Joint Open Genome and Omics Platform (JoGo)

Search by Variant

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Chr

Chromosome name (e.g., chr11).

Snpeff genename

Exact SnpEff gene name.

Sampleids

Target sampleid (e.g. HG02615).

Snpeff haplotype class

Haplotype-annotation class (e.g., ahapid, ahapid+chapid).

Snpeff annotation impact

Exact impact level (e.g., HIGH, MODERATE, LOW).

Snpeff annotation impact detail

Keyword match in SnpEff annotation.

Hapid

One or more haplotype IDs (comma-separated; e.g., a0001, a01, a0001c0001, a01c02, a1c2, a0001c0001t0005, a0001c0001t0005g0018).

Samplehapid

Sample haplotype IDs to include (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

No_hapid

Haplotype IDs to exclude (comma-separated; e.g., a0001, a0002, a0001c0001, a0001c0001t0005, a1, a01).

No_samplehapid

Sample haplotype IDs to exclude (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

Start

Start position (GRCh38).

End

End position (GRCh38).

Minac

Minimum alternate allele count (≥).

Maxac

Maximum alternate allele count (≤).

Minlen

Minimum variant length (≥).

Maxlen

Maximum variant length (≤).

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regionname	pos	ref	alt	annotation	impact	samples	ahapids	achapids	acthapids	actghapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	external
TRAK1_chr3_42086357_42230890	42093664	T T	TCCCTTCC others(33): Show TCCCTTCCCTTCCCTTCCCTTCCCTCCCCTCCCCTCCCCTC	intron_variant intron_variant	MODIFIER	HG00544.hp1 HG04184.hp2 NA18950.hp1 others(3): Show HG00544.hp1 HG04184.hp2 NA18950.hp1 NA18951.hp2 NA18999.hp2 NA19066.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0004 a0001c0001 a0001c0002 a0001c0004	a0001c0001t0001 a0001c0001t0002 a0001c0001t0004 others(2): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0004 a0001c0002t0001 a0001c0004t0006	a0001c0001t0001g0264 a0001c0001t0002g0003 a0001c0001t0004g0278 others(3): Show a0001c0001t0001g0264 a0001c0001t0002g0003 a0001c0001t0004g0278 a0001c0001t0004g0279 a0001c0002t0001g0277 a0001c0004t0006g0280	6	288	0.0208	40	c.91+ others(55): Show c.91+2108_91+2109insTCCCTTCCCTTCCCTTCCCTCCCCTCCCCT CCCCTCCCCT	TRAK1	ENSG00000182606.17	transcript	ENST00000327628.10	protein_coding	1/15		INFO_REALIGN_3_PRIME	chr3	TogoVar
TRAK1_chr3_42086357_42230890	42093664	T T	TCCCTTCC others(33): Show TCCCTTCCCTTCCCTTCCCTTCCCTTCCCTCCCCTCCCCTC	intron_variant intron_variant	MODIFIER	HG00280.hp1 HG01069.hp2 HG01081.hp2 others(3): Show HG00280.hp1 HG01069.hp2 HG01081.hp2 HG01361.hp2 HG03704.hp2 homoSapiens_chm13v2.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0003 others(2): Show a0001c0001 a0001c0002 a0001c0003 a0001c0005 a0001c0009	a0001c0001t0002 a0001c0001t0004 a0001c0002t0001 others(3): Show a0001c0001t0002 a0001c0001t0004 a0001c0002t0001 a0001c0003t0010 a0001c0005t0005 a0001c0009t0001	a0001c0001t0002g0170 a0001c0001t0004g0180 a0001c0002t0001g0169 others(3): Show a0001c0001t0002g0170 a0001c0001t0004g0180 a0001c0002t0001g0169 a0001c0003t0010g0164 a0001c0005t0005g0182 a0001c0009t0001g0171	6	288	0.0208	40	c.91+ others(55): Show c.91+2108_91+2109insTCCCTTCCCTTCCCTTCCCTTCCCTCCCCT CCCCTCCCCT	TRAK1	ENSG00000182606.17	transcript	ENST00000327628.10	protein_coding	1/15		INFO_REALIGN_3_PRIME	chr3	TogoVar
TRAK1_chr3_42086357_42230890	42226072	C C	CTTTTTTT others(33): Show CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	downstream_gene_variant downstream_gene_variant	MODIFIER	NA18906.hp2 NA18906.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0007 a0001c0001t0007	a0001c0001t0007g0137 a0001c0001t0007g0137	1	288	0.0035	40	c.23 others(51): Show c.2335_*2336insTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT TTTTTT	TRAK1	ENSG00000182606.17	transcript	ENST00000327628.10	protein_coding		183		chr3	TogoVar
