Joint Open Genome and Omics Platform (JoGo)

Search by Variant

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Chr

Chromosome name (e.g., chr11).

Snpeff genename

Exact SnpEff gene name.

Sampleids

Target sampleid (e.g. HG02615).

Snpeff haplotype class

Haplotype-annotation class (e.g., ahapid, ahapid+chapid).

Snpeff annotation impact

Exact impact level (e.g., HIGH, MODERATE, LOW).

Snpeff annotation impact detail

Keyword match in SnpEff annotation.

Hapid

One or more haplotype IDs (comma-separated; e.g., a0001, a01, a0001c0001, a01c02, a1c2, a0001c0001t0005, a0001c0001t0005g0018).

Samplehapid

Sample haplotype IDs to include (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

No_hapid

Haplotype IDs to exclude (comma-separated; e.g., a0001, a0002, a0001c0001, a0001c0001t0005, a1, a01).

No_samplehapid

Sample haplotype IDs to exclude (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

Start

Start position (GRCh38).

End

End position (GRCh38).

Minac

Minimum alternate allele count (≥).

Maxac

Maximum alternate allele count (≤).

Minlen

Minimum variant length (≥).

Maxlen

Maximum variant length (≤).

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regionname	pos	ref	alt	annotation	impact	samples	ahapids	achapids	acthapids	actghapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	external
OCA2_chr15_27749875_28104315	27824602	C C	CTCTCTCT others(31): Show CTCTCTCTCTCTCTCTCTCTATATATATATATATATATA	intron_variant intron_variant	MODIFIER	HG00558.hp2 HG00558.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0103 a0001c0001t0003g0103	1	110	0.0091	38	c.243 others(59): Show c.2432+20356_2432+20357insTATATATATATATATATATAGAGA GAGAGAGAGAGAGA	OCA2	ENSG00000104044.16	transcript	ENST00000354638.8	protein_coding	23/23			chr15	TogoVar
OCA2_chr15_27749875_28104315	27824602	C C	CTCTCTCT others(31): Show CTCTCTCTCTCTCTCTCTCTCTATATATATATATATATA	intron_variant intron_variant	MODIFIER	HG02735.hp1 HG02735.hp1	a0001 a0001	a0001c0004 a0001c0004	a0001c0004t0004 a0001c0004t0004	a0001c0004t0004g0046 a0001c0004t0004g0046	1	110	0.0091	38	c.243 others(59): Show c.2432+20356_2432+20357insTATATATATATATATATAGAGAGA GAGAGAGAGAGAGA	OCA2	ENSG00000104044.16	transcript	ENST00000354638.8	protein_coding	23/23			chr15	TogoVar
OCEL1_chr19_17221226_17234219	17225459	C C	CTCTCTCT others(31): Show CTCTCTCTCTCTATATATATATATATATATATATATATA	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02622.hp1 HG02622.hp1	a0002 a0002	a0002c0003 a0002c0003	a0002c0003t0001 a0002c0003t0001	a0002c0003t0001g0002 a0002c0003t0001g0002	1	444	0.0023	38	c.-78 others(47): Show c.-789_-788insTCTCTCTCTCTATATATATATATATATATATATATA TA	OCEL1	ENSG00000099330.9	transcript	ENST00000215061.9	protein_coding		766		chr19	TogoVar
OCEL1_chr19_17221226_17234219	17225459	C C	CTCTCTCT others(31): Show CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTATATATATA	upstream_gene_variant upstream_gene_variant	MODIFIER	HG03486.hp2 NA20805.hp2 HG03486.hp2 NA20805.hp2	a0002 a0002	a0002c0003 a0002c0003	a0002c0003t0001 a0002c0003t0001	a0002c0003t0001g0002 a0002c0003t0001g0002	2	444	0.0045	38	c.-78 others(47): Show c.-789_-788insTCTCTCTCTCTCTCTCTCTCTCTCTCTCTATATATA TA	OCEL1	ENSG00000099330.9	transcript	ENST00000215061.9	protein_coding		766		chr19	TogoVar
OCEL1_chr19_17221226_17234219	17225459	C C	CTCTCTCT others(31): Show CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTATATATA	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00741.hp2 HG00741.hp2	a0002 a0002	a0002c0003 a0002c0003	a0002c0003t0001 a0002c0003t0001	a0002c0003t0001g0029 a0002c0003t0001g0029	1	444	0.0023	38	c.-78 others(47): Show c.-789_-788insTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTATATA TA	OCEL1	ENSG00000099330.9	transcript	ENST00000215061.9	protein_coding		766		chr19	TogoVar
