Joint Open Genome and Omics Platform (JoGo)

Search by Variant

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Chr

Chromosome name (e.g., chr11).

Snpeff genename

Exact SnpEff gene name.

Sampleids

Target sampleid (e.g. HG02615).

Snpeff haplotype class

Haplotype-annotation class (e.g., ahapid, ahapid+chapid).

Snpeff annotation impact

Exact impact level (e.g., HIGH, MODERATE, LOW).

Snpeff annotation impact detail

Keyword match in SnpEff annotation.

Hapid

One or more haplotype IDs (comma-separated; e.g., a0001, a01, a0001c0001, a01c02, a1c2, a0001c0001t0005, a0001c0001t0005g0018).

Samplehapid

Sample haplotype IDs to include (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

No_hapid

Haplotype IDs to exclude (comma-separated; e.g., a0001, a0002, a0001c0001, a0001c0001t0005, a1, a01).

No_samplehapid

Sample haplotype IDs to exclude (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

Start

Start position (GRCh38).

End

End position (GRCh38).

Minac

Minimum alternate allele count (≥).

Maxac

Maximum alternate allele count (≤).

Minlen

Minimum variant length (≥).

Maxlen

Maximum variant length (≤).

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regionname	pos	ref	alt	annotation	impact	samples	ahapids	achapids	acthapids	actghapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	external
IL16_chr15_81191879_81319058	81243163	A A	ATATATAC others(31): Show ATATATACATATATATATATATATATATATATATATTTT	intron_variant intron_variant	MODIFIER	HG04115.hp1 HG04115.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0003 a0001c0002t0003	a0001c0002t0003g0275 a0001c0002t0003g0275	1	342	0.0029	38	c.313 others(57): Show c.313-16608_313-16607insATATACATATATATATATATATATAT ATATATATTTTT	IL16	ENSG00000172349.19	transcript	ENST00000683961.1	protein_coding	2/18		INFO_REALIGN_3_PRIME	chr15	TogoVar
IL16_chr15_81191879_81319058	81243163	A A	ATATATAT others(31): Show ATATATATACATATATATATATATATATATATATATTTT	intron_variant intron_variant	MODIFIER	HG00597.hp1 HG00597.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0003 a0001c0002t0003	a0001c0002t0003g0278 a0001c0002t0003g0278	1	342	0.0029	38	c.313 others(57): Show c.313-16608_313-16607insATATATACATATATATATATATATAT ATATATATTTTT	IL16	ENSG00000172349.19	transcript	ENST00000683961.1	protein_coding	2/18		INFO_REALIGN_3_PRIME	chr15	TogoVar
IL16_chr15_81191879_81319058	81243163	A A	ATATATAT others(31): Show ATATATATATATATATATATATATATATATATATTTTTT	intron_variant intron_variant	MODIFIER	HG01071.hp2 HG01071.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0005 a0001c0002t0005	a0001c0002t0005g0093 a0001c0002t0005g0093	1	342	0.0029	38	c.313 others(57): Show c.313-16608_313-16607insATATATATATATATATATATATATAT ATATATTTTTTT	IL16	ENSG00000172349.19	transcript	ENST00000683961.1	protein_coding	2/18		INFO_REALIGN_3_PRIME	chr15	TogoVar
IL17RA_chr22_17080000_17120693	17094691	C C	CTCTCTCT others(31): Show CTCTCTCTCTCTCTCTATATATATATATATATATATATA	intron_variant intron_variant	MODIFIER	HG01993.hp2 HG01993.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0379 a0001c0001t0002g0379	1	416	0.0024	38	c.139 others(55): Show c.139-2370_139-2369insCTCTCTCTCTCTCTATATATATATATAT ATATATATAT	IL17RA	ENSG00000177663.15	transcript	ENST00000319363.11	protein_coding	1/12		INFO_REALIGN_3_PRIME	chr22	TogoVar
IL17RA_chr22_17080000_17120693	17094691	C C	CTCTCTCT others(31): Show CTCTCTCTCTCTCTCTCTCTCTATATATATATATATATA	intron_variant intron_variant	MODIFIER	NA18968.hp2 NA18968.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0160 a0001c0001t0001g0160	1	416	0.0024	38	c.139 others(55): Show c.139-2370_139-2369insCTCTCTCTCTCTCTCTCTCTATATATAT ATATATATAT	IL17RA	ENSG00000177663.15	transcript	ENST00000319363.11	protein_coding	1/12		INFO_REALIGN_3_PRIME	chr22	TogoVar
