Joint Open Genome and Omics Platform (JoGo)

Search by Variant

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Chr

Chromosome name (e.g., chr11).

Snpeff genename

Exact SnpEff gene name.

Sampleids

Target sampleid (e.g. HG02615).

Snpeff haplotype class

Haplotype-annotation class (e.g., ahapid, ahapid+chapid).

Snpeff annotation impact

Exact impact level (e.g., HIGH, MODERATE, LOW).

Snpeff annotation impact detail

Keyword match in SnpEff annotation.

Hapid

One or more haplotype IDs (comma-separated; e.g., a0001, a01, a0001c0001, a01c02, a1c2, a0001c0001t0005, a0001c0001t0005g0018).

Samplehapid

Sample haplotype IDs to include (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

No_hapid

Haplotype IDs to exclude (comma-separated; e.g., a0001, a0002, a0001c0001, a0001c0001t0005, a1, a01).

No_samplehapid

Sample haplotype IDs to exclude (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

Start

Start position (GRCh38).

End

End position (GRCh38).

Minac

Minimum alternate allele count (≥).

Maxac

Maximum alternate allele count (≤).

Minlen

Minimum variant length (≥).

Maxlen

Maximum variant length (≤).

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⚠️ Results limited to 10,000 hits. Refine your search for more specific results.

