Joint Open Genome and Omics Platform (JoGo)

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Snpeff annotation impact detail

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view	regionname	pos	ref	alt	annotation	impact	samples	ahapids	chapids	thapids	thapids	ac	an	af	len	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	distance	status	chr	external
	ZNHIT6_chr1_85644417_85713433	85667961	A A	AAAAAAAA others(31): Show AAAAAAAAAAAAAAAAAAAAAAAAAAAAAATATATATAT	intron_variant intron_variant	MODIFIER	HG03471.hp1 HG03471.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0202 a0001c0001t0003g0202	1	50	0.0200	38	c.124 others(57): Show c.1247+9274_1247+9275insATATATATATTTTTTTTTTTTTTTTT TTTTTTTTTTTT		ZNHIT6	ENSG00000117174.11	transcript	ENST00000370574.4	protein_coding	8/9						chr1	TogoVar
	ZNHIT6_chr1_85644417_85713433	85667961	A A	AAAAAAAA others(31): Show AAAAAAAAAAAAAAAAAAAAAAAATATATATATATATAT	intron_variant intron_variant	MODIFIER	NA20129.hp1 NA20129.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0010 a0001c0001t0010	a0001c0001t0010g0128 a0001c0001t0010g0128	1	50	0.0200	38	c.124 others(57): Show c.1247+9274_1247+9275insATATATATATATATATTTTTTTTTTT TTTTTTTTTTTT		ZNHIT6	ENSG00000117174.11	transcript	ENST00000370574.4	protein_coding	8/9						chr1	TogoVar
	ZNHIT6_chr1_85644417_85713433	85667961	A A	AAAAAAAA others(31): Show AAAAAAAAAAAAAAAAAATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG03017.hp1 HG04204.hp2 HG03017.hp1 HG04204.hp2	a0001 a0005 a0001 a0005	a0001c0001 a0005c0004 a0001c0001 a0005c0004	a0001c0001t0011 a0005c0004t0011 a0001c0001t0011 a0005c0004t0011	a0001c0001t0011g0126 a0005c0004t0011g0042 a0001c0001t0011g0126 a0005c0004t0011g0042	2	51	0.0392	38	c.124 others(57): Show c.1247+9274_1247+9275insATATATATATATATATATATATTTTT TTTTTTTTTTTT		ZNHIT6	ENSG00000117174.11	transcript	ENST00000370574.4	protein_coding	8/9						chr1	TogoVar
	ZNHIT6_chr1_85644417_85713433	85667961	A A	AAAAAAAA others(31): Show AAAAAAAAAAAAAAAATATGTATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG02723.hp1 HG02723.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0032 a0001c0001t0032	a0001c0001t0032g0213 a0001c0001t0032g0213	1	50	0.0200	38	c.124 others(57): Show c.1247+9274_1247+9275insATATATATATATATATATACATATTT TTTTTTTTTTTT		ZNHIT6	ENSG00000117174.11	transcript	ENST00000370574.4	protein_coding	8/9						chr1	TogoVar
	ZNHIT6_chr1_85644417_85713433	85667961	A A	AAAAAAAA others(31): Show AAAAAAAAAAAAAAAATGTATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG03225.hp2 NA18955.hp2 HG03225.hp2 NA18955.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0006 a0001c0001t0033 a0001c0001t0006 a0001c0001t0033	a0001c0001t0006g0163 a0001c0001t0033g0108 a0001c0001t0006g0163 a0001c0001t0033g0108	2	51	0.0392	38	c.124 others(57): Show c.1247+9274_1247+9275insATATATATATATATATATATACATTT TTTTTTTTTTTT		ZNHIT6	ENSG00000117174.11	transcript	ENST00000370574.4	protein_coding	8/9						chr1	TogoVar
