Joint Open Genome and Omics Platform (JoGo)

Search by Variant

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Chr

Chromosome name (e.g., chr11).

Snpeff genename

Exact SnpEff gene name.

Sampleids

Target sampleid (e.g. HG02615).

Snpeff haplotype class

Haplotype-annotation class (e.g., ahapid, ahapid+chapid).

Snpeff annotation impact

Exact impact level (e.g., HIGH, MODERATE, LOW).

Snpeff annotation impact detail

Keyword match in SnpEff annotation.

Hapid

One or more haplotype IDs (comma-separated; e.g., a0001, a01, a0001c0001, a01c02, a1c2, a0001c0001t0005, a0001c0001t0005g0018).

Samplehapid

Sample haplotype IDs to include (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

No_hapid

Haplotype IDs to exclude (comma-separated; e.g., a0001, a0002, a0001c0001, a0001c0001t0005, a1, a01).

No_samplehapid

Sample haplotype IDs to exclude (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

Start

Start position (GRCh38).

End

End position (GRCh38).

Minac

Minimum alternate allele count (≥).

Maxac

Maximum alternate allele count (≤).

Minlen

Minimum variant length (≥).

Maxlen

Maximum variant length (≤).

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regionname	pos	ref	alt	annotation	impact	samples	ahapids	achapids	acthapids	actghapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	external
GRAMD1B_chr11_123425269_123632767	123621923	C C	CCTTCCTT others(31): Show CCTTCCTTCCTTTCTCTCTCTTTCTTTCTTTTCTTTCTT	intron_variant intron_variant	MODIFIER	NA18952.hp1 NA18952.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0177 a0001c0001t0002g0177	1	282	0.0036	38	c.254 others(55): Show c.2545-572_2545-571insTCTCTCTCTTTCTTTCTTTTCTTTCTTC TTCCTTCCTT	GRAMD1B	ENSG00000023171.20	transcript	ENST00000635736.2	protein_coding	19/19		INFO_REALIGN_3_PRIME	chr11	TogoVar
GREB1_chr2_11529045_11647788	11587741	A A	ACACACAC others(31): Show ACACACACACACACACACACACACACACACACGCGCGCG	intron_variant intron_variant	MODIFIER	NA18970.hp1 NA18970.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0030 a0001c0001t0030	a0001c0001t0030g0087 a0001c0001t0030g0087	1	308	0.0033	38	c.116 others(57): Show c.1160-1004_1160-1003insACACACACACACACACACACACACAC ACACGCGCGCGC	GREB1	ENSG00000196208.14	transcript	ENST00000381486.7	protein_coding	9/32		INFO_REALIGN_3_PRIME	chr2	TogoVar
GREB1_chr2_11529045_11647788	11607592	A A	ATACATAT others(31): Show ATACATATAGATACATATATACATATATACACATATATG	intron_variant intron_variant	MODIFIER	HG00639.hp2 HG02647.hp1 HG02723.hp1 others(9): Show HG00639.hp2 HG02647.hp1 HG02723.hp1 HG02723.hp2 HG02896.hp1 HG02897.hp1 HG02976.hp2 HG03041.hp1 HG03098.hp1 HG03471.hp2 NA19240.hp1 NA20300.hp2	a0008 a0011 a0016 others(2): Show a0008 a0011 a0016 a0033 a0034	a0008c0006 a0011c0008 a0016c0021 others(2): Show a0008c0006 a0011c0008 a0016c0021 a0033c0047 a0034c0046	a0008c0006t0012 a0008c0006t0017 a0008c0006t0019 others(6): Show a0008c0006t0012 a0008c0006t0017 a0008c0006t0019 a0008c0006t0024 a0011c0008t0012 a0016c0021t0001 a0016c0021t0017 a0033c0047t0031 a0034c0046t0012	a0008c0006t0012g0112 a0008c0006t0017g0015 a0008c0006t0017g0259 others(9): Show a0008c0006t0012g0112 a0008c0006t0017g0015 a0008c0006t0017g0259 a0008c0006t0019g0076 a0008c0006t0024g0143 a0011c0008t0012g0093 a0011c0008t0012g0094 a0016c0021t0001g0137 a0016c0021t0017g0092 a0016c0021t0017g0099 a0033c0047t0031g0107 a0034c0046t0012g0097	12	308	0.0390	38	c.266 others(57): Show c.2667-3096_2667-3095insTACATATAGATACATATATACATATA TACACATATATG	GREB1	ENSG00000196208.14	transcript	ENST00000381486.7	protein_coding	17/32			chr2	TogoVar
