Joint Open Genome and Omics Platform (JoGo)

Search by Variant

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Chr

Chromosome name (e.g., chr11).

Snpeff genename

Exact SnpEff gene name.

Sampleids

Target sampleid (e.g. HG02615).

Snpeff haplotype class

Haplotype-annotation class (e.g., ahapid, ahapid+chapid).

Snpeff annotation impact

Exact impact level (e.g., HIGH, MODERATE, LOW).

Snpeff annotation impact detail

Keyword match in SnpEff annotation.

Hapid

One or more haplotype IDs (comma-separated; e.g., a0001, a01, a0001c0001, a01c02, a1c2, a0001c0001t0005, a0001c0001t0005g0018).

Samplehapid

Sample haplotype IDs to include (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

No_hapid

Haplotype IDs to exclude (comma-separated; e.g., a0001, a0002, a0001c0001, a0001c0001t0005, a1, a01).

No_samplehapid

Sample haplotype IDs to exclude (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

Start

Start position (GRCh38).

End

End position (GRCh38).

Minac

Minimum alternate allele count (≥).

Maxac

Maximum alternate allele count (≤).

Minlen

Minimum variant length (≥).

Maxlen

Maximum variant length (≤).

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regionname	pos	ref	alt	annotation	impact	samples	ahapids	achapids	acthapids	actghapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	external
GNG8_chr19_46628953_46641202	46635608	A A	ATGGGGTG others(31): Show ATGGGGTGGGAGAGGATGGGGTGATGGAGGGAGGGGGTG	intron_variant intron_variant	MODIFIER	HG02717.hp2 HG03516.hp1 HG06807.hp2 others(1): Show HG02717.hp2 HG03516.hp1 HG06807.hp2 NA19240.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0001 a0001c0002t0001 a0001c0001t0001 a0001c0002t0001	a0001c0001t0001g0027 a0001c0002t0001g0066 a0001c0001t0001g0027 a0001c0002t0001g0066	4	438	0.0091	38	c.-44 others(53): Show c.-44+538_-44+539insCACCCCCTCCCTCCATCACCCCATCCTCTC CCACCCCA	GNG8	ENSG00000167414.5	transcript	ENST00000693335.1	protein_coding	1/2			chr19	TogoVar
GNPTAB_chr12_101740499_101835959	101833182	A A	AAAATATA others(31): Show AAAATATATATATATATATATATATATATATATATATAT	upstream_gene_variant upstream_gene_variant	MODIFIER	NA19011.hp1 NA19011.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0004	a0001c0001t0004g0251 a0001c0001t0004g0251	1	392	0.0026	38	c.-25 others(49): Show c.-2508_-2507insATATATATATATATATATATATATATATATATAT ATTT	GNPTAB	ENSG00000111670.16	transcript	ENST00000299314.12	protein_coding		2224		chr12	TogoVar
GNPTAB_chr12_101740499_101835959	101833182	A A	AATATATA others(31): Show AATATATATATATATATATATATATATATATATATATAT	upstream_gene_variant upstream_gene_variant	MODIFIER	NA18944.hp2 NA18944.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0004	a0001c0001t0004g0271 a0001c0001t0004g0271	1	392	0.0026	38	c.-25 others(49): Show c.-2508_-2507insATATATATATATATATATATATATATATATATAT ATAT	GNPTAB	ENSG00000111670.16	transcript	ENST00000299314.12	protein_coding		2224		chr12	TogoVar
GOLGA3_chr12_132763914_132833869	132791594	C C	CTGCAGAG others(31): Show CTGCAGAGTTGTTACACTGAGGACTATAGGAGGGGAATG	intron_variant intron_variant	MODIFIER	NA19006.hp1 NA19006.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0137 a0001c0001t0001g0137	1	308	0.0033	38	c.247 others(55): Show c.2470-339_2470-302dupCATTCCCCTCCTATAGTCCTCAGTGTAA CAACTCTGCA	GOLGA3	ENSG00000090615.16	transcript	ENST00000450791.8	protein_coding	11/23			chr12	TogoVar