	ZNRF3_chr22_28878572_29062488	28890615	G G	GCCTTAAA others(31): Show GCCTTAAAGTGGATAGGTTATGGAAGGAAAGAATCTTGA	intron_variant intron_variant	MODIFIER	NA19055.hp2 NA19055.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0041 a0001c0001t0001g0041	1	268	0.0037	38	c.300 others(55): Show c.300+6550_300+6587dupCCTTAAAGTGGATAGGTTATGGAAGGAA AGAATCTTGA		ZNRF3	ENSG00000183579.16	transcript	ENST00000544604.7	protein_coding	1/8					INFO_REALIGN_3_PRIME	chr22	TogoVar
	ZP4_chr1_237877404_237895922	237883753	G G	GAGGGAGA others(31): Show GAGGGAGAGAGAGGGAGGGAGAGAGAGGAAGAGAGAGGA	intron_variant intron_variant	MODIFIER	HG02818.hp2 HG02818.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0191 a0001c0001t0001g0191	1	227	0.0044	38	c.139 others(55): Show c.1391-908_1391-907insTCCTCTCTCTTCCTCTCTCTCCCTCCCT CTCTCTCCCT		ZP4	ENSG00000116996.10	transcript	ENST00000366570.5	protein_coding	10/11						chr1	TogoVar
	ZPBP_chr7_49932441_50098246	49981617	T T	TAATTATA others(31): Show TAATTATATAAATTATATATTATATAATTATATAAATTA	intron_variant intron_variant	MODIFIER	HG00280.hp2 HG03239.hp2 HG00280.hp2 HG03239.hp2	a0001 a0001	a0001c0004 a0001c0004	a0001c0004t0001 a0001c0004t0001	a0001c0004t0001g0237 a0001c0004t0001g0238 a0001c0004t0001g0237 a0001c0004t0001g0238	2	172	0.0116	38	c.961 others(55): Show c.961+1724_961+1725insTAATTTATATAATTATATAATATATAAT TTATATAATT		ZPBP	ENSG00000042813.8	transcript	ENST00000046087.7	protein_coding	7/7						chr7	TogoVar
	ZRANB3_chr2_135191969_135536218	135272414	C C	CTTTTTTT others(31): Show CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG03704.hp2 HG03704.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0002 a0002c0002t0002	a0002c0002t0002g0203 a0002c0002t0002g0203	1	72	0.0139	38	c.108 others(55): Show c.1087-528_1087-527insAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAA		ZRANB3	ENSG00000121988.18	transcript	ENST00000264159.11	protein_coding	9/20						chr2	TogoVar
	ZSCAN21_chr7_100044774_100070040	100051178	C C	CAAAAAAA others(31): Show CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG01361.hp2 HG02080.hp2 HG01361.hp2 HG02080.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0194 a0001c0001t0003g0195 a0001c0001t0003g0194 a0001c0001t0003g0195	2	59	0.0339	38	c.-97 others(55): Show c.-97+1362_-97+1363insAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAA		ZSCAN21	ENSG00000166529.16	transcript	ENST00000292450.9	protein_coding	1/3					INFO_REALIGN_3_PRIME	chr7	TogoVar
	ZSWIM9_chr19_48165680_48202620	48192470	A A	AGTATATA others(31): Show AGTATATATATATATATATATATATATATATATGTGTAT	intron_variant intron_variant	MODIFIER	HG02818.hp2 HG02818.hp2	a0002 a0002	a0002c0006 a0002c0006	a0002c0006t0003 a0002c0006t0003	a0002c0006t0003g0279 a0002c0006t0003g0279	1	226	0.0044	38	c.589 others(55): Show c.589-2183_589-2182insGTATATATATATATATATATATATATAT ATATGTGTAT		ZSWIM9	ENSG00000185453.13	transcript	ENST00000614654.2	protein_coding	3/3						chr19	TogoVar
