Joint Open Genome and Omics Platform (JoGo)

Search by Variant

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Chr

Chromosome name (e.g., chr11).

Snpeff genename

Exact SnpEff gene name.

Sampleids

Target sampleid (e.g. HG02615).

Snpeff haplotype class

Haplotype-annotation class (e.g., ahapid, ahapid+chapid).

Snpeff annotation impact

Exact impact level (e.g., HIGH, MODERATE, LOW).

Snpeff annotation impact detail

Keyword match in SnpEff annotation.

Hapid

One or more haplotype IDs (comma-separated; e.g., a0001, a01, a0001c0001, a01c02, a1c2, a0001c0001t0005, a0001c0001t0005g0018).

Samplehapid

Sample haplotype IDs to include (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

No_hapid

Haplotype IDs to exclude (comma-separated; e.g., a0001, a0002, a0001c0001, a0001c0001t0005, a1, a01).

No_samplehapid

Sample haplotype IDs to exclude (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

Start

Start position (GRCh38).

End

End position (GRCh38).

Minac

Minimum alternate allele count (≥).

Maxac

Maximum alternate allele count (≤).

Minlen

Minimum variant length (≥).

Maxlen

Maximum variant length (≤).

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regionname	pos	ref	alt	annotation	impact	samples	ahapids	achapids	acthapids	actghapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	external
FGF12_chr3_192134390_192732541	192158675	T T	TTCCTTCT others(32): Show TTCCTTCTTTCCTTCCTTCCTTCCTTCCCTCCCTCCCTCC	intron_variant intron_variant	MODIFIER	HG02145.hp1 HG02145.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0029 a0001c0001t0029	a0001c0001t0029g0004 a0001c0001t0029g0004	1	90	0.0111	39	c.427 others(58): Show c.427+11782_427+11783insGGAGGGAGGGAGGGAAGGAAGGAAGG AAGGAAAGAAGGA	FGF12	ENSG00000114279.15	transcript	ENST00000445105.7	protein_coding	5/5			chr3	TogoVar
FGF18_chr5_171414647_171462626	171461629	C C	CTTTCTTT others(32): Show CTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTT	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00609.hp1 HG00735.hp2 HG01255.hp1 others(4): Show HG00609.hp1 HG00735.hp2 HG01255.hp1 HG01257.hp1 NA19240.hp2 NA20129.hp2 NA20905.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0007 a0001c0001t0001 a0001c0001t0007	a0001c0001t0001g0019 a0001c0001t0001g0151 a0001c0001t0001g0160 others(4): Show a0001c0001t0001g0019 a0001c0001t0001g0151 a0001c0001t0001g0160 a0001c0001t0001g0193 a0001c0001t0001g0265 a0001c0001t0001g0271 a0001c0001t0007g0221	7	388	0.0180	39	c.48 others(50): Show c.4824_*4825insTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTT TCTTT	FGF18	ENSG00000156427.8	transcript	ENST00000274625.6	protein_coding		4004		chr5	TogoVar
FGF18_chr5_171414647_171462626	171461630	T T	TTTCTTTC others(32): Show TTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTC	downstream_gene_variant downstream_gene_variant	MODIFIER	NA19003.hp2 NA19003.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0087 a0001c0001t0001g0087	1	388	0.0026	39	c.48 others(50): Show c.4825_*4826insTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTT CTTTC	FGF18	ENSG00000156427.8	transcript	ENST00000274625.6	protein_coding		4005		chr5	TogoVar