regionname	pos	ref	alt	annotation	impact	samples	ahapids	achapids	acthapids	actghapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	status	chr	external
AFF2_chrX_148495617_149005663	148581447	C C	CACGT CACGT	intron_variant intron_variant	MODIFIER	NA20300.hp2 NA20300.hp2	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0079 a0001c0003t0079	a0001c0003t0079g0161 a0001c0003t0079g0161	1	169	0.0059	4	c.48- others(21): Show c.48-70552_48-70551insACGT	AFF2	ENSG00000155966.14	transcript	ENST00000370460.7	protein_coding	1/20		chrX	TogoVar
AFF2_chrX_148495617_149005663	148581469	C C	CACGT CACGT	intron_variant intron_variant	MODIFIER	HG02896.hp1 HG02896.hp1	a0001 a0001	a0001c0004 a0001c0004	a0001c0004t0095 a0001c0004t0095	a0001c0004t0095g0113 a0001c0004t0095g0113	1	169	0.0059	4	c.48- others(21): Show c.48-70529_48-70528insCGTA	AFF2	ENSG00000155966.14	transcript	ENST00000370460.7	protein_coding	1/20	INFO_REALIGN_3_PRIME	chrX	TogoVar
AFF2_chrX_148495617_149005663	148581530	A A	ACACG ACACG	intron_variant intron_variant	MODIFIER	HG02896.hp1 HG02896.hp1	a0001 a0001	a0001c0004 a0001c0004	a0001c0004t0095 a0001c0004t0095	a0001c0004t0095g0113 a0001c0004t0095g0113	1	169	0.0059	4	c.48- others(21): Show c.48-70469_48-70468insCACG	AFF2	ENSG00000155966.14	transcript	ENST00000370460.7	protein_coding	1/20		chrX	TogoVar
AFF2_chrX_148495617_149005663	148581592	A A	ATACG ATACG	intron_variant intron_variant	MODIFIER	HG02027.hp1 HG02735.hp1 HG02886.hp2 others(3): Show HG02027.hp1 HG02735.hp1 HG02886.hp2 HG03471.hp1 NA18989.hp1 NA19086.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0006 a0001c0001t0025 others(3): Show a0001c0001t0001 a0001c0001t0006 a0001c0001t0025 a0001c0001t0041 a0001c0001t0085 a0001c0001t0088	a0001c0001t0001g0076 a0001c0001t0006g0120 a0001c0001t0025g0081 others(3): Show a0001c0001t0001g0076 a0001c0001t0006g0120 a0001c0001t0025g0081 a0001c0001t0041g0071 a0001c0001t0085g0167 a0001c0001t0088g0104	6	169	0.0355	4	c.48- others(21): Show c.48-70405_48-70404insCGTA	AFF2	ENSG00000155966.14	transcript	ENST00000370460.7	protein_coding	1/20	INFO_REALIGN_3_PRIME	chrX	TogoVar
AFF2_chrX_148495617_149005663	148614693	T T	TTTTC TTTTC	intron_variant intron_variant	MODIFIER	HG01433.hp1 NA18943.hp1 NA18959.hp1 others(6): Show HG01433.hp1 NA18943.hp1 NA18959.hp1 NA18970.hp1 NA18995.hp1 NA19012.hp1 NA19056.hp1 NA19085.hp1 NA20905.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0012 a0001c0001t0014 a0001c0001t0017 others(5): Show a0001c0001t0012 a0001c0001t0014 a0001c0001t0017 a0001c0001t0048 a0001c0001t0065 a0001c0001t0067 a0001c0001t0096 a0001c0001t0104	a0001c0001t0012g0168 a0001c0001t0014g0055 a0001c0001t0014g0058 others(6): Show a0001c0001t0012g0168 a0001c0001t0014g0055 a0001c0001t0014g0058 a0001c0001t0017g0040 a0001c0001t0048g0013 a0001c0001t0065g0056 a0001c0001t0067g0057 a0001c0001t0096g0146 a0001c0001t0104g0049	9	169	0.0533	4	c.48- others(21): Show c.48-37269_48-37266dupTTTC	AFF2	ENSG00000155966.14	transcript	ENST00000370460.7	protein_coding	1/20	INFO_REALIGN_3_PRIME	chrX	TogoVar
AFF2_chrX_148495617_149005663	148614726	T T	TTTCC TTTCC	intron_variant intron_variant	MODIFIER	NA19004.hp1 NA19004.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0066 a0001c0001t0003g0066	1	169	0.0059	4	c.48- others(21): Show c.48-37270_48-37269insCTTC	AFF2	ENSG00000155966.14	transcript	ENST00000370460.7	protein_coding	1/20	INFO_REALIGN_3_PRIME	chrX	TogoVar
AFF2_chrX_148495617_149005663	148614738	T T	TTTTC TTTTC	intron_variant intron_variant	MODIFIER	HG01952.hp1 HG02027.hp1 HG02071.hp1 others(9): Show HG01952.hp1 HG02027.hp1 HG02071.hp1 HG02135.hp1 HG02280.hp2 HG03540.hp1 HG03942.hp1 HG04204.hp1 NA18959.hp1 NA18974.hp1 NA19079.hp1 NA19085.hp1	a0001 a0002 a0003 a0001 a0002 a0003	a0001c0001 a0001c0002 a0002c0009 others(1): Show a0001c0001 a0001c0002 a0002c0009 a0003c0008	a0001c0001t0008 a0001c0001t0012 a0001c0001t0017 others(9): Show a0001c0001t0008 a0001c0001t0012 a0001c0001t0017 a0001c0001t0024 a0001c0001t0033 a0001c0001t0057 a0001c0001t0088 a0001c0001t0119 a0001c0002t0091 a0001c0002t0101 a0002c0009t0103 a0003c0008t0045	a0001c0001t0008g0051 a0001c0001t0012g0168 a0001c0001t0017g0040 others(9): Show a0001c0001t0008g0051 a0001c0001t0012g0168 a0001c0001t0017g0040 a0001c0001t0024g0093 a0001c0001t0033g0083 a0001c0001t0057g0135 a0001c0001t0088g0104 a0001c0001t0119g0061 a0001c0002t0091g0136 a0001c0002t0101g0160 a0002c0009t0103g0050 a0003c0008t0045g0010	12	169	0.0710	4	c.48- others(21): Show c.48-37210_48-37207dupTCTT	AFF2	ENSG00000155966.14	transcript	ENST00000370460.7	protein_coding	1/20	INFO_REALIGN_3_PRIME	chrX	TogoVar
AFF2_chrX_148495617_149005663	148614742	C C	CTTCT CTTCT	intron_variant intron_variant	MODIFIER	HG02809.hp1 NA19240.hp1 NA20129.hp1 HG02809.hp1 NA19240.hp1 NA20129.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0035 a0001c0001t0076 a0001c0002t0018 a0001c0001t0035 a0001c0001t0076 a0001c0002t0018	a0001c0001t0035g0078 a0001c0001t0076g0153 a0001c0002t0018g0156 a0001c0001t0035g0078 a0001c0001t0076g0153 a0001c0002t0018g0156	3	169	0.0178	4	c.48- others(21): Show c.48-37255_48-37254insCTTT	AFF2	ENSG00000155966.14	transcript	ENST00000370460.7	protein_coding	1/20	INFO_REALIGN_3_PRIME	chrX	TogoVar
AFF2_chrX_148495617_149005663	148614796	T T	TTCTC TTCTC	intron_variant intron_variant	MODIFIER	HG01109.hp1 HG01934.hp1 HG02280.hp2 others(10): Show HG01109.hp1 HG01934.hp1 HG02280.hp2 HG02451.hp1 HG02451.hp2 HG02630.hp1 HG02818.hp2 HG02895.hp1 HG03041.hp2 HG03209.hp1 HG03540.hp1 HG03540.hp2 NA21309.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0010 a0001c0001t0022 a0001c0001t0037 others(8): Show a0001c0001t0010 a0001c0001t0022 a0001c0001t0037 a0001c0001t0098 a0001c0001t0106 a0001c0002t0034 a0001c0002t0072 a0001c0002t0078 a0001c0002t0091 a0001c0002t0101 a0001c0002t0111	a0001c0001t0010g0115 a0001c0001t0010g0116 a0001c0001t0010g0124 others(10): Show a0001c0001t0010g0115 a0001c0001t0010g0116 a0001c0001t0010g0124 a0001c0001t0022g0134 a0001c0001t0037g0037 a0001c0001t0098g0119 a0001c0001t0106g0121 a0001c0002t0034g0077 a0001c0002t0072g0018 a0001c0002t0078g0152 a0001c0002t0091g0136 a0001c0002t0101g0160 a0001c0002t0111g0096	13	169	0.0769	4	c.48- others(21): Show c.48-37188_48-37185dupTCTC	AFF2	ENSG00000155966.14	transcript	ENST00000370460.7	protein_coding	1/20	INFO_REALIGN_3_PRIME	chrX	TogoVar
AFF2_chrX_148495617_149005663	148623600	A A	AATAT AATAT	intron_variant intron_variant	MODIFIER	HG01934.hp1 HG02451.hp2 HG03540.hp2 HG01934.hp1 HG02451.hp2 HG03540.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0010 a0001c0001t0098 a0001c0001t0010 a0001c0001t0098	a0001c0001t0010g0115 a0001c0001t0010g0116 a0001c0001t0098g0119 a0001c0001t0010g0115 a0001c0001t0010g0116 a0001c0001t0098g0119	3	169	0.0178	4	c.48- others(21): Show c.48-28382_48-28379dupATAT	AFF2	ENSG00000155966.14	transcript	ENST00000370460.7	protein_coding	1/20	INFO_REALIGN_3_PRIME	chrX	TogoVar