TRAM2_chr6_52492408_52582060	52493365	C C	CATATATA others(33): Show CATATATATATATATATATATATATATATATATATATATAT	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00735.hp1 HG01168.hp1 HG01169.hp2 others(2): Show HG00735.hp1 HG01168.hp1 HG01169.hp2 HG03130.hp1 NA20905.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0009 a0001c0001t0003 a0001c0001t0009	a0001c0001t0003g0062 a0001c0001t0003g0077 a0001c0001t0003g0095 others(2): Show a0001c0001t0003g0062 a0001c0001t0003g0077 a0001c0001t0003g0095 a0001c0001t0009g0087 a0001c0001t0009g0232	5	378	0.0132	40	c.98 others(51): Show c.9831_*9832insATATATATATATATATATATATATATATATATAT ATATAT	TRAM2	ENSG00000065308.5	transcript	ENST00000182527.4	protein_coding		4042		chr6	TogoVar
TRAM2_chr6_52492408_52582060	52493369	T T	TATATATA others(33): Show TATATATATATATATATATATATATATATATATATATATAC	downstream_gene_variant downstream_gene_variant	MODIFIER	NA19043.hp2 NA19043.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0068 a0001c0001t0068	a0001c0001t0068g0313 a0001c0001t0068g0313	1	378	0.0027	40	c.98 others(51): Show c.9827_*9828insGTATATATATATATATATATATATATATATATAT ATATAT	TRAM2	ENSG00000065308.5	transcript	ENST00000182527.4	protein_coding		4038		chr6	TogoVar
TRAPPC2L_chr16_88852127_88867678	88862399	G G	GTTATATG others(33): Show GTTATATGTTTTTTTATTTTTTTTTTTTGTACTTATTTATT	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	NA18991.hp2 NA18991.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0028 a0001c0002t0028	a0001c0002t0028g0041 a0001c0002t0028g0041	1	450	0.0022	40	c.14 others(51): Show c.1441_*1442insTATATGTTTTTTTATTTTTTTTTTTTGTACTTAT TTATTT	TRAPPC2L	ENSG00000167515.11	transcript	ENST00000696289.1	protein_coding	5/5	1442	INFO_REALIGN_3_PRIME	chr16	TogoVar
TRAPPC3L_chr6_116489989_116550684	116494961	A A	ATATATAT others(33): Show ATATATATATATATATATATATATATATATATTTTTTTTTT	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02723.hp2 HG02723.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0312 a0001c0001t0001g0312	1	360	0.0028	40	c.19 others(51): Show c.1992_*1993insAAAAAAAAAATATATATATATATATATATATATA TATATA	TRAPPC3L	ENSG00000173626.10	transcript	ENST00000368602.4	protein_coding		27		chr6	TogoVar
TRAPPC9_chr8_139722725_140462744	139947907	T T	TATATATA others(33): Show TATATATATATATATATATATATATATAGAGAGAGAGAGAG	intron_variant intron_variant	MODIFIER	HG00642.hp2 HG00642.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0071 a0001c0001t0001g0071	1	98	0.0102	40	c.281 others(61): Show c.2811-37608_2811-37607insCTCTCTCTCTCTCTATATATATAT ATATATATATATATAT	TRAPPC9	ENSG00000167632.18	transcript	ENST00000438773.4	protein_coding	19/22			chr8	TogoVar
TRAPPC9_chr8_139722725_140462744	140156961	T T	TTTCCATT others(33): Show TTTCCATTCAAAAGCCTCCCTTTTCCATTCAAAAGCCTCCC	intron_variant intron_variant	MODIFIER	HG01433.hp1 HG01433.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0003 a0001c0002t0003	a0001c0002t0003g0006 a0001c0002t0003g0006	1	98	0.0102	40	c.255 others(61): Show c.2556+64497_2556+64498insGGGAGGCTTTTGAATGGAAAAGGG AGGCTTTTGAATGGAA	TRAPPC9	ENSG00000167632.18	transcript	ENST00000438773.4	protein_coding	17/22			chr8	TogoVar
TRAPPC9_chr8_139722725_140462744	140157002	T T	TTTCCATT others(33): Show TTTCCATTCAAAAGCCTCCCTTTTCCATTCAAAAGCCTCCC	intron_variant intron_variant	MODIFIER	HG01192.hp2 HG01192.hp2	a0001 a0001	a0001c0006 a0001c0006	a0001c0006t0006 a0001c0006t0006	a0001c0006t0006g0024 a0001c0006t0006g0024	1	98	0.0102	40	c.255 others(61): Show c.2556+64456_2556+64457insGGGAGGCTTTTGAATGGAAAAGGG AGGCTTTTGAATGGAA	TRAPPC9	ENSG00000167632.18	transcript	ENST00000438773.4	protein_coding	17/22			chr8	TogoVar
TRAPPC9_chr8_139722725_140462744	140157023	T T	TTTCCATT others(33): Show TTTCCATTCAAAAGCCTCCCTTTTCCATTCAAAAGCCTCCC	intron_variant intron_variant	MODIFIER	NA19030.hp1 NA19030.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0002 a0001c0002t0002	a0001c0002t0002g0039 a0001c0002t0002g0039	1	98	0.0102	40	c.255 others(61): Show c.2556+64435_2556+64436insGGGAGGCTTTTGAATGGAAAAGGG AGGCTTTTGAATGGAA	TRAPPC9	ENSG00000167632.18	transcript	ENST00000438773.4	protein_coding	17/22			chr8	TogoVar
TRAPPC9_chr8_139722725_140462744	140157023	T T	TTTCCATT others(33): Show TTTCCATTCAGAAGCCTCCCTTTTCCATTCAGAAGCCTCCC	intron_variant intron_variant	MODIFIER	HG01891.hp2 HG01891.hp2	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0002 a0001c0003t0002	a0001c0003t0002g0046 a0001c0003t0002g0046	1	98	0.0102	40	c.255 others(61): Show c.2556+64435_2556+64436insGGGAGGCTTCTGAATGGAAAAGGG AGGCTTCTGAATGGAA	TRAPPC9	ENSG00000167632.18	transcript	ENST00000438773.4	protein_coding	17/22			chr8	TogoVar