FGF1_chr5_142587178_142691090	142669571	C C	CGGAAGGA others(32): Show CGGAAGGATGAATGGAGAGGCTATGGGGCATAGAGGGGCT	intron_variant intron_variant	MODIFIER	HG03225.hp2 HG03225.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0010 a0001c0001t0010	a0001c0001t0010g0324 a0001c0001t0010g0324	1	340	0.0029	39	c.-35 others(58): Show c.-35+16385_-35+16386insAGCCCCTCTATGCCCCATAGCCTCTC CATTCATCCTTCC	FGF1	ENSG00000113578.18	transcript	ENST00000337706.7	protein_coding	1/3			chr5	TogoVar
FGF22_chr19_634879_649373	646722	A A	ACGACCCC others(32): Show ACGACCCCAGAGGGCGGCCACCAGGAGGGCCCGCCACGCG	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01167.hp2 HG01516.hp2 HG01517.hp2 others(4): Show HG01167.hp2 HG01516.hp2 HG01517.hp2 HG02698.hp1 HG02922.hp1 HG04184.hp1 NA20752.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0005 a0001c0001t0003 a0001c0001t0005	a0001c0001t0003g0033 a0001c0001t0005g0030 a0001c0001t0005g0048 others(2): Show a0001c0001t0003g0033 a0001c0001t0005g0030 a0001c0001t0005g0048 a0001c0001t0005g0123 a0001c0001t0005g0124	7	434	0.0161	39	c.31 others(50): Show c.3118_*3119insCGACCCCAGAGGGCGGCCACCAGGAGGGCCCGCC ACGCG	FGF22	ENSG00000070388.12	transcript	ENST00000215530.7	protein_coding		2350		chr19	TogoVar
FGF3_chr11_69804968_69824416	69807205	G G	GATATATA others(32): Show GATATATATAGGAGATATATATATAATATATATGATATAT	downstream_gene_variant downstream_gene_variant	MODIFIER	NA18962.hp2 NA18962.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0004 a0001c0001t0001g0004	1	422	0.0024	39	c.30 others(50): Show c.3099_*3100insATATATCATATATATTATATATATATCTCCTATA TATAT	FGF3	ENSG00000186895.4	transcript	ENST00000334134.4	protein_coding		2762		chr11	TogoVar
FGFR3_chr4_1788293_1813867	1812155	C C	CCCCCCCG others(32): Show CCCCCCCGCCCCCCCCCCCTCGCACCCCCAGCCCTGGGAG	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01167.hp2 HG01167.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0003 a0001c0002t0001g0003	1	380	0.0026	39	c.48 others(50): Show c.4893_*4894insCCCCCCGCCCCCCCCCCCTCGCACCCCCAGCCCT GGGAG	FGFR3	ENSG00000068078.20	transcript	ENST00000440486.8	protein_coding		3289		chr4	TogoVar
FGFR4_chr5_177081915_177103144	177096953	C C	CTCCTCCT others(32): Show CTCCTCCTCTTCCTCCTCCTCCTCTTCCTCCTCCTCCTCT	intron_variant intron_variant	MODIFIER	NA20905.hp2 NA20905.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0001 a0002c0002t0001	a0002c0002t0001g0130 a0002c0002t0001g0130	1	372	0.0027	39	c.215 others(56): Show c.2153+213_2153+214insCCTCCTCTTCCTCCTCCTCCTCTTCCTC CTCCTCCTCTT	FGFR4	ENSG00000160867.15	transcript	ENST00000292408.9	protein_coding	16/17		INFO_REALIGN_3_PRIME	chr5	TogoVar
FGGY_chr1_59292094_59767730	59721337	G G	GTTTTTTT others(32): Show GTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG02615.hp1 HG03453.hp2 HG02615.hp1 HG03453.hp2	a0003 a0003	a0003c0005 a0003c0005	a0003c0005t0001 a0003c0005t0002 a0003c0005t0001 a0003c0005t0002	a0003c0005t0001g0042 a0003c0005t0002g0044 a0003c0005t0001g0042 a0003c0005t0002g0044	2	166	0.0121	39	c.151 others(60): Show c.1513-36575_1513-36574insTTTTTTTTTTTTTTTTTTTTTTTT TTTTTTTTTTTTTTT	FGGY	ENSG00000172456.18	transcript	ENST00000303721.12	protein_coding	14/15		INFO_REALIGN_3_PRIME	chr1	TogoVar
FHAD1_chr1_15242223_15403328	15389447	C C	CAAAAAAA others(32): Show CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	NA19002.hp2 NA19002.hp2	a0006 a0006	a0006c0045 a0006c0045	a0006c0045t0003 a0006c0045t0003	a0006c0045t0003g0225 a0006c0045t0003g0225	1	294	0.0034	39	c.426 others(58): Show c.4269+1337_4269+1338insAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAA	FHAD1	ENSG00000142621.21	transcript	ENST00000688493.1	protein_coding	32/33		INFO_REALIGN_3_PRIME	chr1	TogoVar