GRHL1_chr2_9946693_10007277	9998582	G G	GTGTACAC others(31): Show GTGTACACATATATATACATATATGTGTACACATATATA	intron_variant intron_variant	MODIFIER	HG02970.hp2 HG02970.hp2	a0004 a0004	a0004c0004 a0004c0004	a0004c0004t0002 a0004c0004t0002	a0004c0004t0002g0035 a0004c0004t0002g0035	1	418	0.0024	38	c.167 others(55): Show c.1678-382_1678-381insGTACACATATATATACATATATGTGTAC ACATATATAT	GRHL1	ENSG00000134317.18	transcript	ENST00000324907.14	protein_coding	14/15		INFO_REALIGN_3_PRIME	chr2	TogoVar
GRHL1_chr2_9946693_10007277	9998587	T T	TATATATG others(31): Show TATATATGTACACATATATATATACATATATATGTACAC	intron_variant intron_variant	MODIFIER	HG02622.hp2 HG02622.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0323 a0001c0001t0001g0323	1	418	0.0024	38	c.167 others(55): Show c.1678-372_1678-335dupTGTACACATATATATATACATATATATG TACACATATA	GRHL1	ENSG00000134317.18	transcript	ENST00000324907.14	protein_coding	14/15		INFO_REALIGN_3_PRIME	chr2	TogoVar
GRHL2_chr8_101487439_101674726	101522738	C C	CATATACA others(31): Show CATATACATATACATATACATATACATATACATATACAT	intron_variant intron_variant	MODIFIER	NA21309.hp2 NA21309.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0008 a0001c0001t0008	a0001c0001t0008g0030 a0001c0001t0008g0030	1	306	0.0033	38	c.21- others(55): Show c.21-20498_21-20497insCATATACATATACATATACATATACATA TACATATATA	GRHL2	ENSG00000083307.12	transcript	ENST00000646743.1	protein_coding	1/15		INFO_REALIGN_3_PRIME	chr8	TogoVar
GRIA1_chr5_153485670_153818869	153566304	C C	CTTTTTTT others(31): Show CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG02280.hp1 HG03098.hp2 HG03195.hp2 others(1): Show HG02280.hp1 HG03098.hp2 HG03195.hp2 NA18522.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0001 a0001c0001t0002	a0001c0001t0001g0090 a0001c0001t0001g0094 a0001c0001t0001g0119 others(1): Show a0001c0001t0001g0090 a0001c0001t0001g0094 a0001c0001t0001g0119 a0001c0001t0002g0085	4	194	0.0206	38	c.220 others(57): Show c.220+72255_220+72256insTTTTTTTTTTTTTTTTTTTTTTTTTT TTTTTTTTTTTT	GRIA1	ENSG00000155511.19	transcript	ENST00000285900.10	protein_coding	2/15		INFO_REALIGN_3_PRIME	chr5	TogoVar
GRIA1_chr5_153485670_153818869	153775817	T T	TGCGGATT others(31): Show TGCGGATTCTTCCACCATTGGAAGAATTGTGGAAGAATG	intron_variant intron_variant	MODIFIER	HG01993.hp1 HG02280.hp2 NA18522.hp2 HG01993.hp1 HG02280.hp2 NA18522.hp2	a0001 a0001	a0001c0001 a0001c0005 a0001c0001 a0001c0005	a0001c0001t0005 a0001c0005t0005 a0001c0001t0005 a0001c0005t0005	a0001c0001t0005g0193 a0001c0005t0005g0020 a0001c0005t0005g0050 a0001c0001t0005g0193 a0001c0005t0005g0020 a0001c0005t0005g0050	3	194	0.0155	38	c.227 others(57): Show c.2270+5403_2270+5404insCGGATTCTTCCACCATTGGAAGAATT GTGGAAGAATGG	GRIA1	ENSG00000155511.19	transcript	ENST00000285900.10	protein_coding	13/15		INFO_REALIGN_3_PRIME	chr5	TogoVar
GRIA2_chr4_157215728_157371075	157277881	T T	TGTATATA others(31): Show TGTATATATGTATATATATGTATATATGTATATATATAC	intron_variant intron_variant	MODIFIER	NA18906.hp2 NA18906.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0204 a0001c0001t0001g0204	1	216	0.0046	38	c.230 others(57): Show c.230-25653_230-25652insGTATATATGTATATATATACGTATAT ATGTATATATAT	GRIA2	ENSG00000120251.22	transcript	ENST00000264426.14	protein_coding	2/15		INFO_REALIGN_3_PRIME	chr4	TogoVar
GRIA2_chr4_157215728_157371075	157355875	T T	TTATATAT others(31): Show TTATATATAAATATATATATTAATATATTTATATATAAA	intron_variant intron_variant	MODIFIER	HG00733.hp2 HG00738.hp2 HG01243.hp1 others(1): Show HG00733.hp2 HG00738.hp2 HG01243.hp1 HG02683.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0005 a0001c0001t0001g0006 a0001c0001t0001g0025 others(1): Show a0001c0001t0001g0005 a0001c0001t0001g0006 a0001c0001t0001g0025 a0001c0001t0001g0029	4	216	0.0185	38	c.204 others(57): Show c.2044-4013_2044-4012insAATATATATATTAATATATTTATATA TAAATATATATA	GRIA2	ENSG00000120251.22	transcript	ENST00000264426.14	protein_coding	12/15		INFO_REALIGN_3_PRIME	chr4	TogoVar