TRAPPC9_chr8_139722725_140462744	140157126	T T	TTTCCATT others(33): Show TTTCCATTCAAAAGCCTCCCTTTTCCATTCAAAAGCCTCCC	intron_variant intron_variant	MODIFIER	HG03139.hp1 HG03139.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0029 a0001c0001t0029	a0001c0001t0029g0077 a0001c0001t0029g0077	1	98	0.0102	40	c.255 others(61): Show c.2556+64332_2556+64333insGGGAGGCTTTTGAATGGAAAAGGG AGGCTTTTGAATGGAA	TRAPPC9	ENSG00000167632.18	transcript	ENST00000438773.4	protein_coding	17/22			chr8	TogoVar
TRAPPC9_chr8_139722725_140462744	140196631	A A	ACGATCCA others(33): Show ACGATCCACCATACAGATCACACCTGTGACACTAAAACACT	intron_variant intron_variant	MODIFIER	HG02809.hp2 HG02809.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0002 a0001c0002t0002	a0001c0002t0002g0016 a0001c0002t0002g0016	1	98	0.0102	40	c.255 others(61): Show c.2556+24827_2556+24828insAGTGTTTTAGTGTCACAGGTGTGA TCTGTATGGTGGATCG	TRAPPC9	ENSG00000167632.18	transcript	ENST00000438773.4	protein_coding	17/22			chr8	TogoVar
TRDN_chr6_123211339_123641950	123283985	C C	CATATATA others(33): Show CATATATATATATATATATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG02280.hp1 HG02451.hp2 HG02615.hp1 others(3): Show HG02280.hp1 HG02451.hp2 HG02615.hp1 HG02886.hp1 HG02922.hp1 HG03209.hp1	a0001 a0003 a0005 others(2): Show a0001 a0003 a0005 a0010 a0011	a0001c0001 a0003c0003 a0005c0006 others(2): Show a0001c0001 a0003c0003 a0005c0006 a0010c0012 a0011c0017	a0001c0001t0001 a0001c0001t0006 a0003c0003t0012 others(3): Show a0001c0001t0001 a0001c0001t0006 a0003c0003t0012 a0005c0006t0002 a0010c0012t0004 a0011c0017t0002	a0001c0001t0001g0001 a0001c0001t0006g0089 a0003c0003t0012g0133 others(3): Show a0001c0001t0001g0001 a0001c0001t0006g0089 a0003c0003t0012g0133 a0005c0006t0002g0040 a0010c0012t0004g0014 a0011c0017t0002g0116	6	152	0.0395	40	c.151 others(59): Show c.1511-4904_1511-4903insATATATATATATATATATATATATAT ATATATATATATAT	TRDN	ENSG00000186439.15	transcript	ENST00000334268.9	protein_coding	24/40			chr6	TogoVar
TRDN_chr6_123211339_123641950	123499719	A A	AAAAAAAA others(33): Show AAAAAAAAAAAAAAAAAAAAAAAATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG04184.hp1 HG04184.hp1	a0031 a0031	a0031c0022 a0031c0022	a0031c0022t0013 a0031c0022t0013	a0031c0022t0013g0094 a0031c0022t0013g0094	1	152	0.0066	40	c.794 others(57): Show c.794-2468_794-2467insATATATATATATATATATTTTTTTTTTT TTTTTTTTTTTT	TRDN	ENSG00000186439.15	transcript	ENST00000334268.9	protein_coding	8/40			chr6	TogoVar
TRDN_chr6_123211339_123641950	123499719	A A	AAAAAAAA others(33): Show AAAAAAAAAAAAAAAAAATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG02109.hp1 HG02257.hp1 HG03516.hp2 others(1): Show HG02109.hp1 HG02257.hp1 HG03516.hp2 NA18522.hp2	a0001 a0002 a0003 others(1): Show a0001 a0002 a0003 a0027	a0001c0001 a0002c0004 a0003c0003 others(1): Show a0001c0001 a0002c0004 a0003c0003 a0027c0025	a0001c0001t0001 a0002c0004t0006 a0003c0003t0004 others(1): Show a0001c0001t0001 a0002c0004t0006 a0003c0003t0004 a0027c0025t0001	a0001c0001t0001g0106 a0002c0004t0006g0103 a0003c0003t0004g0134 others(1): Show a0001c0001t0001g0106 a0002c0004t0006g0103 a0003c0003t0004g0134 a0027c0025t0001g0105	4	152	0.0263	40	c.794 others(57): Show c.794-2468_794-2467insATATATATATATATATATATATATTTTT TTTTTTTTTTTT	TRDN	ENSG00000186439.15	transcript	ENST00000334268.9	protein_coding	8/40			chr6	TogoVar
TRDN_chr6_123211339_123641950	123551203	G G	GATATATA others(33): Show GATATATATATATATATATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	NA18522.hp2 NA18522.hp2	a0002 a0002	a0002c0004 a0002c0004	a0002c0004t0006 a0002c0004t0006	a0002c0004t0006g0103 a0002c0004t0006g0103	1	152	0.0066	40	c.233 others(57): Show c.233-2592_233-2591insATATATATATATATATATATATATATAT ATATATATATAT	TRDN	ENSG00000186439.15	transcript	ENST00000334268.9	protein_coding	2/40			chr6	TogoVar
