Joint Open Genome and Omics Platform (JoGo)

Search by Variant

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Chr

Chromosome name (e.g., chr11).

Snpeff genename

Exact SnpEff gene name.

Sampleids

Target sampleid (e.g. HG02615).

Snpeff haplotype class

Haplotype-annotation class (e.g., ahapid, ahapid+chapid).

Snpeff annotation impact

Exact impact level (e.g., HIGH, MODERATE, LOW).

Snpeff annotation impact detail

Keyword match in SnpEff annotation.

Hapid

One or more haplotype IDs (comma-separated; e.g., a0001, a01, a0001c0001, a01c02, a1c2, a0001c0001t0005, a0001c0001t0005g0018).

Samplehapid

Sample haplotype IDs to include (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

No_hapid

Haplotype IDs to exclude (comma-separated; e.g., a0001, a0002, a0001c0001, a0001c0001t0005, a1, a01).

No_samplehapid

Sample haplotype IDs to exclude (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

Start

Start position (GRCh38).

End

End position (GRCh38).

Minac

Minimum alternate allele count (≥).

Maxac

Maximum alternate allele count (≤).

Minlen

Minimum variant length (≥).

Maxlen

Maximum variant length (≤).

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regionname	pos	ref	alt	annotation	impact	samples	ahapids	achapids	acthapids	actghapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	external
LRCH4_chr7_100569011_100591129	100575792	G G	GTGAAAGA others(32): Show GTGAAAGAAGAAAATGTGGTAAGGGAGAGGCCACAGGCGC	intron_variant intron_variant	MODIFIER	HG02896.hp2 HG02896.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0100 a0001c0001t0001g0100	1	370	0.0027	39	c.177 others(54): Show c.1776+40_1777-11dupGCGCCTGTGGCCTCTCCCTTACCACATTTT CTTCTTTCA	LRCH4	ENSG00000077454.17	transcript	ENST00000310300.11	protein_coding	16/17			chr7	TogoVar
LRIT3_chr4_109843107_109877315	109850414	C C	CTTTCTTT others(32): Show CTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTT	intron_variant intron_variant	MODIFIER	HG02080.hp2 HG02080.hp2	a0003 a0003	a0003c0003 a0003c0003	a0003c0003t0002 a0003c0003t0002	a0003c0003t0002g0210 a0003c0003t0002g0210	1	332	0.0030	39	c.117 others(56): Show c.117-1090_117-1089insTTTCTTTCTTTCTTTCTTTCTTTCTTTC TTTCTTTCTTT	LRIT3	ENSG00000183423.12	transcript	ENST00000594814.6	protein_coding	1/3			chr4	TogoVar
LRIT3_chr4_109843107_109877315	109850418	C C	CTTTCTTT others(32): Show CTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTT	intron_variant intron_variant	MODIFIER	HG01071.hp2 NA18948.hp1 HG01071.hp2 NA18948.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0071 a0001c0002t0001g0072 a0001c0002t0001g0071 a0001c0002t0001g0072	2	332	0.0060	39	c.117 others(56): Show c.117-1086_117-1085insTTTCTTTCTTTCTTTCTTTCTTTCTTTC TTTCTTTCTTT	LRIT3	ENSG00000183423.12	transcript	ENST00000594814.6	protein_coding	1/3			chr4	TogoVar
LRIT3_chr4_109843107_109877315	109850422	C C	CCTTCCTT others(32): Show CCTTCCTTCCTTCCTTCTTTCTTTCTTTCTTTCTTTCTTT	intron_variant intron_variant	MODIFIER	NA18959.hp2 NA18959.hp2	a0003 a0003	a0003c0003 a0003c0003	a0003c0003t0002 a0003c0003t0002	a0003c0003t0002g0152 a0003c0003t0002g0152	1	332	0.0030	39	c.117 others(56): Show c.117-1079_117-1078insCCTTCCTTCCTTCTTTCTTTCTTTCTTT CTTTCTTTCTT	LRIT3	ENSG00000183423.12	transcript	ENST00000594814.6	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr4	TogoVar
LRIT3_chr4_109843107_109877315	109850422	C C	CCTTCCTT others(32): Show CCTTCCTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTT	intron_variant intron_variant	MODIFIER	HG01074.hp1 HG01361.hp1 NA19009.hp1 others(2): Show HG01074.hp1 HG01361.hp1 NA19009.hp1 NA19058.hp2 NA19080.hp2	a0001 a0002 a0010 a0001 a0002 a0010	a0001c0002 a0002c0001 a0010c0018 a0001c0002 a0002c0001 a0010c0018	a0001c0002t0001 a0002c0001t0003 a0010c0018t0006 a0001c0002t0001 a0002c0001t0003 a0010c0018t0006	a0001c0002t0001g0007 a0001c0002t0001g0040 a0002c0001t0003g0230 others(1): Show a0001c0002t0001g0007 a0001c0002t0001g0040 a0002c0001t0003g0230 a0010c0018t0006g0119	5	332	0.0151	39	c.117 others(56): Show c.117-1079_117-1078insCCTTCTTTCTTTCTTTCTTTCTTTCTTT CTTTCTTTCTT	LRIT3	ENSG00000183423.12	transcript	ENST00000594814.6	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr4	TogoVar