GRIA2_chr4_157215728_157371075	157355875	T T	TTATATAT others(31): Show TTATATATAAATATATATATTAATATATTTATATATATA	intron_variant intron_variant	MODIFIER	HG01891.hp1 HG01891.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0022 a0001c0001t0001g0022	1	216	0.0046	38	c.204 others(57): Show c.2044-4013_2044-4012insAATATATATATTAATATATTTATATA TATATATATATA	GRIA2	ENSG00000120251.22	transcript	ENST00000264426.14	protein_coding	12/15		INFO_REALIGN_3_PRIME	chr4	TogoVar
GRIA3_chrX_123179278_123495915	123480806	T T	TTGTTTTT others(31): Show TTGTTTTTTTTATTTTCTATTAAATTTTTATAGTTTAAC	intron_variant intron_variant	MODIFIER	NA19000.hp1 NA19000.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0101 a0001c0002t0001g0101	1	207	0.0048	38	c.243 others(55): Show c.2439+630_2439+631insGTTTTTTTTATTTTCTATTAAATTTTTA TAGTTTAACT	GRIA3	ENSG00000125675.20	transcript	ENST00000620443.2	protein_coding	14/15		INFO_REALIGN_3_PRIME	chrX	TogoVar
GRIA4_chr11_105605073_105987090	105911775	A A	AATACATA others(31): Show AATACATATATATATATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG03490.hp2 HG03490.hp2	a0003 a0003	a0003c0004 a0003c0004	a0003c0004t0047 a0003c0004t0047	a0003c0004t0047g0097 a0003c0004t0047g0097	1	184	0.0054	38	c.126 others(57): Show c.1269+1233_1269+1234insCATATATATATATATATATATATATA TATATATATATA	GRIA4	ENSG00000152578.15	transcript	ENST00000282499.10	protein_coding	10/16		INFO_REALIGN_3_PRIME	chr11	TogoVar
GRID1_chr10_85594552_86371795	85599802	A A	AAAAAAAA others(31): Show AAAAAAAAAAAAAAAAAAAATATATATATATATATATAT	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	NA18981.hp2 NA18981.hp2	a0001 a0001	a0001c0010 a0001c0010	a0001c0010t0030 a0001c0010t0030	a0001c0010t0030g0075 a0001c0010t0030g0075	1	96	0.0104	38	c.24 others(49): Show c.2470_*2471insATATATATATATATATATATTTTTTTTTTTTTTT TTTT	GRID1	ENSG00000182771.19	transcript	ENST00000327946.12	protein_coding	16/16	2470		chr10	TogoVar
GRID1_chr10_85594552_86371795	85599802	A A	AAAAAAAA others(31): Show AAAAAAAATATATATATATATATATATATATATATATAT	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	NA21309.hp2 NA21309.hp2	a0001 a0001	a0001c0009 a0001c0009	a0001c0009t0052 a0001c0009t0052	a0001c0009t0052g0030 a0001c0009t0052g0030	1	96	0.0104	38	c.24 others(49): Show c.2470_*2471insATATATATATATATATATATATATATATATATTT TTTT	GRID1	ENSG00000182771.19	transcript	ENST00000327946.12	protein_coding	16/16	2470		chr10	TogoVar
GRID1_chr10_85594552_86371795	85599802	A A	AAAATATA others(31): Show AAAATATATATATATATATATATATATATATATATATAT	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG02896.hp2 HG02897.hp2 HG02896.hp2 HG02897.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0014 a0001c0001t0014	a0001c0001t0014g0049 a0001c0001t0014g0050 a0001c0001t0014g0049 a0001c0001t0014g0050	2	96	0.0208	38	c.24 others(49): Show c.2470_*2471insATATATATATATATATATATATATATATATATAT ATTT	GRID1	ENSG00000182771.19	transcript	ENST00000327946.12	protein_coding	16/16	2470		chr10	TogoVar
GRID2_chr4_92298966_93779566	92460032	C C	CTATATAT others(31): Show CTATATATATATATATATATATATATATATATATATATA	intron_variant intron_variant	MODIFIER	HG01496.hp1 HG01496.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0004 a0001c0002t0001g0004	1	34	0.0294	38	c.89- others(57): Show c.89-130077_89-130076insTATATATATATATATATATATATATA TATATATATATA	GRID2	ENSG00000152208.13	transcript	ENST00000282020.9	protein_coding	1/15		INFO_REALIGN_3_PRIME	chr4	TogoVar
GRID2_chr4_92298966_93779566	93398133	G G	GTGTGTGT others(31): Show GTGTGTGTGTGTGTATATATATATATATATATATATATA	intron_variant intron_variant	MODIFIER	HG03041.hp1 HG03041.hp1	a0003 a0003	a0003c0007 a0003c0007	a0003c0007t0005 a0003c0007t0005	a0003c0007t0005g0013 a0003c0007t0005g0013	1	34	0.0294	38	c.134 others(57): Show c.1347+2426_1347+2427insGTGTGTGTGTGTATATATATATATAT ATATATATATAT	GRID2	ENSG00000152208.13	transcript	ENST00000282020.9	protein_coding	9/15		INFO_REALIGN_3_PRIME	chr4	TogoVar