TRERF1_chr6_42219931_42456926	42299116	C C	CTGTCTGT others(33): Show CTGTCTGTCTGTATCTATCTATCTATCTATCTATCTATCTA	intron_variant intron_variant	MODIFIER	HG02451.hp2 HG02922.hp1 HG03209.hp1 others(2): Show HG02451.hp2 HG02922.hp1 HG03209.hp1 HG03453.hp1 NA20129.hp2	a0001 a0002 a0014 a0001 a0002 a0014	a0001c0001 a0001c0002 a0001c0009 others(2): Show a0001c0001 a0001c0002 a0001c0009 a0002c0013 a0014c0032	a0001c0001t0004 a0001c0002t0020 a0001c0009t0002 others(2): Show a0001c0001t0004 a0001c0002t0020 a0001c0009t0002 a0002c0013t0017 a0014c0032t0016	a0001c0001t0004g0168 a0001c0002t0020g0175 a0001c0009t0002g0006 others(2): Show a0001c0001t0004g0168 a0001c0002t0020g0175 a0001c0009t0002g0006 a0002c0013t0017g0005 a0014c0032t0016g0049	5	180	0.0278	40	c.-25 others(59): Show c.-259+1521_-259+1522insTAGATAGATAGATAGATAGATAGATA GATACAGACAGACA	TRERF1	ENSG00000124496.13	transcript	ENST00000695948.1	protein_coding	4/17			chr6	TogoVar
TRERF1_chr6_42219931_42456926	42299116	C C	CTGTCTGT others(33): Show CTGTCTGTCTGTCTCTATCTATCTATCTATCTATCTATCTA	intron_variant intron_variant	MODIFIER	HG03225.hp1 HG03225.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0016 a0001c0001t0016	a0001c0001t0016g0152 a0001c0001t0016g0152	1	180	0.0056	40	c.-25 others(59): Show c.-259+1521_-259+1522insTAGATAGATAGATAGATAGATAGATA GAGACAGACAGACA	TRERF1	ENSG00000124496.13	transcript	ENST00000695948.1	protein_coding	4/17			chr6	TogoVar
TRERF1_chr6_42219931_42456926	42299116	C C	CTGTCTGT others(33): Show CTGTCTGTCTGTCTGTCTCTATCTATCTATCTATCTATCTA	intron_variant intron_variant	MODIFIER	HG02622.hp1 HG02622.hp1	a0010 a0010	a0010c0027 a0010c0027	a0010c0027t0001 a0010c0027t0001	a0010c0027t0001g0070 a0010c0027t0001g0070	1	180	0.0056	40	c.-25 others(59): Show c.-259+1521_-259+1522insTAGATAGATAGATAGATAGATAGAGA CAGACAGACAGACA	TRERF1	ENSG00000124496.13	transcript	ENST00000695948.1	protein_coding	4/17			chr6	TogoVar
TRERF1_chr6_42219931_42456926	42299116	C C	CTGTCTGT others(33): Show CTGTCTGTCTGTCTGTCTGTATCTATCTATCTATCTATCTA	intron_variant intron_variant	MODIFIER	HG01192.hp2 HG01243.hp2 HG01192.hp2 HG01243.hp2	a0001 a0001	a0001c0001 a0001c0007 a0001c0001 a0001c0007	a0001c0001t0004 a0001c0007t0001 a0001c0001t0004 a0001c0007t0001	a0001c0001t0004g0039 a0001c0007t0001g0131 a0001c0001t0004g0039 a0001c0007t0001g0131	2	180	0.0111	40	c.-25 others(59): Show c.-259+1521_-259+1522insTAGATAGATAGATAGATAGATACAGA CAGACAGACAGACA	TRERF1	ENSG00000124496.13	transcript	ENST00000695948.1	protein_coding	4/17			chr6	TogoVar
TRERF1_chr6_42219931_42456926	42299116	C C	CTGTCTGT others(33): Show CTGTCTGTCTGTCTGTCTGTCTGTATCTATCTATCTATCTA	intron_variant intron_variant	MODIFIER	HG01891.hp1 HG02258.hp2 HG03225.hp2 HG01891.hp1 HG02258.hp2 HG03225.hp2	a0001 a0016 a0001 a0016	a0001c0001 a0016c0019 a0001c0001 a0016c0019	a0001c0001t0001 a0001c0001t0002 a0016c0019t0001 a0001c0001t0001 a0001c0001t0002 a0016c0019t0001	a0001c0001t0001g0153 a0001c0001t0002g0029 a0016c0019t0001g0022 a0001c0001t0001g0153 a0001c0001t0002g0029 a0016c0019t0001g0022	3	180	0.0167	40	c.-25 others(59): Show c.-259+1521_-259+1522insTAGATAGATAGATAGATACAGACAGA CAGACAGACAGACA	TRERF1	ENSG00000124496.13	transcript	ENST00000695948.1	protein_coding	4/17			chr6	TogoVar
TRH_chr3_129969720_129982935	129971770	A A	AAGGGAGG others(33): Show AAGGGAGGGAGGGAGGAAGGGAGGGAGGGAGGGAGGGAGGG	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00741.hp1 HG02976.hp2 HG00741.hp1 HG02976.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0002 a0001c0001t0001g0002	2	416	0.0048	40	c.-30 others(51): Show c.-3062_-3061insAGGGAGGGAGGGAGGAAGGGAGGGAGGGAGGGAG GGAGGG	TRH	ENSG00000170893.4	transcript	ENST00000302649.4	protein_coding		2949		chr3	TogoVar
TRIM13_chr13_49992042_50023467	49996875	G G	GAAGGGAG others(33): Show GAAGGGAGGGGGAGGGGGAGGGGAAAGGGAGGGGGAGGGGA	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01891.hp1 HG02109.hp1 HG02109.hp2 others(5): Show HG01891.hp1 HG02109.hp1 HG02109.hp2 HG02615.hp2 HG02717.hp2 HG03139.hp1 HG03486.hp2 HG03540.hp2	a0001 a0004 a0001 a0004	a0001c0001 a0004c0006 a0001c0001 a0004c0006	a0001c0001t0003 a0001c0001t0061 a0001c0001t0080 others(2): Show a0001c0001t0003 a0001c0001t0061 a0001c0001t0080 a0001c0001t0081 a0004c0006t0069	a0001c0001t0003g0003 a0001c0001t0003g0132 a0001c0001t0003g0171 others(5): Show a0001c0001t0003g0003 a0001c0001t0003g0132 a0001c0001t0003g0171 a0001c0001t0003g0181 a0001c0001t0061g0189 a0001c0001t0080g0165 a0001c0001t0081g0174 a0004c0006t0069g0190	8	390	0.0205	40	c.-89 others(49): Show c.-895_-894insAAGGGAGGGGGAGGGGGAGGGGAAAGGGAGGGGGAG GGGA	TRIM13	ENSG00000204977.10	transcript	ENST00000378182.4	protein_coding		166		chr13	TogoVar