LRIT3_chr4_109843107_109877315	109850422	C C	CCTTCTTT others(32): Show CCTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTT	intron_variant intron_variant	MODIFIER	HG01261.hp1 HG01261.hp1	a0002 a0002	a0002c0001 a0002c0001	a0002c0001t0004 a0002c0001t0004	a0002c0001t0004g0302 a0002c0001t0004g0302	1	332	0.0030	39	c.117 others(56): Show c.117-1079_117-1078insCTTTCTTTCTTTCTTTCTTTCTTTCTTT CTTTCTTTCTT	LRIT3	ENSG00000183423.12	transcript	ENST00000594814.6	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr4	TogoVar
LRIT3_chr4_109843107_109877315	109850422	C C	CTTTCTTT others(32): Show CTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTT	intron_variant intron_variant	MODIFIER	HG00408.hp2 HG01517.hp1 NA18906.hp1 others(2): Show HG00408.hp2 HG01517.hp1 NA18906.hp1 NA18986.hp2 NA19077.hp1	a0001 a0002 a0001 a0002	a0001c0002 a0001c0004 a0002c0001 a0001c0002 a0001c0004 a0002c0001	a0001c0002t0001 a0001c0004t0010 a0002c0001t0003 others(1): Show a0001c0002t0001 a0001c0004t0010 a0002c0001t0003 a0002c0001t0004	a0001c0002t0001g0009 a0001c0004t0010g0108 a0002c0001t0003g0270 others(1): Show a0001c0002t0001g0009 a0001c0004t0010g0108 a0002c0001t0003g0270 a0002c0001t0004g0269	5	332	0.0151	39	c.117 others(56): Show c.117-1082_117-1081insTTTCTTTCTTTCTTTCTTTCTTTCTTTC TTTCTTTCTTT	LRIT3	ENSG00000183423.12	transcript	ENST00000594814.6	protein_coding	1/3			chr4	TogoVar
LRMDA_chr10_75426624_76565168	75672589	C C	CCCTTCCC others(32): Show CCCTTCCCTTCCCTTCCCTACCCTACCCTACCCTACCCTG	intron_variant intron_variant	MODIFIER	NA18522.hp1 NA18522.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0002 a0001c0001t0002g0002	1	46	0.0217	39	c.131 others(60): Show c.131+234095_131+234096insCCTTCCCTTCCCTTCCCTACCCTA CCCTACCCTACCCTG	LRMDA	ENSG00000148655.16	transcript	ENST00000611255.5	protein_coding	2/6			chr10	TogoVar
LRP1B_chr2_140226423_142136016	141331541	T T	TTTCTTTC others(32): Show TTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTC	intron_variant intron_variant	MODIFIER	HG02630.hp2 HG02922.hp1 HG02630.hp2 HG02922.hp1	a0001 a0001	a0001c0005 a0001c0017 a0001c0005 a0001c0017	a0001c0005t0008 a0001c0017t0006 a0001c0005t0008 a0001c0017t0006	a0001c0005t0008g0010 a0001c0017t0006g0015 a0001c0005t0008g0010 a0001c0017t0006g0015	2	28	0.0714	39	c.344 others(58): Show c.344-76901_344-76900insGAAAGAAAGAAAGAAAGAAAGAAAGA AAGAAAGAAAGAA	LRP1B	ENSG00000168702.18	transcript	ENST00000389484.8	protein_coding	3/90			chr2	TogoVar
LRRC23_chr12_6899822_6919229	6909025	T T	TATATATA others(32): Show TATATATATTATATATTATATAATTATATATTATATATAA	intron_variant intron_variant	MODIFIER	HG00639.hp1 HG00642.hp2 HG00733.hp1 others(2): Show HG00639.hp1 HG00642.hp2 HG00733.hp1 HG01070.hp1 HG01099.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0021 a0001c0001t0001g0058 a0001c0001t0001g0066 others(1): Show a0001c0001t0001g0021 a0001c0001t0001g0058 a0001c0001t0001g0066 a0001c0001t0001g0067	5	316	0.0158	39	c.622 others(54): Show c.622-825_622-787dupATATATATTATATATTATATAATTATATAT TATATATAA	LRRC23	ENSG00000010626.15	transcript	ENST00000443597.7	protein_coding	5/7		INFO_REALIGN_3_PRIME	chr12	TogoVar
LRRC23_chr12_6899822_6919229	6909065	A A	ATATATAT others(32): Show ATATATATTATATATTATATAATTATATATTATATATAAT	intron_variant intron_variant	MODIFIER	HG00639.hp2 HG00639.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0089 a0001c0001t0001g0089	1	316	0.0032	39	c.622 others(54): Show c.622-824_622-786dupTATATATTATATATTATATAATTATATATT ATATATAAT	LRRC23	ENSG00000010626.15	transcript	ENST00000443597.7	protein_coding	5/7		INFO_REALIGN_3_PRIME	chr12	TogoVar
LRRC27_chr10_132327193_132386508	132364602	C C	CCACACTC others(32): Show CCACACTCACACCCACCCACACTTACACCCACCCACACTT	intron_variant intron_variant	MODIFIER	HG01361.hp2 HG01361.hp2	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0006 a0001c0003t0006	a0001c0003t0006g0098 a0001c0003t0006g0098	1	290	0.0035	39	c.129 others(56): Show c.1290-822_1290-821insCACACTCACACCCACCCACACTTACACC CACCCACACTT	LRRC27	ENSG00000148814.18	transcript	ENST00000368614.8	protein_coding	9/10			chr10	TogoVar