IL17RA_chr22_17080000_17120693	17103437	A A	ACCCAACT others(31): Show ACCCAACTAGCCTTACCCATCCCAACTAGCCTTACCCAT	intron_variant intron_variant	MODIFIER	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0014 a0001c0001t0014	a0001c0001t0014g0285 a0001c0001t0014g0285	1	416	0.0024	38	c.763 others(51): Show c.763-54_763-17dupCAACTAGCCTTACCCATCCCAACTAGCCTTAC CCATCC	IL17RA	ENSG00000177663.15	transcript	ENST00000319363.11	protein_coding	7/12		INFO_REALIGN_3_PRIME	chr22	TogoVar
IL17RD_chr3_57084982_57170353	57105552	A A	AATATATA others(31): Show AATATATATATATATATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG02630.hp2 HG02630.hp2	a0002 a0002	a0002c0003 a0002c0003	a0002c0003t0055 a0002c0003t0055	a0002c0003t0055g0008 a0002c0003t0055g0008	1	354	0.0028	38	c.747 others(53): Show c.747+304_747+305insATATATATATATATATATATATATATATAT ATATATAT	IL17RD	ENSG00000144730.19	transcript	ENST00000296318.12	protein_coding	7/12			chr3	TogoVar
IL1RAPL1_chrX_28582446_29961718	28969910	T T	TATATATG others(31): Show TATATATGTTTCTAAACACATATATATGTTTCTAAACAC	intron_variant intron_variant	MODIFIER	HG02723.hp1 HG02723.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0057 a0001c0001t0002g0057	1	135	0.0074	38	c.82+ others(57): Show c.82+180492_82+180529dupGTTTCTAAACACATATATATGTTTCT AAACACATATAT	IL1RAPL1	ENSG00000169306.11	transcript	ENST00000378993.6	protein_coding	2/10		INFO_REALIGN_3_PRIME	chrX	TogoVar
IL1RAPL1_chrX_28582446_29961718	28969950	T T	TATATATG others(31): Show TATATATGTTTCTAAACACATATATATGTTTCTAAACAC	intron_variant intron_variant	MODIFIER	HG02280.hp1 HG02280.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0017 a0001c0001t0017	a0001c0001t0017g0014 a0001c0001t0017g0014	1	135	0.0074	38	c.82+ others(57): Show c.82+180532_82+180569dupGTTTCTAAACACATATATATGTTTCT AAACACATATAT	IL1RAPL1	ENSG00000169306.11	transcript	ENST00000378993.6	protein_coding	2/10		INFO_REALIGN_3_PRIME	chrX	TogoVar
IL1RAPL1_chrX_28582446_29961718	29350191	T T	TTATATAT others(31): Show TTATATATGTATATATATATATATATATATATATATATA	intron_variant intron_variant	MODIFIER	HG02145.hp1 HG02145.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0122 a0001c0001t0001g0122	1	135	0.0074	38	c.363 others(57): Show c.363-46060_363-46059insGTATATATATATATATATATATATAT ATATATATATAT	IL1RAPL1	ENSG00000169306.11	transcript	ENST00000378993.6	protein_coding	3/10		INFO_REALIGN_3_PRIME	chrX	TogoVar
IL1RAPL1_chrX_28582446_29961718	29918144	A A	AAAAAAAA others(31): Show AAAAAAAAAATATATATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	NA18906.hp1 NA18906.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0119 a0001c0001t0001g0119	1	135	0.0074	38	c.911 others(53): Show c.911+549_911+550insAAAAAAAATATATATATATATATATATATA TATATATA	IL1RAPL1	ENSG00000169306.11	transcript	ENST00000378993.6	protein_coding	7/10		INFO_REALIGN_3_PRIME	chrX	TogoVar
IL1RAPL2_chrX_104561199_105772829	104849355	A A	AATATATA others(31): Show AATATATATATATATATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG01884.hp2 HG02074.hp1 HG02717.hp1 others(8): Show HG01884.hp2 HG02074.hp1 HG02717.hp1 HG03579.hp1 HG03688.hp1 HG03710.hp1 NA18906.hp2 NA18966.hp1 NA19030.hp1 NA19056.hp1 NA19088.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0001 a0001c0002t0001 a0001c0001t0001 a0001c0002t0001	a0001c0001t0001g0056 a0001c0001t0001g0066 a0001c0001t0001g0068 others(8): Show a0001c0001t0001g0056 a0001c0001t0001g0066 a0001c0001t0001g0068 a0001c0001t0001g0069 a0001c0001t0001g0099 a0001c0001t0001g0109 a0001c0001t0001g0131 a0001c0001t0001g0140 a0001c0002t0001g0006 a0001c0002t0001g0032 a0001c0002t0001g0102	11	141	0.0780	38	c.82+ others(57): Show c.82+190372_82+190373insATATATATATATATATATATATATAT ATATATATATAT	IL1RAPL2	ENSG00000189108.14	transcript	ENST00000372582.6	protein_coding	2/10		INFO_REALIGN_3_PRIME	chrX	TogoVar