FHIP1A_chr4_151404176_151675503	151666258	G G	GCCAGTTA others(32): Show GCCAGTTAGAGATGTGATTTTTCTTTACCATTAGATACCT	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG02738.hp1 HG02738.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0055 a0001c0001t0055	a0001c0001t0055g0171 a0001c0001t0055g0171	1	252	0.0040	39	c.35 others(50): Show c.3507_*3545dupAGTTAGAGATGTGATTTTTCTTTACCATTAGATA CCTCC	FHIP1A	ENSG00000164142.16	transcript	ENST00000435205.6	protein_coding	14/14	3546	INFO_REALIGN_3_PRIME	chr4	TogoVar
FIBIN_chr11_26989112_27002087	26989187	T T	TCCCCCCC others(32): Show TCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC	upstream_gene_variant upstream_gene_variant	MODIFIER	NA19064.hp2 NA19064.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0005 a0001c0001t0005	a0001c0001t0005g0000 a0001c0001t0005g0000	1	452	0.0022	39	c.-53 others(50): Show c.-5340_-5339insCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC CCCCC	FIBIN	ENSG00000176971.4	transcript	ENST00000318627.4	protein_coding		4924		chr11	TogoVar
FKBP2_chr11_64236095_64249132	64237126	G G	GAGAGAGA others(32): Show GAGAGAGAGAGAGAGAGACAGAGACAGACAGAGACAGACA	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01106.hp1 NA18992.hp1 HG01106.hp1 NA18992.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0001 a0001c0001t0002g0001	2	332	0.0060	39	c.-40 others(50): Show c.-4011_-4010insAGAGAGAGAGAGAGAGACAGAGACAGACAGAGAC AGACA	FKBP2	ENSG00000173486.14	transcript	ENST00000309366.9	protein_coding		3968		chr11	TogoVar
FLNB_chr3_58003422_58177251	58100373	A A	AAAAATAT others(32): Show AAAAATATATATATATATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG03486.hp1 HG03486.hp1	a0003 a0003	a0003c0054 a0003c0054	a0003c0054t0013 a0003c0054t0013	a0003c0054t0013g0108 a0003c0054t0013g0108	1	180	0.0056	39	c.134 others(58): Show c.1345+1466_1345+1467insAAATATATATATATATATATATATAT ATATATATATATA	FLNB	ENSG00000136068.16	transcript	ENST00000295956.9	protein_coding	8/45		INFO_REALIGN_3_PRIME	chr3	TogoVar
FLRT1_chr11_64030931_64124171	64035711	C C	CCCGCCCC others(32): Show CCCGCCCCCGCCACCTCCTCCCCGCCCGCTGCCTCCCCCT	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02738.hp2 HG02738.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0011 a0001c0001t0011	a0001c0001t0011g0068 a0001c0001t0011g0068	1	300	0.0033	39	c.-14 others(50): Show c.-1486_-1485insCCGCCCCCGCCACCTCCTCCCCGCCCGCTGCCTC CCCCT	FLRT1	ENSG00000126500.4	transcript	ENST00000682287.1	protein_coding		219		chr11	TogoVar
FLRT1_chr11_64030931_64124171	64035713	G G	GCCCCCCG others(32): Show GCCCCCCGCCACCTCCTCCCCGCCCGCTGCCTCCCCCTCC	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01192.hp2 HG02738.hp1 HG01192.hp2 HG02738.hp1	a0001 a0001	a0001c0005 a0001c0007 a0001c0005 a0001c0007	a0001c0005t0039 a0001c0007t0008 a0001c0005t0039 a0001c0007t0008	a0001c0005t0039g0183 a0001c0007t0008g0277 a0001c0005t0039g0183 a0001c0007t0008g0277	2	300	0.0067	39	c.-14 others(50): Show c.-1484_-1483insCCCCCCGCCACCTCCTCCCCGCCCGCTGCCTCCC CCTCC	FLRT1	ENSG00000126500.4	transcript	ENST00000682287.1	protein_coding		217		chr11	TogoVar