TRIM14_chr9_98079353_98124222	98110848	A A	AAAAATAA others(33): Show AAAAATAAAATAAAATAAAATAAAATAAAATAAAATAAAAT	intron_variant intron_variant	MODIFIER	HG02818.hp1 HG02818.hp1	a0001 a0001	a0001c0006 a0001c0006	a0001c0006t0011 a0001c0006t0011	a0001c0006t0011g0042 a0001c0006t0011g0042	1	352	0.0028	40	c.208 others(55): Show c.208-904_208-865dupATTTTATTTTATTTTATTTTATTTTATTTT ATTTTATTTT	TRIM14	ENSG00000106785.15	transcript	ENST00000341469.7	protein_coding	1/5			chr9	TogoVar
TRIM21_chr11_4379897_4398702	4392567	A A	AAAAACAA others(33): Show AAAAACAAAACAAAACAAAACAAAACAAAACAAAACAAAAC	intron_variant intron_variant	MODIFIER	HG02735.hp2 HG02970.hp1 HG02735.hp2 HG02970.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0004 a0001c0002t0005 a0001c0002t0004 a0001c0002t0005	a0001c0002t0004g0111 a0001c0002t0005g0110 a0001c0002t0004g0111 a0001c0002t0005g0110	2	478	0.0042	40	c.-50 others(57): Show c.-50+1065_-50+1066insGTTTTGTTTTGTTTTGTTTTGTTTTGTT TTGTTTTGTTTT	TRIM21	ENSG00000132109.10	transcript	ENST00000254436.8	protein_coding	1/6			chr11	TogoVar
TRIM24_chr7_138455259_138594996	138508700	C C	CGCGCGCG others(33): Show CGCGCGCGCGCGCGTGTGTGCGTGTGTGTGTGTGCGTGTGT	intron_variant intron_variant	MODIFIER	NA18986.hp1 NA18986.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0044 a0001c0001t0001g0044	1	312	0.0032	40	c.483 others(57): Show c.483+4293_483+4294insCGCGCGCGCGCGTGTGTGCGTGTGTGTG TGTGCGTGTGTG	TRIM24	ENSG00000122779.18	transcript	ENST00000343526.9	protein_coding	2/18		INFO_REALIGN_3_PRIME	chr7	TogoVar
TRIM31_chr6_30097897_30118090	30099075	A A	AAAAGAAA others(33): Show AAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	downstream_gene_variant downstream_gene_variant	MODIFIER	NA19056.hp1 NA19056.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0179 a0001c0001t0001g0179	1	445	0.0023	40	c.44 others(51): Show c.4460_*4461insCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCT TTCTTT	TRIM31	ENSG00000204616.11	transcript	ENST00000376734.4	protein_coding		3821		chr6	TogoVar
TRIM34_chr11_5620001_5649398	5645918	T T	TATATCTA others(33): Show TATATCTATATATAGATATATATATATATATCTATATATAG	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02615.hp2 HG02615.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0058 a0001c0001t0001g0058	1	426	0.0024	40	c.22 others(51): Show c.2209_*2210insATATCTATATATAGATATATATATATATATCTAT ATATAG	TRIM34	ENSG00000258659.7	transcript	ENST00000429814.3	protein_coding		1521		chr11	TogoVar
TRIM56_chr7_101080481_101102967	101092471	C C	CCAGCCGC others(33): Show CCAGCCGCCCCATCTGAGAAGTGAGGAGCCCCTCCGCCTGG	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG06807.hp1 HG06807.hp1	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0091 a0001c0003t0091	a0001c0003t0091g0003 a0001c0003t0091g0003	1	420	0.0024	40	c.29 others(51): Show c.2901_*2902insATCTGAGAAGTGAGGAGCCCCTCCGCCTGGCAGC CGCCCC	TRIM56	ENSG00000169871.13	transcript	ENST00000306085.11	protein_coding	3/3	2902	INFO_REALIGN_3_PRIME	chr7	TogoVar
TRIM56_chr7_101080481_101102967	101092471	C C	CCAGCCGC others(33): Show CCAGCCGCCCCGTCTGAGAAGTGAGGAGCCCCTCCGCCTGG	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG00438.hp1 HG01109.hp1 HG01361.hp2 others(37): Show HG00438.hp1 HG01109.hp1 HG01361.hp2 HG01884.hp2 HG01978.hp1 HG02015.hp1 HG02080.hp2 HG02109.hp2 HG02280.hp1 HG02559.hp1 HG02572.hp1 HG02622.hp2 HG02630.hp1 HG02630.hp2 HG02647.hp2 HG02818.hp1 HG02922.hp2 HG02976.hp2 HG03041.hp2 HG03130.hp2 HG03239.hp2 HG03540.hp2 HG03704.hp1 HG03710.hp1 NA18522.hp2 NA18940.hp1 NA18944.hp2 NA18951.hp2 NA18960.hp2 NA18963.hp1 NA18984.hp1 NA18989.hp1 NA18991.hp1 NA18992.hp1 NA19002.hp2 NA19003.hp1 NA19004.hp1 NA19055.hp1 NA19077.hp1 NA19091.hp1	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0005 a0001c0003t0010 a0001c0003t0026 others(9): Show