GOLT1A_chr1_204193163_204218988	204200299	G G	GTGTGTGT others(31): Show GTGTGTGTGTATATATATATATATATATATATATATATA	intron_variant intron_variant	MODIFIER	NA19030.hp2 NA19030.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0205 a0001c0002t0001g0205	1	414	0.0024	38	c.297 others(55): Show c.297-1042_297-1041insTATATATATATATATATATATATATATA TACACACACA	GOLT1A	ENSG00000174567.8	transcript	ENST00000308302.4	protein_coding	3/4			chr1	TogoVar
GOLT1A_chr1_204193163_204218988	204200299	G G	GTGTGTGT others(31): Show GTGTGTGTGTGTATATATATATATATATATATATATATA	intron_variant intron_variant	MODIFIER	HG02717.hp2 HG03471.hp2 HG02717.hp2 HG03471.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0035 a0001c0002t0001g0035	2	414	0.0048	38	c.297 others(55): Show c.297-1042_297-1041insTATATATATATATATATATATATATATA CACACACACA	GOLT1A	ENSG00000174567.8	transcript	ENST00000308302.4	protein_coding	3/4			chr1	TogoVar
GPAA1_chr8_144077634_144091216	144089617	T T	TACATATA others(31): Show TACATATATATATATACATATATATATATATACACATAC	downstream_gene_variant downstream_gene_variant	MODIFIER	NA19030.hp2 NA19030.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0001 a0001c0001t0001g0001	1	338	0.0030	38	c.34 others(49): Show c.3492_*3493insACATATATATATATACATATATATATATATACAC ATAC	GPAA1	ENSG00000197858.12	transcript	ENST00000355091.9	protein_coding		3402		chr8	TogoVar
GPAA1_chr8_144077634_144091216	144089689	T T	TATATATA others(31): Show TATATATATATATATATATACATATATATATGTATATAC	downstream_gene_variant downstream_gene_variant	MODIFIER	NA18982.hp2 NA18982.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0007 a0001c0001t0001g0007	1	338	0.0030	38	c.35 others(49): Show c.3564_*3565insATATATATATATATATATACATATATATATGTAT ATAC	GPAA1	ENSG00000197858.12	transcript	ENST00000355091.9	protein_coding		3474		chr8	TogoVar
GPATCH8_chr17_44390281_44508406	44453500	G G	GGTGTGTG others(31): Show GGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT	intron_variant intron_variant	MODIFIER	HG03041.hp1 HG03579.hp2 HG03041.hp1 HG03579.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0148 a0001c0001t0001g0161 a0001c0001t0001g0148 a0001c0001t0001g0161	2	326	0.0061	38	c.193 others(57): Show c.193+10971_193+10972insACACACACACACACACACACACACAC ACACACACACAC	GPATCH8	ENSG00000186566.13	transcript	ENST00000591680.6	protein_coding	3/7			chr17	TogoVar
GPC5_chr13_91393621_92872237	92740960	G G	GTATATAT others(31): Show GTATATATATATATATATATATATATATATATATATATA	intron_variant intron_variant	MODIFIER	HG01891.hp2 HG02280.hp2 HG01891.hp2 HG02280.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0002c0002 a0001c0001 a0002c0002	a0001c0001t0001 a0002c0002t0004 a0001c0001t0001 a0002c0002t0004	a0001c0001t0001g0018 a0002c0002t0004g0026 a0001c0001t0001g0018 a0002c0002t0004g0026	2	42	0.0476	38	c.156 others(61): Show c.1562-125311_1562-125310insATATATATATATATATATATAT ATATATATATATATAT	GPC5	ENSG00000179399.16	transcript	ENST00000377067.9	protein_coding	7/7		INFO_REALIGN_3_PRIME	chr13	TogoVar
GPC6_chr13_93221807_94413020	93561404	G G	GATATATA others(31): Show GATATATATATATATATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG02970.hp2 HG03486.hp1 HG02970.hp2 HG03486.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0034 a0001c0001t0001 a0001c0001t0034	a0001c0001t0001g0029 a0001c0001t0034g0076 a0001c0001t0001g0029 a0001c0001t0034g0076	2	76	0.0263	38	c.319 others(57): Show c.319+16005_319+16006insATATATATATATATATATATATATAT ATATATATATAT	GPC6	ENSG00000183098.12	transcript	ENST00000377047.9	protein_coding	2/8		INFO_REALIGN_3_PRIME	chr13	TogoVar