OCEL1_chr19_17221226_17234219	17225459	C C	CTCTCTCT others(31): Show CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTATATA	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02738.hp2 HG03942.hp2 HG02738.hp2 HG03942.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0002c0003 a0001c0001 a0002c0003	a0001c0001t0001 a0002c0003t0001 a0001c0001t0001 a0002c0003t0001	a0001c0001t0001g0025 a0002c0003t0001g0002 a0001c0001t0001g0025 a0002c0003t0001g0002	2	444	0.0045	38	c.-78 others(47): Show c.-789_-788insTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTATA TA	OCEL1	ENSG00000099330.9	transcript	ENST00000215061.9	protein_coding		766		chr19	TogoVar
OCEL1_chr19_17221226_17234219	17225459	C C	CTCTCTCT others(31): Show CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTATA	upstream_gene_variant upstream_gene_variant	MODIFIER	HG03130.hp2 HG06807.hp1 HG03130.hp2 HG06807.hp1	a0002 a0002	a0002c0003 a0002c0003	a0002c0003t0001 a0002c0003t0001	a0002c0003t0001g0002 a0002c0003t0001g0028 a0002c0003t0001g0002 a0002c0003t0001g0028	2	444	0.0045	38	c.-78 others(47): Show c.-789_-788insTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTA TA	OCEL1	ENSG00000099330.9	transcript	ENST00000215061.9	protein_coding		766		chr19	TogoVar
ODF2_chr9_128451006_128506292	128470018	A A	AAAAAAAA others(31): Show AAAAAAAATATATATATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	NA18991.hp2 NA19058.hp1 NA18991.hp2 NA19058.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0207 a0001c0001t0001g0273 a0001c0001t0001g0207 a0001c0001t0001g0273	2	346	0.0058	38	c.669 others(53): Show c.669+666_669+667insAAAAAATATATATATATATATATATATATA TATATATA	ODF2	ENSG00000136811.17	transcript	ENST00000351030.8	protein_coding	5/20		INFO_REALIGN_3_PRIME	chr9	TogoVar
ODF2_chr9_128451006_128506292	128470050	T T	TATATATA others(31): Show TATATATATATATATATATATAAATATATATATATATAA	intron_variant intron_variant	MODIFIER	NA19060.hp1 NA19060.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0241 a0001c0001t0001g0241	1	346	0.0029	38	c.669 others(53): Show c.669+698_669+699insTATATATATATATATATATAAATATATATA TATATAAA	ODF2	ENSG00000136811.17	transcript	ENST00000351030.8	protein_coding	5/20		INFO_REALIGN_3_PRIME	chr9	TogoVar
ODF3_chr11_191761_205258	196045	A A	AGGACATG others(31): Show AGGACATGGGGGGGACCTTGGTGAGGGGACCTGGTGAGG	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00323.hp2 HG00438.hp1 HG00558.hp1 others(17): Show HG00323.hp2 HG00438.hp1 HG00558.hp1 HG00741.hp2 HG01175.hp1 HG01516.hp2 HG02015.hp1 HG02258.hp2 HG02602.hp1 HG03490.hp1 HG04184.hp1 HG06807.hp1 NA18964.hp1 NA18971.hp2 NA18972.hp1 NA18977.hp1 NA18982.hp1 NA18999.hp1 NA19002.hp1 NA19055.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0001 a0001c0001t0001g0009 a0001c0001t0001g0001 a0001c0001t0001g0009	20	388	0.0516	38	c.-10 others(49): Show c.-1010_-1009insGGACATGGGGGGGACCTTGGTGAGGGGACCTGGT GAGG	ODF3	ENSG00000177947.15	transcript	ENST00000325113.9	protein_coding		715		chr11	TogoVar
OLFM1_chr9_135082668_135126180	135124684	G G	GAAGAAAG others(31): Show GAAGAAAGAAGAAAGAAAGAAAGAAGAAAGAAAGAAAGA	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01891.hp2 HG03130.hp1 HG01891.hp2 HG03130.hp1	a0001 a0001	a0001c0001 a0001c0003 a0001c0001 a0001c0003	a0001c0001t0007 a0001c0003t0004 a0001c0001t0007 a0001c0003t0004	a0001c0001t0007g0003 a0001c0003t0004g0298 a0001c0001t0007g0003 a0001c0003t0004g0298	2	360	0.0056	38	c.45 others(49): Show c.4506_*4507insAAGAAAGAAGAAAGAAAGAAAGAAGAAAGAAAGA AAGA	OLFM1	ENSG00000130558.20	transcript	ENST00000371793.8	protein_coding		3505		chr9	TogoVar
OMA1_chr1_58475719_58551726	58496158	A A	ATTTTTTT others(31): Show ATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG00408.hp1 HG00408.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0161 a0001c0001t0001g0161	1	384	0.0026	38	c.136 others(57): Show c.1365+9901_1365+9902insAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAA	OMA1	ENSG00000162600.12	transcript	ENST00000371226.8	protein_coding	8/8			chr1	TogoVar