a0001c0003t0005 a0001c0003t0010 a0001c0003t0026 a0001c0003t0066 a0001c0003t0069 a0001c0003t0097 a0001c0003t0098 a0001c0003t0099 a0001c0003t0100 a0001c0003t0101 a0001c0003t0104 a0001c0003t0117	a0001c0003t0005g0003 a0001c0003t0005g0007 a0001c0003t0005g0015 others(14): Show a0001c0003t0005g0003 a0001c0003t0005g0007 a0001c0003t0005g0015 a0001c0003t0010g0003 a0001c0003t0010g0007 a0001c0003t0010g0009 a0001c0003t0010g0011 a0001c0003t0026g0003 a0001c0003t0066g0009 a0001c0003t0069g0007 a0001c0003t0097g0007 a0001c0003t0098g0003 a0001c0003t0099g0003 a0001c0003t0100g0003 a0001c0003t0101g0003 a0001c0003t0104g0003 a0001c0003t0117g0007	40	420	0.0952	40	c.29 others(51): Show c.2929_*2968dupTGGCAGCCGCCCCGTCTGAGAAGTGAGGAGCCCC TCCGCC	TRIM56	ENSG00000169871.13	transcript	ENST00000306085.11	protein_coding	3/3	2969	INFO_REALIGN_3_PRIME	chr7	TogoVar
TRIM66_chr11_8607040_8687665	8622365	C C	CACACACA others(33): Show CACACACACACACACACACACATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG02559.hp1 HG02559.hp1	a0013 a0013	a0013c0013 a0013c0013	a0013c0013t0047 a0013c0013t0047	a0013c0013t0047g0054 a0013c0013t0047g0054	1	390	0.0026	40	c.308 others(57): Show c.3080+450_3080+451insATATATATATATATATATATGTGTGTGT GTGTGTGTGTGT	TRIM66	ENSG00000166436.18	transcript	ENST00000646038.2	protein_coding	18/24			chr11	TogoVar
TRIM66_chr11_8607040_8687665	8622365	C C	CACACACA others(33): Show CACACACACACACACACACATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	NA18991.hp1 NA18991.hp1	a0009 a0009	a0009c0009 a0009c0009	a0009c0009t0001 a0009c0009t0001	a0009c0009t0001g0043 a0009c0009t0001g0043	1	390	0.0026	40	c.308 others(57): Show c.3080+450_3080+451insATATATATATATATATATATATGTGTGT GTGTGTGTGTGT	TRIM66	ENSG00000166436.18	transcript	ENST00000646038.2	protein_coding	18/24			chr11	TogoVar
TRIM66_chr11_8607040_8687665	8622365	C C	CACACACA others(33): Show CACACACACACACACACATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	NA19006.hp1 NA19006.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0087 a0001c0001t0001g0087	1	390	0.0026	40	c.308 others(57): Show c.3080+450_3080+451insATATATATATATATATATATATATGTGT GTGTGTGTGTGT	TRIM66	ENSG00000166436.18	transcript	ENST00000646038.2	protein_coding	18/24			chr11	TogoVar
TRIM66_chr11_8607040_8687665	8622365	C C	CACACACA others(33): Show CACACACACACACACATATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG02083.hp1 HG02257.hp2 NA19011.hp1 HG02083.hp1 HG02257.hp2 NA19011.hp1	a0001 a0004 a0001 a0004	a0001c0001 a0004c0004 a0001c0001 a0004c0004	a0001c0001t0001 a0004c0004t0004 a0001c0001t0001 a0004c0004t0004	a0001c0001t0001g0058 a0004c0004t0004g0309 a0004c0004t0004g0335 a0001c0001t0001g0058 a0004c0004t0004g0309 a0004c0004t0004g0335	3	390	0.0077	40	c.308 others(57): Show c.3080+450_3080+451insATATATATATATATATATATATATATGT GTGTGTGTGTGT	TRIM66	ENSG00000166436.18	transcript	ENST00000646038.2	protein_coding	18/24			chr11	TogoVar
TRIM66_chr11_8607040_8687665	8622365	C C	CACACACA others(33): Show CACACACACACACATATATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG01243.hp2 HG01256.hp1 HG01258.hp2 others(7): Show HG01243.hp2 HG01256.hp1 HG01258.hp2 HG01433.hp2 HG02809.hp2 HG03041.hp2 HG03688.hp2 NA18955.hp1 NA19054.hp2 NA19070.hp1	a0001 a0004 a0001 a0004	a0001c0001 a0004c0004 a0001c0001 a0004c0004	a0001c0001t0001 a0001c0001t0015 a0004c0004t0004 others(1): Show a0001c0001t0001 a0001c0001t0015 a0004c0004t0004 a0004c0004t0016	a0001c0001t0001g0109 a0001c0001t0001g0133 a0001c0001t0001g0201 others(7): Show a0001c0001t0001g0109 a0001c0001t0001g0133 a0001c0001t0001g0201 a0001c0001t0001g0203 a0001c0001t0015g0215 a0004c0004t0004g0330 a0004c0004t0004g0331 a0004c0004t0004g0338 a0004c0004t0016g0317 a0004c0004t0016g0322	10	390	0.0256	40	c.308 others(57): Show c.3080+450_3080+451insATATATATATATATATATATATATATAT GTGTGTGTGTGT	TRIM66	ENSG00000166436.18	transcript	ENST00000646038.2	protein_coding	18/24			chr11	TogoVar