LRRC2_chr3_46510385_46571302	46544015	G G	GAATGATA others(32): Show GAATGATAAAAACCCATAAAAGTGATATGCATTTTTATCA	intron_variant intron_variant	MODIFIER	HG00099.hp1 HG00140.hp1 HG00423.hp2 others(52): Show HG00099.hp1 HG00140.hp1 HG00423.hp2 HG00609.hp1 HG00639.hp2 HG00642.hp1 HG01109.hp1 HG01123.hp2 HG01168.hp1 HG01261.hp2 HG01361.hp2 HG01433.hp2 HG01516.hp2 HG02056.hp2 HG02074.hp1 HG02080.hp2 HG02109.hp2 HG02129.hp1 HG02165.hp1 HG02273.hp2 HG02293.hp1 HG02523.hp1 HG02615.hp2 HG02698.hp2 HG02738.hp2 HG02886.hp1 HG03017.hp1 HG03017.hp2 HG03239.hp2 HG03490.hp2 HG03669.hp2 HG03688.hp1 HG03704.hp2 HG03834.hp1 HG04184.hp1 HG04199.hp1 NA18747.hp1 NA18942.hp1 NA18944.hp1 NA18951.hp2 NA18960.hp1 NA18960.hp2 NA18968.hp1 NA18974.hp2 NA18982.hp2 NA18984.hp2 NA18991.hp1 NA18998.hp2 NA19011.hp2 NA19043.hp1 NA19057.hp1 NA19075.hp2 NA19085.hp1 NA19091.hp1 NA20752.hp2	a0001 a0002 a0008 a0001 a0002 a0008	a0001c0001 a0002c0002 a0008c0007 a0001c0001 a0002c0002 a0008c0007	a0001c0001t0001 a0002c0002t0001 a0002c0002t0002 others(6): Show a0001c0001t0001 a0002c0002t0001 a0002c0002t0002 a0002c0002t0010 a0002c0002t0022 a0002c0002t0044 a0002c0002t0046 a0002c0002t0048 a0008c0007t0002	a0001c0001t0001g0042 a0002c0002t0001g0315 a0002c0002t0001g0325 others(51): Show a0001c0001t0001g0042 a0002c0002t0001g0315 a0002c0002t0001g0325 a0002c0002t0002g0015 a0002c0002t0002g0108 a0002c0002t0002g0118 a0002c0002t0002g0138 a0002c0002t0002g0158 a0002c0002t0002g0226 a0002c0002t0002g0230 a0002c0002t0002g0238 a0002c0002t0002g0251 a0002c0002t0002g0253 a0002c0002t0002g0254 a0002c0002t0002g0255 a0002c0002t0002g0256 a0002c0002t0002g0285 a0002c0002t0002g0286 a0002c0002t0002g0287 a0002c0002t0002g0289 a0002c0002t0002g0290 a0002c0002t0002g0293 a0002c0002t0002g0294 a0002c0002t0002g0295 a0002c0002t0002g0296 a0002c0002t0002g0297 a0002c0002t0002g0300 a0002c0002t0002g0301 a0002c0002t0002g0304 a0002c0002t0002g0309 a0002c0002t0002g0310 a0002c0002t0002g0311 a0002c0002t0002g0312 a0002c0002t0002g0313 a0002c0002t0002g0316 a0002c0002t0002g0318 a0002c0002t0002g0320 a0002c0002t0002g0321 a0002c0002t0002g0322 a0002c0002t0002g0324 a0002c0002t0002g0331 a0002c0002t0002g0332 a0002c0002t0002g0333 a0002c0002t0002g0339 a0002c0002t0002g0340 a0002c0002t0002g0341 a0002c0002t0010g0292 a0002c0002t0010g0319 a0002c0002t0022g0100 a0002c0002t0022g0308 a0002c0002t0044g0338 a0002c0002t0046g0299 a0002c0002t0048g0314 a0008c0007t0002g0334	55	364	0.1511	39	c.333 others(55): Show c.333+992_333+1030dupTGATAAAAATGCATATCACTTTTATGGGT TTTTATCATT	LRRC2	ENSG00000163827.14	transcript	ENST00000395905.8	protein_coding	3/8			chr3	TogoVar
LRRC36_chr16_67321815_67390204	67340891	A A	AGAATATG others(32): Show AGAATATGTACTACATATATTCTATAGAATATAGAATATG	intron_variant intron_variant	MODIFIER	HG03209.hp1 HG03209.hp1	a0003 a0003	a0003c0003 a0003c0003	a0003c0003t0001 a0003c0003t0001	a0003c0003t0001g0008 a0003c0003t0001g0008	1	194	0.0052	39	c.71- others(54): Show c.71-1066_71-1065insGAATATGTACTACATATATTCTATAGAATA TAGAATATG	LRRC36	ENSG00000159708.18	transcript	ENST00000329956.11	protein_coding	1/13			chr16	TogoVar
LRRC40_chr1_70139805_70210579	70190677	T T	TAAAAAAA others(32): Show TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	NA18985.hp2 NA18985.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0081 a0001c0001t0001g0081	1	320	0.0031	39	c.152 others(56): Show c.152-1405_152-1404insTTTTTTTTTTTTTTTTTTTTTTTTTTTT TTTTTTTTTTT	LRRC40	ENSG00000066557.6	transcript	ENST00000370952.4	protein_coding	1/14			chr1	TogoVar
LRRC56_chr11_532527_559912	541859	A A	ACCAGTAC others(32): Show ACCAGTACCCCCAGCACGCTCAGTACCCCACACACCCACG	intron_variant intron_variant	MODIFIER	HG01175.hp2 HG01175.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0007 a0002c0002t0007	a0002c0002t0007g0129 a0002c0002t0007g0129	1	387	0.0026	39	c.265 others(54): Show c.265+247_265+285dupAGCACGCTCAGTACCCCACACACCCACGCC AGTACCCCC	LRRC56	ENSG00000161328.11	transcript	ENST00000270115.8	protein_coding	5/13		INFO_REALIGN_3_PRIME	chr11	TogoVar
