Joint Open Genome and Omics Platform (JoGo)

Search by Variant

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Chr

Chromosome name (e.g., chr11).

Snpeff genename

Exact SnpEff gene name.

Sampleids

Target sampleid (e.g. HG02615).

Snpeff haplotype class

Haplotype-annotation class (e.g., ahapid, ahapid+chapid).

Snpeff annotation impact

Exact impact level (e.g., HIGH, MODERATE, LOW).

Snpeff annotation impact detail

Keyword match in SnpEff annotation.

Hapid

One or more haplotype IDs (comma-separated; e.g., a0001, a01, a0001c0001, a01c02, a1c2, a0001c0001t0005, a0001c0001t0005g0018).

Samplehapid

Sample haplotype IDs to include (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

No_hapid

Haplotype IDs to exclude (comma-separated; e.g., a0001, a0002, a0001c0001, a0001c0001t0005, a1, a01).

No_samplehapid

Sample haplotype IDs to exclude (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

Start

Start position (GRCh38).

End

End position (GRCh38).

Minac

Minimum alternate allele count (≥).

Maxac

Maximum alternate allele count (≤).

Minlen

Minimum variant length (≥).

Maxlen

Maximum variant length (≤).

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regionname	pos	ref	alt	annotation	impact	samples	ahapids	achapids	acthapids	actghapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	external
LMO1_chr11_8219309_8268878	8249832	G G	GTAAACTC others(31): Show GTAAACTCATTTCATTCATTATCCCGCTCAACAAATATT	intron_variant intron_variant	MODIFIER	NA18963.hp2 NA18963.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0170 a0001c0001t0001g0170	1	424	0.0024	38	c.25+ others(55): Show c.25+13505_25+13506insAATATTTGTTGAGCGGGATAATGAATGA AATGAGTTTA	LMO1	ENSG00000166407.14	transcript	ENST00000335790.8	protein_coding	1/3			chr11	TogoVar
LMO7_chr13_75631330_75864866	75632862	G G	GTTTTTTT others(31): Show GTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	upstream_gene_variant upstream_gene_variant	MODIFIER	NA19003.hp2 NA19003.hp2	a0003 a0003	a0003c0002 a0003c0002	a0003c0002t0001 a0003c0002t0001	a0003c0002t0001g0225 a0003c0002t0001g0225	1	272	0.0037	38	c.-37 others(49): Show c.-3796_-3795insTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT TTTT	LMO7	ENSG00000136153.20	transcript	ENST00000377534.8	protein_coding		3467		chr13	TogoVar
LMOD1_chr1_201891456_201951548	201947181	G G	GGAGAGAG others(31): Show GGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA	upstream_gene_variant upstream_gene_variant	MODIFIER	NA19067.hp1 NA19067.hp1	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0002 a0002c0002t0002	a0002c0002t0002g0109 a0002c0002t0002g0109	1	400	0.0025	38	c.-84 others(47): Show c.-842_-841insTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC TC	LMOD1	ENSG00000163431.14	transcript	ENST00000367288.5	protein_coding		634		chr1	TogoVar
LMOD1_chr1_201891456_201951548	201948378	G G	GAAAGAAA others(31): Show GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA	upstream_gene_variant upstream_gene_variant	MODIFIER	NA19030.hp2 NA19030.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0013 a0001c0001t0013	a0001c0001t0013g0019 a0001c0001t0013g0019	1	400	0.0025	38	c.-20 others(49): Show c.-2039_-2038insTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTT CTTT	LMOD1	ENSG00000163431.14	transcript	ENST00000367288.5	protein_coding		1831		chr1	TogoVar
LMTK2_chr7_98101862_98214638	98140149	T T	TCCTTCCT others(31): Show TCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCC	intron_variant intron_variant	MODIFIER	HG02004.hp1 HG02148.hp2 HG02293.hp1 others(2): Show HG02004.hp1 HG02148.hp2 HG02293.hp1 NA18969.hp2 NA19009.hp2	a0001 a0001	a0001c0001 a0001c0008 a0001c0001 a0001c0008	a0001c0001t0002 a0001c0008t0001 a0001c0001t0002 a0001c0008t0001	a0001c0001t0002g0271 a0001c0001t0002g0325 a0001c0008t0001g0257 others(2): Show a0001c0001t0002g0271 a0001c0001t0002g0325 a0001c0008t0001g0257 a0001c0008t0001g0261 a0001c0008t0001g0328	5	390	0.0128	38	c.232 others(55): Show c.232-1248_232-1247insCCTTCCTTCCTTCCTTCCTTCCTTCCTT CCTTCCTTCC	LMTK2	ENSG00000164715.6	transcript	ENST00000297293.6	protein_coding	2/13			chr7	TogoVar