GRIK1_chr21_29531933_29944996	29734351	C C	CTTTTCTT others(31): Show CTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTT	intron_variant intron_variant	MODIFIER	HG01192.hp2 HG01952.hp1 HG01192.hp2 HG01952.hp1	a0001 a0001	a0001c0001 a0001c0003 a0001c0001 a0001c0003	a0001c0001t0001 a0001c0003t0001 a0001c0001t0001 a0001c0003t0001	a0001c0001t0001g0035 a0001c0003t0001g0018 a0001c0001t0001g0035 a0001c0003t0001g0018	2	162	0.0124	38	c.119 others(57): Show c.119-40326_119-40289dupAAAGAAAAGAAAAGAAAAGAAAAGAA AAGAAAAGAAAA	GRIK1	ENSG00000171189.18	transcript	ENST00000327783.9	protein_coding	1/17			chr21	TogoVar
GRIK1_chr21_29531933_29944996	29848779	A A	ATATATAT others(31): Show ATATATATATATATATATATATATATATTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG02451.hp1 HG02451.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0012 a0001c0001t0001g0012	1	162	0.0062	38	c.118 others(57): Show c.118+90603_118+90604insAAAAAAAAAAAATATATATATATATA TATATATATATA	GRIK1	ENSG00000171189.18	transcript	ENST00000327783.9	protein_coding	1/17			chr21	TogoVar
GRIK1_chr21_29531933_29944996	29848779	A A	ATATATAT others(31): Show ATATATATATATATATATTTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG03209.hp2 HG03209.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0004	a0001c0001t0004g0002 a0001c0001t0004g0002	1	162	0.0062	38	c.118 others(57): Show c.118+90603_118+90604insAAAAAAAAAAAAAAAAAAAAAATATA TATATATATATA	GRIK1	ENSG00000171189.18	transcript	ENST00000327783.9	protein_coding	1/17			chr21	TogoVar
GRIK1_chr21_29531933_29944996	29888197	C C	CTTTCTTT others(31): Show CTTTCTTTCTTTCTTCCTTCCTTCCTTCCTTTCTTTCTT	intron_variant intron_variant	MODIFIER	HG03486.hp2 HG03486.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0148 a0001c0001t0001g0148	1	162	0.0062	38	c.118 others(57): Show c.118+51185_118+51186insAAGAAAGAAAGGAAGGAAGGAAGGAA GAAAGAAAGAAA	GRIK1	ENSG00000171189.18	transcript	ENST00000327783.9	protein_coding	1/17			chr21	TogoVar
GRIK1_chr21_29531933_29944996	29888197	C C	CTTTCTTT others(31): Show CTTTCTTTCTTTCTTTCTTTCTTCCTTTCTTTCTTTCTT	intron_variant intron_variant	MODIFIER	HG02965.hp1 HG02976.hp2 HG02965.hp1 HG02976.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0004 a0001c0001t0001g0009 a0001c0001t0001g0004 a0001c0001t0001g0009	2	162	0.0124	38	c.118 others(57): Show c.118+51185_118+51186insAAGAAAGAAAGAAAGGAAGAAAGAAA GAAAGAAAGAAA	GRIK1	ENSG00000171189.18	transcript	ENST00000327783.9	protein_coding	1/17			chr21	TogoVar
GRIK1_chr21_29531933_29944996	29888197	C C	CTTTCTTT others(31): Show CTTTCTTTCTTTCTTTCTTTCTTTCTTCCTTTCTTTCTT	intron_variant intron_variant	MODIFIER	HG02976.hp1 HG02976.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0040 a0001c0001t0001g0040	1	162	0.0062	38	c.118 others(57): Show c.118+51185_118+51186insAAGAAAGAAAGGAAGAAAGAAAGAAA GAAAGAAAGAAA	GRIK1	ENSG00000171189.18	transcript	ENST00000327783.9	protein_coding	1/17			chr21	TogoVar
GRIK1_chr21_29531933_29944996	29888197	C C	CTTTCTTT others(31): Show CTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTCCTTTCTT	intron_variant intron_variant	MODIFIER	HG02132.hp1 HG02132.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0096 a0001c0002t0001g0096	1	162	0.0062	38	c.118 others(57): Show c.118+51185_118+51186insAAGAAAGGAAGAAAGAAAGAAAGAAA GAAAGAAAGAAA	GRIK1	ENSG00000171189.18	transcript	ENST00000327783.9	protein_coding	1/17			chr21	TogoVar
GRIK1_chr21_29531933_29944996	29888197	C C	CTTTCTTT others(31): Show CTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTCCTT	intron_variant intron_variant	MODIFIER	NA18946.hp2 NA18946.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0159 a0001c0001t0003g0159	1	162	0.0062	38	c.118 others(57): Show c.118+51185_118+51186insAAGGAAGAAAGAAAGAAAGAAAGAAA GAAAGAAAGAAA	GRIK1	ENSG00000171189.18	transcript	ENST00000327783.9	protein_coding	1/17			chr21	TogoVar