FLRT1_chr11_64030931_64124171	64035713	G G	GCCCCCGC others(32): Show GCCCCCGCCACCTCCTCCCCGCCCGCTGCCTCCCCCCTCC	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02074.hp2 HG02074.hp2	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0002 a0001c0003t0002	a0001c0003t0002g0096 a0001c0003t0002g0096	1	300	0.0033	39	c.-14 others(50): Show c.-1484_-1483insCCCCCGCCACCTCCTCCCCGCCCGCTGCCTCCCC CCTCC	FLRT1	ENSG00000126500.4	transcript	ENST00000682287.1	protein_coding		217		chr11	TogoVar
FLRT2_chr14_85525144_85659428	85631112	T T	TATATATA others(32): Show TATATATATATATATATATATATATATATATATATATATA	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG04115.hp1 HG04115.hp1	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0120 a0002c0002t0120	a0002c0002t0120g0130 a0002c0002t0120g0130	1	338	0.0030	39	c.76 others(50): Show c.7615_*7616insATATATATATATATATATATATATATATATATAT ATATA	FLRT2	ENSG00000185070.12	transcript	ENST00000330753.6	protein_coding	2/2	7616		chr14	TogoVar
FLRT2_chr14_85525144_85659428	85643375	C C	CTTCCTTC others(32): Show CTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTTCCTTTCCT	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	NA18943.hp2 NA18943.hp2	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0261 a0001c0003t0261	a0001c0003t0261g0031 a0001c0003t0261g0031	1	338	0.0030	39	c.19 others(52): Show c.19880_*19881insCCTTCCTTCCTTCCTTCCTTCCTTCCTTTCCT TTCCTTT	FLRT2	ENSG00000185070.12	transcript	ENST00000330753.6	protein_coding	2/2	19881	INFO_REALIGN_3_PRIME	chr14	TogoVar
FLYWCH2_chr16_2878215_2904365	2892292	C C	CGAGAAAC others(32): Show CGAGAAACTAAAGAAAAAGAAAAAAAATTAGAGGTCAGGT	intron_variant intron_variant	MODIFIER	HG03209.hp1 HG03209.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0006 a0001c0001t0006	a0001c0001t0006g0051 a0001c0001t0006g0051	1	390	0.0026	39	c.-19 others(58): Show c.-199-2924_-199-2923insAACTAAAGAAAAAGAAAAAAAATTAG AGGTCAGGTGAGA	FLYWCH2	ENSG00000162076.13	transcript	ENST00000396958.8	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr16	TogoVar
FMO3_chr1_171085905_171122819	171095917	T T	TATAATAT others(32): Show TATAATATAATTATATATATAATTATAACATATAATATAA	intron_variant intron_variant	MODIFIER	HG02970.hp1 HG02970.hp1	a0005 a0005	a0005c0008 a0005c0008	a0005c0008t0001 a0005c0008t0001	a0005c0008t0001g0203 a0005c0008t0001g0203	1	404	0.0025	39	c.132 others(56): Show c.132+3129_132+3130insAATATAATTATATATATAATTATAACAT ATAATATAAAT	FMO3	ENSG00000007933.13	transcript	ENST00000367755.9	protein_coding	2/8		INFO_REALIGN_3_PRIME	chr1	TogoVar
FMR1_chrX_147906919_147956125	147912049	C C	CGCGGCGG others(32): Show CGCGGCGGCGGCGGCGGCGGCGGCGGCGGAGGCGGCGGCG	5_prime_UTR_variant 5_prime_UTR_variant	MODIFIER	HG01175.hp2 NA18970.hp1 HG01175.hp2 NA18970.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0021 a0001c0001t0021	a0001c0001t0021g0015 a0001c0001t0021g0088 a0001c0001t0021g0015 a0001c0001t0021g0088	2	304	0.0066	39	c.-10 others(48): Show c.-103_-102insAGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGG CGG	FMR1	ENSG00000102081.16	transcript	ENST00000370475.9	protein_coding	1/17	102	INFO_REALIGN_3_PRIME	chrX	TogoVar
FMR1_chrX_147906919_147956125	147912049	C C	CGCGGCGG others(32): Show CGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGAGGCGGCG	5_prime_UTR_variant 5_prime_UTR_variant	MODIFIER	HG02132.hp1 HG02132.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0058 a0001c0001t0058	a0001c0001t0058g0002 a0001c0001t0058g0002	1	304	0.0033	39	c.-10 others(47): Show c.-107_-69dupGGCGGCGGAGGCGGCGGCGGCGGCGGCGGCGGCGGCG GC	FMR1	ENSG00000102081.16	transcript	ENST00000370475.9	protein_coding	1/17	68	INFO_REALIGN_3_PRIME	chrX	TogoVar