LNPK_chr2_175918882_176007267	175951607	A A	ATATATAT others(31): Show ATATATATATATATATATATATATATATATATATATATC	intron_variant intron_variant	MODIFIER	HG01358.hp1 HG01978.hp1 HG03669.hp2 HG01358.hp1 HG01978.hp1 HG03669.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0009 a0001c0001t0012 a0001c0001t0009 a0001c0001t0012	a0001c0001t0009g0145 a0001c0001t0009g0146 a0001c0001t0012g0139 a0001c0001t0009g0145 a0001c0001t0009g0146 a0001c0001t0012g0139	3	368	0.0082	38	c.494 others(55): Show c.494-3916_494-3915insGATATATATATATATATATATATATATA TATATATATA	LNPK	ENSG00000144320.14	transcript	ENST00000272748.9	protein_coding	8/12			chr2	TogoVar
LNX1_chr4_53454301_53596486	53492506	T T	TGAGAGAG others(31): Show TGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA	intron_variant intron_variant	MODIFIER	HG01978.hp2 NA19079.hp1 HG01978.hp2 NA19079.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0167 a0001c0001t0001g0307 a0001c0001t0001g0167 a0001c0001t0001g0307	2	356	0.0056	38	c.135 others(57): Show c.1350+3516_1350+3517insTCTCTCTCTCTCTCTCTCTCTCTCTC TCTCTCTCTCTC	LNX1	ENSG00000072201.14	transcript	ENST00000263925.8	protein_coding	6/10			chr4	TogoVar
LNX2_chr13_27540913_27625529	27560565	G G	GTATATAT others(31): Show GTATATATATATATATATATATATATATATATATATATA	intron_variant intron_variant	MODIFIER	HG01496.hp2 HG02056.hp1 HG01496.hp2 HG02056.hp1	a0001 a0001	a0001c0001 a0001c0003 a0001c0001 a0001c0003	a0001c0001t0024 a0001c0003t0005 a0001c0001t0024 a0001c0003t0005	a0001c0001t0024g0040 a0001c0003t0005g0030 a0001c0001t0024g0040 a0001c0003t0005g0030	2	358	0.0056	38	c.122 others(55): Show c.1225-581_1225-580insTATATATATATATATATATATATATATA TATATATATA	LNX2	ENSG00000139517.9	transcript	ENST00000316334.5	protein_coding	5/9			chr13	TogoVar
LNX2_chr13_27540913_27625529	27583204	G G	GCGCGCGC others(31): Show GCGCGCGCGTGCGCGCGCGTGTCCTCTCCAATATAACTT	intron_variant intron_variant	MODIFIER	NA19011.hp2 NA19011.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0005 a0001c0001t0005	a0001c0001t0005g0045 a0001c0001t0005g0045	1	358	0.0028	38	c.-10 others(57): Show c.-100-1402_-100-1401insAAGTTATATTGGAGAGGACACGCGCG CGCACGCGCGCG	LNX2	ENSG00000139517.9	transcript	ENST00000316334.5	protein_coding	1/9			chr13	TogoVar
LOC122539214_chr19_52645447_52695496	52667461	T T	TAAAACTG others(31): Show TAAAACTGTTGAAGAAACAGTTTATGTGCAAGTTGTGTA	intron_variant intron_variant	MODIFIER	NA18960.hp2 NA18960.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0004 a0002c0002t0004	a0002c0002t0004g0156 a0002c0002t0004g0156	1	452	0.0022	38	c.-19 others(55): Show c.-19-6656_-19-6619dupTACACAACTTGCACATAAACTGTTTCTT CAACAGTTTT	LOC122539214	ENSG00000269825.3	transcript	ENST00000598322.3	protein_coding	1/3			chr19	TogoVar
LOC128092252_chr15_50643802_50691717	50679474	T T	TTATATAT others(31): Show TTATATATATATATTATATATATGTGTATATATATAATA	intron_variant intron_variant	MODIFIER	HG02486.hp2 NA20905.hp1 HG02486.hp2 NA20905.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0000 a0001c0001t0000	a0001c0001t0000g0324 a0001c0001t0000g0338 a0001c0001t0000g0324 a0001c0001t0000g0338	2	388	0.0052	38	c.187 others(55): Show c.187+7056_187+7057insTATTATATATATACACATATATATAATA TATATATATA	LOC128092252	ENSG00000288645.1	transcript	ENST00000676296.1	protein_coding	1/3			chr15	TogoVar