GPC6_chr13_93221807_94413020	94150814	G G	GTATATAT others(31): Show GTATATATATATATATATATATATATATATATATATATA	intron_variant intron_variant	MODIFIER	HG01981.hp1 HG02615.hp1 HG02818.hp1 others(3): Show HG01981.hp1 HG02615.hp1 HG02818.hp1 HG03017.hp2 HG03540.hp2 NA20752.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0003 a0001c0001t0007 others(3): Show a0001c0001t0001 a0001c0001t0003 a0001c0001t0007 a0001c0001t0009 a0001c0001t0017 a0001c0001t0036	a0001c0001t0001g0009 a0001c0001t0003g0065 a0001c0001t0007g0052 others(3): Show a0001c0001t0001g0009 a0001c0001t0003g0065 a0001c0001t0007g0052 a0001c0001t0009g0016 a0001c0001t0017g0056 a0001c0001t0036g0001	6	76	0.0790	38	c.877 others(59): Show c.877+122937_877+122938insATATATATATATATATATATATAT ATATATATATATAT	GPC6	ENSG00000183098.12	transcript	ENST00000377047.9	protein_coding	4/8		INFO_REALIGN_3_PRIME	chr13	TogoVar
GPCPD1_chr20_5539439_5616006	5615204	A A	AAAAAAAA others(31): Show AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAT	upstream_gene_variant upstream_gene_variant	MODIFIER	HG03704.hp1 HG03704.hp1	a0001 a0001	a0001c0004 a0001c0004	a0001c0004t0039 a0001c0004t0039	a0001c0004t0039g0295 a0001c0004t0039g0295	1	386	0.0026	38	c.-43 others(49): Show c.-4392_-4391insATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT TTTT	GPCPD1	ENSG00000125772.14	transcript	ENST00000379019.7	protein_coding		4199		chr20	TogoVar
GPHN_chr14_66503147_67186803	66629089	A A	ATATATAT others(31): Show ATATATATAAATATATATTTATATACATATATAAATATG	intron_variant intron_variant	MODIFIER	HG01255.hp1 HG01255.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0098 a0001c0001t0001g0098	1	234	0.0043	38	c.65- others(55): Show c.65-52012_65-52011insTAAATATATATTTATATACATATATAAA TATGTATATA	GPHN	ENSG00000171723.16	transcript	ENST00000478722.6	protein_coding	1/22		INFO_REALIGN_3_PRIME	chr14	TogoVar
GPHN_chr14_66503147_67186803	67144286	T T	TATATATA others(31): Show TATATATATACATACATATATATATATATATATATATAC	intron_variant intron_variant	MODIFIER	HG01934.hp1 HG01943.hp2 HG01934.hp1 HG01943.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0111 a0001c0001t0001g0121 a0001c0001t0001g0111 a0001c0001t0001g0121	2	234	0.0086	38	c.183 others(55): Show c.1836+838_1836+839insTATATATACATACATATATATATATATA TATATATACA	GPHN	ENSG00000171723.16	transcript	ENST00000478722.6	protein_coding	18/22		INFO_REALIGN_3_PRIME	chr14	TogoVar
GPHN_chr14_66503147_67186803	67144286	T T	TATATATA others(31): Show TATATATATATATACATATATATATATATATATATATAC	intron_variant intron_variant	MODIFIER	HG00423.hp1 NA18991.hp1 HG00423.hp1 NA18991.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0185 a0001c0001t0001g0192 a0001c0001t0001g0185 a0001c0001t0001g0192	2	234	0.0086	38	c.183 others(55): Show c.1836+838_1836+839insTATATATATATACATATATATATATATA TATATATACA	GPHN	ENSG00000171723.16	transcript	ENST00000478722.6	protein_coding	18/22		INFO_REALIGN_3_PRIME	chr14	TogoVar
GPHN_chr14_66503147_67186803	67144286	T T	TATATATA others(31): Show TATATATATATATATACATATATATATATATATATATAC	intron_variant intron_variant	MODIFIER	HG03831.hp1 HG03831.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0221 a0001c0001t0001g0221	1	234	0.0043	38	c.183 others(55): Show c.1836+838_1836+839insTATATATATATATACATATATATATATA TATATATACA	GPHN	ENSG00000171723.16	transcript	ENST00000478722.6	protein_coding	18/22		INFO_REALIGN_3_PRIME	chr14	TogoVar
GPM6A_chr4_175627937_175817264	175668519	A A	ATGTGTGT others(31): Show ATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG	intron_variant intron_variant	MODIFIER	HG01975.hp1 HG01975.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0232 a0001c0001t0003g0232	1	270	0.0037	38	c.387 others(55): Show c.387+5160_387+5161insCACACACACACACACACACACACACACA CACACACACA	GPM6A	ENSG00000150625.17	transcript	ENST00000393658.7	protein_coding	3/6			chr4	TogoVar