LRRC56_chr11_532527_559912	541871	A A	AGCACGCT others(32): Show AGCACGCTCAGTACCCCACACACCCACGCCAGTACCCCCG	intron_variant intron_variant	MODIFIER	HG01243.hp2 HG01943.hp1 HG02258.hp2 others(3): Show HG01243.hp2 HG01943.hp1 HG02258.hp2 HG02976.hp1 HG03471.hp2 NA18522.hp1	a0001 a0002 a0006 a0001 a0002 a0006	a0001c0001 a0002c0010 a0006c0007 a0001c0001 a0002c0010 a0006c0007	a0001c0001t0002 a0002c0010t0016 a0006c0007t0004 a0001c0001t0002 a0002c0010t0016 a0006c0007t0004	a0001c0001t0002g0165 a0002c0010t0016g0163 a0002c0010t0016g0164 others(3): Show a0001c0001t0002g0165 a0002c0010t0016g0163 a0002c0010t0016g0164 a0002c0010t0016g0249 a0006c0007t0004g0045 a0006c0007t0004g0052	6	387	0.0155	39	c.265 others(54): Show c.265+493_265+531dupACCCCACACACCCACGCCAGTACCCCCGGC ACGCTCAGT	LRRC56	ENSG00000161328.11	transcript	ENST00000270115.8	protein_coding	5/13		INFO_REALIGN_3_PRIME	chr11	TogoVar
LRRC56_chr11_532527_559912	541883	A A	ACCCCACA others(32): Show ACCCCACACACCCACGCCAGTACCCCCGGCACGCTCAGTG	intron_variant intron_variant	MODIFIER	HG01261.hp2 HG01261.hp2	a0009 a0009	a0009c0012 a0009c0012	a0009c0012t0020 a0009c0012t0020	a0009c0012t0020g0079 a0009c0012t0020g0079	1	387	0.0026	39	c.265 others(54): Show c.265+297_265+298insGCCCCACACACCCACGCCAGTACCCCCGGC ACGCTCAGT	LRRC56	ENSG00000161328.11	transcript	ENST00000270115.8	protein_coding	5/13		INFO_REALIGN_3_PRIME	chr11	TogoVar
LRRC56_chr11_532527_559912	541922	A A	ACCCCACA others(32): Show ACCCCACACACCCACGCCAGTACCCCCGGCACGCTCAGTG	intron_variant intron_variant	MODIFIER	HG00733.hp2 HG01081.hp1 HG01106.hp1 others(3): Show HG00733.hp2 HG01081.hp1 HG01106.hp1 HG01515.hp1 HG01993.hp2 HG02723.hp2	a0002 a0007 a0002 a0007	a0002c0002 a0007c0009 a0002c0002 a0007c0009	a0002c0002t0003 a0007c0009t0012 a0002c0002t0003 a0007c0009t0012	a0002c0002t0003g0094 a0007c0009t0012g0008 a0007c0009t0012g0131 a0002c0002t0003g0094 a0007c0009t0012g0008 a0007c0009t0012g0131	6	387	0.0155	39	c.265 others(54): Show c.265+336_265+337insGCCCCACACACCCACGCCAGTACCCCCGGC ACGCTCAGT	LRRC56	ENSG00000161328.11	transcript	ENST00000270115.8	protein_coding	5/13		INFO_REALIGN_3_PRIME	chr11	TogoVar
LRRC56_chr11_532527_559912	542117	A A	ACCCCACA others(32): Show ACCCCACACACCCACGCCAGTACCCCCGGCACGCTCAGTG	intron_variant intron_variant	MODIFIER	HG03209.hp1 HG03209.hp1	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0003 a0002c0002t0003	a0002c0002t0003g0057 a0002c0002t0003g0057	1	387	0.0026	39	c.265 others(54): Show c.265+591_265+629dupTACCCCCGGCACGCTCAGTGCCCCACACAC CCACGCCAG	LRRC56	ENSG00000161328.11	transcript	ENST00000270115.8	protein_coding	5/13		INFO_REALIGN_3_PRIME	chr11	TogoVar
LRRC71_chr1_156915632_156938094	156928363	C C	CTCTTCTT others(32): Show CTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCT	intron_variant intron_variant	MODIFIER	HG01123.hp1 HG02071.hp1 HG02615.hp2 others(14): Show HG01123.hp1 HG02071.hp1 HG02615.hp2 HG03471.hp2 NA18942.hp1 NA18945.hp1 NA18964.hp2 NA18975.hp1 NA18982.hp1 NA18982.hp2 NA18983.hp1 NA18995.hp2 NA19063.hp1 NA19068.hp1 NA19080.hp2 NA19084.hp1 NA20805.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0002c0002 a0002c0006 a0001c0001 a0002c0002 a0002c0006	a0001c0001t0001 a0002c0002t0001 a0002c0006t0001 a0001c0001t0001 a0002c0002t0001 a0002c0006t0001	a0001c0001t0001g0047 a0001c0001t0001g0209 a0001c0001t0001g0278 others(11): Show a0001c0001t0001g0047 a0001c0001t0001g0209 a0001c0001t0001g0278 a0002c0002t0001g0026 a0002c0002t0001g0032 a0002c0002t0001g0057 a0002c0002t0001g0089 a0002c0002t0001g0113 a0002c0002t0001g0114 a0002c0002t0001g0175 a0002c0002t0001g0198 a0002c0002t0001g0226 a0002c0002t0001g0288 a0002c0006t0001g0174	17	402	0.0423	39	c.996 others(54): Show c.996+365_996+403dupTTCTTCTTCTTCTTCTTCTTCTTCTTCTTC TTCTTCTTC	LRRC71	ENSG00000160838.14	transcript	ENST00000337428.8	protein_coding	9/14		INFO_REALIGN_3_PRIME	chr1	TogoVar