OMA1_chr1_58475719_58551726	58518266	G G	GGGAGAGG others(31): Show GGGAGAGGGGAGAGGGGAGAGGGGAGAGGAGAGAGGAGA	intron_variant intron_variant	MODIFIER	HG01358.hp2 HG01516.hp2 HG01517.hp1 others(3): Show HG01358.hp2 HG01516.hp2 HG01517.hp1 HG02027.hp2 HG04204.hp2 NA18949.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0291 a0001c0001t0001g0293 a0001c0001t0001g0294 others(3): Show a0001c0001t0001g0291 a0001c0001t0001g0293 a0001c0001t0001g0294 a0001c0001t0001g0314 a0001c0001t0001g0324 a0001c0001t0001g0328	6	384	0.0156	38	c.121 others(57): Show c.1215+8994_1215+8995insTCTCCTCTCTCCTCTCCCCTCTCCCC TCTCCCCTCTCC	OMA1	ENSG00000162600.12	transcript	ENST00000371226.8	protein_coding	7/8			chr1	TogoVar
OPA1_chr3_193588208_193702811	193596407	T T	TTTCTTTT others(31): Show TTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTC	intron_variant intron_variant	MODIFIER	HG00735.hp2 HG02135.hp1 HG02293.hp1 others(9): Show HG00735.hp2 HG02135.hp1 HG02293.hp1 HG03490.hp2 HG03492.hp1 HG03710.hp1 HG03942.hp1 NA18940.hp1 NA18953.hp2 NA18977.hp2 NA18983.hp1 NA19091.hp1	a0002 a0002	a0002c0002 a0002c0007 a0002c0002 a0002c0007	a0002c0002t0001 a0002c0002t0006 a0002c0007t0001 a0002c0002t0001 a0002c0002t0006 a0002c0007t0001	a0002c0002t0001g0003 a0002c0002t0001g0165 a0002c0002t0001g0202 others(8): Show a0002c0002t0001g0003 a0002c0002t0001g0165 a0002c0002t0001g0202 a0002c0002t0001g0204 a0002c0002t0001g0206 a0002c0002t0001g0207 a0002c0002t0001g0246 a0002c0002t0001g0247 a0002c0002t0006g0238 a0002c0007t0001g0203 a0002c0007t0001g0205	12	388	0.0309	38	c.32+ others(53): Show c.32+3014_32+3015insTCTTTTCTTTTCTTTTCTTTTCTTCTTTTC TTTTCTTT	OPA1	ENSG00000198836.11	transcript	ENST00000361510.8	protein_coding	1/30		INFO_REALIGN_3_PRIME	chr3	TogoVar
OPCML_chr11_132409981_133537501	133116805	C C	CATACATA others(31): Show CATACATATATATATATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG02615.hp1 HG02965.hp1 HG02976.hp2 others(1): Show HG02615.hp1 HG02965.hp1 HG02976.hp2 HG03041.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0023 a0001c0001t0025 a0001c0001t0001 a0001c0001t0023 a0001c0001t0025	a0001c0001t0001g0034 a0001c0001t0001g0049 a0001c0001t0023g0039 others(1): Show a0001c0001t0001g0034 a0001c0001t0001g0049 a0001c0001t0023g0039 a0001c0001t0025g0054	4	68	0.0588	38	c.62- others(57): Show c.62-173796_62-173795insATATATATATATATATATATATATAT ATATATATGTAT	OPCML	ENSG00000183715.15	transcript	ENST00000524381.6	protein_coding	1/7			chr11	TogoVar
OPCML_chr11_132409981_133537501	133373448	T T	TATATATA others(31): Show TATATATATATATATATATATATATATATATACACACAC	intron_variant intron_variant	MODIFIER	HG00642.hp2 HG00642.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0009 a0001c0001t0009	a0001c0001t0009g0060 a0001c0001t0009g0060	1	68	0.0147	38	c.61+ others(57): Show c.61+158815_61+158816insGTGTGTGTATATATATATATATATAT ATATATATATAT	OPCML	ENSG00000183715.15	transcript	ENST00000524381.6	protein_coding	1/7			chr11	TogoVar
OPCML_chr11_132409981_133537501	133458884	C C	CATATGTG others(31): Show CATATGTGTGTGTATATATACACACACATACACACACAT	intron_variant intron_variant	MODIFIER	HG03209.hp2 HG03209.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0028 a0001c0001t0001g0028	1	68	0.0147	38	c.61+ others(55): Show c.61+73379_61+73380insATGTGTGTGTATGTGTGTGTATATATAC ACACACATAT	OPCML	ENSG00000183715.15	transcript	ENST00000524381.6	protein_coding	1/7			chr11	TogoVar
OPHN1_chrX_68037344_68438495	68038102	G G	GAAAGAAA others(31): Show GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00673.hp1 HG00673.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0047 a0001c0001t0002g0047	1	155	0.0065	38	c.90 others(49): Show c.9069_*9070insTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTT CTTT	OPHN1	ENSG00000079482.14	transcript	ENST00000355520.6	protein_coding		4241		chrX	TogoVar
OPHN1_chrX_68037344_68438495	68125954	T T	TATATATA others(31): Show TATATATATATATATATATATATATATATATATATATAC	intron_variant intron_variant	MODIFIER	NA19000.hp1 NA19000.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0024 a0001c0001t0024	a0001c0001t0024g0007 a0001c0001t0024g0007	1	155	0.0065	38	c.127 others(57): Show c.1277-6623_1277-6622insGTATATATATATATATATATATATAT ATATATATATAT	OPHN1	ENSG00000079482.14	transcript	ENST00000355520.6	protein_coding	15/24			chrX	TogoVar