IL1RAPL2_chrX_104561199_105772829	104855681	G G	GTGTTTTT others(31): Show GTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG01256.hp1 HG02132.hp1 NA18953.hp1 HG01256.hp1 HG02132.hp1 NA18953.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0001c0002 a0002c0003 a0001c0001 a0001c0002 a0002c0003	a0001c0001t0001 a0001c0002t0001 a0002c0003t0007 a0001c0001t0001 a0001c0002t0001 a0002c0003t0007	a0001c0001t0001g0009 a0001c0002t0001g0050 a0002c0003t0007g0094 a0001c0001t0001g0009 a0001c0002t0001g0050 a0002c0003t0007g0094	3	141	0.0213	38	c.82+ others(57): Show c.82+196687_82+196688insGTTTTTTTTTTTTTTTTTTTTTTTTT TTTTTTTTTTTT	IL1RAPL2	ENSG00000189108.14	transcript	ENST00000372582.6	protein_coding	2/10		INFO_REALIGN_3_PRIME	chrX	TogoVar
IL1RAPL2_chrX_104561199_105772829	105315578	G G	GTATATAT others(31): Show GTATATATATATATATATATATATATATATATATATATA	intron_variant intron_variant	MODIFIER	HG00642.hp1 HG01258.hp1 HG01261.hp1 others(4): Show HG00642.hp1 HG01258.hp1 HG01261.hp1 NA18940.hp1 NA18965.hp1 NA19091.hp1 NA20752.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0010 a0001c0001t0001g0023 a0001c0001t0001g0039 others(4): Show a0001c0001t0001g0010 a0001c0001t0001g0023 a0001c0001t0001g0039 a0001c0001t0001g0078 a0001c0001t0001g0096 a0001c0001t0001g0101 a0001c0001t0001g0113	7	141	0.0497	38	c.697 others(57): Show c.697+48060_697+48061insATATATATATATATATATATATATAT ATATATATATAT	IL1RAPL2	ENSG00000189108.14	transcript	ENST00000372582.6	protein_coding	5/10		INFO_REALIGN_3_PRIME	chrX	TogoVar
IL1RAP_chr3_190509085_190656514	190641693	T T	TCCATTTC others(31): Show TCCATTTCAGGTACGTGCAGCCAGCAACAACCTCCACCC	intron_variant intron_variant	MODIFIER	HG03139.hp1 HG03139.hp1	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0004 a0001c0003t0004	a0001c0003t0004g0169 a0001c0003t0004g0169	1	270	0.0037	38	c.105 others(57): Show c.1052-2549_1052-2512dupTCAGGTACGTGCAGCCAGCAACAACC TCCACCCCCATT	IL1RAP	ENSG00000196083.11	transcript	ENST00000447382.6	protein_coding	9/11		INFO_REALIGN_3_PRIME	chr3	TogoVar
IL21R_chr16_27397174_27457042	27440248	T T	TATATATA others(31): Show TATATATATATATATATATATATAGAGAGAGAGAGAGAG	intron_variant intron_variant	MODIFIER	HG02630.hp1 HG02630.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0029 a0001c0001t0029	a0001c0001t0029g0298 a0001c0001t0029g0298	1	372	0.0027	38	c.352 others(55): Show c.352+2562_352+2563insTATATATATATATATATATATAGAGAGA GAGAGAGAGA	IL21R	ENSG00000103522.17	transcript	ENST00000337929.8	protein_coding	4/8		INFO_REALIGN_3_PRIME	chr16	TogoVar
IL21R_chr16_27397174_27457042	27440248	T T	TATATATA others(31): Show TATATATATATATATATATATATATATATAGAGAGAGAG	intron_variant intron_variant	MODIFIER	HG02886.hp1 HG02886.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0016 a0001c0001t0016	a0001c0001t0016g0237 a0001c0001t0016g0237	1	372	0.0027	38	c.352 others(55): Show c.352+2562_352+2563insTATATATATATATATATATATATATATA GAGAGAGAGA	IL21R	ENSG00000103522.17	transcript	ENST00000337929.8	protein_coding	4/8		INFO_REALIGN_3_PRIME	chr16	TogoVar
IL21R_chr16_27397174_27457042	27440248	T T	TATATATA others(31): Show TATATATATATATATATATATATATATATATAGAGAGAG	intron_variant intron_variant	MODIFIER	HG02451.hp1 HG02451.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0021 a0001c0001t0021	a0001c0001t0021g0074 a0001c0001t0021g0074	1	372	0.0027	38	c.352 others(55): Show c.352+2562_352+2563insTATATATATATATATATATATATATATA TAGAGAGAGA	IL21R	ENSG00000103522.17	transcript	ENST00000337929.8	protein_coding	4/8		INFO_REALIGN_3_PRIME	chr16	TogoVar