LOC128092252_chr15_50643802_50691717	50679517	T T	TATATATA others(31): Show TATATATATATATATATTATATATATGTGTATATATATA	intron_variant intron_variant	MODIFIER	HG02572.hp1 NA18522.hp2 HG02572.hp1 NA18522.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0000 a0001c0001t0000	a0001c0001t0000g0017 a0001c0001t0000g0182 a0001c0001t0000g0017 a0001c0001t0000g0182	2	388	0.0052	38	c.187 others(55): Show c.187+7013_187+7014insTATATATATACACATATATATAATATAT ATATATATAT	LOC128092252	ENSG00000288645.1	transcript	ENST00000676296.1	protein_coding	1/3			chr15	TogoVar
LOC128462377_chr16_89312046_89423292	89400032	C C	TGGTCATC others(31): Show TGGTCATCTGCTGCCCCAGGCTTCCCTGCGCTGGGGGAC	intron_variant intron_variant	MODIFIER	HG00280.hp2 HG00673.hp1 NA18950.hp1 others(7): Show HG00280.hp2 HG00673.hp1 NA18950.hp1 NA18964.hp1 NA18980.hp2 NA18984.hp2 NA18985.hp1 NA18991.hp2 NA19010.hp2 NA19062.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0000 a0001c0001t0000	a0001c0001t0000g0232 a0001c0001t0000g0250 a0001c0001t0000g0285 others(7): Show a0001c0001t0000g0232 a0001c0001t0000g0250 a0001c0001t0000g0285 a0001c0001t0000g0286 a0001c0001t0000g0287 a0001c0001t0000g0288 a0001c0001t0000g0295 a0001c0001t0000g0308 a0001c0001t0000g0311 a0001c0001t0000g0336	10	366	0.0273	38	c.9+1 others(53): Show c.9+18252_9+18253insTCCCCCAGCGCAGGGAAGCCTGGGGCAGCA GATGACCA	LOC128462377	ENSG00000288715.2	transcript	ENST00000711617.1	protein_coding	1/1			chr16	TogoVar
LOC128462377_chr16_89312046_89423292	89400071	G G	GGTCATCT others(31): Show GGTCATCTGCTGCCCCAGGCTTCCCTGCGCTGGGGGACA	intron_variant intron_variant	MODIFIER	HG00423.hp2 NA19086.hp1 HG00423.hp2 NA19086.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0000 a0001c0001t0000	a0001c0001t0000g0123 a0001c0001t0000g0148 a0001c0001t0000g0123 a0001c0001t0000g0148	2	366	0.0055	38	c.9+1 others(53): Show c.9+18212_9+18213insTGTCCCCCAGCGCAGGGAAGCCTGGGGCAG CAGATGAC	LOC128462377	ENSG00000288715.2	transcript	ENST00000711617.1	protein_coding	1/1			chr16	TogoVar
LOC128462377_chr16_89312046_89423292	89400373	A A	ACGGTCAT others(31): Show ACGGTCATCTGCTGCCCCAGGCTTCCCTGCGCTGGGGGC	intron_variant intron_variant	MODIFIER	NA19084.hp2 NA19084.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0000 a0001c0001t0000	a0001c0001t0000g0283 a0001c0001t0000g0283	1	366	0.0027	38	c.9+1 others(53): Show c.9+17910_9+17911insGCCCCCAGCGCAGGGAAGCCTGGGGCAGCA GATGACCG	LOC128462377	ENSG00000288715.2	transcript	ENST00000711617.1	protein_coding	1/1			chr16	TogoVar
LOC128462377_chr16_89312046_89423292	89400753	A A	ACGGTCAT others(31): Show ACGGTCATCTGCTGCCCCAGGCTTCCCTGCGCTGGGGGC	intron_variant intron_variant	MODIFIER	HG00621.hp2 NA19077.hp2 HG00621.hp2 NA19077.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0000 a0001c0001t0000	a0001c0001t0000g0010 a0001c0001t0000g0065 a0001c0001t0000g0010 a0001c0001t0000g0065	2	366	0.0055	38	c.9+1 others(53): Show c.9+17530_9+17531insGCCCCCAGCGCAGGGAAGCCTGGGGCAGCA GATGACCG	LOC128462377	ENSG00000288715.2	transcript	ENST00000711617.1	protein_coding	1/1			chr16	TogoVar
LOC128462377_chr16_89312046_89423292	89401848	G G	GCACCAGA others(31): Show GCACCAGAGACTCCCCCATCCCCCAGAACCCGCCGGGCA	intron_variant intron_variant	MODIFIER	HG01433.hp2 HG02129.hp2 HG02698.hp1 others(2): Show HG01433.hp2 HG02129.hp2 HG02698.hp1 HG03669.hp2 HG03688.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0000 a0001c0001t0000	a0001c0001t0000g0067 a0001c0001t0000g0082 a0001c0001t0000g0106 others(2): Show a0001c0001t0000g0067 a0001c0001t0000g0082 a0001c0001t0000g0106 a0001c0001t0000g0108 a0001c0001t0000g0356	5	366	0.0137	38	c.9+1 others(53): Show c.9+16398_9+16435dupTGCCCGGCGGGTTCTGGGGGATGGGGGAGT CTCTGGTG	LOC128462377	ENSG00000288715.2	transcript	ENST00000711617.1	protein_coding	1/1			chr16	TogoVar