OPHN1_chrX_68037344_68438495	68370011	A A	AATATATA others(31): Show AATATATATATATATATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG00642.hp1 HG02258.hp1 HG02976.hp1 HG00642.hp1 HG02258.hp1 HG02976.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0003 a0001c0001t0005 a0001c0001t0001 a0001c0001t0003 a0001c0001t0005	a0001c0001t0001g0071 a0001c0001t0003g0139 a0001c0001t0005g0138 a0001c0001t0001g0071 a0001c0001t0003g0139 a0001c0001t0005g0138	3	155	0.0194	38	c.154 others(57): Show c.154+62855_154+62856insATATATATATATATATATATATATAT ATATATATATAT	OPHN1	ENSG00000079482.14	transcript	ENST00000355520.6	protein_coding	2/24			chrX	TogoVar
OPHN1_chrX_68037344_68438495	68426569	T T	TATATATA others(31): Show TATATATATATATATATATATATATATATATATATATAA	intron_variant intron_variant	MODIFIER	HG02055.hp1 HG02257.hp1 HG02723.hp1 others(2): Show HG02055.hp1 HG02257.hp1 HG02723.hp1 HG03492.hp1 NA18962.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0004 a0001c0001t0008 others(1): Show a0001c0001t0003 a0001c0001t0004 a0001c0001t0008 a0001c0001t0029	a0001c0001t0003g0081 a0001c0001t0003g0101 a0001c0001t0004g0034 others(2): Show a0001c0001t0003g0081 a0001c0001t0003g0101 a0001c0001t0004g0034 a0001c0001t0008g0096 a0001c0001t0029g0031	5	155	0.0323	38	c.154 others(55): Show c.154+6297_154+6298insTTATATATATATATATATATATATATAT ATATATATAT	OPHN1	ENSG00000079482.14	transcript	ENST00000355520.6	protein_coding	2/24			chrX	TogoVar
OPN5_chr6_47777032_47831381	47819336	A A	AATATATA others(31): Show AATATATATATATATATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG00423.hp1 HG00597.hp2 HG01257.hp1 others(14): Show HG00423.hp1 HG00597.hp2 HG01257.hp1 HG01261.hp1 HG01433.hp2 HG01496.hp1 HG02027.hp1 HG02074.hp2 HG02300.hp1 HG02523.hp2 HG03710.hp1 NA18941.hp1 NA18956.hp1 NA18979.hp1 NA18979.hp2 NA18988.hp1 NA19088.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0004 a0001c0001t0015 a0001c0001t0001 a0001c0001t0004 a0001c0001t0015	a0001c0001t0001g0022 a0001c0001t0001g0103 a0001c0001t0001g0148 others(13): Show a0001c0001t0001g0022 a0001c0001t0001g0103 a0001c0001t0001g0148 a0001c0001t0001g0173 a0001c0001t0001g0192 a0001c0001t0001g0232 a0001c0001t0001g0235 a0001c0001t0001g0243 a0001c0001t0001g0254 a0001c0001t0001g0279 a0001c0001t0004g0014 a0001c0001t0004g0202 a0001c0001t0004g0204 a0001c0001t0004g0238 a0001c0001t0004g0245 a0001c0001t0015g0164	17	322	0.0528	38	c.105 others(57): Show c.1057-4630_1057-4629insTATATATATATATATATATATATATA TATATATATATA	OPN5	ENSG00000124818.16	transcript	ENST00000371211.7	protein_coding	6/6		INFO_REALIGN_3_PRIME	chr6	TogoVar
OPN5_chr6_47777032_47831381	47831184	T T	TCTCTTCC others(31): Show TCTCTTCCTCTCTCCTTTCTTTCTTTCTTTCTTTCTTTC	downstream_gene_variant downstream_gene_variant	MODIFIER	NA18945.hp1 NA18945.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0218 a0001c0001t0001g0218	1	322	0.0031	38	c.71 others(49): Show c.7193_*7194insCTCTTCCTCTCTCCTTTCTTTCTTTCTTTCTTTC TTTC	OPN5	ENSG00000124818.16	transcript	ENST00000371211.7	protein_coding		4804		chr6	TogoVar
OPRL1_chr20_64075082_64105633	64104917	G G	GGGGAGCA others(31): Show GGGGAGCACAGGCCATGGAGAGGACCGTCAGACACAGCA	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01433.hp1 HG01433.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0045 a0001c0001t0003g0045	1	66	0.0152	38	c.61 others(49): Show c.6118_*6119insGGGAGCACAGGCCATGGAGAGGACCGTCAGACAC AGCA	OPRL1	ENSG00000125510.18	transcript	ENST00000336866.7	protein_coding		4285		chr20	TogoVar
OPTN_chr10_13095163_13143308	13114800	A A	AATTATAT others(31): Show AATTATATAATTATATATACGTATATATAATTATATAAT	intron_variant intron_variant	MODIFIER	HG02523.hp2 NA18944.hp2 HG02523.hp2 NA18944.hp2	a0002 a0002	a0002c0003 a0002c0003	a0002c0003t0001 a0002c0003t0001	a0002c0003t0001g0144 a0002c0003t0001g0145 a0002c0003t0001g0144 a0002c0003t0001g0145	2	418	0.0048	38	c.553 others(55): Show c.553-1467_553-1466insATTATATAATTATATATACGTATATATA ATTATATAAT	OPTN	ENSG00000123240.17	transcript	ENST00000378747.8	protein_coding	5/14			chr10	TogoVar