FMR1_chrX_147906919_147956125	147912081	A A	AGGCGGCG others(32): Show AGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGC	5_prime_UTR_variant 5_prime_UTR_variant	MODIFIER	NA18979.hp1 NA18979.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0063 a0001c0001t0063	a0001c0001t0063g0002 a0001c0001t0063g0002	1	304	0.0033	39	c.-69 others(46): Show c.-69_-68insGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGG C	FMR1	ENSG00000102081.16	transcript	ENST00000370475.9	protein_coding	1/17	68	INFO_REALIGN_3_PRIME	chrX	TogoVar
FNBP1L_chr1_93443118_93559661	93500571	C C	CTCCTTTA others(32): Show CTCCTTTAGTCATACTGACTTTGGTTAGGTTATGTGTTTA	intron_variant intron_variant	MODIFIER	HG01109.hp1 HG02280.hp1 HG03195.hp2 others(1): Show HG01109.hp1 HG02280.hp1 HG03195.hp2 HG03516.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0047 a0001c0001t0001g0048 a0001c0001t0001g0049 others(1): Show a0001c0001t0001g0047 a0001c0001t0001g0048 a0001c0001t0001g0049 a0001c0001t0001g0050	4	324	0.0124	39	c.140 others(55): Show c.140+993_140+1031dupTTAGTCATACTGACTTTGGTTAGGTTATG TGTTTATCCT	FNBP1L	ENSG00000137942.18	transcript	ENST00000271234.13	protein_coding	2/16		INFO_REALIGN_3_PRIME	chr1	TogoVar
FNDC3A_chr13_48970912_49214779	49063631	C C	CCTAGAGA others(32): Show CCTAGAGAAATTGAAGTTAAATTCTTGATCTACAATTAGT	intron_variant intron_variant	MODIFIER	NA19056.hp1 NA19056.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0116 a0001c0001t0001g0116	1	292	0.0034	39	c.100 others(58): Show c.100-11657_100-11656insTAGAGAAATTGAAGTTAAATTCTTGA TCTACAATTAGTC	FNDC3A	ENSG00000102531.16	transcript	ENST00000492622.6	protein_coding	2/25		INFO_REALIGN_3_PRIME	chr13	TogoVar
FOXI1_chr5_170100897_170114734	170105356	G G	GGGGGGGG others(32): Show GGGGGGGGGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA	upstream_gene_variant upstream_gene_variant	MODIFIER	HG03453.hp1 HG03453.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0002 a0001c0002t0002	a0001c0002t0002g0017 a0001c0002t0002g0017	1	412	0.0024	39	c.-60 others(48): Show c.-602_-601insGGGGGGGGGGAGAGAGAGAGAGAGAGAGAGAGAGAG AGA	FOXI1	ENSG00000168269.10	transcript	ENST00000306268.8	protein_coding		540		chr5	TogoVar
FOXI1_chr5_170100897_170114734	170105356	G G	GGGGGGGG others(32): Show GGGGGGGGGGGGGAGAGAGAGAGAGAGAGAGAGAGAGAGA	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02738.hp2 NA18947.hp1 HG02738.hp2 NA18947.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0002 a0001c0002t0002	a0001c0002t0002g0004 a0001c0002t0002g0004	2	412	0.0049	39	c.-60 others(48): Show c.-602_-601insGGGGGGGGGGGGAGAGAGAGAGAGAGAGAGAGAGAG AGA	FOXI1	ENSG00000168269.10	transcript	ENST00000306268.8	protein_coding		540		chr5	TogoVar
FOXI1_chr5_170100897_170114734	170105368	G G	GAGAGAGA others(32): Show GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02135.hp1 HG02135.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0003 a0001c0001t0001g0003	1	412	0.0024	39	c.-59 others(48): Show c.-590_-589insAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG AGA	FOXI1	ENSG00000168269.10	transcript	ENST00000306268.8	protein_coding		528		chr5	TogoVar