GPN2_chr1_26871132_26895283	26878592	T T	TTTTGAAG others(31): Show TTTTGAAGTACACCTTTTTTTTGAGACAAAGTCTCGCTC	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG03209.hp2 HG03209.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0026 a0001c0001t0026	a0001c0001t0026g0058 a0001c0001t0026g0058	1	258	0.0039	38	c.10 others(49): Show c.1047_*1084dupGAGCGAGACTTTGTCTCAAAAAAAAGGTGTACTT CAAA	GPN2	ENSG00000142751.15	transcript	ENST00000374135.9	protein_coding	5/5	1084		chr1	TogoVar
GPR182_chr12_56989492_57003447	56992978	G G	GTATATAT others(31): Show GTATATATATATATATATATATATATATATATATATATA	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00323.hp1 HG00733.hp2 HG01261.hp2 others(2): Show HG00323.hp1 HG00733.hp2 HG01261.hp2 HG02451.hp2 NA18971.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0001 a0001c0001t0001g0001	5	324	0.0154	38	c.-16 others(49): Show c.-1687_-1686insTATATATATATATATATATATATATATATATATA TATA	GPR182	ENSG00000166856.3	transcript	ENST00000300098.3	protein_coding		1513		chr12	TogoVar
GPR182_chr12_56989492_57003447	56992997	T T	TATATATA others(31): Show TATATATATATATATATATATATATATATATATATATAC	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01515.hp2 HG01515.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0001 a0001c0001t0001g0001	1	324	0.0031	38	c.-16 others(49): Show c.-1668_-1667insATATATATATATATATATATATATATATATATAT ATAC	GPR182	ENSG00000166856.3	transcript	ENST00000300098.3	protein_coding		1494		chr12	TogoVar
GPR26_chr10_123661355_123702399	123675798	C C	CTGTGTGT others(31): Show CTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTACGTGTG	intron_variant intron_variant	MODIFIER	HG02451.hp2 HG03225.hp1 HG02451.hp2 HG03225.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0014 a0001c0002t0018 a0001c0002t0014 a0001c0002t0018	a0001c0002t0014g0133 a0001c0002t0018g0134 a0001c0002t0014g0133 a0001c0002t0018g0134	2	412	0.0049	38	c.782 others(53): Show c.782+886_782+887insGTGTGTGTGTGTACGTGTGTGTGTGTGTGT GTGTGTGT	GPR26	ENSG00000154478.4	transcript	ENST00000284674.2	protein_coding	2/2		INFO_REALIGN_3_PRIME	chr10	TogoVar
GPR35_chr2_240620480_240638159	240623293	G G	GAAACAGG others(31): Show GAAACAGGTCGTGAGGGCGCAAACAGGTCGTGAGGGCGC	upstream_gene_variant upstream_gene_variant	MODIFIER	HG03688.hp2 HG03688.hp2	a0004 a0004	a0004c0004 a0004c0004	a0004c0004t0006 a0004c0004t0006	a0004c0004t0006g0014 a0004c0004t0006g0014	1	400	0.0025	38	c.-22 others(49): Show c.-2280_-2279insAAACAGGTCGTGAGGGCGCAAACAGGTCGTGAGG GCGC	GPR35	ENSG00000178623.13	transcript	ENST00000407714.2	protein_coding		2186		chr2	TogoVar
GPR35_chr2_240620480_240638159	240623303	A A	ATGAGGGT others(31): Show ATGAGGGTGCAAACAGGTCATGAGGGTGCAAACAGGTCG	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02257.hp1 HG03453.hp2 HG02257.hp1 HG03453.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0004 a0002c0002t0004	a0002c0002t0004g0010 a0002c0002t0004g0010	2	400	0.0050	38	c.-22 others(49): Show c.-2270_-2269insTGAGGGTGCAAACAGGTCATGAGGGTGCAAACAG GTCG	GPR35	ENSG00000178623.13	transcript	ENST00000407714.2	protein_coding		2176		chr2	TogoVar
GPR35_chr2_240620480_240638159	240623303	A A	ATGAGGGT others(31): Show ATGAGGGTGCAAACAGGTCGTGAGGGCGCAAACAGGTCG	upstream_gene_variant upstream_gene_variant	MODIFIER	HG03471.hp2 HG03471.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0004 a0002c0002t0004	a0002c0002t0004g0010 a0002c0002t0004g0010	1	400	0.0025	38	c.-22 others(49): Show c.-2270_-2269insTGAGGGTGCAAACAGGTCGTGAGGGCGCAAACAG GTCG	GPR35	ENSG00000178623.13	transcript	ENST00000407714.2	protein_coding		2176		chr2	TogoVar