LOC128462377_chr16_89312046_89423292	89415829	C C	CAAAAAAA others(31): Show CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG02145.hp1 HG02145.hp2 NA18906.hp1 others(2): Show HG02145.hp1 HG02145.hp2 NA18906.hp1 NA18939.hp2 NA18940.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0000 a0001c0001t0000	a0001c0001t0000g0017 a0001c0001t0000g0206 a0001c0001t0000g0207 others(2): Show a0001c0001t0000g0017 a0001c0001t0000g0206 a0001c0001t0000g0207 a0001c0001t0000g0208 a0001c0001t0000g0209	5	366	0.0137	38	c.9+2 others(51): Show c.9+2454_9+2455insTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT TTTTTT	LOC128462377	ENSG00000288715.2	transcript	ENST00000711617.1	protein_coding	1/1			chr16	TogoVar
LOC400499_chr16_11367015_11532247	11494117	G G	GGGGGCGG others(31): Show GGGGGCGGGGCAGTGGCGTGGGGGGCGGGGCAGTGGCGT	intron_variant intron_variant	MODIFIER	HG01243.hp1 HG01243.hp1	a0244 a0244	a0244c0053 a0244c0053	a0244c0053t0001 a0244c0053t0001	a0244c0053t0001g0075 a0244c0053t0001g0075	1	310	0.0032	38	c.143 others(55): Show c.1432-322_1432-321insACGCCACTGCCCCGCCCCCCACGCCACT GCCCCGCCCC	LOC400499	ENSG00000188897.10	transcript	ENST00000696174.1	protein_coding	11/66			chr16	TogoVar
LOC400499_chr16_11367015_11532247	11515716	A A	AAGGAGGA others(31): Show AAGGAGGAGGAAAAGGGAGGAGGAGGAGGAAAAGGGAGG	intron_variant intron_variant	MODIFIER	HG02738.hp1 HG02738.hp1	a0190 a0190	a0190c0199 a0190c0199	a0190c0199t0003 a0190c0199t0003	a0190c0199t0003g0144 a0190c0199t0003g0144	1	310	0.0032	38	c.654 others(53): Show c.654+175_654+212dupCCTCCCTTTTCCTCCTCCTCCTCCCTTTTC CTCCTCCT	LOC400499	ENSG00000188897.10	transcript	ENST00000696174.1	protein_coding	6/66			chr16	TogoVar
LOC400499_chr16_11367015_11532247	11515744	G G	GAAAAGGG others(31): Show GAAAAGGGAGGAGGAGGAGGAAAAGGGAGGAGGAGGAGA	intron_variant intron_variant	MODIFIER	NA18522.hp1 NA18522.hp1	a0156 a0156	a0156c0233 a0156c0233	a0156c0233t0002 a0156c0233t0002	a0156c0233t0002g0306 a0156c0233t0002g0306	1	310	0.0032	38	c.654 others(53): Show c.654+184_654+185insTCTCCTCCTCCTCCCTTTTCCTCCTCCTCC TCCCTTTT	LOC400499	ENSG00000188897.10	transcript	ENST00000696174.1	protein_coding	6/66			chr16	TogoVar
LOXHD1_chr18_46472273_46662220	46494847	C C	CTTTTTTT others(31): Show CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG03927.hp1 HG03927.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0223 a0001c0001t0001g0223	1	270	0.0037	38	c.587 others(57): Show c.5879-5706_5879-5705insAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAA	LOXHD1	ENSG00000167210.17	transcript	ENST00000642948.1	protein_coding	37/40			chr18	TogoVar
LOXL1_chr15_73921462_73957136	73921986	G G	GAGGCTGA others(31): Show GAGGCTGAGGCAGGAGGATGGCTTGAGCCCAGGAGTTCA	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00639.hp2 HG00639.hp2	a0003 a0003	a0003c0003 a0003c0003	a0003c0003t0002 a0003c0003t0002	a0003c0003t0002g0138 a0003c0003t0002g0138	1	448	0.0022	38	c.-47 others(49): Show c.-4798_-4797insAGGCTGAGGCAGGAGGATGGCTTGAGCCCAGGAG TTCA	LOXL1	ENSG00000129038.16	transcript	ENST00000261921.8	protein_coding		4475		chr15	TogoVar
LPA_chr6_160526482_160669275	160576348	A A	ATATATAT others(31): Show ATATATATATATATATACATATATATATATATATATGTG	intron_variant intron_variant	MODIFIER	HG00733.hp2 HG03704.hp2 NA18952.hp1 others(1): Show HG00733.hp2 HG03704.hp2 NA18952.hp1 NA19057.hp1	a0001 a0001	a0001c0001 a0001c0009 a0001c0001 a0001c0009	a0001c0001t0002 a0001c0009t0002 a0001c0001t0002 a0001c0009t0002	a0001c0001t0002g0030 a0001c0009t0002g0027 a0001c0009t0002g0028 others(1): Show a0001c0001t0002g0030 a0001c0009t0002g0027 a0001c0009t0002g0028 a0001c0009t0002g0029	4	148	0.0270	38	c.463 others(55): Show c.4631+787_4631+788insCACATATATATATATATATATGTATATA TATATATATA	LPA	ENSG00000198670.13	transcript	ENST00000316300.10	protein_coding	28/38			chr6	TogoVar