	ZSWIM9_chr19_48165680_48202620	48192498	T T	TATATATA others(31): Show TATATATATATATATATATATATATATATATATATACAC	intron_variant intron_variant	MODIFIER	HG02818.hp1 HG02818.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0217 a0001c0002t0001g0217	1	217	0.0046	38	c.589 others(55): Show c.589-2154_589-2153insTATATATATATATATATATATATATATA TATATACACA		ZSWIM9	ENSG00000185453.13	transcript	ENST00000614654.2	protein_coding	3/3					INFO_REALIGN_3_PRIME	chr19	TogoVar
	ZWILCH_chr15_66500326_66555130	66517430	G G	GTGTGTGT others(31): Show GTGTGTGTGTATATATATATATATATATATATATATATA	intron_variant intron_variant	MODIFIER	NA19010.hp2 NA19083.hp2 NA19010.hp2 NA19083.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0345 a0001c0001t0001g0346 a0001c0001t0001g0345 a0001c0001t0001g0346	2	49	0.0408	38	c.321 others(55): Show c.321-1448_321-1447insGTGTGTGTATATATATATATATATATAT ATATATATAT		ZWILCH	ENSG00000174442.12	transcript	ENST00000307897.10	protein_coding	4/18					INFO_REALIGN_3_PRIME	chr15	TogoVar
	ZYG11B_chr1_52721453_52832336	52767307	T T	TGTTATGT others(31): Show TGTTATGTTGTTATTTTATTTTATGTTATGTTATATTAC	intron_variant intron_variant	MODIFIER	HG03710.hp2 HG03710.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0005 a0001c0001t0005	a0001c0001t0005g0047 a0001c0001t0005g0047	1	347	0.0029	38	c.197 others(55): Show c.197-3705_197-3704insGTTATTTTATTTTATGTTATGTTATATT ACGTTATGTT		ZYG11B	ENSG00000162378.13	transcript	ENST00000294353.7	protein_coding	2/13					INFO_REALIGN_3_PRIME	chr1	TogoVar
	ZYG11B_chr1_52721453_52832336	52783838	A A	ATGTACAT others(31): Show ATGTACATACACGTGTGCGTATGTACATACACGTGTGCG	intron_variant intron_variant	MODIFIER	HG02083.hp1 NA19054.hp2 HG02083.hp1 NA19054.hp2	a0001 a0001	a0001c0001 a0001c0004 a0001c0001 a0001c0004	a0001c0001t0009 a0001c0004t0009 a0001c0001t0009 a0001c0004t0009	a0001c0001t0009g0050 a0001c0004t0009g0056 a0001c0001t0009g0050 a0001c0004t0009g0056	2	184	0.0109	38	c.109 others(57): Show c.1093-1038_1093-1037insGTACATACACGTGTGCGTATGTACAT ACACGTGTGCGT		ZYG11B	ENSG00000162378.13	transcript	ENST00000294353.7	protein_coding	4/13					INFO_REALIGN_3_PRIME	chr1	TogoVar
	ZYG11B_chr1_52721453_52832336	52783914	A A	ATACATAT others(31): Show ATACATATATGTGTATATACATCTATACATGTGTATATG	intron_variant intron_variant	MODIFIER	HG00140.hp1 HG00140.hp2 HG00323.hp1 others(168): Show HG00140.hp1 HG00140.hp2 HG00323.hp1 HG00323.hp2 HG00423.hp2 HG00438.hp2 HG00544.hp1 HG00558.hp2 HG00597.hp1 HG00597.hp2 HG00609.hp2 HG00621.hp1 HG00642.hp1 HG00642.hp2 HG00735.hp1 HG00735.hp2 HG00738.hp1 HG01069.hp1 HG01071.hp2 HG01106.hp1 HG01109.hp1 HG01109.hp2 HG01167.hp2 HG01175.hp1 HG01192.hp1 HG01243.hp1 HG01243.hp2 HG01255.hp2 HG01257.hp1 HG01257.hp2 HG01258.hp1 HG01346.hp2 HG01515.hp1 HG01516.hp1 HG01516.hp2 HG01884.hp1 HG01884.hp2 HG01891.hp1 HG01928.hp1 HG01975.hp2 HG01978.hp1 HG01993.hp1 HG02055.hp2 HG02074.hp2 HG02083.hp1 HG02109.hp2 HG02129.hp1 HG02135.hp1 HG02145.hp2 HG02155.hp2 HG02165.hp2 HG02258.hp2 HG02293.hp1 HG02451.hp1 HG02486.hp2 HG02523.hp1 HG02523.hp2 HG02630.hp1 HG02683.hp2 HG02698.hp1 HG02738.hp1 HG02738.hp2 HG02818.hp1 HG02895.hp1 HG02896.hp2 HG02897.hp1 HG02922.hp2 HG02970.hp1 HG02970.hp2 HG03017.hp2 HG03130.hp2 HG03139.hp2 