IL2RA_chr10_6005689_6067367	6051817	C C	CTATATAT others(31): Show CTATATATATATATATATATATATATATATATATATATA	intron_variant intron_variant	MODIFIER	HG00621.hp2 HG01891.hp2 HG02165.hp1 others(3): Show HG00621.hp2 HG01891.hp2 HG02165.hp1 HG02965.hp2 NA18906.hp1 NA18962.hp1	a0001 a0003 a0001 a0003	a0001c0001 a0001c0004 a0003c0008 a0001c0001 a0001c0004 a0003c0008	a0001c0001t0001 a0001c0001t0003 a0001c0004t0004 others(1): Show a0001c0001t0001 a0001c0001t0003 a0001c0004t0004 a0003c0008t0001	a0001c0001t0001g0093 a0001c0001t0001g0109 a0001c0001t0001g0323 others(3): Show a0001c0001t0001g0093 a0001c0001t0001g0109 a0001c0001t0001g0323 a0001c0001t0003g0175 a0001c0004t0004g0189 a0003c0008t0001g0043	6	414	0.0145	38	c.64+ others(55): Show c.64+10270_64+10271insTATATATATATATATATATATATATATA TATATATATA	IL2RA	ENSG00000134460.19	transcript	ENST00000379959.8	protein_coding	1/7			chr10	TogoVar
IL31RA_chr5_55846357_55927850	55897000	A A	AAAAAAAA others(31): Show AAAAAAAAAAAAAAAAAAAAAAAAAAAATATATATATAT	intron_variant intron_variant	MODIFIER	HG01192.hp1 HG01192.hp1	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0004 a0001c0003t0004	a0001c0003t0004g0111 a0001c0003t0004g0111	1	322	0.0031	38	c.852 others(53): Show c.852+572_852+573insAAAAAAAAAAAAAAAAAAAAAAAAAATATA TATATATA	IL31RA	ENSG00000164509.16	transcript	ENST00000652347.2	protein_coding	7/14		INFO_REALIGN_3_PRIME	chr5	TogoVar
IL31RA_chr5_55846357_55927850	55897000	A A	AAAAAAAA others(31): Show AAAAAAAAAAAAAAAAAATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG03098.hp2 HG03098.hp2	a0003 a0003	a0003c0004 a0003c0004	a0003c0004t0030 a0003c0004t0030	a0003c0004t0030g0312 a0003c0004t0030g0312	1	322	0.0031	38	c.852 others(53): Show c.852+572_852+573insAAAAAAAAAAAAAAAATATATATATATATA TATATATA	IL31RA	ENSG00000164509.16	transcript	ENST00000652347.2	protein_coding	7/14		INFO_REALIGN_3_PRIME	chr5	TogoVar
IL31RA_chr5_55846357_55927850	55897000	A A	AATATATA others(31): Show AATATATATATATATATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG01106.hp1 HG01106.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0259 a0001c0001t0003g0259	1	322	0.0031	38	c.852 others(53): Show c.852+587_852+588insATATATATATATATATATATATATATATAT ATATATAT	IL31RA	ENSG00000164509.16	transcript	ENST00000652347.2	protein_coding	7/14		INFO_REALIGN_3_PRIME	chr5	TogoVar
IL31RA_chr5_55846357_55927850	55897015	A A	ATATATAT others(31): Show ATATATATATATATATATATATATATATATATTTTTTTT	intron_variant intron_variant	MODIFIER	NA19030.hp1 NA19030.hp1	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0052 a0001c0003t0052	a0001c0003t0052g0034 a0001c0003t0052g0034	1	322	0.0031	38	c.852 others(53): Show c.852+587_852+588insATATATATATATATATATATATATATATAT TTTTTTTT	IL31RA	ENSG00000164509.16	transcript	ENST00000652347.2	protein_coding	7/14		INFO_REALIGN_3_PRIME	chr5	TogoVar
IL31RA_chr5_55846357_55927850	55897015	A A	ATATATAT others(31): Show ATATATATATATATATATATATTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG02622.hp1 HG02622.hp1	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0033 a0002c0002t0033	a0002c0002t0033g0123 a0002c0002t0033g0123	1	322	0.0031	38	c.852 others(53): Show c.852+587_852+588insATATATATATATATATATATTTTTTTTTTT TTTTTTTT	IL31RA	ENSG00000164509.16	transcript	ENST00000652347.2	protein_coding	7/14		INFO_REALIGN_3_PRIME	chr5	TogoVar