OR10A6_chr11_7919592_7936268	7929966	G G	GTATATAT others(31): Show GTATATATATGTATATATATATATATATATATATATATA	5_prime_UTR_variant 5_prime_UTR_variant	MODIFIER	HG02015.hp2 HG02074.hp2 HG02015.hp2 HG02074.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0209 a0002c0002t0210 a0002c0002t0209 a0002c0002t0210	a0002c0002t0209g0164 a0002c0002t0210g0165 a0002c0002t0209g0164 a0002c0002t0210g0165	2	441	0.0045	38	c.-13 others(49): Show c.-1305_-1304insTATATATATATATATATATATATATATACATATA TATA	OR10A6	ENSG00000279000.4	transcript	ENST00000641238.1	protein_coding	4/4	1305		chr11	TogoVar
OR10A6_chr11_7919592_7936268	7932670	A A	ATAAGATA others(31): Show ATAAGATATAGAACACTTTCATCTCATTAACTCTATATT	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01257.hp1 HG01257.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0149 a0001c0001t0149	a0001c0001t0149g0100 a0001c0001t0149g0100	1	441	0.0023	38	c.-33 others(49): Show c.-3384_-3383insAATATAGAGTTAATGAGATGAAAGTGTTCTATAT CTTA	OR10A6	ENSG00000279000.4	transcript	ENST00000641238.1	protein_coding		1403		chr11	TogoVar
OR10G2_chr14_21628836_21639940	21632406	T T	TCCAAAAA others(31): Show TCCAAAAAAAAAAAAAAAAAAAAATCACAGCAAATAAAA	downstream_gene_variant downstream_gene_variant	MODIFIER	NA19010.hp1 NA19010.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0000 a0001c0001t0001g0000	1	474	0.0021	38	c.15 others(49): Show c.1503_*1504insTTTTATTTGCTGTGATTTTTTTTTTTTTTTTTTT TTGG	OR10G2	ENSG00000255582.1	transcript	ENST00000542433.1	protein_coding		1429		chr14	TogoVar
OR10G7_chr11_124031013_124046325	124033057	C C	CTCTCTCT others(31): Show CTCTCTCTCTCTATATATATATATATATATATATATATA	downstream_gene_variant downstream_gene_variant	MODIFIER	NA19055.hp2 NA19055.hp2	a0004 a0004	a0004c0004 a0004c0004	a0004c0004t0002 a0004c0004t0002	a0004c0004t0002g0004 a0004c0004t0002g0004	1	482	0.0021	38	c.50 others(49): Show c.5008_*5009insTATATATATATATATATATATATATATAGAGAGA GAGA	OR10G7	ENSG00000182634.9	transcript	ENST00000641585.1	protein_coding		2955		chr11	TogoVar
OR10G8_chr11_124021798_124035634	124033057	C C	CTCTCTCT others(31): Show CTCTCTCTCTCTATATATATATATATATATATATATATA	downstream_gene_variant downstream_gene_variant	MODIFIER	NA19055.hp1 NA19055.hp1	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0001 a0002c0002t0001	a0002c0002t0001g0003 a0002c0002t0001g0003	1	446	0.0022	38	c.24 others(49): Show c.2499_*2500insTCTCTCTCTCTATATATATATATATATATATATA TATA	OR10G8	ENSG00000234560.5	transcript	ENST00000641224.2	protein_coding		2424		chr11	TogoVar
OR10H1_chr19_15799549_15820664	15801375	A A	AATATATA others(31): Show AATATATATATATATATATATATATATATATATATATAT	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01169.hp1 HG01243.hp2 HG03704.hp1 others(9): Show HG01169.hp1 HG01243.hp2 HG03704.hp1 HG04199.hp2 NA18944.hp1 NA18957.hp2 NA18959.hp1 NA18971.hp1 NA18972.hp2 NA18987.hp2 NA19000.hp1 NA19070.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0001 a0001c0001t0016 a0001c0002t0001 a0001c0001t0001 a0001c0001t0016 a0001c0002t0001	a0001c0001t0001g0069 a0001c0001t0016g0078 a0001c0002t0001g0001 others(8): Show a0001c0001t0001g0069 a0001c0001t0016g0078 a0001c0002t0001g0001 a0001c0002t0001g0007 a0001c0002t0001g0030 a0001c0002t0001g0034 a0001c0002t0001g0065 a0001c0002t0001g0066 a0001c0002t0001g0074 a0001c0002t0001g0096 a0001c0002t0001g0098	12	398	0.0302	38	c.57 others(49): Show c.5705_*5706insATATATATATATATATATATATATATATATATAT ATAT	OR10H1	ENSG00000186723.4	transcript	ENST00000641419.1	protein_coding		3173		chr19	TogoVar