LPA_chr6_160526482_160669275	160576373	T T	TATATATA others(31): Show TATATATATATATGTGTATATATATATATATATATATAC	intron_variant intron_variant	MODIFIER	HG02027.hp2 HG02027.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0033 a0001c0001t0002g0033	1	148	0.0068	38	c.463 others(55): Show c.4631+762_4631+763insGTATATATATATATATATATATACACAT ATATATATAT	LPA	ENSG00000198670.13	transcript	ENST00000316300.10	protein_coding	28/38			chr6	TogoVar
LPCAT2_chr16_55504072_55591666	55509991	C C	CTTTTTTT others(31): Show CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG03139.hp2 HG03139.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0016 a0001c0002t0016	a0001c0002t0016g0084 a0001c0002t0016g0084	1	314	0.0032	38	c.171 others(53): Show c.171+656_171+657insTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT TTTTTTTT	LPCAT2	ENSG00000087253.13	transcript	ENST00000262134.10	protein_coding	1/13		INFO_REALIGN_3_PRIME	chr16	TogoVar
LPCAT4_chr15_34353633_34372196	34370948	C C	CGACCGAA others(31): Show CGACCGAAGACCCCACGCGACGGAGAGGGGAGGCCTGAA	upstream_gene_variant upstream_gene_variant	MODIFIER	NA18973.hp1 NA18973.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0002 a0001c0001t0002g0002	1	450	0.0022	38	c.-38 others(49): Show c.-3849_-3848insTTCAGGCCTCCCCTCTCCGTCGCGTGGGGTCTTC GGTC	LPCAT4	ENSG00000176454.15	transcript	ENST00000314891.11	protein_coding		3753		chr15	TogoVar
LPIN2_chr18_2911999_3018144	2956311	G G	GGTGTGTG others(31): Show GGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT	intron_variant intron_variant	MODIFIER	HG01934.hp1 HG02809.hp2 NA18942.hp2 others(1): Show HG01934.hp1 HG02809.hp2 NA18942.hp2 NA18947.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0009 a0001c0001t0018 a0001c0001t0030 a0001c0001t0009 a0001c0001t0018 a0001c0001t0030	a0001c0001t0009g0280 a0001c0001t0009g0374 a0001c0001t0018g0031 others(1): Show a0001c0001t0009g0280 a0001c0001t0009g0374 a0001c0001t0018g0031 a0001c0001t0030g0149	4	380	0.0105	38	c.193 others(55): Show c.193-1713_193-1712insACACACACACACACACACACACACACAC ACACACACAC	LPIN2	ENSG00000101577.11	transcript	ENST00000677752.1	protein_coding	2/19			chr18	TogoVar
LPP_chr3_188149157_188895671	188203551	T T	TTTTAAAT others(31): Show TTTTAAATATATATAAATATATATTTAAATATATATATA	intron_variant intron_variant	MODIFIER	HG01175.hp1 HG01361.hp2 HG01978.hp1 others(4): Show HG01175.hp1 HG01361.hp2 HG01978.hp1 HG02738.hp1 HG03704.hp2 HG03834.hp2 NA20752.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0005 others(1): Show a0001c0001 a0001c0002 a0001c0005 a0001c0006	a0001c0001t0001 a0001c0001t0005 a0001c0001t0026 others(4): Show a0001c0001t0001 a0001c0001t0005 a0001c0001t0026 a0001c0001t0049 a0001c0002t0001 a0001c0005t0040 a0001c0006t0034	a0001c0001t0001g0056 a0001c0001t0005g0024 a0001c0001t0026g0069 others(4): Show a0001c0001t0001g0056 a0001c0001t0005g0024 a0001c0001t0026g0069 a0001c0001t0049g0031 a0001c0002t0001g0055 a0001c0005t0040g0030 a0001c0006t0034g0039	7	76	0.0921	38	c.-18 others(59): Show c.-189-21817_-189-21780dupTATTTAAATATATATAAATATATA TTTAAATATATATA	LPP	ENSG00000145012.15	transcript	ENST00000617246.5	protein_coding	1/11		INFO_REALIGN_3_PRIME	chr3	TogoVar
LPP_chr3_188149157_188895671	188248468	T T	TTATATAT others(31): Show TTATATATATATATATATATATATATATATATATATATA	intron_variant intron_variant	MODIFIER	HG02738.hp2 HG02738.hp2	a0001 a0001	a0001c0006 a0001c0006	a0001c0006t0066 a0001c0006t0066	a0001c0006t0066g0021 a0001c0006t0066g0021	1	76	0.0132	38	c.-67 others(57): Show c.-67+22971_-67+22972insTATATATATATATATATATATATATA TATATATATATA	LPP	ENSG00000145012.15	transcript	ENST00000617246.5	protein_coding	2/11		INFO_REALIGN_3_PRIME	chr3	TogoVar
LPP_chr3_188149157_188895671	188371641	A A	ATATATAT others(31): Show ATATATATATATATATATATATATATATATATATATATT	intron_variant intron_variant	MODIFIER	HG03453.hp2 HG03453.hp2	a0006 a0006	a0006c0013 a0006c0013	a0006c0013t0003 a0006c0013t0003	a0006c0013t0003g0046 a0006c0013t0003g0046	1	76	0.0132	38	c.-10 others(57): Show c.-10+29923_-10+29924insATATATATATATATATATATATATAT ATATATATATTT	LPP	ENSG00000145012.15	transcript	ENST00000617246.5	protein_coding	3/11		INFO_REALIGN_3_PRIME	chr3	TogoVar