GRIK1_chr21_29531933_29944996	29888198	T T	TTTCTTTC others(31): Show TTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTC	intron_variant intron_variant	MODIFIER	HG00733.hp2 HG01081.hp1 HG01952.hp1 others(2): Show HG00733.hp2 HG01081.hp1 HG01952.hp1 HG02055.hp2 NA18987.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0003 a0001c0001 a0001c0002 a0001c0003	a0001c0001t0001 a0001c0002t0001 a0001c0003t0001 others(1): Show a0001c0001t0001 a0001c0002t0001 a0001c0003t0001 a0001c0003t0002	a0001c0001t0001g0025 a0001c0002t0001g0095 a0001c0002t0001g0115 others(2): Show a0001c0001t0001g0025 a0001c0002t0001g0095 a0001c0002t0001g0115 a0001c0003t0001g0018 a0001c0003t0002g0037	5	162	0.0309	38	c.118 others(57): Show c.118+51184_118+51185insGAAGAAAGAAAGAAAGAAAGAAAGAA AGAAAGAAAGAA	GRIK1	ENSG00000171189.18	transcript	ENST00000327783.9	protein_coding	1/17			chr21	TogoVar
GRIN2B_chr12_13532337_13986602	13605551	T T	TCTCTCTC others(31): Show TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGACACACA	intron_variant intron_variant	MODIFIER	HG00639.hp1 HG01256.hp1 HG00639.hp1 HG01256.hp1	a0001 a0001	a0001c0001 a0001c0010 a0001c0001 a0001c0010	a0001c0001t0074 a0001c0010t0006 a0001c0001t0074 a0001c0010t0006	a0001c0001t0074g0065 a0001c0010t0006g0044 a0001c0001t0074g0065 a0001c0010t0006g0044	2	194	0.0103	38	c.201 others(57): Show c.2010+3051_2010+3052insTGTGTGTCAGAGAGAGAGAGAGAGAG AGAGAGAGAGAG	GRIN2B	ENSG00000273079.7	transcript	ENST00000609686.4	protein_coding	10/13			chr12	TogoVar
GRIN2B_chr12_13532337_13986602	13605551	T T	TCTCTCTC others(31): Show TCTCTCTCTCTCTCTCTCTCTCTCTCTGACACACACACA	intron_variant intron_variant	MODIFIER	HG04228.hp2 HG04228.hp2	a0001 a0001	a0001c0006 a0001c0006	a0001c0006t0139 a0001c0006t0139	a0001c0006t0139g0035 a0001c0006t0139g0035	1	194	0.0052	38	c.201 others(57): Show c.2010+3051_2010+3052insTGTGTGTGTGTCAGAGAGAGAGAGAG AGAGAGAGAGAG	GRIN2B	ENSG00000273079.7	transcript	ENST00000609686.4	protein_coding	10/13			chr12	TogoVar
GRK4_chr4_2958571_3045760	3001089	A A	ATATATAT others(31): Show ATATATATATATATATATATATATGTGTGTGTGTGTGTG	intron_variant intron_variant	MODIFIER	NA21309.hp1 NA21309.hp1	a0008 a0008	a0008c0008 a0008c0008	a0008c0008t0004 a0008c0008t0004	a0008c0008t0004g0009 a0008c0008t0004g0009	1	268	0.0037	38	c.340 others(55): Show c.340-3141_340-3140insATATATATATATATATATATATGTGTGT GTGTGTGTGT	GRK4	ENSG00000125388.20	transcript	ENST00000398052.9	protein_coding	4/15		INFO_REALIGN_3_PRIME	chr4	TogoVar
GRK5_chr10_119202571_119464745	119360586	A A	ATGAGTGG others(31): Show ATGAGTGGGAGGAGCCTGTGTGAGAGGCAGGAGCCTGTG	intron_variant intron_variant	MODIFIER	NA18969.hp2 NA18969.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0053 a0001c0001t0053	a0001c0001t0053g0117 a0001c0001t0053g0117	1	202	0.0050	38	c.149 others(57): Show c.149-20219_149-20182dupGGAGCCTGTGTGAGAGGCAGGAGCCT GTGTGAGTGGGA	GRK5	ENSG00000198873.12	transcript	ENST00000392870.3	protein_coding	2/15		INFO_REALIGN_3_PRIME	chr10	TogoVar
GRM3_chr7_86638909_86869879	86698520	T T	TTATATAT others(31): Show TTATATATATATATATATATATATATATATATATATATA	intron_variant intron_variant	MODIFIER	HG02257.hp1 HG03195.hp1 HG02257.hp1 HG03195.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0001 a0001c0001t0002	a0001c0001t0001g0134 a0001c0001t0002g0090 a0001c0001t0001g0134 a0001c0001t0002g0090	2	216	0.0093	38	c.-14 others(59): Show c.-141+53666_-141+53667insTATATATATATATATATATATATA TATATATATATATA	GRM3	ENSG00000198822.11	transcript	ENST00000361669.7	protein_coding	1/5		INFO_REALIGN_3_PRIME	chr7	TogoVar