IL31RA_chr5_55846357_55927850	55897015	A A	ATATATAT others(31): Show ATATATATATATATATATATTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG04204.hp1 HG04204.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0271 a0001c0001t0002g0271	1	322	0.0031	38	c.852 others(53): Show c.852+587_852+588insATATATATATATATATATTTTTTTTTTTTT TTTTTTTT	IL31RA	ENSG00000164509.16	transcript	ENST00000652347.2	protein_coding	7/14		INFO_REALIGN_3_PRIME	chr5	TogoVar
IL31RA_chr5_55846357_55927850	55897015	A A	ATATATAT others(31): Show ATATATATATATATATATTTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG00621.hp2 HG00621.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0001 a0002c0002t0001	a0002c0002t0001g0146 a0002c0002t0001g0146	1	322	0.0031	38	c.852 others(53): Show c.852+587_852+588insATATATATATATATATTTTTTTTTTTTTTT TTTTTTTT	IL31RA	ENSG00000164509.16	transcript	ENST00000652347.2	protein_coding	7/14		INFO_REALIGN_3_PRIME	chr5	TogoVar
IL33_chr9_6210807_6262983	6218675	C C	CATATATA others(31): Show CATATATATATGTTCTCCATATATATATATGTTCTCCAT	intron_variant intron_variant	MODIFIER	HG00099.hp2 HG00544.hp1 HG00597.hp2 others(36): Show HG00099.hp2 HG00544.hp1 HG00597.hp2 HG00621.hp1 HG01081.hp1 HG01168.hp2 HG01169.hp2 HG01256.hp2 HG01884.hp1 HG02015.hp1 HG02080.hp2 HG02135.hp1 HG02155.hp1 HG02155.hp2 HG02258.hp1 HG02293.hp1 HG02300.hp1 HG02486.hp1 HG02630.hp2 HG02698.hp1 HG02976.hp1 HG03654.hp1 HG04204.hp1 NA18944.hp2 NA18954.hp1 NA18957.hp2 NA18970.hp2 NA18976.hp1 NA18977.hp1 NA18991.hp1 NA18992.hp2 NA18993.hp1 NA18995.hp1 NA19009.hp2 NA19056.hp2 NA19062.hp1 NA19064.hp2 NA19085.hp2 NA19090.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0001 a0001c0001t0008 a0001c0002t0002 a0001c0001t0001 a0001c0001t0008 a0001c0002t0002	a0001c0001t0001g0044 a0001c0001t0001g0055 a0001c0001t0001g0086 others(36): Show a0001c0001t0001g0044 a0001c0001t0001g0055 a0001c0001t0001g0086 a0001c0001t0001g0089 a0001c0001t0001g0222 a0001c0001t0001g0229 a0001c0001t0001g0236 a0001c0001t0001g0238 a0001c0001t0008g0183 a0001c0002t0002g0045 a0001c0002t0002g0087 a0001c0002t0002g0088 a0001c0002t0002g0090 a0001c0002t0002g0204 a0001c0002t0002g0213 a0001c0002t0002g0214 a0001c0002t0002g0215 a0001c0002t0002g0216 a0001c0002t0002g0217 a0001c0002t0002g0218 a0001c0002t0002g0219 a0001c0002t0002g0220 a0001c0002t0002g0221 a0001c0002t0002g0223 a0001c0002t0002g0224 a0001c0002t0002g0225 a0001c0002t0002g0226 a0001c0002t0002g0227 a0001c0002t0002g0228 a0001c0002t0002g0230 a0001c0002t0002g0231 a0001c0002t0002g0232 a0001c0002t0002g0233 a0001c0002t0002g0234 a0001c0002t0002g0235 a0001c0002t0002g0237 a0001c0002t0002g0239 a0001c0002t0002g0284 a0001c0002t0002g0285	39	362	0.1077	38	c.-12 others(55): Show c.-12+2946_-12+2983dupATGTTCTCCATATATATATATGTTCTCC ATATATATAT	IL33	ENSG00000137033.12	transcript	ENST00000682010.1	protein_coding	1/7		INFO_REALIGN_3_PRIME	chr9	TogoVar
IL33_chr9_6210807_6262983	6218675	C C	CATATATA others(31): Show CATATATATATGTTCTCCATATGTATATATGTTCTCCAT	intron_variant intron_variant	MODIFIER	HG02523.hp1 HG02523.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0002 a0001c0002t0002	a0001c0002t0002g0274 a0001c0002t0002g0274	1	362	0.0028	38	c.-12 others(55): Show c.-12+2844_-12+2845insGTATATATGTTCTCCATATATATATATG TTCTCCATAT	IL33	ENSG00000137033.12	transcript	ENST00000682010.1	protein_coding	1/7		INFO_REALIGN_3_PRIME	chr9	TogoVar
IL33_chr9_6210807_6262983	6218825	C C	CATATATA others(31): Show CATATATATATATGTTCTCCATATATATATGTTCTCCAT	intron_variant intron_variant	MODIFIER	HG01978.hp1 HG01978.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0002 a0001c0002t0002	a0001c0002t0002g0305 a0001c0002t0002g0305	1	362	0.0028	38	c.-12 others(55): Show c.-12+2983_-12+2984insATGTTCTCCATATATATATGTTCTCCAT ATATATATAT	IL33	ENSG00000137033.12	transcript	ENST00000682010.1	protein_coding	1/7		INFO_REALIGN_3_PRIME	chr9	TogoVar