FOXJ3_chr1_42171548_42340235	42222032	A A	AGGGGGAG others(32): Show AGGGGGAGGGGGAGGGGGAGGGGGAGGGGGAGGGGGAGGG	intron_variant intron_variant	MODIFIER	HG02698.hp1 HG02698.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0305 a0001c0001t0001g0305	1	332	0.0030	39	c.528 others(56): Show c.528+5850_528+5851insCCCTCCCCCTCCCCCTCCCCCTCCCCCT CCCCCTCCCCC	FOXJ3	ENSG00000198815.9	transcript	ENST00000361346.6	protein_coding	5/12			chr1	TogoVar
FOXJ3_chr1_42171548_42340235	42222049	A A	AAGGAGAA others(32): Show AAGGAGAAGGAGAAGGAGAAGGAGAAGGAGAAGGAGAAGG	intron_variant intron_variant	MODIFIER	HG00408.hp1 HG00408.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0177 a0001c0001t0001g0177	1	332	0.0030	39	c.528 others(56): Show c.528+5833_528+5834insCCTTCTCCTTCTCCTTCTCCTTCTCCTT CTCCTTCTCCT	FOXJ3	ENSG00000198815.9	transcript	ENST00000361346.6	protein_coding	5/12			chr1	TogoVar
FOXK2_chr17_82514732_82609602	82518645	G G	GTATATAG others(32): Show GTATATAGTTCATATATATAATTCATATATAGTTCATATA	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02486.hp1 HG02622.hp1 HG03130.hp2 others(1): Show HG02486.hp1 HG02622.hp1 HG03130.hp2 HG06807.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0004 a0001c0001t0003 a0001c0001t0004	a0001c0001t0003g0124 a0001c0001t0003g0150 a0001c0001t0003g0154 others(1): Show a0001c0001t0003g0124 a0001c0001t0003g0150 a0001c0001t0003g0154 a0001c0001t0004g0153	4	308	0.0130	39	c.-12 others(50): Show c.-1244_-1243insTATATAGTTCATATATATAATTCATATATAGTTC ATATA	FOXK2	ENSG00000141568.21	transcript	ENST00000335255.10	protein_coding		1086		chr17	TogoVar
FOXN3_chr14_89151177_89422233	89361121	T T	TACCACCT others(32): Show TACCACCTCCACCACCACCACCTCCACCACCACCTCCACC	intron_variant intron_variant	MODIFIER	NA19078.hp1 NA19078.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0055 a0001c0001t0055	a0001c0001t0055g0028 a0001c0001t0055g0028	1	230	0.0044	39	c.544 others(58): Show c.544-10314_544-10313insGGTGGAGGTGGTGGTGGAGGTGGTGG TGGTGGAGGTGGT	FOXN3	ENSG00000053254.16	transcript	ENST00000557258.6	protein_coding	2/5			chr14	TogoVar
FOXN3_chr14_89151177_89422233	89361387	C C	CCACCACC others(32): Show CCACCACCACCACCACCACCACCTCCAGCACCACCTCCAG	intron_variant intron_variant	MODIFIER	HG03195.hp1 HG03195.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0229 a0001c0001t0003g0229	1	230	0.0044	39	c.544 others(58): Show c.544-10580_544-10579insCTGGAGGTGGTGCTGGAGGTGGTGGT GGTGGTGGTGGTG	FOXN3	ENSG00000053254.16	transcript	ENST00000557258.6	protein_coding	2/5			chr14	TogoVar
FOXN3_chr14_89151177_89422233	89361462	T T	TCCACCAC others(32): Show TCCACCACCTCCACCACCACCTCCACCACCACCTCCAGCA	intron_variant intron_variant	MODIFIER	HG02965.hp2 HG02965.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0049 a0001c0001t0049	a0001c0001t0049g0230 a0001c0001t0049g0230	1	230	0.0044	39	c.544 others(58): Show c.544-10655_544-10654insTGCTGGAGGTGGTGGTGGAGGTGGTG GTGGAGGTGGTGG	FOXN3	ENSG00000053254.16	transcript	ENST00000557258.6	protein_coding	2/5			chr14	TogoVar
FOXN3_chr14_89151177_89422233	89361508	C C	CCACCTCC others(32): Show CCACCTCCACCACCACCACCTCCAGCACCACCACCTCCAG	intron_variant intron_variant	MODIFIER	HG01517.hp2 HG01517.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0096 a0001c0001t0096	a0001c0001t0096g0151 a0001c0001t0096g0151	1	230	0.0044	39	c.544 others(58): Show c.544-10701_544-10700insCTGGAGGTGGTGGTGCTGGAGGTGGT GGTGGTGGAGGTG	FOXN3	ENSG00000053254.16	transcript	ENST00000557258.6	protein_coding	2/5			chr14	TogoVar