OR10H5_chr19_15782661_15805357	15801375	A A	AATATATA others(31): Show AATATATATATATATATATATATATATATATATATATAT	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01169.hp1 HG01243.hp1 HG03704.hp1 others(7): Show HG01169.hp1 HG01243.hp1 HG03704.hp1 HG04199.hp2 NA18944.hp1 NA18959.hp1 NA18971.hp1 NA18972.hp1 NA19000.hp1 NA19070.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0003 a0001c0002t0009 a0001c0002t0013 others(6): Show a0001c0002t0003 a0001c0002t0009 a0001c0002t0013 a0001c0002t0029 a0001c0002t0040 a0001c0002t0093 a0001c0002t0095 a0001c0002t0102 a0001c0002t0111	a0001c0002t0003g0002 a0001c0002t0009g0002 a0001c0002t0013g0013 others(6): Show a0001c0002t0003g0002 a0001c0002t0009g0002 a0001c0002t0013g0013 a0001c0002t0029g0002 a0001c0002t0040g0023 a0001c0002t0093g0021 a0001c0002t0095g0002 a0001c0002t0102g0002 a0001c0002t0111g0002	10	396	0.0253	38	c.63 others(49): Show c.6379_*6380insATATATATATATATATATATATATATATATATAT ATAT	OR10H5	ENSG00000172519.10	transcript	ENST00000642092.2	protein_coding		1019		chr19	TogoVar
OR10R2_chr1_158467220_158485936	158473765	T T	TTCCTTCT others(31): Show TTCCTTCTTCCTTCCTTCCTTCCTTCCTCCCTCCCTCCC	intron_variant intron_variant	MODIFIER	HG02809.hp1 HG02922.hp1 HG03209.hp2 others(1): Show HG02809.hp1 HG02922.hp1 HG03209.hp2 HG03453.hp1	a0008 a0008	a0008c0008 a0008c0008	a0008c0008t0001 a0008c0008t0001	a0008c0008t0001g0024 a0008c0008t0001g0024	4	446	0.0090	38	c.27+ others(53): Show c.27+1419_27+1420insTTCCTTCCTTCCTTCCTTCCTCCCTCCCTC CCTCCTTC	OR10R2	ENSG00000198965.5	transcript	ENST00000641067.1	protein_coding	1/1		INFO_REALIGN_3_PRIME	chr1	TogoVar
OR13D1_chr9_104689518_104700462	104696107	A A	AAGAAAGA others(31): Show AAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01978.hp1 NA18944.hp1 NA18944.hp2 others(1): Show HG01978.hp1 NA18944.hp1 NA18944.hp2 NA19062.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0002c0002 a0001c0001 a0002c0002	a0001c0001t0000 a0002c0002t0000 a0001c0001t0000 a0002c0002t0000	a0001c0001t0000g0000 a0002c0002t0000g0000 a0001c0001t0000g0000 a0002c0002t0000g0000	4	396	0.0101	38	c.64 others(47): Show c.645_*646insAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA AG	OR13D1	ENSG00000179055.8	transcript	ENST00000641530.1	protein_coding		646		chr9	TogoVar
OR1E1_chr17_3392104_3403410	3399258	G G	GAAGGAGG others(31): Show GAAGGAGGAAGGAAGGAAGGAGGAAAGGAAAGGAAAGGA	upstream_gene_variant upstream_gene_variant	MODIFIER	NA18983.hp2 NA18983.hp2	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0001 a0001c0003t0001	a0001c0003t0001g0000 a0001c0003t0001g0000	1	380	0.0026	38	c.-84 others(47): Show c.-849_-848insTCCTTTCCTTTCCTTTCCTCCTTCCTTCCTTCCTCC TT	OR1E1	ENSG00000180016.2	transcript	ENST00000322608.2	protein_coding		849		chr17	TogoVar
OR1E1_chr17_3392104_3403410	3399273	A A	AAAGGAAA others(31): Show AAAGGAAAGGAAAGGAAAGGAAAGGAAGAAGAAAGAAAG	upstream_gene_variant upstream_gene_variant	MODIFIER	NA19062.hp1 NA19062.hp1	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0001 a0001c0003t0001	a0001c0003t0001g0000 a0001c0003t0001g0000	1	380	0.0026	38	c.-86 others(47): Show c.-864_-863insCTTTCTTTCTTCTTCCTTTCCTTTCCTTTCCTTTCC TT	OR1E1	ENSG00000180016.2	transcript	ENST00000322608.2	protein_coding		864		chr17	TogoVar
OR1F1_chr16_3183204_3211556	3188050	G G	GAAAAGAA others(31): Show GAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAA	upstream_gene_variant upstream_gene_variant	MODIFIER	NA18944.hp2 NA18944.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0235 a0001c0001t0003g0235	1	328	0.0031	38	c.-59 others(47): Show c.-592_-591insAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGA AA	OR1F1	ENSG00000168124.3	transcript	ENST00000304646.3	protein_coding		153		chr16	TogoVar
OR1F1_chr16_3183204_3211556	3188054	A A	AGAAAAGA others(31): Show AGAAAAGAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAG	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01169.hp2 HG01255.hp1 HG02615.hp1 others(7): Show HG01169.hp2 HG01255.hp1 HG02615.hp1 HG02622.hp1 HG02630.hp2 HG02698.hp1 HG02886.hp1 NA18982.hp1 NA19240.hp2 NA20129.hp1	a0001 a0002 a0004 others(1): Show a0001 a0002 a0004 a0005	a0001c0001 a0002c0002 a0002c0009 others(2): Show a0001c0001 a0002c0002 a0002c0009 a0004c0004 a0005c0005	a0001c0001t0002 a0001c0001t0003 a0001c0001t0010 others(4): Show a0001c0001t0002 a0001c0001t0003 a0001c0001t0010 a0002c0002t0001 a0002c0009t0022 a0004c0004t0003 a0005c0005t0003	a0001c0001t0002g0266 a0001c0001t0003g0220 a0001c0001t0010g0204 others(7): Show a0001c0001t0002g0266 a0001c0001t0003g0220 a0001c0001t0010g0204 a0002c0002t0001g0029 a0002c0002t0001g0267 a0002c0009t0022g0199 a0004c0004t0003g0250 a0005c0005t0003g0201 a0005c0005t0003g0202 a0005c0005t0003g0229	10	328	0.0305	38	c.-58 others(47): Show c.-588_-587insGAAAAGAAAAGAAAAAAAAAAAAAAAAAAAAAAAAA AG	OR1F1	ENSG00000168124.3	transcript	ENST00000304646.3	protein_coding		149		chr16	TogoVar