AFF2_chrX_148495617_149005663	148629101	T T	TTGTG TTGTG	intron_variant intron_variant	MODIFIER	HG02895.hp1 NA18989.hp1 NA21309.hp2 HG02895.hp1 NA18989.hp1 NA21309.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0022 a0001c0001t0085 a0001c0001t0106 a0001c0001t0022 a0001c0001t0085 a0001c0001t0106	a0001c0001t0022g0134 a0001c0001t0085g0167 a0001c0001t0106g0121 a0001c0001t0022g0134 a0001c0001t0085g0167 a0001c0001t0106g0121	3	169	0.0178	4	c.48- others(21): Show c.48-22872_48-22869dupGTGT	AFF2	ENSG00000155966.14	transcript	ENST00000370460.7	protein_coding	1/20	INFO_REALIGN_3_PRIME	chrX	TogoVar
AFF2_chrX_148495617_149005663	148666585	A A	AAAAT AAAAT	intron_variant intron_variant	MODIFIER	HG02486.hp1 NA18986.hp1 NA18990.hp1 others(2): Show HG02486.hp1 NA18986.hp1 NA18990.hp1 NA18994.hp1 NA19000.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0013 a0001c0001t0059 others(2): Show a0001c0001t0004 a0001c0001t0013 a0001c0001t0059 a0001c0001t0063 a0001c0001t0093	a0001c0001t0004g0045 a0001c0001t0013g0072 a0001c0001t0059g0014 others(2): Show a0001c0001t0004g0045 a0001c0001t0013g0072 a0001c0001t0059g0014 a0001c0001t0063g0053 a0001c0001t0093g0007	5	169	0.0296	4	c.104 others(23): Show c.1041+3860_1041+3863dupATAA	AFF2	ENSG00000155966.14	transcript	ENST00000370460.7	protein_coding	3/20	INFO_REALIGN_3_PRIME	chrX	TogoVar
AFF2_chrX_148495617_149005663	148682578	G G	GTGGA GTGGA	intron_variant intron_variant	MODIFIER	HG00642.hp1 HG01891.hp1 HG02896.hp2 others(6): Show HG00642.hp1 HG01891.hp1 HG02896.hp2 HG02965.hp1 HG03041.hp2 HG03130.hp1 NA19086.hp1 NA19091.hp1 NA20129.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0003 a0001c0001 a0001c0002 a0001c0003	a0001c0001t0002 a0001c0001t0041 a0001c0001t0100 others(6): Show a0001c0001t0002 a0001c0001t0041 a0001c0001t0100 a0001c0002t0019 a0001c0002t0020 a0001c0002t0022 a0001c0002t0072 a0001c0002t0108 a0001c0003t0112	a0001c0001t0002g0020 a0001c0001t0041g0071 a0001c0001t0100g0140 others(6): Show a0001c0001t0002g0020 a0001c0001t0041g0071 a0001c0001t0100g0140 a0001c0002t0019g0123 a0001c0002t0020g0132 a0001c0002t0022g0003 a0001c0002t0072g0018 a0001c0002t0108g0002 a0001c0003t0112g0130	9	169	0.0533	4	c.104 others(25): Show c.1041+19855_1041+19858dupTGGA	AFF2	ENSG00000155966.14	transcript	ENST00000370460.7	protein_coding	3/20	INFO_REALIGN_3_PRIME	chrX	TogoVar
AFF2_chrX_148495617_149005663	148700419	A A	AGTGT AGTGT	intron_variant intron_variant	MODIFIER	HG00280.hp1 HG00639.hp2 HG00738.hp1 others(68): Show HG00280.hp1 HG00639.hp2 HG00738.hp1 HG01069.hp1 HG01074.hp1 HG01192.hp1 HG01255.hp1 HG01256.hp1 HG01258.hp1 HG01358.hp1 HG01433.hp1 HG01515.hp1 HG01884.hp2 HG01952.hp1 HG02015.hp1 HG02040.hp1 HG02071.hp1 HG02074.hp1 HG02083.hp1 HG02129.hp1 HG02132.hp1 HG02135.hp1 HG02630.hp1 HG02630.hp2 HG02809.hp1 HG03041.hp2 HG03130.hp1 HG03471.hp1 HG03490.hp1 HG03492.hp1 HG03540.hp1 HG03654.hp1 HG03942.hp1 HG04199.hp1 HG06807.hp1 NA18943.hp1 NA18945.hp1 NA18952.hp1 NA18953.hp1 NA18959.hp1 NA18960.hp1 NA18962.hp1 NA18965.hp1 NA18967.hp1 NA18970.hp1 NA18971.hp1 NA18974.hp1 NA18977.hp1 NA18982.hp1 NA18983.hp1 NA18984.hp1 NA18986.hp1 NA18988.hp1 NA18990.hp1 NA18995.hp1 NA19000.hp1 NA19004.hp1 NA19007.hp1 NA19009.hp1 NA19012.hp1 NA19060.hp1 NA19066.hp1 NA19079.hp1 NA19082.hp1 NA19083.hp1 NA19085.hp1 NA19086.hp1 NA19091.hp1 NA20129.hp2 NA20805.hp1 NA20905.hp1	a0001 a0002 a0003 others(1): Show a0001 a0002 a0003 a0004	a0001c0001 a0001c0002 a0001c0003 others(3): Show a0001c0001 a0001c0002 a0001c0003 a0002c0009 a0003c0008 a0004c0006	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(49): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 a0001c0001t0006 a0001c0001t0007 a0001c0001t0008 a0001c0001t0012 a0001c0001t0014 a0001c0001t0015 a0001c0001t0017 a0001c0001t0024 a0001c0001t0025 a0001c0001t0033 a0001c0001t0035 a0001c0001t0041 a0001c0001t0042 a0001c0001t0043 a0001c0001t0049 a0001c0001t0050 a0001c0001t0057 a0001c0001t0058 a0001c0001t0059 a0001c0001t0060 a0001c0001t0061 a0001c0001t0063 a0001c0001t0065 a0001c0001t0067 a0001c0001t0068 a0001c0001t0071 a0001c0001t0074 a0001c0001t0081 a0001c0001t0096 a0001c0001t0099 a0001c0001t0104 a0001c0001t0114 a0001c0001t0115 a0001c0001t0116 a0001c0001t0117 a0001c0001t0122 a0001c0001t0123 a0001c0002t0022 a0001c0002t0029 a0001c0002t0031 a0001c0002t0034 a0001c0002t0072 a0001c0002t0101 a0001c0002t0108 a0001c0003t0028 a0002c0009t0103 a0003c0008t0045 a0004c0006t0012	a0001c0001t0001g0019 a0001c0001t0001g0036 a0001c0001t0001g0039 others(68): Show a0001c0001t0001g0019 a0001c0001t0001g0036 a0001c0001t0001g0039 a0001c0001t0001g0068 a0001c0001t0002g0020 a0001c0001t0002g0054 a0001c0001t0002g0166 a0001c0001t0003g0063 a0001c0001t0003g0065 a0001c0001t0003g0066 a0001c0001t0004g0041 a0001c0001t0004g0043 a0001c0001t0004g0045 a0001c0001t0004g0100 a0001c0001t0006g0138 a0001c0001t0006g0144 a0001c0001t0006g0163 a0001c0001t0007g0048 a0001c0001t0007g0089 a0001c0001t0008g0051 a0001c0001t0008g0059 a0001c0001t0008g0073 a0001c0001t0012g0168 a0001c0001t0014g0055 a0001c0001t0014g0058 a0001c0001t0015g0032 a0001c0001t0015g0060 a0001c0001t0017g0040 a0001c0001t0017g0145 a0001c0001t0024g0091 a0001c0001t0024g0093 a0001c0001t0025g0081 a0001c0001t0033g0083 a0001c0001t0035g0078 a0001c0001t0041g0071 a0001c0001t0042g0012 a0001c0001t0043g0006 a0001c0001t0049g0105 a0001c0001t0050g0026 a0001c0001t0057g0135 a0001c0001t0058g0097 a0001c0001t0059g0014 a0001c0001t0060g0067 a0001c0001t0061g0098 a0001c0001t0063g0053 a0001c0001t0065g0056 a0001c0001t0067g0057 a0001c0001t0068g0169 a0001c0001t0071g0028 a0001c0001t0074g0033 a0001c0001t0081g0052 a0001c0001t0096g0146 a0001c0001t0099g0141 a0001c0001t0104g0049 a0001c0001t0114g0079 a0001c0001t0115g0080 a0001c0001t0116g0075 a0001c0001t0117g0164 a0001c0001t0122g0092 a0001c0001t0123g0090 a0001c0002t0022g0003 a0001c0002t0029g0149 a0001c0002t0031g0148 a0001c0002t0034g0077 a0001c0002t0072g0018 a0001c0002t0101g0160 a0001c0002t0108g0002 a0001c0003t0028g0005 a0002c0009t0103g0050 a0003c0008t0045g0010 a0004c0006t0012g0011	71	169	0.4201	4	c.104 others(25): Show c.1041+37691_1041+37694dupTGTG	AFF2	ENSG00000155966.14	transcript	ENST00000370460.7	protein_coding	3/20	INFO_REALIGN_3_PRIME	chrX	TogoVar