FOXN3_chr14_89151177_89422233	89361509	T T	TACCACCT others(32): Show TACCACCTCCAGCACCACCTCCACCACTACCACCTCCAGC	intron_variant intron_variant	MODIFIER	NA18943.hp2 NA18943.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0004	a0001c0001t0004g0087 a0001c0001t0004g0087	1	230	0.0044	39	c.544 others(58): Show c.544-10702_544-10701insGCTGGAGGTGGTAGTGGTGGAGGTGG TGCTGGAGGTGGT	FOXN3	ENSG00000053254.16	transcript	ENST00000557258.6	protein_coding	2/5			chr14	TogoVar
FOXN3_chr14_89151177_89422233	89361567	T T	TCCACCAC others(32): Show TCCACCACCACCTCCACCACCACCACCTCCAGCACCACCA	intron_variant intron_variant	MODIFIER	NA18947.hp1 NA18947.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0007 a0001c0001t0007	a0001c0001t0007g0205 a0001c0001t0007g0205	1	230	0.0044	39	c.544 others(58): Show c.544-10760_544-10759insTGGTGGTGCTGGAGGTGGTGGTGGTG GAGGTGGTGGTGG	FOXN3	ENSG00000053254.16	transcript	ENST00000557258.6	protein_coding	2/5			chr14	TogoVar
FOXN3_chr14_89151177_89422233	89361574	C C	CCACCACC others(32): Show CCACCACCTCCAGCACCACCTCCACCACCACCACCTCCAG	intron_variant intron_variant	MODIFIER	HG03239.hp2 HG03239.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0017 a0001c0001t0017	a0001c0001t0017g0135 a0001c0001t0017g0135	1	230	0.0044	39	c.544 others(58): Show c.544-10767_544-10766insCTGGAGGTGGTGGTGGTGGAGGTGGT GCTGGAGGTGGTG	FOXN3	ENSG00000053254.16	transcript	ENST00000557258.6	protein_coding	2/5			chr14	TogoVar
FOXN3_chr14_89151177_89422233	89361613	C C	CCACCTCC others(32): Show CCACCTCCACCACTACCACCTCCACCACCACCACCTCCAG	intron_variant intron_variant	MODIFIER	NA18950.hp2 NA18950.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0038 a0001c0001t0038	a0001c0001t0038g0012 a0001c0001t0038g0012	1	230	0.0044	39	c.544 others(58): Show c.544-10806_544-10805insCTGGAGGTGGTGGTGGTGGAGGTGGT AGTGGTGGAGGTG	FOXN3	ENSG00000053254.16	transcript	ENST00000557258.6	protein_coding	2/5			chr14	TogoVar
FOXN3_chr14_89151177_89422233	89361613	C C	CTACCACC others(32): Show CTACCACCTCCAGCACCACCTCCACCACTACCACCTCCAG	intron_variant intron_variant	MODIFIER	NA18943.hp1 NA18943.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0009 a0001c0001t0009	a0001c0001t0009g0150 a0001c0001t0009g0150	1	230	0.0044	39	c.544 others(58): Show c.544-10806_544-10805insCTGGAGGTGGTAGTGGTGGAGGTGGT GCTGGAGGTGGTA	FOXN3	ENSG00000053254.16	transcript	ENST00000557258.6	protein_coding	2/5			chr14	TogoVar
FOXN3_chr14_89151177_89422233	89361677	C C	CACCACCT others(32): Show CACCACCTCCAGCACCACCTCCACCACCACCTCCACCACT	intron_variant intron_variant	MODIFIER	NA18943.hp1 NA18943.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0009 a0001c0001t0009	a0001c0001t0009g0150 a0001c0001t0009g0150	1	230	0.0044	39	c.544 others(58): Show c.544-10870_544-10869insAGTGGTGGAGGTGGTGGTGGAGGTGG TGCTGGAGGTGGT	FOXN3	ENSG00000053254.16	transcript	ENST00000557258.6	protein_coding	2/5			chr14	TogoVar
FOXN3_chr14_89151177_89422233	89361931	G G	GCACCACC others(32): Show GCACCACCTCCACCACCACCACCTCCACCACCACCTCCAC	intron_variant intron_variant	MODIFIER	HG00642.hp2 HG00642.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0010 a0001c0001t0010	a0001c0001t0010g0178 a0001c0001t0010g0178	1	230	0.0044	39	c.544 others(58): Show c.544-11124_544-11123insGTGGAGGTGGTGGTGGAGGTGGTGGT GGTGGAGGTGGTG	FOXN3	ENSG00000053254.16	transcript	ENST00000557258.6	protein_coding	2/5			chr14	TogoVar