GRM5_chr11_88499642_89070982	88919238	C C	CTATATAT others(31): Show CTATATATATATATATATATATATATATATATATATATA	intron_variant intron_variant	MODIFIER	HG01074.hp2 HG02145.hp2 HG02735.hp1 others(3): Show HG01074.hp2 HG02145.hp2 HG02735.hp1 NA18956.hp1 NA18966.hp2 NA18989.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0004 a0001c0001t0002 a0001c0001t0004	a0001c0001t0002g0042 a0001c0001t0002g0063 a0001c0001t0002g0076 others(3): Show a0001c0001t0002g0042 a0001c0001t0002g0063 a0001c0001t0002g0076 a0001c0001t0002g0115 a0001c0001t0002g0143 a0001c0001t0004g0002	6	184	0.0326	38	c.662 others(57): Show c.662-69084_662-69083insTATATATATATATATATATATATATA TATATATATATA	GRM5	ENSG00000168959.15	transcript	ENST00000305447.5	protein_coding	2/9			chr11	TogoVar
GRM7_chr3_6856115_7746533	7064469	T T	TATATATA others(31): Show TATATATATATATATATATATATACACACACACATATAC	intron_variant intron_variant	MODIFIER	HG02258.hp2 HG02559.hp2 HG02895.hp2 others(2): Show HG02258.hp2 HG02559.hp2 HG02895.hp2 HG03486.hp1 HG04199.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0003 others(1): Show a0001c0001 a0001c0002 a0001c0003 a0001c0015	a0001c0001t0001 a0001c0002t0002 a0001c0003t0001 others(1): Show a0001c0001t0001 a0001c0002t0002 a0001c0003t0001 a0001c0015t0009	a0001c0001t0001g0070 a0001c0002t0002g0023 a0001c0003t0001g0037 others(2): Show a0001c0001t0001g0070 a0001c0002t0002g0023 a0001c0003t0001g0037 a0001c0003t0001g0068 a0001c0015t0009g0045	5	80	0.0625	38	c.520 others(57): Show c.520-81972_520-81971insTATATATATATACACACACACATATA CATATATATATA	GRM7	ENSG00000196277.17	transcript	ENST00000357716.9	protein_coding	1/9		INFO_REALIGN_3_PRIME	chr3	TogoVar
GRM7_chr3_6856115_7746533	7064479	T T	TATATATA others(31): Show TATATATATATATATATATATATATATATACACACACAC	intron_variant intron_variant	MODIFIER	HG00738.hp2 HG00738.hp2	a0002 a0002	a0002c0007 a0002c0007	a0002c0007t0001 a0002c0007t0001	a0002c0007t0001g0050 a0002c0007t0001g0050	1	80	0.0125	38	c.520 others(57): Show c.520-81972_520-81971insTATATATATATATATATATATATATA TACACACACACA	GRM7	ENSG00000196277.17	transcript	ENST00000357716.9	protein_coding	1/9		INFO_REALIGN_3_PRIME	chr3	TogoVar
GRM8_chr7_126433598_127257941	126788409	C C	CAAAAAAA others(31): Show CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG02615.hp1 HG02615.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0076 a0001c0001t0001g0076	1	108	0.0093	38	c.115 others(59): Show c.1157-18345_1157-18344insTTTTTTTTTTTTTTTTTTTTTTTT TTTTTTTTTTTTTT	GRM8	ENSG00000179603.19	transcript	ENST00000339582.7	protein_coding	6/10			chr7	TogoVar
GRP_chr18_59215158_59235771	59227008	T T	TTTCTTTC others(31): Show TTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTC	intron_variant intron_variant	MODIFIER	HG00140.hp2 HG00140.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0120 a0001c0001t0001g0120	1	408	0.0025	38	c.382 others(55): Show c.382+1274_382+1275insTTCTTTCTTTCTTTCTTTCTTTCTTTCT TTCTTTCTTC	GRP	ENSG00000134443.10	transcript	ENST00000256857.7	protein_coding	2/2			chr18	TogoVar
GRP_chr18_59215158_59235771	59227016	T T	TCTTTCTT others(31): Show TCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTCTCCTTC	intron_variant intron_variant	MODIFIER	NA19058.hp2 NA19058.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0150 a0001c0001t0001g0150	1	408	0.0025	38	c.382 others(55): Show c.382+1313_382+1314insCTCCTTCCTTTCTTTCTTTCTTTCTTTC TTTCTTTCTT	GRP	ENSG00000134443.10	transcript	ENST00000256857.7	protein_coding	2/2		INFO_REALIGN_3_PRIME	chr18	TogoVar
GRP_chr18_59215158_59235771	59233832	C C	CTATATCA others(31): Show CTATATCATATATTATATAACATATGATATATTATATAA	downstream_gene_variant downstream_gene_variant	MODIFIER	NA19080.hp2 NA19080.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0109 a0001c0001t0001g0109	1	408	0.0025	38	c.33 others(49): Show c.3364_*3365insTATATCATATATTATATAACATATGATATATTAT ATAA	GRP	ENSG00000134443.10	transcript	ENST00000256857.7	protein_coding		3062		chr18	TogoVar