GPR35_chr2_240620480_240638159	240623360	G G	GTGAGGGT others(31): Show GTGAGGGTGCAAACAGGTCGTGAGGGTGCAAACAGGTCA	upstream_gene_variant upstream_gene_variant	MODIFIER	HG03704.hp2 HG03704.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0021 a0001c0001t0003g0021	1	400	0.0025	38	c.-22 others(49): Show c.-2213_-2212insTGAGGGTGCAAACAGGTCGTGAGGGTGCAAACAG GTCA	GPR35	ENSG00000178623.13	transcript	ENST00000407714.2	protein_coding		2119		chr2	TogoVar
GPR35_chr2_240620480_240638159	240623379	G G	GTGAGGGT others(31): Show GTGAGGGTGCAAACAGGTCGTGAGGGTGCAAACAGGTCA	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02615.hp2 HG02615.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0005 a0002c0002t0005	a0002c0002t0005g0161 a0002c0002t0005g0161	1	400	0.0025	38	c.-21 others(49): Show c.-2194_-2193insTGAGGGTGCAAACAGGTCGTGAGGGTGCAAACAG GTCA	GPR35	ENSG00000178623.13	transcript	ENST00000407714.2	protein_coding		2100		chr2	TogoVar
GPR35_chr2_240620480_240638159	240623386	C C	CGCAAACA others(31): Show CGCAAACAGGTCGTGAGGGCGCAAACAGGTCGTGAGGGT	upstream_gene_variant upstream_gene_variant	MODIFIER	NA18941.hp2 NA18941.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0001 a0002c0002t0001	a0002c0002t0001g0001 a0002c0002t0001g0001	1	400	0.0025	38	c.-21 others(49): Show c.-2187_-2186insGCAAACAGGTCGTGAGGGCGCAAACAGGTCGTGA GGGT	GPR35	ENSG00000178623.13	transcript	ENST00000407714.2	protein_coding		2093		chr2	TogoVar
GPR35_chr2_240620480_240638159	240623405	C C	CGCAAACA others(31): Show CGCAAACAGGTCGTGAGGGCGCAAATAGGTCGTGAGGGT	upstream_gene_variant upstream_gene_variant	MODIFIER	HG06807.hp2 HG06807.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0008 a0002c0002t0008	a0002c0002t0008g0020 a0002c0002t0008g0020	1	400	0.0025	38	c.-21 others(49): Show c.-2168_-2167insGCAAACAGGTCGTGAGGGCGCAAATAGGTCGTGA GGGT	GPR35	ENSG00000178623.13	transcript	ENST00000407714.2	protein_coding		2074		chr2	TogoVar
GPR35_chr2_240620480_240638159	240623414	A A	ATCGTGAG others(31): Show ATCGTGAGGGCGCAAACAGGTCGTGAGGGTGCAAACAGG	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01123.hp2 HG01123.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0004 a0002c0002t0004	a0002c0002t0004g0028 a0002c0002t0004g0028	1	400	0.0025	38	c.-21 others(49): Show c.-2159_-2158insTCGTGAGGGCGCAAACAGGTCGTGAGGGTGCAAA CAGG	GPR35	ENSG00000178623.13	transcript	ENST00000407714.2	protein_coding		2065		chr2	TogoVar
GPR35_chr2_240620480_240638159	240623414	A A	GTCGTGAG others(31): Show GTCGTGAGGGCGCAAACAGGTCGTGAGGGCGCAAACAGA	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02809.hp2 HG02809.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0004 a0002c0002t0004	a0002c0002t0004g0010 a0002c0002t0004g0010	1	400	0.0025	38	c.-21 others(49): Show c.-2197_-2160dupGTCGTGAGGGCGCAAACAGGTCGTGAGGGCGCAA ACAG	GPR35	ENSG00000178623.13	transcript	ENST00000407714.2	protein_coding		2066		chr2	TogoVar
GPR35_chr2_240620480_240638159	240623424	C C	TGCAAACA others(31): Show TGCAAACAGGTCGTGAGGGTGCAAACAGGTCATGAGGGC	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00609.hp1 NA18963.hp2 NA19000.hp1 others(1): Show HG00609.hp1 NA18963.hp2 NA19000.hp1 NA20752.hp1	a0001 a0003 a0001 a0003	a0001c0001 a0003c0003 a0001c0001 a0003c0003	a0001c0001t0003 a0003c0003t0001 a0001c0001t0003 a0003c0003t0001	a0001c0001t0003g0004 a0001c0001t0003g0005 a0003c0003t0001g0024 a0001c0001t0003g0004 a0001c0001t0003g0005 a0003c0003t0001g0024	4	400	0.0100	38	c.-21 others(49): Show c.-2150_-2149insTGCAAACAGGTCGTGAGGGTGCAAACAGGTCATG AGGG	GPR35	ENSG00000178623.13	transcript	ENST00000407714.2	protein_coding		2056		chr2	TogoVar