IL3RA_chrX_1331785_1387689	1366825	C C	CGCGGGGG others(31): Show CGCGGGGGTGCGCGGCGTGAGCCGGGGTGCGCGGGGTGA	intron_variant intron_variant	MODIFIER	HG02040.hp2 HG02040.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0024 a0001c0001t0001g0024	1	115	0.0087	38	c.874 others(55): Show c.874+1579_874+1580insGTGCGCGGCGTGAGCCGGGGTGCGCGGG GTGAGCGGGG	IL3RA	ENSG00000185291.12	transcript	ENST00000331035.10	protein_coding	9/11		INFO_REALIGN_3_PRIME	chrX	TogoVar
IL3RA_chrX_1331785_1387689	1367511	C C	CGGGGTGC others(31): Show CGGGGTGCGCGGGGTGAACCGGGTCGTGCGCGGGGTGCG	intron_variant intron_variant	MODIFIER	HG03195.hp1 HG03195.hp1	a0004 a0004	a0004c0018 a0004c0018	a0004c0018t0003 a0004c0018t0003	a0004c0018t0003g0112 a0004c0018t0003g0112	1	115	0.0087	38	c.874 others(55): Show c.874+2259_874+2260insGGGGTGCGCGGGGTGAACCGGGTCGTGC GCGGGGTGCG	IL3RA	ENSG00000185291.12	transcript	ENST00000331035.10	protein_coding	9/11			chrX	TogoVar
IL4_chr5_132668989_132687678	132685845	A A	AAAAAAAA others(31): Show AAAAAAAACAAAAAAAAACAAAAAAAAAACCTAGCCAAC	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01255.hp2 HG01255.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0003 a0001c0001t0002g0003	1	422	0.0024	38	c.32 others(49): Show c.3258_*3259insAAAAAAACAAAAAAAAACAAAAAAAAAACCTAGC CAAC	IL4	ENSG00000113520.11	transcript	ENST00000231449.7	protein_coding		3168		chr5	TogoVar
IL6R_chr1_154400343_154474450	154423260	A A	AATATATA others(31): Show AATATATATATATATATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG02165.hp1 NA19012.hp2 HG02165.hp1 NA19012.hp2	a0001 a0002 a0001 a0002	a0001c0003 a0002c0002 a0001c0003 a0002c0002	a0001c0003t0005 a0002c0002t0001 a0001c0003t0005 a0002c0002t0001	a0001c0003t0005g0079 a0002c0002t0001g0028 a0001c0003t0005g0079 a0002c0002t0001g0028	2	346	0.0058	38	c.86- others(53): Show c.86-5912_86-5911insATATATATATATATATATATATATATATAT ATATATAT	IL6R	ENSG00000160712.13	transcript	ENST00000368485.8	protein_coding	1/9		INFO_REALIGN_3_PRIME	chr1	TogoVar
IL6_chr7_22722200_22736998	22732121	T T	TATATATA others(31): Show TATATATACTATATATAATACATATACTATATATAATAA	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01891.hp2 HG02145.hp1 HG02559.hp1 others(5): Show HG01891.hp2 HG02145.hp1 HG02559.hp1 HG02886.hp2 HG03139.hp2 HG03195.hp1 HG03540.hp1 NA20300.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0007 a0001c0001t0001g0007	8	418	0.0191	38	c.54 others(47): Show c.548_*549insATATATACTATATATAATACATATACTATATATAAT AA	IL6	ENSG00000136244.12	transcript	ENST00000258743.10	protein_coding		124		chr7	TogoVar
ILRUN_chr6_34582288_34701767	34676442	C C	CTAGATAG others(31): Show CTAGATAGATAGATAGATAGATATAGCTAGCTAGCTAGA	intron_variant intron_variant	MODIFIER	HG03471.hp2 HG03471.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0013 a0001c0001t0013	a0001c0001t0013g0313 a0001c0001t0013g0313	1	316	0.0032	38	c.158 others(57): Show c.158+20003_158+20004insTCTAGCTAGCTAGCTATATCTATCTA TCTATCTATCTA	ILRUN	ENSG00000196821.10	transcript	ENST00000374023.8	protein_coding	1/4			chr6	TogoVar
ILRUN_chr6_34582288_34701767	34676442	C C	CTAGATAG others(31): Show CTAGATAGATAGATATAGCTAGCTAGCTAGCTAGCTAGA	intron_variant intron_variant	MODIFIER	HG02486.hp1 HG02486.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0008 a0001c0001t0001g0008	1	316	0.0032	38	c.158 others(57): Show c.158+19966_158+20003dupTCTAGCTAGCTAGCTAGCTAGCTATA TCTATCTATCTA	ILRUN	ENSG00000196821.10	transcript	ENST00000374023.8	protein_coding	1/4			chr6	TogoVar