AFF2_chrX_148495617_149005663	148700985	G G	GGAGA GGAGA	intron_variant intron_variant	MODIFIER	HG00140.hp1 HG00621.hp1 HG01934.hp1 others(16): Show HG00140.hp1 HG00621.hp1 HG01934.hp1 HG02027.hp1 HG02258.hp1 HG02280.hp1 HG02735.hp1 HG02738.hp1 HG02818.hp2 HG03540.hp2 HG04228.hp1 NA18747.hp1 NA18940.hp1 NA18989.hp1 NA19005.hp1 NA19058.hp1 NA19062.hp1 NA20752.hp1 homoSapiens_chm13v2.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0007 a0001c0001 a0001c0002 a0001c0007	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(10): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0005 a0001c0001t0010 a0001c0001t0013 a0001c0001t0037 a0001c0001t0069 a0001c0001t0084 a0001c0001t0085 a0001c0001t0088 a0001c0002t0054 a0001c0007t0080	a0001c0001t0001g0070 a0001c0001t0001g0076 a0001c0001t0001g0082 others(16): Show a0001c0001t0001g0070 a0001c0001t0001g0076 a0001c0001t0001g0082 a0001c0001t0002g0085 a0001c0001t0003g0042 a0001c0001t0003g0086 a0001c0001t0005g0001 a0001c0001t0005g0009 a0001c0001t0005g0022 a0001c0001t0010g0115 a0001c0001t0010g0116 a0001c0001t0013g0034 a0001c0001t0037g0037 a0001c0001t0069g0047 a0001c0001t0084g0030 a0001c0001t0085g0167 a0001c0001t0088g0104 a0001c0002t0054g0133 a0001c0007t0080g0162	19	169	0.1124	4	c.104 others(25): Show c.1041+38240_1041+38243dupGAGA	AFF2	ENSG00000155966.14	transcript	ENST00000370460.7	protein_coding	3/20	INFO_REALIGN_3_PRIME	chrX	TogoVar
AFF2_chrX_148495617_149005663	148701011	A A	AGAAT AGAAT	intron_variant intron_variant	MODIFIER	HG02622.hp2 HG02622.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0089 a0001c0001t0089	a0001c0001t0089g0110 a0001c0001t0089g0110	1	169	0.0059	4	c.104 others(25): Show c.1041+38243_1041+38244insGAAT	AFF2	ENSG00000155966.14	transcript	ENST00000370460.7	protein_coding	3/20		chrX	TogoVar
AFF2_chrX_148495617_149005663	148701012	A A	ATGTG ATGTG	intron_variant intron_variant	MODIFIER	HG00609.hp1 HG00639.hp2 HG00642.hp1 others(65): Show HG00609.hp1 HG00639.hp2 HG00642.hp1 HG00738.hp1 HG01069.hp1 HG01074.hp1 HG01099.hp1 HG01106.hp1 HG01192.hp1 HG01255.hp1 HG01258.hp1 HG01261.hp1 HG01433.hp1 HG01928.hp1 HG01978.hp1 HG02056.hp1 HG02129.hp1 HG02132.hp1 HG02135.hp1 HG02572.hp1 HG02602.hp1 HG02630.hp2 HG02698.hp1 HG02809.hp1 HG02809.hp2 HG02886.hp1 HG03017.hp1 HG03098.hp1 HG03130.hp1 HG03492.hp1 HG03654.hp1 HG03688.hp1 HG03942.hp1 HG04199.hp1 NA18943.hp1 NA18944.hp1 NA18945.hp1 NA18948.hp1 NA18953.hp1 NA18959.hp1 NA18960.hp1 NA18961.hp1 NA18965.hp1 NA18967.hp1 NA18970.hp1 NA18971.hp1 NA18974.hp1 NA18977.hp1 NA18982.hp1 NA18983.hp1 NA18984.hp1 NA18988.hp1 NA18990.hp1 NA19004.hp1 NA19007.hp1 NA19009.hp1 NA19012.hp1 NA19056.hp1 NA19060.hp1 NA19066.hp1 NA19068.hp1 NA19070.hp1 NA19079.hp1 NA19083.hp1 NA19085.hp1 NA19086.hp1 NA19088.hp1 NA19091.hp1	a0001 a0003 a0004 a0001 a0003 a0004	a0001c0001 a0001c0002 a0001c0004 others(2): Show a0001c0001 a0001c0002 a0001c0004 a0003c0008 a0004c0006	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(48): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 a0001c0001t0006 a0001c0001t0007 a0001c0001t0008 a0001c0001t0009 a0001c0001t0012 a0001c0001t0014 a0001c0001t0015 a0001c0001t0017 a0001c0001t0024 a0001c0001t0027 a0001c0001t0035 a0001c0001t0036 a0001c0001t0041 a0001c0001t0042 a0001c0001t0043 a0001c0001t0048 a0001c0001t0050 a0001c0001t0052 a0001c0001t0053 a0001c0001t0055 a0001c0001t0056 a0001c0001t0057 a0001c0001t0060 a0001c0001t0062 a0001c0001t0063 a0001c0001t0064 a0001c0001t0066 a0001c0001t0067 a0001c0001t0068 a0001c0001t0071 a0001c0001t0073 a0001c0001t0074 a0001c0001t0081 a0001c0001t0083 a0001c0001t0090 a0001c0001t0100 a0001c0001t0104 a0001c0001t0120 a0001c0001t0121 a0001c0001t0122 a0001c0002t0029 a0001c0002t0040 a0001c0002t0082 a0001c0002t0108 a0001c0004t0075 a0003c0008t0045 a0004c0006t0012	a0001c0001t0001g0019 a0001c0001t0001g0036 a0001c0001t0001g0039 others(65): Show a0001c0001t0001g0019 a0001c0001t0001g0036 a0001c0001t0001g0039 a0001c0001t0001g0068 a0001c0001t0002g0020 a0001c0001t0002g0054 a0001c0001t0002g0062 a0001c0001t0003g0063 a0001c0001t0003g0065 a0001c0001t0003g0066 a0001c0001t0004g0041 a0001c0001t0004g0100 a0001c0001t0006g0138 a0001c0001t0006g0163 a0001c0001t0007g0038 a0001c0001t0007g0048 a0001c0001t0007g0089 a0001c0001t0008g0051 a0001c0001t0008g0059 a0001c0001t0008g0073 a0001c0001t0009g0142 a0001c0001t0009g0143 a0001c0001t0012g0168 a0001c0001t0014g0055 a0001c0001t0014g0058 a0001c0001t0015g0032 a0001c0001t0017g0040 a0001c0001t0017g0145 a0001c0001t0024g0091 a0001c0001t0024g0093 a0001c0001t0027g0017 a0001c0001t0035g0078 a0001c0001t0036g0139 a0001c0001t0041g0071 a0001c0001t0042g0012 a0001c0001t0043g0006 a0001c0001t0048g0013 a0001c0001t0050g0026 a0001c0001t0052g0064 a0001c0001t0053g0027 a0001c0001t0055g0025 a0001c0001t0056g0023 a0001c0001t0057g0135 a0001c0001t0060g0067 a0001c0001t0062g0087 a0001c0001t0063g0053 a0001c0001t0064g0084 a0001c0001t0066g0015 a0001c0001t0067g0057 a0001c0001t0068g0169 a0001c0001t0071g0028 a0001c0001t0073g0074 a0001c0001t0074g0033 a0001c0001t0081g0052 a0001c0001t0083g0024 a0001c0001t0090g0099 a0001c0001t0100g0140 a0001c0001t0104g0049 a0001c0001t0120g0035 a0001c0001t0121g0046 a0001c0001t0122g0092 a0001c0002t0029g0149 a0001c0002t0040g0111 a0001c0002t0082g0016 a0001c0002t0108g0002 a0001c0004t0075g0004 a0003c0008t0045g0010 a0004c0006t0012g0011	68	169	0.4024	4	c.104 others(25): Show c.1041+38282_1041+38285dupGTGT	AFF2	ENSG00000155966.14	transcript	ENST00000370460.7	protein_coding	3/20	INFO_REALIGN_3_PRIME	chrX	TogoVar
AFF2_chrX_148495617_149005663	148701014	G G	GAGAA GAGAA	intron_variant intron_variant	MODIFIER	HG02451.hp1 HG03225.hp1 HG02451.hp1 HG03225.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0078 a0001c0002t0107 a0001c0002t0078 a0001c0002t0107	a0001c0002t0078g0152 a0001c0002t0107g0131 a0001c0002t0078g0152 a0001c0002t0107g0131	2	169	0.0118	4	c.104 others(25): Show c.1041+38246_1041+38247insAGAA	AFF2	ENSG00000155966.14	transcript	ENST00000370460.7	protein_coding	3/20		chrX	TogoVar
AFF2_chrX_148495617_149005663	148704460	G G	GTGTA GTGTA	intron_variant intron_variant	MODIFIER	HG01243.hp1 HG02647.hp1 HG02895.hp1 others(3): Show HG01243.hp1 HG02647.hp1 HG02895.hp1 HG03041.hp1 HG03486.hp1 HG03486.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0011 a0001c0001t0044 a0001c0001t0046 others(3): Show a0001c0001t0011 a0001c0001t0044 a0001c0001t0046 a0001c0001t0106 a0001c0002t0094 a0001c0002t0105	a0001c0001t0011g0128 a0001c0001t0044g0127 a0001c0001t0046g0165 others(3): Show a0001c0001t0011g0128 a0001c0001t0044g0127 a0001c0001t0046g0165 a0001c0001t0106g0121 a0001c0002t0094g0106 a0001c0002t0105g0117	6	169	0.0355	4	c.104 others(25): Show c.1041+41693_1041+41694insGTAT	AFF2	ENSG00000155966.14	transcript	ENST00000370460.7	protein_coding	3/20	INFO_REALIGN_3_PRIME	chrX	TogoVar