OR1L3_chr9_122670130_122681104	122670871	A A	AGGAAGGA others(31): Show AGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAAGGGAG	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02615.hp2 HG02717.hp1 HG03098.hp2 HG02615.hp2 HG02717.hp1 HG03098.hp2	a0001 a0003 a0001 a0003	a0001c0001 a0003c0003 a0001c0001 a0003c0003	a0001c0001t0000 a0003c0003t0000 a0001c0001t0000 a0003c0003t0000	a0001c0001t0000g0000 a0003c0003t0000g0000 a0001c0001t0000g0000 a0003c0003t0000g0000	3	380	0.0079	38	c.-42 others(49): Show c.-4259_-4258insGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAAG GGAG	OR1L3	ENSG00000171481.5	transcript	ENST00000304820.5	protein_coding		4258		chr9	TogoVar
OR2B2_chr6_27906185_27917396	27915297	T T	TTATATAT others(31): Show TTATATATATATATATATATATATATATATATATATATA	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00639.hp1 HG01243.hp2 HG03041.hp2 others(10): Show HG00639.hp1 HG01243.hp2 HG03041.hp2 NA18940.hp1 NA18947.hp1 NA18962.hp2 NA18979.hp1 NA18982.hp1 NA19056.hp1 NA19058.hp1 NA19062.hp2 NA19081.hp2 NA19091.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0000 a0001c0001t0001g0000	13	398	0.0327	38	c.-29 others(49): Show c.-2979_-2978insTATATATATATATATATATATATATATATATATA TATA	OR2B2	ENSG00000168131.4	transcript	ENST00000303324.4	protein_coding		2902		chr6	TogoVar
OR2B2_chr6_27906185_27917396	27915309	A A	ATATATAT others(31): Show ATATATATATATATATATATATATATATATATATATATG	upstream_gene_variant upstream_gene_variant	MODIFIER	HG03540.hp2 HG03540.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0000 a0001c0001t0001g0000	1	398	0.0025	38	c.-29 others(49): Show c.-2991_-2990insCATATATATATATATATATATATATATATATATA TATA	OR2B2	ENSG00000168131.4	transcript	ENST00000303324.4	protein_coding		2914		chr6	TogoVar
OR2T34_chr1_248568801_248579757	248569909	T T	TAAAAAAA others(31): Show TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	downstream_gene_variant downstream_gene_variant	MODIFIER	NA19086.hp1 NA19086.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0000 a0001c0001t0000	a0001c0001t0000g0000 a0001c0001t0000g0000	1	314	0.0032	38	c.38 others(49): Show c.3891_*3892insTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT TTTT	OR2T34	ENSG00000183310.3	transcript	ENST00000328782.3	protein_coding		3891		chr1	TogoVar
OR4D10_chr11_59468315_59484361	59483771	T T	TCATATAT others(31): Show TCATATATATATATATATATATATATATATATATATATA	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02818.hp2 HG02818.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0002 a0002c0002t0002	a0002c0002t0002g0002 a0002c0002t0002g0002	1	430	0.0023	38	c.54 others(49): Show c.5406_*5407insCATATATATATATATATATATATATATATATATA TATA	OR4D10	ENSG00000254466.2	transcript	ENST00000530162.2	protein_coding		4411		chr11	TogoVar
OR4D10_chr11_59468315_59484361	59483771	T T	TTATATAT others(31): Show TTATATATATATATATATATATATATATATATATATATA	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00673.hp2 HG00733.hp1 HG01167.hp2 others(26): Show HG00673.hp2 HG00733.hp1 HG01167.hp2 HG01169.hp1 HG01257.hp1 HG01258.hp2 HG01361.hp1 HG01934.hp2 HG01993.hp1 HG02004.hp1 HG02080.hp1 HG02080.hp2 HG02258.hp2 HG02280.hp1 HG02300.hp2 HG02615.hp2 HG02622.hp2 HG03139.hp1 HG03492.hp1 HG03669.hp2 HG04199.hp1 HG06807.hp2 NA18946.hp1 NA18949.hp1 NA18952.hp2 NA18955.hp2 NA18991.hp2 NA18993.hp2 NA19081.hp2	a0001 a0002 a0005 a0001 a0002 a0005	a0001c0001 a0002c0002 a0005c0006 a0001c0001 a0002c0002 a0005c0006	a0001c0001t0001 a0001c0001t0002 a0001c0001t0004 others(2): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0004 a0002c0002t0002 a0005c0006t0002	a0001c0001t0001g0001 a0001c0001t0001g0003 a0001c0001t0001g0011 others(4): Show a0001c0001t0001g0001 a0001c0001t0001g0003 a0001c0001t0001g0011 a0001c0001t0002g0009 a0001c0001t0004g0008 a0002c0002t0002g0002 a0005c0006t0002g0002	29	430	0.0674	38	c.54 others(49): Show c.5406_*5407insTATATATATATATATATATATATATATATATATA TATA	OR4D10	ENSG00000254466.2	transcript	ENST00000530162.2	protein_coding		4411		chr11	TogoVar