ILRUN_chr6_34582288_34701767	34676442	C C	CTAGCTAG others(31): Show CTAGCTAGATAGATAGATAGATATAGCTAGCTAGCTAGA	intron_variant intron_variant	MODIFIER	HG02970.hp1 HG03139.hp2 NA19043.hp2 others(1): Show HG02970.hp1 HG03139.hp2 NA19043.hp2 NA19240.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0009 a0001c0002t0009	a0001c0002t0009g0308 a0001c0002t0009g0309 a0001c0002t0009g0310 others(1): Show a0001c0002t0009g0308 a0001c0002t0009g0309 a0001c0002t0009g0310 a0001c0002t0009g0311	4	316	0.0127	38	c.158 others(57): Show c.158+20003_158+20004insTCTAGCTAGCTAGCTATATCTATCTA TCTATCTAGCTA	ILRUN	ENSG00000196821.10	transcript	ENST00000374023.8	protein_coding	1/4			chr6	TogoVar
ILRUN_chr6_34582288_34701767	34676456	A A	AGATATAG others(31): Show AGATATAGCTAGCTAGCTAGATAGATAGATAGATATAGC	intron_variant intron_variant	MODIFIER	HG03195.hp2 HG03225.hp1 HG03516.hp2 HG03195.hp2 HG03225.hp1 HG03516.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0010 a0001c0001t0010	a0001c0001t0010g0305 a0001c0001t0010g0306 a0001c0001t0010g0307 a0001c0001t0010g0305 a0001c0001t0010g0306 a0001c0001t0010g0307	3	316	0.0095	38	c.158 others(57): Show c.158+19989_158+19990insGCTATATCTATCTATCTATCTAGCTA GCTAGCTATATC	ILRUN	ENSG00000196821.10	transcript	ENST00000374023.8	protein_coding	1/4			chr6	TogoVar
IMP4_chr2_130337897_130352967	130350029	A A	ATTTATTT others(31): Show ATTTATTTATTTATTTTATTTTATTTTATTTTATTTTAT	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01243.hp2 HG02055.hp2 HG02451.hp1 others(5): Show HG01243.hp2 HG02055.hp2 HG02451.hp1 HG02559.hp1 HG02886.hp2 HG03486.hp1 NA19030.hp1 NA20129.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0001 a0001c0001t0002	a0001c0001t0001g0001 a0001c0001t0002g0002 a0001c0001t0002g0006 a0001c0001t0001g0001 a0001c0001t0002g0002 a0001c0001t0002g0006	8	402	0.0199	38	c.35 others(49): Show c.3561_*3562insTTTATTTATTTATTTTATTTTATTTTATTTTATT TTAT	IMP4	ENSG00000136718.10	transcript	ENST00000259239.8	protein_coding		2063		chr2	TogoVar
INAVA_chr1_200889900_200920742	200917847	C C	CTCTCTAT others(31): Show CTCTCTATATATATATATATATATATATATATATATATA	downstream_gene_variant downstream_gene_variant	MODIFIER	NA18955.hp2 NA18955.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0109 a0001c0001t0003g0109	1	424	0.0024	38	c.42 others(49): Show c.4218_*4219insTCTCTATATATATATATATATATATATATATATA TATA	INAVA	ENSG00000163362.11	transcript	ENST00000413687.3	protein_coding		2106		chr1	TogoVar
INAVA_chr1_200889900_200920742	200917847	C C	CTCTCTCT others(31): Show CTCTCTCTCTCTATATATATATATATATATATATATATA	downstream_gene_variant downstream_gene_variant	MODIFIER	NA18948.hp2 NA18948.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0007 a0001c0002t0007	a0001c0002t0007g0002 a0001c0002t0007g0002	1	424	0.0024	38	c.42 others(49): Show c.4218_*4219insTCTCTCTCTCTATATATATATATATATATATATA TATA	INAVA	ENSG00000163362.11	transcript	ENST00000413687.3	protein_coding		2106		chr1	TogoVar
INAVA_chr1_200889900_200920742	200917847	C C	CTCTCTCT others(31): Show CTCTCTCTCTCTCTCTATATATATATATATATATATATA	downstream_gene_variant downstream_gene_variant	MODIFIER	NA18944.hp2 NA18944.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0007 a0001c0002t0007	a0001c0002t0007g0002 a0001c0002t0007g0002	1	424	0.0024	38	c.42 others(49): Show c.4218_*4219insTCTCTCTCTCTCTCTATATATATATATATATATA TATA	INAVA	ENSG00000163362.11	transcript	ENST00000413687.3	protein_coding		2106		chr1	TogoVar