LRRC71_chr1_156915632_156938094	156928404	C C	CTTCTTCT others(32): Show CTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCTCTTA	intron_variant intron_variant	MODIFIER	HG02895.hp2 HG03139.hp1 NA21309.hp2 HG02895.hp2 HG03139.hp1 NA21309.hp2	a0003 a0004 a0003 a0004	a0003c0004 a0004c0005 a0003c0004 a0004c0005	a0003c0004t0001 a0004c0005t0001 a0003c0004t0001 a0004c0005t0001	a0003c0004t0001g0075 a0004c0005t0001g0229 a0004c0005t0001g0283 a0003c0004t0001g0075 a0004c0005t0001g0229 a0004c0005t0001g0283	3	402	0.0075	39	c.996 others(54): Show c.996+403_996+404insTTCTTCTTCTTCTTCTTCTTCTTCTTCTTC CTCTTATTC	LRRC71	ENSG00000160838.14	transcript	ENST00000337428.8	protein_coding	9/14		INFO_REALIGN_3_PRIME	chr1	TogoVar
LRRC7_chr1_69562922_70149364	69718101	A A	AAGAGAGA others(32): Show AAGAGAGAGAGAAAAAGAAAGAAAAAGAAAGAAAGAAAAG	intron_variant intron_variant	MODIFIER	HG01978.hp1 HG01978.hp2 NA20300.hp1 HG01978.hp1 HG01978.hp2 NA20300.hp1	a0001 a0001	a0001c0001 a0001c0011 a0001c0001 a0001c0011	a0001c0001t0001 a0001c0001t0005 a0001c0011t0088 a0001c0001t0001 a0001c0001t0005 a0001c0011t0088	a0001c0001t0001g0099 a0001c0001t0005g0108 a0001c0011t0088g0091 a0001c0001t0001g0099 a0001c0001t0005g0108 a0001c0011t0088g0091	3	108	0.0278	39	c.100 others(58): Show c.100+39630_100+39631insGAGAAAAAGAAAGAAAAAGAAAGAAA GAAAAGAGAGAGA	LRRC7	ENSG00000033122.21	transcript	ENST00000651989.2	protein_coding	2/26		INFO_REALIGN_3_PRIME	chr1	TogoVar
LRRC7_chr1_69562922_70149364	69718107	G G	GAGAGAAA others(32): Show GAGAGAAAAAGAAAGAAAAAGAAAGAAAAGAGAGAGAGAA	intron_variant intron_variant	MODIFIER	NA18992.hp2 NA18992.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0079 a0001c0001t0001g0079	1	108	0.0093	39	c.100 others(58): Show c.100+39630_100+39631insGAGAAAAAGAAAGAAAAAGAAAGAAA AGAGAGAGAGAAA	LRRC7	ENSG00000033122.21	transcript	ENST00000651989.2	protein_coding	2/26		INFO_REALIGN_3_PRIME	chr1	TogoVar
LRRC7_chr1_69562922_70149364	69718142	G G	GAGAAGAA others(32): Show GAGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA	intron_variant intron_variant	MODIFIER	HG03225.hp2 HG03225.hp2	a0008 a0008	a0008c0010 a0008c0010	a0008c0010t0043 a0008c0010t0043	a0008c0010t0043g0031 a0008c0010t0043g0031	1	108	0.0093	39	c.100 others(58): Show c.100+39668_100+39669insGAAAGAAAGAAAGAAAGAAAGAAAGA AAGAAAGAAAGAA	LRRC7	ENSG00000033122.21	transcript	ENST00000651989.2	protein_coding	2/26		INFO_REALIGN_3_PRIME	chr1	TogoVar
LRRIQ1_chr12_85031351_85250105	85198020	T T	TAATTATA others(32): Show TAATTATATATTATATATAAATATATATAATTATATTATA	intron_variant intron_variant	MODIFIER	HG02451.hp1 HG02451.hp1	a0001 a0001	a0001c0005 a0001c0005	a0001c0005t0001 a0001c0005t0001	a0001c0005t0001g0157 a0001c0005t0001g0157	1	228	0.0044	39	c.482 others(60): Show c.4823-31497_4823-31496insAATTATATATTATATATAAATATA TATAATTATATTATA	LRRIQ1	ENSG00000133640.20	transcript	ENST00000393217.7	protein_coding	24/26			chr12	TogoVar
LRRN4_chr20_6035546_6059060	6036961	C C	CTTTTTAA others(32): Show CTTTTTAAATTCATTTTTACATTTTAAATTCATTGCATGT	downstream_gene_variant downstream_gene_variant	MODIFIER	NA19006.hp2 NA19006.hp2	a0003 a0003	a0003c0003 a0003c0003	a0003c0003t0002 a0003c0003t0002	a0003c0003t0002g0004 a0003c0003t0002g0004	1	402	0.0025	39	c.40 others(50): Show c.4022_*4060dupACATGCAATGAATTTAAAATGTAAAAATGAATTT AAAAA	LRRN4	ENSG00000125872.9	transcript	ENST00000378858.5	protein_coding		3584		chr20	TogoVar
LRRTM3_chr10_66921036_67106551	66978552	A A	AAAAAAAA others(32): Show AAAAAAAAATATATATATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	NA19084.hp2 NA19084.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0213 a0001c0001t0001g0213	1	294	0.0034	39	c.153 others(60): Show c.1536+50101_1536+50102insAAAAAAATATATATATATATATAT ATATATATATATATA	LRRTM3	ENSG00000198739.11	transcript	ENST00000361320.5	protein_coding	2/2		INFO_REALIGN_3_PRIME	chr10	TogoVar