GSG1L2_chr17_9795608_9827079	9816872	G G	GTGTGTGT others(31): Show GTGTGTGTATCTGTGTGTGTGTATCTGTGTGTGTGTCTC	intron_variant intron_variant	MODIFIER	HG02647.hp2 HG02976.hp1 HG03579.hp2 HG02647.hp2 HG02976.hp1 HG03579.hp2	a0001 a0001	a0001c0003 a0001c0004 a0001c0003 a0001c0004	a0001c0003t0019 a0001c0004t0001 a0001c0004t0002 a0001c0003t0019 a0001c0004t0001 a0001c0004t0002	a0001c0003t0019g0147 a0001c0004t0001g0139 a0001c0004t0002g0150 a0001c0003t0019g0147 a0001c0004t0001g0139 a0001c0004t0002g0150	3	474	0.0063	38	c.310 others(55): Show c.310+4889_310+4890insGAGACACACACACAGATACACACACACA GATACACACA	GSG1L2	ENSG00000214978.8	transcript	ENST00000399363.5	protein_coding	1/4			chr17	TogoVar
GSG1L2_chr17_9795608_9827079	9816916	G G	GTGTGTAT others(31): Show GTGTGTATCTGTGTGTGTGTGTATCTGTGTGTGTGTATC	intron_variant intron_variant	MODIFIER	HG01256.hp1 HG01258.hp1 HG02922.hp2 HG01256.hp1 HG01258.hp1 HG02922.hp2	a0001 a0001	a0001c0003 a0001c0004 a0001c0003 a0001c0004	a0001c0003t0004 a0001c0004t0001 a0001c0003t0004 a0001c0004t0001	a0001c0003t0004g0138 a0001c0004t0001g0009 a0001c0003t0004g0138 a0001c0004t0001g0009	3	474	0.0063	38	c.310 others(55): Show c.310+4845_310+4846insGATACACACACACAGATACACACACACA CAGATACACA	GSG1L2	ENSG00000214978.8	transcript	ENST00000399363.5	protein_coding	1/4			chr17	TogoVar
GSG1L_chr16_27782528_28068714	27869455	T T	TTCTCTCT others(31): Show TTCTCTCTCTCTGTCTCCCTCCATCTCTCTCTCTCCTTC	intron_variant intron_variant	MODIFIER	NA19082.hp2 NA19082.hp2	a0002 a0002	a0002c0003 a0002c0003	a0002c0003t0003 a0002c0003t0003	a0002c0003t0003g0236 a0002c0003t0003g0236	1	240	0.0042	38	c.550 others(57): Show c.550+14993_550+15030dupGAAGGAGAGAGAGAGATGGAGGGAGA CAGAGAGAGAGA	GSG1L	ENSG00000169181.13	transcript	ENST00000447459.7	protein_coding	3/6			chr16	TogoVar
GSG1L_chr16_27782528_28068714	27911266	G G	GCTCGCTC others(31): Show GCTCGCTCTCTCTCTCTCTCTCTCGCTCTCTCTCTCTCT	intron_variant intron_variant	MODIFIER	HG01884.hp1 HG01884.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0027 a0001c0001t0002g0027	1	240	0.0042	38	c.398 others(57): Show c.398-26629_398-26628insAGAGAGAGAGAGAGCGAGAGAGAGAG AGAGAGAGCGAG	GSG1L	ENSG00000169181.13	transcript	ENST00000447459.7	protein_coding	2/6			chr16	TogoVar
GSG1L_chr16_27782528_28068714	27979661	A A	AAGAAAGA others(31): Show AAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	intron_variant intron_variant	MODIFIER	HG02602.hp1 HG02717.hp1 HG02602.hp1 HG02717.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0002 a0001c0002t0047 a0001c0001t0002 a0001c0002t0047	a0001c0001t0002g0129 a0001c0002t0047g0160 a0001c0001t0002g0129 a0001c0002t0047g0160	2	240	0.0083	38	c.350 others(57): Show c.350-16459_350-16458insCTTTCTTTCTTTCTTTCTTTCTTTCT TTCTTTCTTTCT	GSG1L	ENSG00000169181.13	transcript	ENST00000447459.7	protein_coding	1/6			chr16	TogoVar
GSS_chr20_34923432_34960806	34950020	C C	CACACACA others(31): Show CACACACACACACACACACACACACACACACACACACAT	intron_variant intron_variant	MODIFIER	HG04204.hp2 HG04204.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0055 a0001c0001t0001g0055	1	352	0.0028	38	c.129 others(55): Show c.129+1703_129+1704insATGTGTGTGTGTGTGTGTGTGTGTGTGT GTGTGTGTGT	GSS	ENSG00000100983.12	transcript	ENST00000651619.1	protein_coding	2/12			chr20	TogoVar
GSTA4_chr6_52972953_53000284	52987223	C C	CCCGCCTT others(31): Show CCCGCCTTCCGTTCCCCTCCCTCTTCCTCCCGTTTCCCT	intron_variant intron_variant	MODIFIER	HG00408.hp1 HG00408.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0005 a0001c0001t0005	a0001c0001t0005g0070 a0001c0001t0005g0070	1	324	0.0031	38	c.139 others(53): Show c.139+133_139+134insAGGGAAACGGGAGGAAGAGGGAGGGGAACG GAAGGCGG	GSTA4	ENSG00000170899.11	transcript	ENST00000370963.9	protein_coding	3/6			chr6	TogoVar