LPP_chr3_188149157_188895671	188426153	C C	CCCAGAAA others(31): Show CCCAGAAATTGTGACATTGTGTCCCAGAAATTGTGACAA	intron_variant intron_variant	MODIFIER	HG02970.hp2 NA19030.hp2 HG02970.hp2 NA19030.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0010 a0001c0002t0047 a0001c0002t0010 a0001c0002t0047	a0001c0002t0010g0025 a0001c0002t0047g0033 a0001c0002t0010g0025 a0001c0002t0047g0033	2	76	0.0263	38	c.193 others(57): Show c.193+19840_193+19841insCCAGAAATTGTGACATTGTGTCCCAG AAATTGTGACAA	LPP	ENSG00000145012.15	transcript	ENST00000617246.5	protein_coding	4/11			chr3	TogoVar
LPP_chr3_188149157_188895671	188495064	T T	TTATATAT others(31): Show TTATATATATATATATATATATATATATATATATATATA	intron_variant intron_variant	MODIFIER	HG01081.hp1 HG02738.hp1 HG01081.hp1 HG02738.hp1	a0001 a0001	a0001c0005 a0001c0006 a0001c0005 a0001c0006	a0001c0005t0040 a0001c0006t0032 a0001c0005t0040 a0001c0006t0032	a0001c0005t0040g0030 a0001c0006t0032g0005 a0001c0005t0040g0030 a0001c0006t0032g0005	2	76	0.0263	38	c.306 others(57): Show c.306+10379_306+10380insATATATATATATATATATATATATAT ATATATATATAT	LPP	ENSG00000145012.15	transcript	ENST00000617246.5	protein_coding	5/11		INFO_REALIGN_3_PRIME	chr3	TogoVar
LPXN_chr11_58521871_58580856	58579794	C C	CTACCGGC others(31): Show CTACCGGCGAGCGCTTCGGGAGCCTGTGCTCTCTCTGCG	upstream_gene_variant upstream_gene_variant	MODIFIER	NA19010.hp2 NA19010.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0023 a0001c0001t0001g0023	1	328	0.0031	38	c.-40 others(49): Show c.-4023_-4022insCGCAGAGAGAGCACAGGCTCCCGAAGCGCTCGCC GGTA	LPXN	ENSG00000110031.13	transcript	ENST00000395074.7	protein_coding		3939		chr11	TogoVar
LRBA_chr4_150259435_151020284	150694462	C C	CAAAAAAA others(31): Show CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG02165.hp1 HG02165.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0034 a0001c0001t0002g0034	1	180	0.0056	38	c.575 others(59): Show c.5755-10746_5755-10745insTTTTTTTTTTTTTTTTTTTTTTTT TTTTTTTTTTTTTT	LRBA	ENSG00000198589.15	transcript	ENST00000651943.2	protein_coding	36/56			chr4	TogoVar
LRBA_chr4_150259435_151020284	150780607	A A	ATATATAT others(31): Show ATATATATATACATATATATACACGTATATATATACGTG	intron_variant intron_variant	MODIFIER	HG02559.hp1 HG02559.hp1	a0022 a0022	a0022c0039 a0022c0039	a0022c0039t0001 a0022c0039t0001	a0022c0039t0001g0073 a0022c0039t0001g0073	1	180	0.0056	38	c.558 others(59): Show c.5580+17473_5580+17474insCACGTATATATATACGTGTATATA TATGTATATATATA	LRBA	ENSG00000198589.15	transcript	ENST00000651943.2	protein_coding	34/56			chr4	TogoVar
LRCH1_chr13_46548170_46749898	46558572	C C	CAAAAAAA others(31): Show CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG03098.hp1 NA19043.hp2 HG03098.hp1 NA19043.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0003 a0001c0002t0022 a0001c0002t0003 a0001c0002t0022	a0001c0002t0003g0221 a0001c0002t0022g0106 a0001c0002t0003g0221 a0001c0002t0022g0106	2	274	0.0073	38	c.307 others(55): Show c.307+4895_307+4896insAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAA	LRCH1	ENSG00000136141.15	transcript	ENST00000389797.8	protein_coding	1/19		INFO_REALIGN_3_PRIME	chr13	TogoVar
LRCH1_chr13_46548170_46749898	46560140	C C	CATATATA others(31): Show CATATATATATATATATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG04228.hp1 HG04228.hp1	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0004 a0001c0003t0004	a0001c0003t0004g0088 a0001c0003t0004g0088	1	274	0.0037	38	c.307 others(55): Show c.307+6446_307+6447insTATATATATATATATATATATATATATA TATATATATA	LRCH1	ENSG00000136141.15	transcript	ENST00000389797.8	protein_coding	1/19		INFO_REALIGN_3_PRIME	chr13	TogoVar