GPR35_chr2_240620480_240638159	240623443	C C	CGCAAACA others(31): Show CGCAAACAGGTCATGAGGGCGCAAACAGGTCGTGAGGGT	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01993.hp1 HG01993.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0021 a0001c0001t0003g0021	1	400	0.0025	38	c.-21 others(49): Show c.-2130_-2129insGCAAACAGGTCATGAGGGCGCAAACAGGTCGTGA GGGT	GPR35	ENSG00000178623.13	transcript	ENST00000407714.2	protein_coding		2036		chr2	TogoVar
GPR35_chr2_240620480_240638159	240623462	T T	TGCAAACA others(31): Show TGCAAACAGGTCGTGAGGGTGCAAACAGGTCGTGAGGGC	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00735.hp2 NA18940.hp2 NA18960.hp2 others(4): Show HG00735.hp2 NA18940.hp2 NA18960.hp2 NA18961.hp2 NA18963.hp1 NA19003.hp2 NA19056.hp1	a0001 a0003 a0001 a0003	a0001c0001 a0003c0003 a0001c0001 a0003c0003	a0001c0001t0002 a0003c0003t0001 a0001c0001t0002 a0003c0003t0001	a0001c0001t0002g0039 a0001c0001t0002g0040 a0001c0001t0002g0090 others(2): Show a0001c0001t0002g0039 a0001c0001t0002g0040 a0001c0001t0002g0090 a0001c0001t0002g0091 a0003c0003t0001g0025	7	400	0.0175	38	c.-21 others(49): Show c.-2111_-2110insGCAAACAGGTCGTGAGGGTGCAAACAGGTCGTGA GGGC	GPR35	ENSG00000178623.13	transcript	ENST00000407714.2	protein_coding		2017		chr2	TogoVar
GPR39_chr2_132411805_132651582	132415532	A A	AGGGCTTG others(31): Show AGGGCTTGTGCTAGGCCTGCGGGCTTGTGCTAGGCCTGC	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00544.hp2 HG02257.hp2 HG03098.hp2 others(1): Show HG00544.hp2 HG02257.hp2 HG03098.hp2 NA18949.hp1	a0002 a0002	a0002c0003 a0002c0003	a0002c0003t0001 a0002c0003t0002 a0002c0003t0004 a0002c0003t0001 a0002c0003t0002 a0002c0003t0004	a0002c0003t0001g0202 a0002c0003t0002g0203 a0002c0003t0002g0205 others(1): Show a0002c0003t0001g0202 a0002c0003t0002g0203 a0002c0003t0002g0205 a0002c0003t0004g0204	4	208	0.0192	38	c.-15 others(49): Show c.-1511_-1510insGGGCTTGTGCTAGGCCTGCGGGCTTGTGCTAGGC CTGC	GPR39	ENSG00000183840.8	transcript	ENST00000329321.4	protein_coding		1272		chr2	TogoVar
GPR42_chr19_35366068_35377962	35375425	G G	GAAGAAAG others(31): Show GAAGAAAGAAAGAGAGAAAGAAAGAAAAGGAAAGAAGGA	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00621.hp1 HG00642.hp2 HG01109.hp2 others(22): Show HG00621.hp1 HG00642.hp2 HG01109.hp2 HG01123.hp1 HG01169.hp2 HG01261.hp1 HG01516.hp2 HG01517.hp1 HG02055.hp2 HG02071.hp1 HG02132.hp2 HG02273.hp2 HG02559.hp2 HG02622.hp2 HG02976.hp1 HG03041.hp1 HG03098.hp1 HG03834.hp1 HG04115.hp1 HG04199.hp1 HG04228.hp1 NA18954.hp1 NA18990.hp2 NA19081.hp2 NA20905.hp2	a0001 a0002 a0010 others(1): Show a0001 a0002 a0010 a0012	a0001c0001 a0002c0032 a0010c0018 others(1): Show a0001c0001 a0002c0032 a0010c0018 a0012c0012	a0001c0001t0001 a0002c0032t0001 a0010c0018t0004 others(1): Show a0001c0001t0001 a0002c0032t0001 a0010c0018t0004 a0012c0012t0001	a0001c0001t0001g0001 a0001c0001t0001g0003 a0002c0032t0001g0002 others(2): Show a0001c0001t0001g0001 a0001c0001t0001g0003 a0002c0032t0001g0002 a0010c0018t0004g0001 a0012c0012t0001g0001	25	399	0.0627	38	c.30 others(49): Show c.3025_*3026insAAGAAAGAAAGAGAGAAAGAAAGAAAAGGAAAGA AGGA	GPR42	ENSG00000126251.7	transcript	ENST00000454971.3	protein_coding		2464		chr19	TogoVar
GPR4_chr19_45584764_45607212	45594078	A A	ATATATAT others(31): Show ATATATATATATATATATATATATATTTTATATATATTT	intron_variant intron_variant	MODIFIER	HG03490.hp2 HG03492.hp2 HG03704.hp2 others(1): Show HG03490.hp2 HG03492.hp2 HG03704.hp2 HG03942.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0005 a0001c0001t0005	a0001c0001t0005g0020 a0001c0001t0005g0114 a0001c0001t0005g0245 a0001c0001t0005g0020 a0001c0001t0005g0114 a0001c0001t0005g0245	4	450	0.0089	38	c.-83 others(57): Show c.-831-1382_-831-1381insAAATATATATAAAATATATATATATA TATATATATATA	GPR4	ENSG00000177464.5	transcript	ENST00000323040.5	protein_coding	1/1			chr19	TogoVar