FOXN3_chr14_89151177_89422233	89361966	T T	TCCACCAC others(32): Show TCCACCACCTCCACCACCACCTCCACCACCACCACCTCCA	intron_variant intron_variant	MODIFIER	NA18969.hp1 NA18969.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0010 a0001c0001t0010	a0001c0001t0010g0077 a0001c0001t0010g0077	1	230	0.0044	39	c.544 others(58): Show c.544-11159_544-11158insTGGAGGTGGTGGTGGTGGAGGTGGTG GTGGAGGTGGTGG	FOXN3	ENSG00000053254.16	transcript	ENST00000557258.6	protein_coding	2/5			chr14	TogoVar
FOXN3_chr14_89151177_89422233	89362078	G G	GCACTACC others(32): Show GCACTACCTCCACCACCACCACCTCCAGCACCACCTCCAC	intron_variant intron_variant	MODIFIER	NA18943.hp1 NA18943.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0009 a0001c0001t0009	a0001c0001t0009g0150 a0001c0001t0009g0150	1	230	0.0044	39	c.544 others(58): Show c.544-11271_544-11270insGTGGAGGTGGTGCTGGAGGTGGTGGT GGTGGAGGTAGTG	FOXN3	ENSG00000053254.16	transcript	ENST00000557258.6	protein_coding	2/5			chr14	TogoVar
FOXN3_chr14_89151177_89422233	89362082	C C	CACCTCCA others(32): Show CACCTCCACCACCACCTCCACCACTACCACCTCCAGCACT	intron_variant intron_variant	MODIFIER	HG03704.hp2 HG03704.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0142 a0001c0001t0001g0142	1	230	0.0044	39	c.544 others(58): Show c.544-11275_544-11274insAGTGCTGGAGGTGGTAGTGGTGGAGG TGGTGGTGGAGGT	FOXN3	ENSG00000053254.16	transcript	ENST00000557258.6	protein_coding	2/5			chr14	TogoVar
FRA10AC1_chr10_93662883_93707592	93702522	A A	ACCACCGC others(32): Show ACCACCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCG	5_prime_UTR_variant 5_prime_UTR_variant	MODIFIER	NA19078.hp1 NA19078.hp1	a0004 a0004	a0004c0004 a0004c0004	a0004c0004t0024 a0004c0004t0024	a0004c0004t0024g0065 a0004c0004t0024g0065	1	364	0.0028	39	c.-14 others(48): Show c.-149_-148insCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGG TGG	FRA10AC1	ENSG00000148690.12	transcript	ENST00000359204.5	protein_coding	1/14	2417		chr10	TogoVar
FRK_chr6_115926149_116065891	115958644	A A	AAAGAAAG others(32): Show AAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	intron_variant intron_variant	MODIFIER	HG01074.hp2 HG01081.hp1 HG01074.hp2 HG01081.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0238 a0001c0001t0003g0240 a0001c0001t0003g0238 a0001c0001t0003g0240	2	274	0.0073	39	c.800 others(56): Show c.800-2035_800-2034insCTTTCTTTCTTTCTTTCTTTCTTTCTTT CTTTCTTTCTT	FRK	ENSG00000111816.8	transcript	ENST00000606080.2	protein_coding	4/7			chr6	TogoVar
FRK_chr6_115926149_116065891	115958768	A A	AAAGAAAG others(32): Show AAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	intron_variant intron_variant	MODIFIER	HG02818.hp2 HG02818.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0034 a0001c0001t0034	a0001c0001t0034g0198 a0001c0001t0034g0198	1	274	0.0037	39	c.800 others(56): Show c.800-2159_800-2158insCTTTCTTTCTTTCTTTCTTTCTTTCTTT CTTTCTTTCTT	FRK	ENSG00000111816.8	transcript	ENST00000606080.2	protein_coding	4/7			chr6	TogoVar
FRMD3_chr9_83239622_83543401	83407851	C C	CTCTCTCT others(32): Show CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCATCTT	intron_variant intron_variant	MODIFIER	HG02818.hp1 HG02818.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0018 a0001c0001t0018	a0001c0001t0018g0190 a0001c0001t0018g0190	1	242	0.0041	39	c.148 others(58): Show c.148-18144_148-18143insAAGATGAGAGAGAGAGAGAGAGAGAG AGAGAGAGAGAGA	FRMD3	ENSG00000172159.16	transcript	ENST00000304195.8	protein_coding	1/13			chr9	TogoVar

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