hp1 HG02004.hp1	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0014 a0002c0002t0077 a0002c0002t0014 a0002c0002t0077	a0002c0002t0014g0227 a0002c0002t0014g0228 a0002c0002t0077g0257 a0002c0002t0014g0227 a0002c0002t0014g0228 a0002c0002t0077g0257	3	314	0.0096	38	c.189 others(53): Show c.189-326_189-325insTGGGGTAGAAGGCGGGAGTCTGGGGTAGAA GGCGGGAG	TMEM120B	ENSG00000188735.13	transcript	ENST00000449592.7	protein_coding	2/11			chr12	TogoVar
TMEM121_chr14_105521583_105535198	105521599	T T	TTCTTTCT others(31): Show TTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTCTC	upstream_gene_variant upstream_gene_variant	MODIFIER	NA19000.hp1 NA19000.hp1	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0002 a0002c0002t0002	a0002c0002t0002g0001 a0002c0002t0002g0001	1	352	0.0028	38	c.-51 others(49): Show c.-5168_-5167insTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTC TCTC	TMEM121	ENSG00000184986.12	transcript	ENST00000392519.7	protein_coding		4983		chr14	TogoVar
TMEM121_chr14_105521583_105535198	105521599	T T	TTCTTTCT others(31): Show TTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTC	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02055.hp2 HG02572.hp2 HG02055.hp2 HG02572.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0002 a0002c0002t0003 a0002c0002t0002 a0002c0002t0003	a0002c0002t0002g0001 a0002c0002t0003g0002 a0002c0002t0002g0001 a0002c0002t0003g0002	2	352	0.0057	38	c.-51 others(49): Show c.-5168_-5167insTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTC TTTC	TMEM121	ENSG00000184986.12	transcript	ENST00000392519.7	protein_coding		4983		chr14	TogoVar
TMEM130_chr7_98841490_98875014	98842382	A A	AATATATA others(31): Show AATATATATATATATATATATATATATATATATATATAT	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02135.hp1 NA18979.hp2 HG02135.hp1 NA18979.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0134 a0001c0001t0001g0249 a0001c0001t0001g0134 a0001c0001t0001g0249	2	380	0.0053	38	c.56 others(49): Show c.5673_*5674insATATATATATATATATATATATATATATATATAT ATAT	TMEM130	ENSG00000166448.15	transcript	ENST00000339375.9	protein_coding		4107		chr7	TogoVar
TMEM130_chr7_98841490_98875014	98842386	A A	AATATATA others(31): Show AATATATATATATATATATATATATATATATATATATAT	downstream_gene_variant downstream_gene_variant	MODIFIER	HG03688.hp1 HG03688.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0112 a0001c0001t0001g0112	1	380	0.0026	38	c.56 others(49): Show c.5669_*5670insATATATATATATATATATATATATATATATATAT ATAT	TMEM130	ENSG00000166448.15	transcript	ENST00000339375.9	protein_coding		4103		chr7	TogoVar
TMEM130_chr7_98841490_98875014	98842402	T T	TATATATA others(31): Show TATATATATATATATATATATATATATATATATATATAC	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01257.hp2 NA18971.hp2 HG01257.hp2 NA18971.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0004 a0001c0002t0002 a0001c0001t0004 a0001c0002t0002	a0001c0001t0004g0175 a0001c0002t0002g0313 a0001c0001t0004g0175 a0001c0002t0002g0313	2	380	0.0053	38	c.56 others(49): Show c.5653_*5654insGTATATATATATATATATATATATATATATATAT ATAT	TMEM130	ENSG00000166448.15	transcript	ENST00000339375.9	protein_coding		4087		chr7	TogoVar
TMEM132B_chr12_125181386_125667369	125575057	C C	CATATATA others(31): Show CATATATATATATATATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG01346.hp2 HG01346.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0009 a0001c0002t0001g0009	1	128	0.0078	38	c.129 others(57): Show c.1294-8768_1294-8767insATATATATATATATATATATATATAT ATATATATATAT	TMEM132B	ENSG00000139364.11	transcript	ENST00000682704.1	protein_coding	4/8		INFO_REALIGN_3_PRIME	chr12	TogoVar
TMEM132C_chr12_128262170_128712911	128269347	C C	CGTGTGTG others(31): Show CGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT	intron_variant intron_variant	MODIFIER	HG06807.hp1 HG06807.hp1	a0005 a0005	a0005c0051 a0005c0051	a0005c0051t0003 a0005c0051t0003	a0005c0051t0003g0167 a0005c0051t0003g0167	1	170	0.0059	38	c.85+ others(53): Show c.85+1890_85+1891insGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT GTGTGTGT	TMEM132C	ENSG00000181234.10	transcript	ENST00000435159.3	protein_coding	1/8		INFO_REALIGN_3_PRIME	chr12	TogoVar
TMEM132C_chr12_128262170_128712911	128338757	A A	AATATATA others(31): Show AATATATATATATATATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG02258.hp2 HG02486.hp1 HG02886.hp1 others(1): Show HG02258.hp2 HG02486.hp1 HG02886.hp1 HG03195.hp2	a0002 a0003 a0014 others(1): Show a0002 a0003 a0014 a0025	a0002c0018 a0003c0016 a0014c0068 others(1): Show a0002c0018 a0003c0016 a0014c0068 a0025c0054	a0002c0018t0002 a0003c0016t0008 a0014c0068t0003 others(1): Show a0002c0018t0002 a0003c0016t0008 a0014c0068t0003 a0025c0054t0001	a0002c0018t0002g0136 a0003c0016t0008g0092 a0014c0068t0003g0085 others(1): Show a0002c0018t0002g0136 a0003c0016t0008g0092 a0014c0068t0003g0085 a0025c0054t0001g0008	4	170	0.0235	38	c.85+ others(55): Show c.85+71290_85+71291insATATATATATATATATATATATATATAT ATATATATAT	TMEM132C	ENSG00000181234.10	transcript	ENST00000435159.3	protein_coding	1/8		INFO_REALIGN_3_PRIME	chr12	TogoVar

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