AFF2_chrX_148495617_149005663	148749947	C C	CTTTA CTTTA	intron_variant intron_variant	MODIFIER	HG00738.hp1 HG01978.hp2 HG02040.hp1 others(10): Show HG00738.hp1 HG01978.hp2 HG02040.hp1 HG02809.hp2 HG03041.hp2 HG03139.hp1 HG03540.hp1 NA18945.hp1 NA18986.hp1 NA19007.hp1 NA19086.hp1 NA20905.hp1 homoSapiens_chm13v2.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0004 a0001c0001 a0001c0002 a0001c0004	a0001c0001t0001 a0001c0001t0004 a0001c0001t0005 others(10): Show a0001c0001t0001 a0001c0001t0004 a0001c0001t0005 a0001c0001t0017 a0001c0001t0021 a0001c0001t0041 a0001c0001t0049 a0001c0001t0081 a0001c0001t0096 a0001c0002t0040 a0001c0002t0072 a0001c0002t0101 a0001c0004t0113	a0001c0001t0001g0036 a0001c0001t0004g0045 a0001c0001t0005g0009 others(10): Show a0001c0001t0001g0036 a0001c0001t0004g0045 a0001c0001t0005g0009 a0001c0001t0017g0145 a0001c0001t0021g0150 a0001c0001t0041g0071 a0001c0001t0049g0105 a0001c0001t0081g0052 a0001c0001t0096g0146 a0001c0002t0040g0111 a0001c0002t0072g0018 a0001c0002t0101g0160 a0001c0004t0113g0159	13	169	0.0769	4	c.104 others(25): Show c.1042-59897_1042-59894dupATTT	AFF2	ENSG00000155966.14	transcript	ENST00000370460.7	protein_coding	3/20	INFO_REALIGN_3_PRIME	chrX	TogoVar
AFF2_chrX_148495617_149005663	148762480	A A	ATGTG ATGTG	intron_variant intron_variant	MODIFIER	HG00738.hp1 HG01243.hp1 HG01255.hp1 others(10): Show HG00738.hp1 HG01243.hp1 HG01255.hp1 HG01358.hp1 HG01978.hp2 HG02647.hp1 HG02698.hp1 HG03041.hp1 HG03139.hp1 HG03486.hp1 NA18945.hp1 NA20752.hp1 homoSapiens_chm13v2.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0004 a0001c0001 a0001c0002 a0001c0004	a0001c0001t0001 a0001c0001t0005 a0001c0001t0011 others(9): Show a0001c0001t0001 a0001c0001t0005 a0001c0001t0011 a0001c0001t0017 a0001c0001t0021 a0001c0001t0044 a0001c0001t0046 a0001c0001t0062 a0001c0001t0071 a0001c0001t0117 a0001c0002t0094 a0001c0004t0113	a0001c0001t0001g0036 a0001c0001t0005g0009 a0001c0001t0005g0022 others(10): Show a0001c0001t0001g0036 a0001c0001t0005g0009 a0001c0001t0005g0022 a0001c0001t0011g0128 a0001c0001t0017g0145 a0001c0001t0021g0150 a0001c0001t0044g0127 a0001c0001t0046g0165 a0001c0001t0062g0087 a0001c0001t0071g0028 a0001c0001t0117g0164 a0001c0002t0094g0106 a0001c0004t0113g0159	13	169	0.0769	4	c.104 others(25): Show c.1042-47370_1042-47367dupGTGT	AFF2	ENSG00000155966.14	transcript	ENST00000370460.7	protein_coding	3/20	INFO_REALIGN_3_PRIME	chrX	TogoVar
AFF2_chrX_148495617_149005663	148773651	G G	GAGGA GAGGA	intron_variant intron_variant	MODIFIER	HG04204.hp1 HG04204.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0119 a0001c0001t0119	a0001c0001t0119g0061 a0001c0001t0119g0061	1	169	0.0059	4	c.104 others(25): Show c.1042-36211_1042-36208dupGGAA	AFF2	ENSG00000155966.14	transcript	ENST00000370460.7	protein_coding	3/20	INFO_REALIGN_3_PRIME	chrX	TogoVar
AFF2_chrX_148495617_149005663	148773669	A A	AGAAG AGAAG	intron_variant intron_variant	MODIFIER	HG01109.hp1 HG02622.hp2 HG01109.hp1 HG02622.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0010 a0001c0001t0089 a0001c0001t0010 a0001c0001t0089	a0001c0001t0010g0124 a0001c0001t0089g0110 a0001c0001t0010g0124 a0001c0001t0089g0110	2	169	0.0118	4	c.104 others(25): Show c.1042-36191_1042-36188dupGGAA	AFF2	ENSG00000155966.14	transcript	ENST00000370460.7	protein_coding	3/20	INFO_REALIGN_3_PRIME	chrX	TogoVar
AFF2_chrX_148495617_149005663	148773685	G G	GGAAA GGAAA	intron_variant intron_variant	MODIFIER	HG00639.hp2 HG01074.hp1 HG01099.hp1 others(20): Show HG00639.hp2 HG01074.hp1 HG01099.hp1 HG01255.hp1 HG01952.hp1 HG02083.hp1 HG02572.hp1 HG02615.hp1 HG02738.hp1 HG03017.hp1 HG03130.hp1 HG03486.hp2 HG04228.hp1 NA18944.hp1 NA18970.hp1 NA18971.hp1 NA19005.hp1 NA19009.hp1 NA19058.hp1 NA19063.hp1 NA19066.hp1 NA20129.hp2 NA20905.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0001c0002 a0001c0004 others(1): Show a0001c0001 a0001c0002 a0001c0004 a0002c0009	a0001c0001t0001 a0001c0001t0003 a0001c0001t0005 others(17): Show a0001c0001t0001 a0001c0001t0003 a0001c0001t0005 a0001c0001t0007 a0001c0001t0009 a0001c0001t0013 a0001c0001t0050 a0001c0001t0053 a0001c0001t0060 a0001c0001t0067 a0001c0001t0071 a0001c0001t0092 a0001c0001t0096 a0001c0001t0114 a0001c0001t0121 a0001c0002t0022 a0001c0002t0105 a0001c0002t0108 a0001c0004t0075 a0002c0009t0103	a0001c0001t0001g0019 a0001c0001t0001g0082 a0001c0001t0003g0065 others(20): Show a0001c0001t0001g0019 a0001c0001t0001g0082 a0001c0001t0003g0065 a0001c0001t0003g0086 a0001c0001t0005g0001 a0001c0001t0005g0021 a0001c0001t0007g0048 a0001c0001t0009g0142 a0001c0001t0013g0034 a0001c0001t0050g0026 a0001c0001t0053g0027 a0001c0001t0060g0067 a0001c0001t0067g0057 a0001c0001t0071g0028 a0001c0001t0092g0008 a0001c0001t0096g0146 a0001c0001t0114g0079 a0001c0001t0121g0046 a0001c0002t0022g0003 a0001c0002t0105g0117 a0001c0002t0108g0002 a0001c0004t0075g0004 a0002c0009t0103g0050	23	169	0.1361	4	c.104 others(25): Show c.1042-36132_1042-36129dupAAGA	AFF2	ENSG00000155966.14	transcript	ENST00000370460.7	protein_coding	3/20	INFO_REALIGN_3_PRIME	chrX	TogoVar
AFF2_chrX_148495617_149005663	148786613	C C	CAGTT CAGTT	intron_variant intron_variant	MODIFIER	HG01109.hp1 HG01934.hp1 HG02622.hp2 others(6): Show HG01109.hp1 HG01934.hp1 HG02622.hp2 HG02717.hp1 HG02896.hp1 HG02976.hp1 HG03540.hp1 HG03540.hp2 NA19240.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0004 a0001c0001 a0001c0002 a0001c0004	a0001c0001t0010 a0001c0001t0020 a0001c0001t0038 others(4): Show a0001c0001t0010 a0001c0001t0020 a0001c0001t0038 a0001c0001t0089 a0001c0002t0032 a0001c0002t0101 a0001c0004t0095	a0001c0001t0010g0115 a0001c0001t0010g0116 a0001c0001t0010g0124 others(6): Show a0001c0001t0010g0115 a0001c0001t0010g0116 a0001c0001t0010g0124 a0001c0001t0020g0109 a0001c0001t0038g0102 a0001c0001t0089g0110 a0001c0002t0032g0114 a0001c0002t0101g0160 a0001c0004t0095g0113	9	169	0.0533	4	c.104 others(25): Show c.1042-23261_1042-23258dupGTTA	AFF2	ENSG00000155966.14	transcript	ENST00000370460.7	protein_coding	3/20	INFO_REALIGN_3_PRIME	chrX	TogoVar
AFF2_chrX_148495617_149005663	148787312	C C	CTGTG CTGTG	intron_variant intron_variant	MODIFIER	HG01243.hp1 HG03486.hp2 HG01243.hp1 HG03486.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0044 a0001c0002t0105 a0001c0001t0044 a0001c0002t0105	a0001c0001t0044g0127 a0001c0002t0105g0117 a0001c0001t0044g0127 a0001c0002t0105g0117	2	169	0.0118	4	c.104 others(25): Show c.1042-22548_1042-22545dupGTGT	AFF2	ENSG00000155966.14	transcript	ENST00000370460.7	protein_coding	3/20	INFO_REALIGN_3_PRIME	chrX	TogoVar