LRCH3_chr3_197786254_197893436	197792577	T T	TTATATAT others(31): Show TTATATATATATATATATATATATATATATATATATATA	intron_variant intron_variant	MODIFIER	HG00544.hp1 HG00544.hp2 HG00621.hp1 others(7): Show HG00544.hp1 HG00544.hp2 HG00621.hp1 HG00621.hp2 HG02523.hp1 HG03195.hp2 HG03579.hp1 NA18961.hp1 NA18961.hp2 NA18962.hp2	a0001 a0002 a0007 a0001 a0002 a0007	a0001c0001 a0001c0002 a0001c0004 others(2): Show a0001c0001 a0001c0002 a0001c0004 a0002c0003 a0007c0015	a0001c0001t0001 a0001c0001t0008 a0001c0002t0001 others(4): Show a0001c0001t0001 a0001c0001t0008 a0001c0002t0001 a0001c0002t0004 a0001c0004t0006 a0002c0003t0002 a0007c0015t0013	a0001c0001t0001g0271 a0001c0001t0001g0274 a0001c0001t0001g0276 others(7): Show a0001c0001t0001g0271 a0001c0001t0001g0274 a0001c0001t0001g0276 a0001c0001t0008g0272 a0001c0002t0001g0270 a0001c0002t0001g0278 a0001c0002t0004g0277 a0001c0004t0006g0279 a0002c0003t0002g0275 a0007c0015t0013g0273	10	292	0.0343	38	c.262 others(55): Show c.262+1065_262+1066insTATATATATATATATATATATATATATA TATATATATA	LRCH3	ENSG00000186001.14	transcript	ENST00000425562.7	protein_coding	1/20		INFO_REALIGN_3_PRIME	chr3	TogoVar
LRCOL1_chr12_132598151_132615582	132598272	T T	TCCTCCTC others(31): Show TCCTCCTCTCCGCGCGCCCCCTCCTCTCCGCGCGCCCCG	downstream_gene_variant downstream_gene_variant	MODIFIER	NA18965.hp2 NA18965.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0001 a0001c0001t0001g0001	1	390	0.0026	38	c.51 others(49): Show c.5129_*5130insCGGGGCGCGCGGAGAGGAGGGGGCGCGCGGAGAG GAGG	LRCOL1	ENSG00000204583.10	transcript	ENST00000376608.9	protein_coding		4878		chr12	TogoVar
LRFN5_chr14_41601876_41909549	41610661	T T	TAAAAAAA others(31): Show TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	NA18954.hp2 NA19004.hp2 NA18954.hp2 NA19004.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0040 a0001c0001t0001g0041 a0001c0001t0001g0040 a0001c0001t0001g0041	2	280	0.0071	38	c.-19 others(57): Show c.-197+2121_-197+2122insAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAA	LRFN5	ENSG00000165379.14	transcript	ENST00000298119.9	protein_coding	1/5		INFO_REALIGN_3_PRIME	chr14	TogoVar
LRFN5_chr14_41601876_41909549	41734316	T T	TTATATAT others(31): Show TTATATATATATATATATATATATATATATATATATATA	intron_variant intron_variant	MODIFIER	HG00609.hp2 HG01106.hp2 HG01358.hp2 others(3): Show HG00609.hp2 HG01106.hp2 HG01358.hp2 NA18980.hp1 NA18983.hp2 NA19000.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(1): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0002t0003	a0001c0001t0001g0060 a0001c0001t0001g0064 a0001c0001t0002g0012 others(3): Show a0001c0001t0001g0060 a0001c0001t0001g0064 a0001c0001t0002g0012 a0001c0001t0003g0232 a0001c0001t0003g0233 a0001c0002t0003g0265	6	280	0.0214	38	c.-19 others(59): Show c.-196-32509_-196-32508insATATATATATATATATATATATAT ATATATATATATAT	LRFN5	ENSG00000165379.14	transcript	ENST00000298119.9	protein_coding	1/5		INFO_REALIGN_3_PRIME	chr14	TogoVar
LRFN5_chr14_41601876_41909549	41734316	T T	TTATTTAT others(31): Show TTATTTATATATATATATATATATATATATATATATATA	intron_variant intron_variant	MODIFIER	HG01884.hp2 HG01884.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0098 a0001c0001t0001g0098	1	280	0.0036	38	c.-19 others(59): Show c.-196-32535_-196-32534insTTATATATATATATATATATATAT ATATATATATATAT	LRFN5	ENSG00000165379.14	transcript	ENST00000298119.9	protein_coding	1/5		INFO_REALIGN_3_PRIME	chr14	TogoVar
LRFN5_chr14_41601876_41909549	41734344	A A	ATATATAT others(31): Show ATATATATATATATATATATATATATATATATATATATT	intron_variant intron_variant	MODIFIER	HG00140.hp1 HG02602.hp1 NA18947.hp1 others(2): Show HG00140.hp1 HG02602.hp1 NA18947.hp1 NA18959.hp2 NA18974.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0001 a0001c0001t0007 a0001c0002t0003 a0001c0001t0001 a0001c0001t0007 a0001c0002t0003	a0001c0001t0001g0116 a0001c0001t0007g0117 a0001c0002t0003g0228 others(2): Show a0001c0001t0001g0116 a0001c0001t0007g0117 a0001c0002t0003g0228 a0001c0002t0003g0229 a0001c0002t0003g0258	5	280	0.0179	38	c.-19 others(59): Show c.-196-32509_-196-32508insATATATATATATATATATATATAT ATATATATATATTT	LRFN5	ENSG00000165379.14	transcript	ENST00000298119.9	protein_coding	1/5		INFO_REALIGN_3_PRIME	chr14	TogoVar