LRRTM3_chr10_66921036_67106551	66978552	A A	AAAAAAAT others(32): Show AAAAAAATATATATATATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	NA19055.hp2 NA19055.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0212 a0001c0001t0001g0212	1	294	0.0034	39	c.153 others(60): Show c.1536+50101_1536+50102insAAAAATATATATATATATATATAT ATATATATATATATA	LRRTM3	ENSG00000198739.11	transcript	ENST00000361320.5	protein_coding	2/2		INFO_REALIGN_3_PRIME	chr10	TogoVar
LRRTM3_chr10_66921036_67106551	66978552	A A	AAAAATAT others(32): Show AAAAATATATATATATATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG02132.hp2 HG02132.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0208 a0001c0001t0001g0208	1	294	0.0034	39	c.153 others(60): Show c.1536+50101_1536+50102insAAATATATATATATATATATATAT ATATATATATATATA	LRRTM3	ENSG00000198739.11	transcript	ENST00000361320.5	protein_coding	2/2		INFO_REALIGN_3_PRIME	chr10	TogoVar
LRRTM3_chr10_66921036_67106551	66978552	A A	ATAAAAAA others(32): Show ATAAAAAAAATAAAAAAAAAAAATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG03130.hp2 HG03130.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0267 a0001c0001t0003g0267	1	294	0.0034	39	c.153 others(60): Show c.1536+50100_1536+50101insTAAAAAAAATAAAAAAAAAAAATA TATATATATATATAT	LRRTM3	ENSG00000198739.11	transcript	ENST00000361320.5	protein_coding	2/2			chr10	TogoVar
LSAMP_chr3_115797374_116450487	116113420	A A	ATATATAT others(32): Show ATATATATATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG03098.hp1 HG03098.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0029 a0001c0001t0029	a0001c0001t0029g0072 a0001c0001t0029g0072	1	104	0.0096	39	c.156 others(58): Show c.156-26865_156-26864insAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAATATATATA	LSAMP	ENSG00000185565.13	transcript	ENST00000490035.7	protein_coding	1/6			chr3	TogoVar
LTB4R2_chr14_24305140_24317038	24315127	T T	TATAATAA others(32): Show TATAATAAAGAAAGGTAAAGGTGGGGGGGGATGATAGGAA	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00642.hp1 HG00642.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0001 a0001c0001t0001g0001	1	408	0.0025	39	c.33 others(50): Show c.3386_*3387insATAATAAAGAAAGGTAAAGGTGGGGGGGGATGAT AGGAA	LTB4R2	ENSG00000213906.10	transcript	ENST00000533293.2	protein_coding		3090		chr14	TogoVar
LTB4R_chr14_24306502_24323036	24315127	T T	TATAATAA others(32): Show TATAATAAAGAAAGGTAAAGGTGGGGGGGGATGATAGGAA	intron_variant intron_variant	MODIFIER	HG00642.hp1 HG00642.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0022 a0001c0001t0002g0022	1	428	0.0023	39	c.-15 others(54): Show c.-15-510_-15-509insATAATAAAGAAAGGTAAAGGTGGGGGGGGA TGATAGGAA	LTB4R	ENSG00000213903.9	transcript	ENST00000345363.8	protein_coding	1/1			chr14	TogoVar
LTBP1_chr2_32941953_33404509	33328162	T T	TAAATAAA others(32): Show TAAATAAATAAATAAATAAATAAATAAATAAAATAAAATA	intron_variant intron_variant	MODIFIER	HG02922.hp2 HG03195.hp2 HG02922.hp2 HG03195.hp2	a0001 a0002 a0001 a0002	a0001c0051 a0002c0029 a0001c0051 a0002c0029	a0001c0051t0007 a0002c0029t0008 a0001c0051t0007 a0002c0029t0008	a0001c0051t0007g0163 a0002c0029t0008g0080 a0001c0051t0007g0163 a0002c0029t0008g0080	2	164	0.0122	39	c.373 others(60): Show c.3730+12900_3730+12901insTAAATAAATAAATAAATAAATAAA ATAAAATAAAATAAA	LTBP1	ENSG00000049323.16	transcript	ENST00000404816.7	protein_coding	24/33		INFO_REALIGN_3_PRIME	chr2	TogoVar
LTN1_chr21_28923144_28997877	28927501	A A	ATATATAT others(32): Show ATATATATATATATATATATATATATATATTTTTTTTTTT	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00558.hp2 HG00558.hp2	a0001 a0001	a0001c0004 a0001c0004	a0001c0004t0001 a0001c0004t0001	a0001c0004t0001g0002 a0001c0004t0001g0002	1	404	0.0025	39	c.29 others(50): Show c.2946_*2947insAAAAAAAAAAATATATATATATATATATATATAT ATATA	LTN1	ENSG00000198862.14	transcript	ENST00000361371.10	protein_coding		642		chr21	TogoVar
LUC7L_chr16_183990_234449	186765	G G	GAGGAACA others(32): Show GAGGAACAGCGACACGGGGGAGGAACAGCGACACGGGGGA	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00597.hp2 HG00597.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0341 a0001c0001t0002g0341	1	350	0.0029	39	c.24 others(50): Show c.2432_*2433insTCCCCCGTGTCGCTGTTCCTCCCCCGTGTCGCTG TTCCT	LUC7L	ENSG00000007392.17	transcript	ENST00000293872.13	protein_coding		2224		chr16	TogoVar