TRIM66_chr11_8607040_8687665	8622365	C C	CACACACA others(33): Show CACACACACACATATATATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG03490.hp2 NA19064.hp1 HG03490.hp2 NA19064.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0019 a0001c0001t0001g0236 a0001c0001t0001g0019 a0001c0001t0001g0236	2	390	0.0051	40	c.308 others(57): Show c.3080+450_3080+451insATATATATATATATATATATATATATAT ATGTGTGTGTGT	TRIM66	ENSG00000166436.18	transcript	ENST00000646038.2	protein_coding	18/24			chr11	TogoVar
TRIM69_chr15_44731528_44772827	44768654	C C	CATATATA others(33): Show CATATATATATATATATATATATATATATATATATATATAT	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02056.hp2 HG02809.hp1 HG03139.hp2 HG02056.hp2 HG02809.hp1 HG03139.hp2	a0001 a0002 a0004 a0001 a0002 a0004	a0001c0001 a0002c0002 a0004c0004 a0001c0001 a0002c0002 a0004c0004	a0001c0001t0001 a0002c0002t0001 a0004c0004t0001 a0001c0001t0001 a0002c0002t0001 a0004c0004t0001	a0001c0001t0001g0170 a0002c0002t0001g0210 a0004c0004t0001g0032 a0001c0001t0001g0170 a0002c0002t0001g0210 a0004c0004t0001g0032	3	349	0.0086	40	c.88 others(49): Show c.882_*883insATATATATATATATATATATATATATATATATATAT ATAT	TRIM69	ENSG00000185880.13	transcript	ENST00000329464.9	protein_coding		828		chr15	TogoVar
TRIM6_chr11_5591637_5617952	5596543	T T	TCCCCCTT others(33): Show TCCCCCTTCCCCCTTCCCCTCCCCCCTTCCCCCTTCCCCTC	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01255.hp1 HG03710.hp2 HG01255.hp1 HG03710.hp2	a0001 a0001	a0001c0007 a0001c0007	a0001c0007t0001 a0001c0007t0001	a0001c0007t0001g0182 a0001c0007t0001g0200 a0001c0007t0001g0182 a0001c0007t0001g0200	2	480	0.0042	40	c.-35 others(49): Show c.-355_-354insCCCCCTTCCCCCTTCCCCTCCCCCCTTCCCCCTTCC CCTC	TRIM6	ENSG00000121236.21	transcript	ENST00000380097.8	protein_coding		93		chr11	TogoVar
TRIM8_chr10_102639479_102663318	102641152	G G	GTATATAT others(33): Show GTATATATGGTATATTATAGTATATAATATATGGTATAGTA	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02135.hp2 HG02135.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0005 a0001c0001t0001g0005	1	374	0.0027	40	c.-34 others(51): Show c.-3466_-3465insTATATATGGTATATTATAGTATATAATATATGGT ATAGTA	TRIM8	ENSG00000171206.16	transcript	ENST00000643721.2	protein_coding		3326		chr10	TogoVar
TRIOBP_chr22_37692048_37781556	37746044	C C	CCCCGCCG others(33): Show CCCCGCCGTCCCGCCGTCCCGCCGTCCCGCCGTCCCGCCGT	intron_variant intron_variant	MODIFIER	NA18993.hp1 NA18993.hp1	a0002 a0002	a0002c0001 a0002c0001	a0002c0001t0003 a0002c0001t0003	a0002c0001t0003g0205 a0002c0001t0003g0205	1	322	0.0031	40	c.532 others(59): Show c.5322+5035_5322+5036insTCCCGCCGTCCCGCCGTCCCGCCGTC CCGCCGTCCCGCCG	TRIOBP	ENSG00000100106.22	transcript	ENST00000644935.1	protein_coding	11/23		INFO_REALIGN_3_PRIME	chr22	TogoVar
TRIO_chr5_14138342_14515204	14511664	T T	TATATATA others(33): Show TATATATATATATTTATATATATATTTATATATTTATATAA	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02622.hp1 HG02622.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0007 a0001c0001t0007	a0001c0001t0007g0098 a0001c0001t0007g0098	1	198	0.0051	40	c.32 others(51): Show c.3242_*3243insATATATATATATTTATATATATATTTATATATTT ATATAA	TRIO	ENSG00000038382.23	transcript	ENST00000344204.9	protein_coding		1461		chr5	TogoVar
TRIP12_chr2_229758837_229927009	229917380	C C	CAAAAAAA others(33): Show CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	intron_variant intron_variant	MODIFIER	HG02602.hp2 HG02602.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0002 a0001c0002t0002	a0001c0002t0002g0309 a0001c0002t0002g0309	1	330	0.0030	40	c.-50 others(57): Show c.-50+4499_-50+4500insTTTTTTTTTTTTTTTTTTTTTTTTTTTT TTTTTTTTTTTT	TRIP12	ENSG00000153827.15	transcript	ENST00000675903.1	protein_coding	1/41			chr2	TogoVar
TRIP4_chr15_64382836_64460303	64431847	A A	ATATATAT others(33): Show ATATATATATATATATATATATATATATTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG02280.hp2 HG02280.hp2	a0001 a0001	a0001c0005 a0001c0005	a0001c0005t0001 a0001c0005t0001	a0001c0005t0001g0045 a0001c0005t0001g0045	1	220	0.0046	40	c.157 others(59): Show c.1575+6217_1575+6218insATATATATATATATATATATATATAT TTTTTTTTTTTTTT	TRIP4	ENSG00000103671.10	transcript	ENST00000261884.8	protein_coding	11/12		INFO_REALIGN_3_PRIME	chr15	TogoVar