GPR4_chr19_45584764_45607212	45594078	A A	ATATATAT others(31): Show ATATATATATATATATATATATATTTTTTATATATATTT	intron_variant intron_variant	MODIFIER	HG01346.hp2 HG01346.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0005 a0001c0001t0005	a0001c0001t0005g0319 a0001c0001t0005g0319	1	450	0.0022	38	c.-83 others(57): Show c.-831-1382_-831-1381insAAATATATATAAAAAATATATATATA TATATATATATA	GPR4	ENSG00000177464.5	transcript	ENST00000323040.5	protein_coding	1/1			chr19	TogoVar
GPR88_chr1_100533139_100547021	100538629	C C	CTCTCTCT others(31): Show CTCTCTCTCTCTCTCTCTCTGTGTGTGTGTGTGTGTGTG	intron_variant intron_variant	MODIFIER	NA18948.hp1 NA18948.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0073 a0001c0001t0001g0073	1	426	0.0024	38	c.-74 others(53): Show c.-74+128_-74+129insCTCTCTCTCTCTCTCTCTGTGTGTGTGTGT GTGTGTGT	GPR88	ENSG00000181656.7	transcript	ENST00000315033.5	protein_coding	1/1		INFO_REALIGN_3_PRIME	chr1	TogoVar
GPRC5A_chr12_12886562_12922937	12914594	T T	TTCTTTCT others(31): Show TTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTCTCTCTC	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	NA18978.hp1 NA18978.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0235 a0001c0001t0235	a0001c0001t0235g0350 a0001c0001t0235g0350	1	396	0.0025	38	c.20 others(49): Show c.2058_*2059insTTCTTTCTTTCTTTCTTTCTTTCTTTCTCTCTCT CTCT	GPRC5A	ENSG00000013588.10	transcript	ENST00000014914.6	protein_coding	4/4	2059	INFO_REALIGN_3_PRIME	chr12	TogoVar
GPRC5D_chr12_12935575_12957170	12936505	T T	TCCCCACC others(31): Show TCCCCACCCCCCCCCCCCCCCTGCGACCCCCCCCCCCCC	downstream_gene_variant downstream_gene_variant	MODIFIER	NA18963.hp1 NA18963.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0324 a0001c0001t0001g0324	1	406	0.0025	38	c.42 others(49): Show c.4269_*4270insGGGGGGGGGGGGGTCGCAGGGGGGGGGGGGGGGT GGGG	GPRC5D	ENSG00000111291.9	transcript	ENST00000228887.6	protein_coding		4069		chr12	TogoVar
GPRC5D_chr12_12935575_12957170	12956446	T T	TTTCCTTC others(31): Show TTTCCTTCCTTCCTTCTCCTTCCTTTTTCCTCCCCTTCC	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02735.hp2 HG04115.hp2 NA20752.hp2 HG02735.hp2 HG04115.hp2 NA20752.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0079 a0001c0002t0001g0130 a0001c0002t0001g0135 a0001c0002t0001g0079 a0001c0002t0001g0130 a0001c0002t0001g0135	3	406	0.0074	38	c.-43 others(49): Show c.-4386_-4385insGGAAGGGGAGGAAAAAGGAAGGAGAAGGAAGGAA GGAA	GPRC5D	ENSG00000111291.9	transcript	ENST00000228887.6	protein_coding		4277		chr12	TogoVar
GPRC5D_chr12_12935575_12957170	12956446	T T	TTTCCTTC others(31): Show TTTCCTTCCTTCCTTCTCCTTCCTTTTTCCTCCTTTTCC	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01993.hp1 HG02135.hp1 NA18943.hp2 others(6): Show HG01993.hp1 HG02135.hp1 NA18943.hp2 NA18952.hp2 NA18965.hp1 NA18995.hp2 NA18999.hp1 NA19079.hp2 NA20300.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0003 a0001c0001t0001 a0001c0001t0003	a0001c0001t0001g0012 a0001c0001t0001g0170 a0001c0001t0001g0176 others(6): Show a0001c0001t0001g0012 a0001c0001t0001g0170 a0001c0001t0001g0176 a0001c0001t0001g0202 a0001c0001t0001g0210 a0001c0001t0001g0212 a0001c0001t0001g0213 a0001c0001t0001g0217 a0001c0001t0003g0384	9	406	0.0222	38	c.-43 others(49): Show c.-4386_-4385insGGAAAAGGAGGAAAAAGGAAGGAGAAGGAAGGAA GGAA	GPRC5D	ENSG00000111291.9	transcript	ENST00000228887.6	protein_coding		4277		chr12	TogoVar