LUC7L_chr16_183990_234449	187020	G G	GGAGGAAC others(32): Show GGAGGAACAGCGACACGGGGGAGGAACAGCGACACGGGGA	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01192.hp2 HG01192.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0201 a0001c0001t0001g0201	1	350	0.0029	39	c.21 others(50): Show c.2177_*2178insTCCCCGTGTCGCTGTTCCTCCCCCGTGTCGCTGT TCCTC	LUC7L	ENSG00000007392.17	transcript	ENST00000293872.13	protein_coding		1969		chr16	TogoVar
LUC7L_chr16_183990_234449	187020	G G	GGGAACAG others(32): Show GGGAACAGCGACACGGGGAGGAACAGCGACACGGGAGGGA	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01109.hp2 HG01109.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0269 a0001c0001t0001g0269	1	350	0.0029	39	c.21 others(50): Show c.2177_*2178insTCCCTCCCGTGTCGCTGTTCCTCCCCGTGTCGCT GTTCC	LUC7L	ENSG00000007392.17	transcript	ENST00000293872.13	protein_coding		1969		chr16	TogoVar
LUC7L_chr16_183990_234449	187037	G G	GGGAACAG others(32): Show GGGAACAGCGACACGGGGAGGAACAGCGACACGGGAGGGA	downstream_gene_variant downstream_gene_variant	MODIFIER	NA18984.hp1 NA18984.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0322 a0001c0001t0001g0322	1	350	0.0029	39	c.21 others(50): Show c.2160_*2161insTCCCTCCCGTGTCGCTGTTCCTCCCCGTGTCGCT GTTCC	LUC7L	ENSG00000007392.17	transcript	ENST00000293872.13	protein_coding		1952		chr16	TogoVar
LUC7L_chr16_183990_234449	187139	G G	GGAGGAAC others(32): Show GGAGGAACAGCGACACGGGGGAGGAACAGCGACACGGGGA	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01192.hp2 HG01192.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0201 a0001c0001t0001g0201	1	350	0.0029	39	c.20 others(50): Show c.2058_*2059insTCCCCGTGTCGCTGTTCCTCCCCCGTGTCGCTGT TCCTC	LUC7L	ENSG00000007392.17	transcript	ENST00000293872.13	protein_coding		1850		chr16	TogoVar
LUC7L_chr16_183990_234449	187155	G G	GAGGGAGG others(32): Show GAGGGAGGAACAGCGACACGGGGGGGAACAGCGACACGGA	downstream_gene_variant downstream_gene_variant	MODIFIER	NA18956.hp1 NA18956.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0250 a0001c0001t0001g0250	1	350	0.0029	39	c.20 others(50): Show c.2042_*2043insTCCGTGTCGCTGTTCCCCCCCGTGTCGCTGTTCC TCCCT	LUC7L	ENSG00000007392.17	transcript	ENST00000293872.13	protein_coding		1834		chr16	TogoVar
LURAP1L_chr9_12770020_12828060	12786547	C C	CTATATAT others(32): Show CTATATATATATATATATATATATATATATGTATATATAT	intron_variant intron_variant	MODIFIER	NA20129.hp1 NA20129.hp1	a0007 a0007	a0007c0008 a0007c0008	a0007c0008t0001 a0007c0008t0001	a0007c0008t0001g0312 a0007c0008t0001g0312	1	418	0.0024	39	c.312 others(58): Show c.312+10520_312+10521insTATATATATATATATATATATATATA TATGTATATATAT	LURAP1L	ENSG00000153714.6	transcript	ENST00000319264.4	protein_coding	1/1			chr9	TogoVar
LY75_chr2_159798355_159909756	159874615	A A	AATCTATA others(32): Show AATCTATATAAAGATATATATTTTGTAAATATATATAAAG	intron_variant intron_variant	MODIFIER	HG00558.hp2 HG00609.hp1 HG02015.hp1 others(11): Show HG00558.hp2 HG00609.hp1 HG02015.hp1 HG02027.hp1 HG02071.hp1 HG02896.hp2 HG02970.hp2 NA18952.hp1 NA18964.hp2 NA18999.hp1 NA19001.hp2 NA19055.hp1 NA19064.hp1 NA19074.hp2	a0005 a0013 a0030 others(2): Show a0005 a0013 a0030 a0031 a0043	a0005c0006 a0005c0038 a0013c0026 others(3): Show a0005c0006 a0005c0038 a0013c0026 a0030c0035 a0031c0033 a0043c0054	a0005c0006t0001 a0005c0006t0002 a0005c0038t0001 others(4): Show a0005c0006t0001 a0005c0006t0002 a0005c0038t0001 a0013c0026t0001 a0030c0035t0002 a0031c0033t0001 a0043c0054t0008	a0005c0006t0001g0015 a0005c0006t0001g0019 a0005c0006t0001g0023 others(11): Show a0005c0006t0001g0015 a0005c0006t0001g0019 a0005c0006t0001g0023 a0005c0006t0001g0027 a0005c0006t0001g0029 a0005c0006t0002g0017 a0005c0006t0002g0022 a0005c0006t0002g0024 a0005c0038t0001g0033 a0013c0026t0001g0232 a0013c0026t0001g0233 a0030c0035t0002g0030 a0031c0033t0001g0010 a0043c0054t0008g0128	14	330	0.0424	39	c.197 others(56): Show c.1974+828_1974+829insCTTTATATATATTTACAAAATATATATC TTTATATAGAT	LY75	ENSG00000054219.11	transcript	ENST00000263636.5	protein_coding	12/34			chr2	TogoVar