LRIT3_chr4_109843107_109877315	109850418	C C	CTTCTTTC others(31): Show CTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTT	intron_variant intron_variant	MODIFIER	NA18971.hp1 NA18971.hp1	a0004 a0004	a0004c0005 a0004c0005	a0004c0005t0006 a0004c0005t0006	a0004c0005t0006g0134 a0004c0005t0006g0134	1	332	0.0030	38	c.117 others(55): Show c.117-1086_117-1085insTTCTTTCTTTCTTTCTTTCTTTCTTTCT TTCTTTCTTT	LRIT3	ENSG00000183423.12	transcript	ENST00000594814.6	protein_coding	1/3			chr4	TogoVar
LRMDA_chr10_75426624_76565168	76240421	G G	GTATATAT others(31): Show GTATATATATGTTATATATAATATATACATGTTATATAT	intron_variant intron_variant	MODIFIER	HG02976.hp1 HG03098.hp1 NA19240.hp1 HG02976.hp1 HG03098.hp1 NA19240.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0002 a0001c0002t0002 a0001c0001t0002 a0001c0002t0002	a0001c0001t0002g0027 a0001c0002t0002g0019 a0001c0002t0002g0036 a0001c0001t0002g0027 a0001c0002t0002g0019 a0001c0002t0002g0036	3	46	0.0652	38	c.517 others(57): Show c.517-83963_517-83926dupATAATATATACATGTTATATATTATA TATATGTTATAT	LRMDA	ENSG00000148655.16	transcript	ENST00000611255.5	protein_coding	5/6		INFO_REALIGN_3_PRIME	chr10	TogoVar
LRP11_chr6_149813757_149869359	149859396	A A	ATATATAT others(31): Show ATATATATATATATATATATATATATATATATTTTTTTT	intron_variant intron_variant	MODIFIER	HG04184.hp2 HG04184.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0145 a0001c0001t0001g0145	1	334	0.0030	38	c.613 others(55): Show c.613+4011_613+4012insAAAAAAAATATATATATATATATATATA TATATATATA	LRP11	ENSG00000120256.11	transcript	ENST00000239367.7	protein_coding	1/6			chr6	TogoVar
LRP12_chr8_104484236_104594258	104542994	A A	AATATAAA others(31): Show AATATAAATATATATATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG02922.hp1 NA19043.hp1 HG02922.hp1 NA19043.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0014 a0001c0002t0014	a0001c0002t0014g0011 a0001c0002t0014g0014 a0001c0002t0014g0011 a0001c0002t0014g0014	2	318	0.0063	38	c.80- others(55): Show c.80-11032_80-11031insATATATATATATATATATATATATATAT ATATTTATAT	LRP12	ENSG00000147650.12	transcript	ENST00000276654.10	protein_coding	1/6			chr8	TogoVar
LRP1B_chr2_140226423_142136016	141032826	C C	CATACATA others(31): Show CATACATACATATATATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG02630.hp1 HG02965.hp2 HG03225.hp1 HG02630.hp1 HG02965.hp2 HG03225.hp1	a0001 a0003 a0001 a0003	a0001c0010 a0001c0025 a0003c0021 a0001c0010 a0001c0025 a0003c0021	a0001c0010t0011 a0001c0025t0005 a0003c0021t0001 a0001c0010t0011 a0001c0025t0005 a0003c0021t0001	a0001c0010t0011g0028 a0001c0025t0005g0018 a0003c0021t0001g0026 a0001c0010t0011g0028 a0001c0025t0005g0018 a0003c0021t0001g0026	3	28	0.1071	38	c.179 others(59): Show c.1790-12725_1790-12724insATATATATATATATATATATATAT ATATATGTATGTAT	LRP1B	ENSG00000168702.18	transcript	ENST00000389484.8	protein_coding	11/90			chr2	TogoVar
LRP1B_chr2_140226423_142136016	141544296	C C	CTCTTCTT others(31): Show CTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTTTCTTCT	intron_variant intron_variant	MODIFIER	HG02630.hp1 HG02630.hp1	a0001 a0001	a0001c0010 a0001c0010	a0001c0010t0011 a0001c0010t0011	a0001c0010t0011g0028 a0001c0010t0011g0028	1	28	0.0357	38	c.206 others(57): Show c.206-63764_206-63763insAGAAGAAAAGAAGAAGAAGAAGAAGA AGAAGAAGAAGA	LRP1B	ENSG00000168702.18	transcript	ENST00000389484.8	protein_coding	2/90			chr2	TogoVar

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