AFF2_chrX_148495617_149005663	148792845	A A	AAAAG AAAAG	intron_variant intron_variant	MODIFIER	HG01891.hp1 HG02257.hp2 HG02258.hp1 others(4): Show HG01891.hp1 HG02257.hp2 HG02258.hp1 HG02647.hp1 HG02886.hp1 HG03098.hp1 HG03540.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0007 a0001c0001 a0001c0002 a0001c0007	a0001c0001t0011 a0001c0001t0066 a0001c0002t0019 others(4): Show a0001c0001t0011 a0001c0001t0066 a0001c0002t0019 a0001c0002t0082 a0001c0002t0101 a0001c0002t0102 a0001c0007t0080	a0001c0001t0011g0128 a0001c0001t0066g0015 a0001c0002t0019g0123 others(4): Show a0001c0001t0011g0128 a0001c0001t0066g0015 a0001c0002t0019g0123 a0001c0002t0082g0016 a0001c0002t0101g0160 a0001c0002t0102g0094 a0001c0007t0080g0162	7	169	0.0414	4	c.104 others(25): Show c.1042-17020_1042-17017dupAGAA	AFF2	ENSG00000155966.14	transcript	ENST00000370460.7	protein_coding	3/20	INFO_REALIGN_3_PRIME	chrX	TogoVar
AFF2_chrX_148495617_149005663	148795800	C C	CAAAA CAAAA	intron_variant intron_variant	MODIFIER	HG03486.hp2 HG03486.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0105 a0001c0002t0105	a0001c0002t0105g0117 a0001c0002t0105g0117	1	169	0.0059	4	c.104 others(25): Show c.1042-14046_1042-14043dupAAAA	AFF2	ENSG00000155966.14	transcript	ENST00000370460.7	protein_coding	3/20	INFO_REALIGN_3_PRIME	chrX	TogoVar
AFF2_chrX_148495617_149005663	148795832	A A	AATAT AATAT	intron_variant intron_variant	MODIFIER	HG01069.hp1 HG01978.hp2 HG02280.hp2 HG01069.hp1 HG01978.hp2 HG02280.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0006 a0001c0001t0021 a0001c0002t0091 a0001c0001t0006 a0001c0001t0021 a0001c0002t0091	a0001c0001t0006g0163 a0001c0001t0021g0150 a0001c0002t0091g0136 a0001c0001t0006g0163 a0001c0001t0021g0150 a0001c0002t0091g0136	3	169	0.0178	4	c.104 others(25): Show c.1042-14006_1042-14003dupTATA	AFF2	ENSG00000155966.14	transcript	ENST00000370460.7	protein_coding	3/20	INFO_REALIGN_3_PRIME	chrX	TogoVar
AFF2_chrX_148495617_149005663	148795872	T T	TATAC TATAC	intron_variant intron_variant	MODIFIER	HG00642.hp1 HG01258.hp1 HG01943.hp1 others(10): Show HG00642.hp1 HG01258.hp1 HG01943.hp1 HG02132.hp1 NA18612.hp1 NA18943.hp1 NA18953.hp1 NA18960.hp1 NA18970.hp1 NA19005.hp1 NA19012.hp1 NA19060.hp1 NA19086.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0008 a0001c0001t0013 others(9): Show a0001c0001t0001 a0001c0001t0008 a0001c0001t0013 a0001c0001t0014 a0001c0001t0015 a0001c0001t0021 a0001c0001t0024 a0001c0001t0041 a0001c0001t0051 a0001c0001t0067 a0001c0001t0068 a0001c0001t0100	a0001c0001t0001g0068 a0001c0001t0008g0059 a0001c0001t0013g0034 others(10): Show a0001c0001t0001g0068 a0001c0001t0008g0059 a0001c0001t0013g0034 a0001c0001t0014g0055 a0001c0001t0014g0058 a0001c0001t0015g0032 a0001c0001t0021g0103 a0001c0001t0024g0091 a0001c0001t0041g0071 a0001c0001t0051g0069 a0001c0001t0067g0057 a0001c0001t0068g0169 a0001c0001t0100g0140	13	169	0.0769	4	c.104 others(25): Show c.1042-14003_1042-14002insTACA	AFF2	ENSG00000155966.14	transcript	ENST00000370460.7	protein_coding	3/20	INFO_REALIGN_3_PRIME	chrX	TogoVar
AFF2_chrX_148495617_149005663	148816933	C C	CAAAA CAAAA	intron_variant intron_variant	MODIFIER	HG02895.hp1 HG02895.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0106 a0001c0001t0106	a0001c0001t0106g0121 a0001c0001t0106g0121	1	169	0.0059	4	c.108 others(23): Show c.1086+7023_1086+7026dupAAAA	AFF2	ENSG00000155966.14	transcript	ENST00000370460.7	protein_coding	4/20	INFO_REALIGN_3_PRIME	chrX	TogoVar
AFF2_chrX_148495617_149005663	148822704	G G	GGTGT GGTGT	intron_variant intron_variant	MODIFIER	HG02257.hp2 HG02280.hp2 HG02818.hp1 others(4): Show HG02257.hp2 HG02280.hp2 HG02818.hp1 HG02895.hp1 HG02965.hp1 HG02976.hp1 NA21309.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0005 a0001c0001 a0001c0002 a0001c0005	a0001c0001t0106 a0001c0002t0009 a0001c0002t0020 others(4): Show a0001c0001t0106 a0001c0002t0009 a0001c0002t0020 a0001c0002t0032 a0001c0002t0091 a0001c0002t0102 a0001c0005t0023	a0001c0001t0106g0121 a0001c0002t0009g0126 a0001c0002t0020g0132 others(4): Show a0001c0001t0106g0121 a0001c0002t0009g0126 a0001c0002t0020g0132 a0001c0002t0032g0114 a0001c0002t0091g0136 a0001c0002t0102g0094 a0001c0005t0023g0129	7	169	0.0414	4	c.108 others(25): Show c.1086+12816_1086+12819dupTGTG	AFF2	ENSG00000155966.14	transcript	ENST00000370460.7	protein_coding	4/20	INFO_REALIGN_3_PRIME	chrX	TogoVar
AFF2_chrX_148495617_149005663	148824060	C C	CCTCT CCTCT	intron_variant intron_variant	MODIFIER	HG00609.hp1 HG00621.hp1 HG00639.hp2 others(85): Show HG00609.hp1 HG00621.hp1 HG00639.hp2 HG00642.hp1 HG00673.hp1 HG01069.hp1 HG01074.hp1 HG01106.hp1 HG01167.hp1 HG01255.hp1 HG01256.hp1 HG01358.hp1 HG01515.hp1 HG01928.hp1 HG01952.hp1 HG01978.hp1 HG02015.hp1 HG02027.hp1 HG02040.hp1 HG02056.hp1 HG02071.hp1 HG02083.hp1 HG02129.hp1 HG02132.hp1 HG02135.hp1 HG02602.hp1 HG02698.hp1 HG02735.hp1 HG02738.hp1 HG02896.hp1 HG03017.hp1 HG03490.hp1 HG03492.hp1 HG03654.hp1 HG03688.hp1 HG03942.hp1 HG04115.hp1 HG04199.hp1 HG04204.hp1 HG04228.hp1 NA18612.hp1 NA18747.hp1 NA18940.hp1 NA18944.hp1 NA18945.hp1 NA18948.hp1 NA18952.hp1 NA18953.hp1 NA18959.hp1 NA18960.hp1 NA18961.hp1 NA18962.hp1 NA18965.hp1 NA18966.hp1 NA18967.hp1 NA18971.hp1 NA18977.hp1 NA18982.hp1 NA18983.hp1 NA18984.hp1 NA18986.hp1 NA18988.hp1 NA18989.hp1 NA18990.hp1 NA18994.hp1 NA19000.hp1 NA19004.hp1 NA19005.hp1 NA19007.hp1 NA19009.hp1 NA19056.hp1 NA19058.hp1 NA19060.hp1 NA19062.hp1 NA19063.hp1 NA19066.hp1 NA19068.hp1 NA19070.hp1 NA19082.hp1 NA19083.hp1 NA19085.hp1 NA19086.hp1 NA19088.hp1 NA19091.hp1 NA20752.hp1 NA20805.hp1 NA20905.hp1 homoSapiens_chm13v2.hp1	a0001 a0002 a0004 a0001 a0002 a0004	a0001c0001 a0001c0004 a0002c0009 others(1): Show a0001c0001 a0001c0004 a0002c0009 a0004c0006	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(58): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 a0001c0001t0005 a0001c0001t0006 a0001c0001t0007 a0001c0001t0009 a0001c0001t0012 a0001c0001t0013 a0001c0001t0015 a0001c0001t0017 a0001c0001t0021 a0001c0001t0024 a0001c0001t0027 a0001c0001t0033 a0001c0001t0036 a0001c0001t0041 a0001c0001t0042 a0001c0001t0043 a0001c0001t0048 a0001c0001t0049 a0001c0001t0050 a0001c0001t0052 a0001c0001t0055 a0001c0001t0057 a0001c0001t0058 a0001c0001t0059 a0001c0001t0060 a0001c0001t0061 a0001c0001t0062 a0001c0001t0063 a0001c0001t0064 a0001c0001t0068 a0001c0001t0069 a0001c0001t0070 a0001c0001t0071 a0001c0001t0073 a0001c0001t0074 a0001c0001t0081 a0001c0001t0083 a0001c0001t0085 a0001c0001t0086 a0001c0001t0088 a0001c0001t0090 a0001c0001t0096 a0001c0001t0099 a0001c0001t0100 a0001c0001t0114 a0001c0001t0115 a0001c0001t0116 a0001c0001t0117 a0001c0001t0118 a0001c0001t0119 a0001c0001t0120 a0001c0001t0121 a0001c0001t0122 a0001c0001t0123 a0001c0004t0095 a0002c0009t0103 a0004c0006t0012	a0001c0001t0001g0019 a0001c0001t0001g0036 a0001c0001t0001g0039 others(85): Show a0001c0001t0001g0019 a0001c0001t0001g0036 a0001c0001t0001g0039 a0001c0001t0001g0068 a0001c0001t0001g0070 a0001c0001t0001g0076 a0001c0001t0001g0082 a0001c0001t0002g0020 a0001c0001t0002g0029 a0001c0001t0002g0054 