LY75_chr2_159798355_159909756	159874615	A A	AATCTATA others(32): Show AATCTATATAAAGATATATATTTTGTAAATATATATAAAT	intron_variant intron_variant	MODIFIER	NA18973.hp2 NA18973.hp2	a0003 a0003	a0003c0001 a0003c0001	a0003c0001t0004 a0003c0001t0004	a0003c0001t0004g0169 a0003c0001t0004g0169	1	330	0.0030	39	c.197 others(56): Show c.1974+828_1974+829insATTTATATATATTTACAAAATATATATC TTTATATAGAT	LY75	ENSG00000054219.11	transcript	ENST00000263636.5	protein_coding	12/34			chr2	TogoVar
LY75_chr2_159798355_159909756	159874615	A A	AATCTATA others(32): Show AATCTATATAAAGATATATATTTTGTAAATCTATATAAAG	intron_variant intron_variant	MODIFIER	HG02735.hp1 HG03927.hp1 HG04115.hp1 others(1): Show HG02735.hp1 HG03927.hp1 HG04115.hp1 HG04228.hp1	a0005 a0005	a0005c0006 a0005c0024 a0005c0006 a0005c0024	a0005c0006t0001 a0005c0024t0001 a0005c0006t0001 a0005c0024t0001	a0005c0006t0001g0021 a0005c0006t0001g0032 a0005c0024t0001g0020 others(1): Show a0005c0006t0001g0021 a0005c0006t0001g0032 a0005c0024t0001g0020 a0005c0024t0001g0031	4	330	0.0121	39	c.197 others(56): Show c.1974+828_1974+829insCTTTATATAGATTTACAAAATATATATC TTTATATAGAT	LY75	ENSG00000054219.11	transcript	ENST00000263636.5	protein_coding	12/34			chr2	TogoVar
LY75_chr2_159798355_159909756	159874615	A A	AATCTATA others(32): Show AATCTATATAAATATATATATTTTGTAAATATATATAAAT	intron_variant intron_variant	MODIFIER	HG00544.hp2 HG02132.hp1 HG04228.hp2 others(6): Show HG00544.hp2 HG02132.hp1 HG04228.hp2 NA18939.hp1 NA18948.hp2 NA18953.hp2 NA19010.hp1 NA19060.hp2 NA19083.hp1	a0006 a0021 a0006 a0021	a0006c0004 a0021c0029 a0006c0004 a0021c0029	a0006c0004t0001 a0006c0004t0002 a0021c0029t0001 a0006c0004t0001 a0006c0004t0002 a0021c0029t0001	a0006c0004t0001g0188 a0006c0004t0001g0189 a0006c0004t0001g0191 others(6): Show a0006c0004t0001g0188 a0006c0004t0001g0189 a0006c0004t0001g0191 a0006c0004t0001g0192 a0006c0004t0001g0193 a0006c0004t0001g0201 a0006c0004t0002g0190 a0021c0029t0001g0204 a0021c0029t0001g0319	9	330	0.0273	39	c.197 others(56): Show c.1974+828_1974+829insATTTATATATATTTACAAAATATATATA TTTATATAGAT	LY75	ENSG00000054219.11	transcript	ENST00000263636.5	protein_coding	12/34			chr2	TogoVar
LY75_chr2_159798355_159909756	159874624	A A	AAAGATAT others(32): Show AAAGATATATATTTTGTAAATATATATAAATATATATATT	intron_variant intron_variant	MODIFIER	HG02647.hp1 HG02647.hp1	a0026 a0026	a0026c0040 a0026c0040	a0026c0040t0001 a0026c0040t0001	a0026c0040t0001g0009 a0026c0040t0001g0009	1	330	0.0030	39	c.197 others(56): Show c.1974+819_1974+820insAATATATATATTTATATATATTTACAAA ATATATATCTT	LY75	ENSG00000054219.11	transcript	ENST00000263636.5	protein_coding	12/34			chr2	TogoVar
LY75_chr2_159798355_159909756	159874624	A A	AAATATAT others(32): Show AAATATATATATTTTGTAAATATATATAAAGATATATATT	intron_variant intron_variant	MODIFIER	HG02257.hp2 HG02896.hp1 HG02897.hp2 others(1): Show HG02257.hp2 HG02896.hp1 HG02897.hp2 HG03041.hp1	a0001 a0001	a0001c0008 a0001c0008	a0001c0008t0001 a0001c0008t0001	a0001c0008t0001g0239 a0001c0008t0001g0240 a0001c0008t0001g0241 others(1): Show a0001c0008t0001g0239 a0001c0008t0001g0240 a0001c0008t0001g0241 a0001c0008t0001g0320	4	330	0.0121	39	c.197 others(56): Show c.1974+819_1974+820insAATATATATCTTTATATATATTTACAAA ATATATATATT	LY75	ENSG00000054219.11	transcript	ENST00000263636.5	protein_coding	12/34			chr2	TogoVar
LY75_chr2_159798355_159909756	159874624	A A	AAATATAT others(32): Show AAATATATATATTTTGTAAATATATATAAATATATATAAT	intron_variant intron_variant	MODIFIER	HG01516.hp2 HG01516.hp2	a0012 a0012	a0012c0016 a0012c0016	a0012c0016t0001 a0012c0016t0001	a0012c0016t0001g0316 a0012c0016t0001g0316	1	330	0.0030	39	c.197 others(56): Show c.1974+819_1974+820insATTATATATATTTATATATATTTACAAA ATATATATATT	LY75	ENSG00000054219.11	transcript	ENST00000263636.5	protein_coding	12/34			chr2	TogoVar

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Search Results (Total: 3425 hits)