HG03239.hp2 HG03471.hp1 HG03516.hp2 HG03540.hp1 HG03688.hp2 HG03704.hp1 HG03831.hp1 HG03927.hp1 HG04199.hp2 HG04204.hp1 HG04204.hp2 HG04228.hp1 HG04228.hp2 NA18612.hp1 NA18612.hp2 NA18747.hp1 NA18747.hp2 NA18906.hp1 NA18906.hp2 NA18939.hp1 NA18939.hp2 NA18941.hp1 NA18943.hp2 NA18944.hp1 NA18946.hp1 NA18948.hp1 NA18949.hp1 NA18954.hp1 NA18956.hp1 NA18959.hp2 NA18960.hp2 NA18961.hp1 NA18961.hp2 NA18964.hp1 NA18964.hp2 NA18970.hp2 NA18971.hp1 NA18971.hp2 NA18972.hp1 NA18972.hp2 NA18973.hp1 NA18973.hp2 NA18974.hp2 NA18975.hp1 NA18978.hp1 NA18979.hp1 NA18981.hp1 NA18981.hp2 NA18982.hp1 NA18983.hp1 NA18983.hp2 NA18984.hp1 NA18984.hp2 NA18986.hp1 NA18986.hp2 NA18988.hp1 NA18988.hp2 NA18989.hp2 NA18990.hp1 NA18991.hp1 NA18998.hp1 NA18998.hp2 NA18999.hp1 NA19000.hp2 NA19001.hp1 NA19002.hp1 NA19004.hp2 NA19006.hp2 NA19007.hp2 NA19009.hp2 NA19010.hp1 NA19011.hp1 NA19011.hp2 NA19012.hp1 NA19012.hp2 NA19054.hp2 NA19056.hp2 NA19058.hp2 NA19060.hp1 NA19060.hp2 NA19062.hp1 NA19062.hp2 NA19064.hp1 NA19065.hp2 NA19070.hp1 NA19078.hp2 NA19079.hp1 NA19079.hp2 NA19080.hp2 NA19081.hp1 NA19082.hp1 NA19082.hp2 NA19087.hp1 NA19088.hp1 NA19090.hp1 NA19091.hp2 NA19240.hp1 NA20300.hp2 NA21309.hp1	a0001 a0001	a0001c0001 a0001c0003 a0001c0004 others(1): Show a0001c0001 a0001c0003 a0001c0004 a0001c0005	a0001c0001t0001 a0001c0001t0004 a0001c0001t0005 others(46): Show a0001c0001t0001 a0001c0001t0004 a0001c0001t0005 a0001c0001t0006 a0001c0001t0007 a0001c0001t0009 a0001c0001t0011 a0001c0001t0013 a0001c0001t0016 a0001c0001t0018 a0001c0001t0019 a0001c0001t0021 a0001c0001t0022 a0001c0001t0023 a0001c0001t0026 a0001c0001t0027 a0001c0001t0029 a0001c0001t0030 a0001c0001t0032 a0001c0001t0033 a0001c0001t0036 a0001c0001t0037 a0001c0001t0038 a0001c0001t0040 a0001c0001t0044 a0001c0001t0056 a0001c0001t0058 a0001c0001t0059 a0001c0001t0060 a0001c0001t0061 a0001c0001t0062 a0001c0001t0065 a0001c0001t0066 a0001c0001t0067 a0001c0001t0068 a0001c0001t0069 a0001c0001t0072 a0001c0001t0073 a0001c0001t0075 a0001c0001t0076 a0001c0001t0078 a0001c0001t0081 a0001c0003t0012 a0001c0003t0015 a0001c0003t0020 a0001c0003t0035 a0001c0003t0074 a0001c0004t0009 a0001c0005t0005	a0001c0001t0001g0001 a0001c0001t0001g0043 a0001c0001t0001g0044 others(168): Show a0001c0001t0001g0001 a0001c0001t0001g0043 a0001c0001t0001g0044 a0001c0001t0001g0045 a0001c0001t0001g0046 a0001c0001t0001g0048 a0001c0001t0001g0049 a0001c0001t0001g0060 a0001c0001t0001g0061 a0001c0001t0001g0062 a0001c0001t0001g0063 a0001c0001t0001g0064 a0001c0001t0001g0065 a0001c0001t0001g0066 a0001c0001t0001g0067 a0001c0001t0001g0069 a0001c0001t0001g0071 a0001c0001t0001g0072 a0001c0001t0001g0073 a0001c0001t0001g0074 a0001c0001t0001g0075 a0001c0001t0001g0077 a0001c0001t0001g0080 a0001c0001t0001g0083 a0001c0001t0001g0084 a0001c0001t0001g0085 a0001c0001t0001g0090 a0001c0001t0001g0091 a0001c0001t0001g0092 a0001c0001t0001g0094 a0001c0001t0001g0096 a0001c0001t0001g0100 a0001c0001t0001g0111 a0001c0001t0001g0113 a0001c0001t0001g0117 a0001c0001t0001g0118 a0001c0001t0001g0119 a0001c0001t0001g0120 