a0001c0001t0002g0062 a0001c0001t0002g0085 a0001c0001t0002g0166 a0001c0001t0003g0042 a0001c0001t0003g0063 a0001c0001t0003g0065 a0001c0001t0003g0066 a0001c0001t0003g0086 a0001c0001t0004g0041 a0001c0001t0004g0045 a0001c0001t0004g0100 a0001c0001t0005g0001 a0001c0001t0005g0009 a0001c0001t0005g0021 a0001c0001t0005g0022 a0001c0001t0006g0138 a0001c0001t0006g0163 a0001c0001t0007g0038 a0001c0001t0007g0048 a0001c0001t0007g0089 a0001c0001t0009g0142 a0001c0001t0009g0143 a0001c0001t0012g0168 a0001c0001t0013g0034 a0001c0001t0013g0072 a0001c0001t0015g0032 a0001c0001t0015g0060 a0001c0001t0017g0040 a0001c0001t0021g0103 a0001c0001t0024g0091 a0001c0001t0024g0093 a0001c0001t0027g0017 a0001c0001t0033g0083 a0001c0001t0036g0139 a0001c0001t0041g0071 a0001c0001t0042g0012 a0001c0001t0043g0006 a0001c0001t0048g0013 a0001c0001t0049g0105 a0001c0001t0050g0026 a0001c0001t0052g0064 a0001c0001t0055g0025 a0001c0001t0057g0135 a0001c0001t0058g0097 a0001c0001t0059g0014 a0001c0001t0060g0067 a0001c0001t0061g0098 a0001c0001t0062g0087 a0001c0001t0063g0053 a0001c0001t0064g0084 a0001c0001t0068g0169 a0001c0001t0069g0047 a0001c0001t0070g0044 a0001c0001t0071g0028 a0001c0001t0073g0074 a0001c0001t0074g0033 a0001c0001t0081g0052 a0001c0001t0083g0024 a0001c0001t0085g0167 a0001c0001t0086g0031 a0001c0001t0088g0104 a0001c0001t0090g0099 a0001c0001t0096g0146 a0001c0001t0099g0141 a0001c0001t0100g0140 a0001c0001t0114g0079 a0001c0001t0115g0080 a0001c0001t0116g0075 a0001c0001t0117g0164 a0001c0001t0118g0088 a0001c0001t0119g0061 a0001c0001t0120g0035 a0001c0001t0121g0046 a0001c0001t0122g0092 a0001c0001t0123g0090 a0001c0004t0095g0113 a0002c0009t0103g0050 a0004c0006t0012g0011	88	169	0.5207	4	c.108 others(25): Show c.1087-13566_1087-13563dupCTCT	AFF2	ENSG00000155966.14	transcript	ENST00000370460.7	protein_coding	4/20	INFO_REALIGN_3_PRIME	chrX	TogoVar
AFF2_chrX_148495617_149005663	148834505	A A	ATGTG ATGTG	intron_variant intron_variant	MODIFIER	HG01891.hp2 HG02615.hp2 HG03486.hp1 HG01891.hp2 HG02615.hp2 HG03486.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0046 a0001c0001t0110 a0001c0002t0087 a0001c0001t0046 a0001c0001t0110 a0001c0002t0087	a0001c0001t0046g0165 a0001c0001t0110g0118 a0001c0002t0087g0147 a0001c0001t0046g0165 a0001c0001t0110g0118 a0001c0002t0087g0147	3	169	0.0178	4	c.108 others(23): Show c.1087-3102_1087-3099dupGTGT	AFF2	ENSG00000155966.14	transcript	ENST00000370460.7	protein_coding	4/20	INFO_REALIGN_3_PRIME	chrX	TogoVar
AFF2_chrX_148495617_149005663	148839894	G G	GGTGT GGTGT	intron_variant intron_variant	MODIFIER	HG01074.hp1 HG01099.hp1 HG01192.hp1 others(17): Show HG01074.hp1 HG01099.hp1 HG01192.hp1 HG01258.hp1 HG01433.hp1 HG01943.hp1 HG01952.hp1 HG02040.hp1 HG02818.hp1 HG02886.hp2 HG03041.hp2 HG03490.hp1 HG03688.hp1 HG04115.hp1 HG04204.hp1 NA18945.hp1 NA18961.hp1 NA19060.hp1 NA19079.hp1 NA21309.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0001c0002 a0001c0005 others(1): Show a0001c0001 a0001c0002 a0001c0005 a0002c0009	a0001c0001t0001 a0001c0001t0006 a0001c0001t0008 others(14): Show a0001c0001t0001 a0001c0001t0006 a0001c0001t0008 a0001c0001t0036 a0001c0001t0049 a0001c0001t0051 a0001c0001t0053 a0001c0001t0060 a0001c0001t0061 a0001c0001t0073 a0001c0001t0104 a0001c0001t0118 a0001c0001t0119 a0001c0002t0009 a0001c0002t0072 a0001c0005t0023 a0002c0009t0103	a0001c0001t0001g0036 a0001c0001t0001g0068 a0001c0001t0006g0120 others(17): Show a0001c0001t0001g0036 a0001c0001t0001g0068 a0001c0001t0006g0120 a0001c0001t0008g0051 a0001c0001t0008g0059 a0001c0001t0008g0073 a0001c0001t0036g0139 a0001c0001t0049g0105 a0001c0001t0051g0069 a0001c0001t0053g0027 a0001c0001t0060g0067 a0001c0001t0061g0098 a0001c0001t0073g0074 a0001c0001t0104g0049 a0001c0001t0118g0088 a0001c0001t0119g0061 a0001c0002t0009g0126 a0001c0002t0072g0018 a0001c0005t0023g0129 a0002c0009t0103g0050	20	169	0.1183	4	c.117 others(23): Show c.1173+2200_1173+2203dupGTGT	AFF2	ENSG00000155966.14	transcript	ENST00000370460.7	protein_coding	5/20	INFO_REALIGN_3_PRIME	chrX	TogoVar
AFF2_chrX_148495617_149005663	148845120	T T	TACAC TACAC	intron_variant intron_variant	MODIFIER	HG01934.hp1 HG01934.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0010 a0001c0001t0010	a0001c0001t0010g0116 a0001c0001t0010g0116	1	169	0.0059	4	c.126 others(23): Show c.1262+1708_1262+1711dupACAC	AFF2	ENSG00000155966.14	transcript	ENST00000370460.7	protein_coding	7/20	INFO_REALIGN_3_PRIME	chrX	TogoVar
AFF2_chrX_148495617_149005663	148849366	T T	TCCCC TCCCC	intron_variant intron_variant	MODIFIER	HG01978.hp2 HG02257.hp2 HG02451.hp1 others(3): Show HG01978.hp2 HG02257.hp2 HG02451.hp1 HG02572.hp1 HG03098.hp1 HG03209.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0004 a0001c0001 a0001c0002 a0001c0004	a0001c0001t0021 a0001c0002t0078 a0001c0002t0082 others(3): Show a0001c0001t0021 a0001c0002t0078 a0001c0002t0082 a0001c0002t0102 a0001c0002t0111 a0001c0004t0075	a0001c0001t0021g0150 a0001c0002t0078g0152 a0001c0002t0082g0016 others(3): Show a0001c0001t0021g0150 a0001c0002t0078g0152 a0001c0002t0082g0016 a0001c0002t0102g0094 a0001c0002t0111g0096 a0001c0004t0075g0004	6	169	0.0355	4	c.126 others(23): Show c.1262+5950_1262+5953dupCCCC	AFF2	ENSG00000155966.14	transcript	ENST00000370460.7	protein_coding	7/20	INFO_REALIGN_3_PRIME	chrX	TogoVar
AFF2_chrX_148495617_149005663	148852389	G G	GTTTT GTTTT	intron_variant intron_variant	MODIFIER	NA19079.hp1 NA19079.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0008 a0001c0001t0008	a0001c0001t0008g0051 a0001c0001t0008g0051	1	169	0.0059	4	c.126 others(23): Show c.1262+8973_1262+8976dupTTTT	AFF2	ENSG00000155966.14	transcript	ENST00000370460.7	protein_coding	7/20	INFO_REALIGN_3_PRIME	chrX	TogoVar
AFF2_chrX_148495617_149005663	148862224	T T	TGCTA TGCTA	intron_variant intron_variant	MODIFIER	HG02258.hp1 HG02486.hp1 HG02615.hp1 others(7): Show HG02258.hp1 HG02486.hp1 HG02615.hp1 HG02622.hp2 HG02717.hp1 HG02818.hp1 HG02818.hp2 HG03041.hp2 HG03486.hp2 NA19240.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0007 a0001c0001 a0001c0002 a0001c0007	a0001c0001t0020 a0001c0001t0037 a0001c0001t0038 others(7): Show a0001c0001t0020 a0001c0001t0037 a0001c0001t0038 a0001c0001t0089 a0001c0001t0092 a0001c0001t0093 a0001c0002t0009 a0001c0002t0072 a0001c0002t0105 a0001c0007t0080	a0001c0001t0020g0109 a0001c0001t0037g0037 a0001c0001t0038g0102 others(7): Show a0001c0001t0020g0109 a0001c0001t0037g0037 a0001c0001t0038g0102 a0001c0001t0089g0110 a0001c0001t0092g0008 a0001c0001t0093g0007 a0001c0002t0009g0126 a0001c0002t0072g0018 a0001c0002t0105g0117 a0001c0007t0080g0162	10	169	0.0592	4	c.126 others(25): Show c.1262+18793_1262+18796dupCTAG	AFF2	ENSG00000155966.14	transcript	ENST00000370460.7	protein_coding	7/20	INFO_REALIGN_3_PRIME	chrX	TogoVar