TRPA1_chr8_72016250_72080584	72018205	G G	GTGTATAT others(33): Show GTGTATATATATATATATATATATATATATATATATATATA	downstream_gene_variant downstream_gene_variant	MODIFIER	HG03209.hp1 HG03209.hp2 HG03209.hp1 HG03209.hp2	a0001 a0004 a0001 a0004	a0001c0001 a0004c0003 a0001c0001 a0004c0003	a0001c0001t0005 a0004c0003t0005 a0001c0001t0005 a0004c0003t0005	a0001c0001t0005g0155 a0004c0003t0005g0215 a0001c0001t0005g0155 a0004c0003t0005g0215	2	402	0.0050	40	c.47 others(51): Show c.4700_*4701insTATATATATATATATATATATATATATATATATA TATACA	TRPA1	ENSG00000104321.11	transcript	ENST00000262209.5	protein_coding		3044		chr8	TogoVar
TRPA1_chr8_72016250_72080584	72018205	G G	GTGTGTAT others(33): Show GTGTGTATATATATATATATATATATATATATATATATATA	downstream_gene_variant downstream_gene_variant	MODIFIER	HG03688.hp1 HG03688.hp1	a0003 a0003	a0003c0008 a0003c0008	a0003c0008t0006 a0003c0008t0006	a0003c0008t0006g0282 a0003c0008t0006g0282	1	402	0.0025	40	c.47 others(51): Show c.4700_*4701insTATATATATATATATATATATATATATATATATA TACACA	TRPA1	ENSG00000104321.11	transcript	ENST00000262209.5	protein_coding		3044		chr8	TogoVar
TRPC4_chr13_37627063_37874772	37745538	G G	GTATATAT others(33): Show GTATATATATATATATACACGTATATATGTATATATACGTA	intron_variant intron_variant	MODIFIER	HG02135.hp2 NA18942.hp1 NA18981.hp1 others(1): Show HG02135.hp2 NA18942.hp1 NA18981.hp1 NA19078.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0002 a0001c0002t0003 others(1): Show a0001c0002t0001 a0001c0002t0002 a0001c0002t0003 a0001c0002t0007	a0001c0002t0001g0050 a0001c0002t0002g0258 a0001c0002t0003g0280 others(1): Show a0001c0002t0001g0050 a0001c0002t0002g0258 a0001c0002t0003g0280 a0001c0002t0007g0259	4	286	0.0140	40	c.897 others(55): Show c.897+398_897+399insTACGTATATATACATATATACGTGTATATA TATATATATA	TRPC4	ENSG00000133107.15	transcript	ENST00000379705.8	protein_coding	3/10			chr13	TogoVar
TRPC4_chr13_37627063_37874772	37752075	C C	CTATATAT others(33): Show CTATATATATATATATATATATATATATATATATATATATA	intron_variant intron_variant	MODIFIER	HG02257.hp1 HG02602.hp2 HG02622.hp2 others(9): Show HG02257.hp1 HG02602.hp2 HG02622.hp2 HG02738.hp1 HG04204.hp2 NA18957.hp2 NA18966.hp1 NA18969.hp1 NA18992.hp2 NA19002.hp2 NA19043.hp2 NA19240.hp1	a0001 a0001	a0001c0001 a0001c0003 a0001c0004 others(1): Show a0001c0001 a0001c0003 a0001c0004 a0001c0011	a0001c0001t0002 a0001c0001t0005 a0001c0001t0007 others(5): Show a0001c0001t0002 a0001c0001t0005 a0001c0001t0007 a0001c0001t0013 a0001c0001t0026 a0001c0003t0027 a0001c0004t0002 a0001c0011t0002	a0001c0001t0002g0022 a0001c0001t0002g0134 a0001c0001t0002g0220 others(9): Show a0001c0001t0002g0022 a0001c0001t0002g0134 a0001c0001t0002g0220 a0001c0001t0002g0222 a0001c0001t0002g0223 a0001c0001t0005g0244 a0001c0001t0007g0145 a0001c0001t0013g0080 a0001c0001t0026g0284 a0001c0003t0027g0269 a0001c0004t0002g0094 a0001c0011t0002g0087	12	286	0.0420	40	c.379 others(57): Show c.379-5621_379-5620insTATATATATATATATATATATATATATA TATATATATATA	TRPC4	ENSG00000133107.15	transcript	ENST00000379705.8	protein_coding	2/10			chr13	TogoVar
TRPC4_chr13_37627063_37874772	37752075	C C	CTATATAT others(33): Show CTATATATATGTATATATATATATATATATATATATATATA	intron_variant intron_variant	MODIFIER	HG00558.hp2 HG01123.hp1 HG01361.hp1 others(11): Show HG00558.hp2 HG01123.hp1 HG01361.hp1 HG01361.hp2 HG01515.hp1 HG02273.hp1 HG03669.hp2 NA18612.hp2 NA18960.hp1 NA18963.hp1 NA18980.hp2 NA19000.hp1 NA19007.hp2 NA19062.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0005 a0001c0001t0006 others(4): Show a0001c0001t0004 a0001c0001t0005 a0001c0001t0006 a0001c0001t0008 a0001c0001t0010 a0001c0001t0014 a0001c0001t0042	a0001c0001t0004g0123 a0001c0001t0004g0262 a0001c0001t0005g0078 others(11): Show a0001c0001t0004g0123 a0001c0001t0004g0262 a0001c0001t0005g0078 a0001c0001t0005g0162 a0001c0001t0006g0052 a0001c0001t0008g0058 a0001c0001t0008g0182 a0001c0001t0008g0229 a0001c0001t0010g0066 a0001c0001t0010g0108 a0001c0001t0010g0167 a0001c0001t0010g0193 a0001c0001t0014g0079 a0001c0001t0042g0031	14	286	0.0490	40	c.379 others(57): Show c.379-5621_379-5620insTATATATATATATATATATATATATATA TACATATATATA	TRPC4	ENSG00000133107.15	transcript	ENST00000379705.8	protein_coding	2/10			chr13	TogoVar

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Search Results (Total: 6641 hits)