OR4D10_chr11_59468315_59484361	59483788	T T	TATATATA others(31): Show TATATATATATATATATATATATATATATATATATATAA	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02258.hp1 HG03130.hp2 HG03195.hp2 others(2): Show HG02258.hp1 HG03130.hp2 HG03195.hp2 NA18950.hp2 NA19084.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0002c0002 a0001c0001 a0002c0002	a0001c0001t0001 a0001c0001t0004 a0002c0002t0002 a0001c0001t0001 a0001c0001t0004 a0002c0002t0002	a0001c0001t0001g0001 a0001c0001t0004g0008 a0002c0002t0002g0002 a0001c0001t0001g0001 a0001c0001t0004g0008 a0002c0002t0002g0002	5	430	0.0116	38	c.54 others(49): Show c.5423_*5424insATATATATATATATATATATATATATATATATAT ATAA	OR4D10	ENSG00000254466.2	transcript	ENST00000530162.2	protein_coding		4428		chr11	TogoVar
OR4F17_chr19_102104_118156	108020	T T	TTATATAT others(31): Show TTATATATTATAGAATATAATATATATTTTATTATAAAA	intron_variant intron_variant	MODIFIER	HG01261.hp1 HG01261.hp2 HG02572.hp2 others(3): Show HG01261.hp1 HG01261.hp2 HG02572.hp2 HG02818.hp1 NA19043.hp1 NA20129.hp2	a0001 a0006 a0001 a0006	a0001c0001 a0006c0009 a0001c0001 a0006c0009	a0001c0001t0001 a0006c0009t0001 a0001c0001t0001 a0006c0009t0001	a0001c0001t0001g0011 a0001c0001t0001g0019 a0006c0009t0001g0019 a0001c0001t0001g0011 a0001c0001t0001g0019 a0006c0009t0001g0019	6	227	0.0264	38	c.-55 others(53): Show c.-55+501_-55+538dupAAATATATATTATAGAATATAATATATATT TTATTATA	OR4F17	ENSG00000176695.8	transcript	ENST00000585993.3	protein_coding	2/2		INFO_REALIGN_3_PRIME	chr19	TogoVar
OR4F17_chr19_102104_118156	108020	T T	TTATATAT others(31): Show TTATATATTATAGAATATAATATATATTTTATTATATAA	intron_variant intron_variant	MODIFIER	HG01123.hp2 HG01123.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0040 a0001c0001t0001g0040	1	227	0.0044	38	c.-55 others(53): Show c.-55+500_-55+501insTAATATATATTATAGAATATAATATATATT TTATTATA	OR4F17	ENSG00000176695.8	transcript	ENST00000585993.3	protein_coding	2/2		INFO_REALIGN_3_PRIME	chr19	TogoVar
OR4F17_chr19_102104_118156	108020	T T	TTATATAT others(31): Show TTATATATTATATTATATAATATATATTTTATTATAAAA	intron_variant intron_variant	MODIFIER	HG02451.hp1 HG02451.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0053 a0001c0001t0001g0053	1	227	0.0044	38	c.-55 others(53): Show c.-55+476_-55+477insTTATATAATATATATTTTATTATAAAATAT ATATTATA	OR4F17	ENSG00000176695.8	transcript	ENST00000585993.3	protein_coding	2/2		INFO_REALIGN_3_PRIME	chr19	TogoVar
OR4F17_chr19_102104_118156	108056	A A	AAATATAT others(31): Show AAATATATATTATAGAATATAATATATATTTTATTATAT	intron_variant intron_variant	MODIFIER	HG00642.hp1 HG01256.hp2 HG01433.hp2 others(4): Show HG00642.hp1 HG01256.hp2 HG01433.hp2 HG03491.hp2 HG03834.hp1 NA19030.hp1 NA19087.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0014 a0001c0001t0001g0031 a0001c0001t0001g0043 others(2): Show a0001c0001t0001g0014 a0001c0001t0001g0031 a0001c0001t0001g0043 a0001c0001t0001g0048 a0001c0001t0001g0049	7	227	0.0308	38	c.-55 others(53): Show c.-55+531_-55+568dupTTATTATATAATATATATTATAGAATATAA TATATATT	OR4F17	ENSG00000176695.8	transcript	ENST00000585993.3	protein_coding	2/2		INFO_REALIGN_3_PRIME	chr19	TogoVar
OR4F17_chr19_102104_118156	108091	A A	ATAAAATA others(31): Show ATAAAATATATATTATAGAATATAATATATATTTTATTC	intron_variant intron_variant	MODIFIER	HG01978.hp1 HG02293.hp2 NA18986.hp1 HG01978.hp1 HG02293.hp2 NA18986.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0016 a0001c0001t0001g0016	3	227	0.0132	38	c.-55 others(53): Show c.-55+538_-55+539insAAATATATATTATAGAATATAATATATATT TTATTCTA	OR4F17	ENSG00000176695.8	transcript	ENST00000585993.3	protein_coding	2/2		INFO_REALIGN_3_PRIME	chr19	TogoVar

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