INAVA_chr1_200889900_200920742	200917847	C C	CTCTCTCT others(31): Show CTCTCTCTCTCTCTCTCTATATATATATATATATATATA	downstream_gene_variant downstream_gene_variant	MODIFIER	HG03669.hp2 HG03669.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0005 a0001c0002t0005	a0001c0002t0005g0002 a0001c0002t0005g0002	1	424	0.0024	38	c.42 others(49): Show c.4218_*4219insTCTCTCTCTCTCTCTCTATATATATATATATATA TATA	INAVA	ENSG00000163362.11	transcript	ENST00000413687.3	protein_coding		2106		chr1	TogoVar
INAVA_chr1_200889900_200920742	200917847	C C	CTCTCTCT others(31): Show CTCTCTCTCTCTCTCTCTCTCTCTATATATATATATATA	downstream_gene_variant downstream_gene_variant	MODIFIER	NA18987.hp1 NA18987.hp1	a0001 a0001	a0001c0016 a0001c0016	a0001c0016t0004 a0001c0016t0004	a0001c0016t0004g0130 a0001c0016t0004g0130	1	424	0.0024	38	c.42 others(49): Show c.4218_*4219insTCTCTCTCTCTCTCTCTCTCTCTATATATATATA TATA	INAVA	ENSG00000163362.11	transcript	ENST00000413687.3	protein_coding		2106		chr1	TogoVar
INA_chr10_103272138_103295346	103278903	G G	GCACACAC others(31): Show GCACACACACACACACACACACACACACACACACACACA	intron_variant intron_variant	MODIFIER	HG03831.hp1 HG03831.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0066 a0001c0002t0001g0066	1	418	0.0024	38	c.106 others(55): Show c.1065+658_1065+659insACACACACACACACACACACACACACAC ACACACACAC	INA	ENSG00000148798.11	transcript	ENST00000369849.9	protein_coding	1/2		INFO_REALIGN_3_PRIME	chr10	TogoVar
INHA_chr2_219567310_219580711	219577574	G G	GAAAAAAA others(31): Show GAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAAAAAAAA	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02056.hp2 HG02056.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0002 a0001c0001t0001g0002	1	434	0.0023	38	c.20 others(49): Show c.2048_*2049insAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAAAA AAAA	INHA	ENSG00000123999.5	transcript	ENST00000243786.3	protein_coding		1864		chr2	TogoVar
INPP4B_chr4_142018160_142851301	142545734	C C	CATGTGTG others(31): Show CATGTGTGTGTATATGTGTGTATATACACATATGTGTGT	intron_variant intron_variant	MODIFIER	HG03225.hp2 HG03225.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0045 a0001c0001t0003g0045	1	90	0.0111	38	c.-19 others(59): Show c.-190-83009_-190-83008insACACACATATGTGTATATACACAC ATATACACACACAT	INPP4B	ENSG00000109452.13	transcript	ENST00000262992.9	protein_coding	2/25			chr4	TogoVar
INPP4B_chr4_142018160_142851301	142564451	A A	AAGAAAGA others(31): Show AAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	intron_variant intron_variant	MODIFIER	HG02015.hp1 HG02015.hp1	a0001 a0001	a0001c0007 a0001c0007	a0001c0007t0003 a0001c0007t0003	a0001c0007t0003g0019 a0001c0007t0003g0019	1	90	0.0111	38	c.-19 others(61): Show c.-190-101726_-190-101725insCTTTCTTTCTTTCTTTCTTTCT TTCTTTCTTTCTTTCT	INPP4B	ENSG00000109452.13	transcript	ENST00000262992.9	protein_coding	2/25			chr4	TogoVar
INPP5B_chr1_37855697_37952053	37917308	T T	TTATATAT others(31): Show TTATATATATATATATATATATATATATATATATATATA	intron_variant intron_variant	MODIFIER	NA19007.hp1 NA19007.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0096 a0001c0001t0001g0096	1	346	0.0029	38	c.532 others(57): Show c.532+14604_532+14605insTATATATATATATATATATATATATA TATATATATATA	INPP5B	ENSG00000204084.14	transcript	ENST00000373024.8	protein_coding	7/23			chr1	TogoVar
INPP5D_chr2_233055342_233212903	233116248	G G	GATAGATA others(31): Show GATAGATAGATAGATAGATAGATAGATATAGATATAGAT	intron_variant intron_variant	MODIFIER	HG03579.hp2 HG03579.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0121 a0001c0001t0001g0121	1	310	0.0032	38	c.199 others(55): Show c.199-5852_199-5851insGATAGATAGATAGATAGATATAGATATA GATATAGATA	INPP5D	ENSG00000168918.14	transcript	ENST00000445964.6	protein_coding	2/26		INFO_REALIGN_3_PRIME	chr2	TogoVar

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