AFF2_chrX_148495617_149005663	148883980	T T	TACAC TACAC	intron_variant intron_variant	MODIFIER	HG02895.hp1 HG02895.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0106 a0001c0001t0106	a0001c0001t0106g0121 a0001c0001t0106g0121	1	169	0.0059	4	c.126 others(23): Show c.1263-1886_1263-1883dupACAC	AFF2	ENSG00000155966.14	transcript	ENST00000370460.7	protein_coding	7/20	INFO_REALIGN_3_PRIME	chrX	TogoVar
AFF2_chrX_148495617_149005663	148894888	G G	GATAT GATAT	intron_variant intron_variant	MODIFIER	HG02486.hp1 HG02615.hp1 HG02486.hp1 HG02615.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0092 a0001c0001t0093 a0001c0001t0092 a0001c0001t0093	a0001c0001t0092g0008 a0001c0001t0093g0007 a0001c0001t0092g0008 a0001c0001t0093g0007	2	169	0.0118	4	c.135 others(23): Show c.1359+8906_1359+8907insTATA	AFF2	ENSG00000155966.14	transcript	ENST00000370460.7	protein_coding	8/20	INFO_REALIGN_3_PRIME	chrX	TogoVar
AFF2_chrX_148495617_149005663	148894892	G G	GATAT GATAT	intron_variant intron_variant	MODIFIER	HG02647.hp1 HG02809.hp1 HG03579.hp1 HG02647.hp1 HG02809.hp1 HG03579.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0011 a0001c0001t0035 a0001c0001t0039 a0001c0001t0011 a0001c0001t0035 a0001c0001t0039	a0001c0001t0011g0128 a0001c0001t0035g0078 a0001c0001t0039g0101 a0001c0001t0011g0128 a0001c0001t0035g0078 a0001c0001t0039g0101	3	169	0.0178	4	c.135 others(23): Show c.1359+8910_1359+8911insTATA	AFF2	ENSG00000155966.14	transcript	ENST00000370460.7	protein_coding	8/20	INFO_REALIGN_3_PRIME	chrX	TogoVar
AFF2_chrX_148495617_149005663	148895570	A A	AGTGT AGTGT	intron_variant intron_variant	MODIFIER	HG02280.hp1 HG02280.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0054 a0001c0002t0054	a0001c0002t0054g0133 a0001c0002t0054g0133	1	169	0.0059	4	c.136 others(23): Show c.1360-8626_1360-8623dupGTGT	AFF2	ENSG00000155966.14	transcript	ENST00000370460.7	protein_coding	8/20	INFO_REALIGN_3_PRIME	chrX	TogoVar
AFF2_chrX_148495617_149005663	148897221	C C	CTATA CTATA	intron_variant intron_variant	MODIFIER	HG01243.hp1 NA18948.hp1 NA18984.hp1 HG01243.hp1 NA18948.hp1 NA18984.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0044 a0001c0001t0001 a0001c0001t0002 a0001c0001t0044	a0001c0001t0001g0039 a0001c0001t0002g0062 a0001c0001t0044g0127 a0001c0001t0001g0039 a0001c0001t0002g0062 a0001c0001t0044g0127	3	169	0.0178	4	c.136 others(23): Show c.1360-6952_1360-6949dupATAT	AFF2	ENSG00000155966.14	transcript	ENST00000370460.7	protein_coding	8/20	INFO_REALIGN_3_PRIME	chrX	TogoVar
AFF2_chrX_148495617_149005663	148911075	T T	TTATA TTATA	intron_variant intron_variant	MODIFIER	HG02809.hp2 HG02976.hp1 HG06807.hp2 HG02809.hp2 HG02976.hp1 HG06807.hp2	a0001 a0001	a0001c0002 a0001c0005 a0001c0002 a0001c0005	a0001c0002t0032 a0001c0002t0040 a0001c0005t0023 a0001c0002t0032 a0001c0002t0040 a0001c0005t0023	a0001c0002t0032g0114 a0001c0002t0040g0111 a0001c0005t0023g0125 a0001c0002t0032g0114 a0001c0002t0040g0111 a0001c0005t0023g0125	3	169	0.0178	4	c.139 others(23): Show c.1397+6833_1397+6836dupATAT	AFF2	ENSG00000155966.14	transcript	ENST00000370460.7	protein_coding	9/20	INFO_REALIGN_3_PRIME	chrX	TogoVar
AFF2_chrX_148495617_149005663	148935396	T T	TACAC TACAC	intron_variant intron_variant	MODIFIER	HG02647.hp1 NA21309.hp1 HG02647.hp1 NA21309.hp1	a0001 a0001	a0001c0001 a0001c0005 a0001c0001 a0001c0005	a0001c0001t0011 a0001c0005t0023 a0001c0001t0011 a0001c0005t0023	a0001c0001t0011g0128 a0001c0005t0023g0129 a0001c0001t0011g0128 a0001c0005t0023g0129	2	169	0.0118	4	c.139 others(25): Show c.1398-18164_1398-18161dupCACA	AFF2	ENSG00000155966.14	transcript	ENST00000370460.7	protein_coding	9/20	INFO_REALIGN_3_PRIME	chrX	TogoVar
AFF2_chrX_148495617_149005663	148953798	A A	AACAC AACAC	intron_variant intron_variant	MODIFIER	HG02451.hp1 HG02622.hp1 HG02630.hp1 others(2): Show HG02451.hp1 HG02622.hp1 HG02630.hp1 HG03486.hp2 NA19240.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0018 a0001c0002t0034 a0001c0002t0078 others(1): Show a0001c0002t0018 a0001c0002t0034 a0001c0002t0078 a0001c0002t0105	a0001c0002t0018g0151 a0001c0002t0018g0156 a0001c0002t0034g0077 others(2): Show a0001c0002t0018g0151 a0001c0002t0018g0156 a0001c0002t0034g0077 a0001c0002t0078g0152 a0001c0002t0105g0117	5	169	0.0296	4	c.155 others(19): Show c.1557+71_1557+74dupCACA	AFF2	ENSG00000155966.14	transcript	ENST00000370460.7	protein_coding	10/20	INFO_REALIGN_3_PRIME	chrX	TogoVar
AFF2_chrX_148495617_149005663	148971126	G G	GTTTT GTTTT	intron_variant intron_variant	MODIFIER	HG01891.hp2 HG02486.hp1 HG02615.hp1 others(3): Show HG01891.hp2 HG02486.hp1 HG02615.hp1 HG02809.hp1 HG03041.hp1 HG03486.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0035 a0001c0001t0046 a0001c0001t0092 others(3): Show a0001c0001t0035 a0001c0001t0046 a0001c0001t0092 a0001c0001t0093 a0001c0001t0110 a0001c0002t0094	a0001c0001t0035g0078 a0001c0001t0046g0165 a0001c0001t0092g0008 others(3): Show a0001c0001t0035g0078 a0001c0001t0046g0165 a0001c0001t0092g0008 a0001c0001t0093g0007 a0001c0001t0110g0118 a0001c0002t0094g0106	6	169	0.0355	4	c.326 others(23): Show c.3268-2329_3268-2326dupTTTT	AFF2	ENSG00000155966.14	transcript	ENST00000370460.7	protein_coding	15/20	INFO_REALIGN_3_PRIME	chrX	TogoVar
AFF2_chrX_148495617_149005663	148975943	C C	CAAAA CAAAA	intron_variant intron_variant	MODIFIER	HG01891.hp2 HG03041.hp1 HG03486.hp1 HG01891.hp2 HG03041.hp1 HG03486.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0046 a0001c0001t0110 a0001c0002t0094 a0001c0001t0046 a0001c0001t0110 a0001c0002t0094	a0001c0001t0046g0165 a0001c0001t0110g0118 a0001c0002t0094g0106 a0001c0001t0046g0165 a0001c0001t0110g0118 a0001c0002t0094g0106	3	169	0.0178	4	c.340 others(23): Show c.3405-1972_3405-1969dupAAAA	AFF2	ENSG00000155966.14	transcript	ENST00000370460.7	protein_coding	16/20	INFO_REALIGN_3_PRIME	chrX	TogoVar
AFF2_chrX_148495617_149005663	148977614	G G	GACAC GACAC	intron_variant intron_variant	MODIFIER	HG01109.hp1 HG01934.hp1 HG02258.hp1 others(3): Show HG01109.hp1 HG01934.hp1 HG02258.hp1 HG03471.hp1 HG03540.hp2 NA21309.hp2	a0001 a0001	a0001c0001 a0001c0007 a0001c0001 a0001c0007	a0001c0001t0010 a0001c0001t0022 a0001c0001t0025 others(1): Show a0001c0001t0010 a0001c0001t0022 a0001c0001t0025 a0001c0007t0080	a0001c0001t0010g0115 a0001c0001t0010g0116 a0001c0001t0010g0124 others(3): Show a0001c0001t0010g0115 a0001c0001t0010g0116 a0001c0001t0010g0124 a0001c0001t0022g0134 a0001c0001t0025g0081 a0001c0007t0080g0162	6	169	0.0355	4	c.340 others(21): Show c.3405-278_3405-275dupACAC	AFF2	ENSG00000155966.14	transcript	ENST00000370460.7	protein_coding	16/20	INFO_REALIGN_3_PRIME	chrX	TogoVar

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