GPRC5D_chr12_12935575_12957170	12956486	T T	TCCTTCCT others(31): Show TCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTTC	upstream_gene_variant upstream_gene_variant	MODIFIER	HG03688.hp2 HG03688.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0128 a0001c0002t0001g0128	1	406	0.0025	38	c.-44 others(49): Show c.-4426_-4425insGAAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGG AAGG	GPRC5D	ENSG00000111291.9	transcript	ENST00000228887.6	protein_coding		4317		chr12	TogoVar
GPSM2_chr1_108871985_108939545	108908728	A A	AACACACA others(31): Show AACACACACACACACACACACACACACACACACACACAC	intron_variant intron_variant	MODIFIER	HG02717.hp2 HG02717.hp2	a0006 a0006	a0006c0008 a0006c0008	a0006c0008t0044 a0006c0008t0044	a0006c0008t0044g0017 a0006c0008t0044g0017	1	260	0.0039	38	c.119 others(57): Show c.1192+4484_1192+4485insACACACACACACACACACACACACAC ACACACACACAC	GPSM2	ENSG00000121957.15	transcript	ENST00000264126.9	protein_coding	10/14		INFO_REALIGN_3_PRIME	chr1	TogoVar
GRAMD1B_chr11_123425269_123632767	123467821	C C	CTTTTCTT others(31): Show CTTTTCTTTTCCCTCCCTCCCTCCCTTCCTTCCTTCCTT	intron_variant intron_variant	MODIFIER	HG01106.hp2 HG01106.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0163 a0001c0001t0001g0163	1	282	0.0036	38	c.375 others(57): Show c.375-12995_375-12994insTTTTCTTTTCCCTCCCTCCCTCCCTT CCTTCCTTCCTT	GRAMD1B	ENSG00000023171.20	transcript	ENST00000635736.2	protein_coding	1/19			chr11	TogoVar
GRAMD1B_chr11_123425269_123632767	123467821	C C	CTTTTCTT others(31): Show CTTTTCTTTTCCCTCCCTCCCTTCCTTCCTTCCTTCCTT	intron_variant intron_variant	MODIFIER	HG01167.hp2 HG01169.hp1 HG01167.hp2 HG01169.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0011 a0001c0001t0011	a0001c0001t0011g0258 a0001c0001t0011g0259 a0001c0001t0011g0258 a0001c0001t0011g0259	2	282	0.0071	38	c.375 others(57): Show c.375-12995_375-12994insTTTTCTTTTCCCTCCCTCCCTTCCTT CCTTCCTTCCTT	GRAMD1B	ENSG00000023171.20	transcript	ENST00000635736.2	protein_coding	1/19			chr11	TogoVar
GRAMD1B_chr11_123425269_123632767	123469766	T T	TCCTTCCT others(31): Show TCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCC	intron_variant intron_variant	MODIFIER	NA18954.hp2 NA18954.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0152 a0001c0001t0002g0152	1	282	0.0036	38	c.375 others(57): Show c.375-11050_375-11049insCCTTCCTTCCTTCCTTCCTTCCTTCC TTCCTTCCTTCC	GRAMD1B	ENSG00000023171.20	transcript	ENST00000635736.2	protein_coding	1/19			chr11	TogoVar
GRAMD1B_chr11_123425269_123632767	123548325	T T	TATATATA others(31): Show TATATATATATATACACACACACACACACACACACACAC	intron_variant intron_variant	MODIFIER	HG02630.hp2 HG02630.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0229 a0001c0001t0003g0229	1	282	0.0036	38	c.453 others(57): Show c.453-29041_453-29040insTATATATATATACACACACACACACA CACACACACACA	GRAMD1B	ENSG00000023171.20	transcript	ENST00000635736.2	protein_coding	2/19		INFO_REALIGN_3_PRIME	chr11	TogoVar
GRAMD1B_chr11_123425269_123632767	123589614	T T	TTATATAT others(31): Show TTATATATATATATATATATATATATATATATATATATA	intron_variant intron_variant	MODIFIER	HG02486.hp1 HG02486.hp1	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0036 a0001c0003t0036	a0001c0003t0036g0252 a0001c0003t0036g0252	1	282	0.0036	38	c.685 others(55): Show c.685-4445_685-4444insATATATATATATATATATATATATATAT ATATATATAT	GRAMD1B	ENSG00000023171.20	transcript	ENST00000635736.2	protein_coding	4/19		INFO_REALIGN_3_PRIME	chr11	TogoVar

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