a0001c0001t0001g0121 a0001c0001t0001g0122 a0001c0001t0001g0123 a0001c0001t0001g0124 a0001c0001t0001g0125 a0001c0001t0001g0130 a0001c0001t0001g0131 a0001c0001t0001g0132 a0001c0001t0001g0133 a0001c0001t0001g0135 a0001c0001t0001g0138 a0001c0001t0001g0139 a0001c0001t0001g0142 a0001c0001t0001g0144 a0001c0001t0001g0146 a0001c0001t0001g0148 a0001c0001t0001g0149 a0001c0001t0001g0161 a0001c0001t0001g0257 a0001c0001t0001g0259 a0001c0001t0001g0348 a0001c0001t0004g0006 a0001c0001t0004g0009 a0001c0001t0004g0011 a0001c0001t0004g0013 a0001c0001t0004g0021 a0001c0001t0004g0024 a0001c0001t0004g0025 a0001c0001t0004g0027 a0001c0001t0004g0028 a0001c0001t0004g0030 a0001c0001t0004g0031 a0001c0001t0004g0032 a0001c0001t0004g0033 a0001c0001t0004g0034 a0001c0001t0004g0035 a0001c0001t0004g0037 a0001c0001t0004g0038 a0001c0001t0004g0195 a0001c0001t0005g0199 a0001c0001t0005g0346 a0001c0001t0005g0347 a0001c0001t0006g0177 a0001c0001t0006g0181 a0001c0001t0006g0184 a0001c0001t0006g0188 a0001c0001t0007g0059 a0001c0001t0007g0078 a0001c0001t0007g0106 a0001c0001t0007g0107 a0001c0001t0007g0108 a0001c0001t0007g0109 a0001c0001t0007g0110 a0001c0001t0007g0112 a0001c0001t0007g0114 a0001c0001t0007g0115 a0001c0001t0009g0050 a0001c0001t0009g0052 a0001c0001t0009g0054 a0001c0001t0009g0058 a0001c0001t0009g0147 a0001c0001t0011g0086 a0001c0001t0011g0126 a0001c0001t0011g0153 a0001c0001t0011g0155 a0001c0001t0011g0156 a0001c0001t0013g0081 a0001c0001t0013g0082 a0001c0001t0013g0093 a0001c0001t0013g0097 a0001c0001t0013g0098 a0001c0001t0016g0015 a0001c0001t0016g0016 a0001c0001t0016g0017 a0001c0001t0016g0040 a0001c0001t0018g0079 a0001c0001t0018g0104 a0001c0001t0018g0141 a0001c0001t0019g0087 a0001c0001t0019g0127 a0001c0001t0019g0128 a0001c0001t0021g0051 a0001c0001t0021g0053 a0001c0001t0022g0170 a0001c0001t0022g0171 a0001c0001t0023g0286 a0001c0001t0026g0116 a0001c0001t0026g0129 a0001c0001t0027g0137 a0001c0001t0027g0140 a0001c0001t0029g0350 a0001c0001t0029g0351 a0001c0001t0030g0070 a0001c0001t0030g0145 a0001c0001t0032g0076 a0001c0001t0032g0099 a0001c0001t0033g0095 a0001c0001t0033g0134 a0001c0001t0036g0012 a0001c0001t0036g0042 a0001c0001t0037g0167 a0001c0001t0038g0275 a0001c0001t0040g0169 a0001c0001t0044g0277 a0001c0001t0056g0057 a0001c0001t0058g0150 a0001c0001t0059g0151 a0001c0001t0060g0154 a0001c0001t0061g0160 a0001c0001t0062g0089 a0001c0001t0065g0068 a0001c0001t0066g0349 a0001c0001t0067g0352 a0001c0001t0068g0143 a0001c0001t0069g0263 a0001c0001t0072g0233 a0001c0001t0073g0088 a0001c0001t0075g0158 a0001c0001t0076g0157 a0001c0001t0078g0039 a0001c0001t0081g0010 a0001c0003t0012g0342 a0001c0003t0015g0209 a0001c0003t0020g0201 a0001c0003t0020g0203 a0001c0003t0020g0208 a0001c0003t0035g0276 a0001c0003t0035g0344 a0001c0003t0074g0159 a0001c0004t0009g0055 a0001c0004t0009g0056 a0001c0005t0005g0343 a0001c0005t0005g0345	171	220	0.7773	38	c.109 others(55): Show c.1093-934_1093-933insGTGTATATGTACATATATGTGTATATAC ATCTATACAT		ZYG11B	ENSG00000162378.13	transcript	ENST00000294353.7	protein_coding	4/13					INFO_REALIGN_3_PRIME	chr1	TogoVar