GSTP1_chr11_67578812_67591653	67583377	A A	AATAAAAT others(31): Show AATAAAATAATAAAATAAAATAAAATAAAAAAATAAAAT	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01496.hp1 NA19088.hp2 HG01496.hp1 NA19088.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0002 a0002c0002t0002	a0002c0002t0002g0003 a0002c0002t0002g0003	2	392	0.0051	38	c.-46 others(47): Show c.-467_-466insATAAAATAATAAAATAAAATAAAATAAAAAAATAAA AT	GSTP1	ENSG00000084207.18	transcript	ENST00000398606.10	protein_coding		434		chr11	TogoVar
GTDC1_chr2_143933068_144337512	144133247	A A	ATATATAT others(31): Show ATATATATTTATATTTATATATAAATATATATTTATATT	intron_variant intron_variant	MODIFIER	HG02559.hp2 HG02559.hp2	a0008 a0008	a0008c0011 a0008c0011	a0008c0011t0021 a0008c0011t0021	a0008c0011t0021g0077 a0008c0011t0021g0077	1	124	0.0081	38	c.521 others(55): Show c.521+8634_521+8635insAATATAAATATATATTTATATATAAATA TAAATATATA	GTDC1	ENSG00000121964.15	transcript	ENST00000682281.1	protein_coding	6/11			chr2	TogoVar
GTF2A1L_chr2_48612856_48684604	48615466	A A	AGGAGAGG others(31): Show AGGAGAGGGAGAGGGAGACGGGAGAGGGAGAGGGAGACG	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00140.hp2 HG00621.hp1 HG01070.hp2 others(42): Show HG00140.hp2 HG00621.hp1 HG01070.hp2 HG01071.hp2 HG01074.hp1 HG01109.hp1 HG01109.hp2 HG01261.hp2 HG01884.hp1 HG01891.hp1 HG01928.hp1 HG01978.hp1 HG01981.hp2 HG02015.hp2 HG02132.hp2 HG02559.hp1 HG02615.hp1 HG02698.hp2 HG02886.hp1 HG02895.hp2 HG02897.hp1 HG02976.hp1 HG03041.hp1 HG03239.hp2 HG03492.hp1 HG03540.hp1 HG03942.hp1 NA18942.hp2 NA18945.hp1 NA18950.hp1 NA18960.hp2 NA18962.hp2 NA18968.hp1 NA18969.hp1 NA18995.hp2 NA19000.hp1 NA19003.hp2 NA19009.hp2 NA19010.hp2 NA19063.hp1 NA19066.hp2 NA19075.hp1 NA19087.hp2 NA20129.hp1 NA20300.hp2	a0001 a0004 a0006 others(1): Show a0001 a0004 a0006 a0010	a0001c0001 a0001c0003 a0004c0008 others(2): Show a0001c0001 a0001c0003 a0004c0008 a0006c0010 a0010c0015	a0001c0001t0001 a0001c0003t0001 a0004c0008t0002 others(2): Show a0001c0001t0001 a0001c0003t0001 a0004c0008t0002 a0006c0010t0001 a0010c0015t0001	a0001c0001t0001g0008 a0001c0001t0001g0009 a0001c0001t0001g0017 others(40): Show a0001c0001t0001g0008 a0001c0001t0001g0009 a0001c0001t0001g0017 a0001c0001t0001g0099 a0001c0001t0001g0103 a0001c0001t0001g0105 a0001c0001t0001g0106 a0001c0001t0001g0138 a0001c0001t0001g0162 a0001c0001t0001g0163 a0001c0001t0001g0166 a0001c0001t0001g0169 a0001c0001t0001g0170 a0001c0001t0001g0183 a0001c0001t0001g0184 a0001c0001t0001g0185 a0001c0001t0001g0186 a0001c0001t0001g0238 a0001c0001t0001g0243 a0001c0001t0001g0245 a0001c0001t0001g0246 a0001c0001t0001g0247 a0001c0001t0001g0249 a0001c0001t0001g0251 a0001c0001t0001g0252 a0001c0001t0001g0253 a0001c0001t0001g0255 a0001c0001t0001g0266 a0001c0001t0001g0267 a0001c0001t0001g0290 a0001c0001t0001g0291 a0001c0001t0001g0292 a0001c0001t0001g0293 a0001c0001t0001g0294 a0001c0001t0001g0295 a0001c0001t0001g0296 a0001c0001t0001g0298 a0001c0001t0001g0299 a0001c0001t0001g0300 a0001c0003t0001g0061 a0004c0008t0002g0303 a0006c0010t0001g0297 a0010c0015t0001g0164	45	344	0.1308	38	c.-24 others(49): Show c.-2409_-2408insGGAGAGGGAGAGGGAGACGGGAGAGGGAGAGGGA GACG	GTF2A1L	ENSG00000242441.8	transcript	ENST00000403751.8	protein_coding		2389		chr2	TogoVar
GTF2F2_chr13_45115510_45289893	45191222	A A	AATATATA others(31): Show AATATATATATATATATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG03098.hp1 HG03098.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0026 a0001c0001t0002g0026	1	210	0.0048	38	c.305 others(57): Show c.305-16201_305-16200insTATATATATATATATATATATATATA TATATATATATA	GTF2F2	ENSG00000188342.13	transcript	ENST00000340473.8	protein_coding	4/7		INFO_REALIGN_3_PRIME	chr13	TogoVar

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