Joint Open Genome and Omics Platform (JoGo)

Search by Variant

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Chr

Chromosome name (e.g., chr11).

Snpeff genename

Exact SnpEff gene name.

Sampleids

Target sampleid (e.g. HG02615).

Snpeff haplotype class

Haplotype-annotation class (e.g., ahapid, ahapid+chapid).

Snpeff annotation impact

Exact impact level (e.g., HIGH, MODERATE, LOW).

Snpeff annotation impact detail

Keyword match in SnpEff annotation.

Hapid

One or more haplotype IDs (comma-separated; e.g., a0001, a01, a0001c0001, a01c02, a1c2, a0001c0001t0005, a0001c0001t0005g0018).

Samplehapid

Sample haplotype IDs to include (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

No_hapid

Haplotype IDs to exclude (comma-separated; e.g., a0001, a0002, a0001c0001, a0001c0001t0005, a1, a01).

No_samplehapid

Sample haplotype IDs to exclude (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

Start

Start position (GRCh38).

End

End position (GRCh38).

Minac

Minimum alternate allele count (≥).

Maxac

Maximum alternate allele count (≤).

Minlen

Minimum variant length (≥).

Maxlen

Maximum variant length (≤).

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regionname	pos	ref	alt	annotation	impact	samples	ahapids	achapids	acthapids	actghapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	external
CNKSR3_chr6_154382515_154515685	154382579	C C	CAGGGGAG others(33): Show CAGGGGAGGGGAGGGGAGGGGAGGGGAGGGGAGGGGAGGGG	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02647.hp2 HG02647.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0130 a0001c0002t0130	a0001c0002t0130g0133 a0001c0002t0130g0133	1	342	0.0029	40	c.23 others(53): Show c.23774_*23775insCCCCTCCCCTCCCCTCCCCTCCCCTCCCCTCC CCTCCCCT	CNKSR3	ENSG00000153721.19	transcript	ENST00000607772.6	protein_coding		4935		chr6	TogoVar
CNKSR3_chr6_154382515_154515685	154415227	C C	CTTTTTTT others(33): Show CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	NA18944.hp1 NA18966.hp1 NA18944.hp1 NA18966.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0078 a0001c0001t0100 a0001c0001t0078 a0001c0001t0100	a0001c0001t0078g0108 a0001c0001t0100g0106 a0001c0001t0078g0108 a0001c0001t0100g0106	2	342	0.0059	40	c.946 others(55): Show c.946-805_946-804insAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAA	CNKSR3	ENSG00000153721.19	transcript	ENST00000607772.6	protein_coding	9/12			chr6	TogoVar
CNN2_chr19_1021608_1044065	1028969	G G	GTCAGGGG others(33): Show GTCAGGGGACCCTAACCCAAATAATCCCAGGCAGGTCCAGC	intron_variant intron_variant	MODIFIER	HG04115.hp2 HG04115.hp2	a0001 a0001	a0001c0013 a0001c0013	a0001c0013t0001 a0001c0013t0001	a0001c0013t0001g0054 a0001c0013t0001g0054	1	390	0.0026	40	c.64- others(55): Show c.64-2063_64-2062insCTCAGGGGACCCTAACCCAAATAATCCCAG GCAGGTCCAG	CNN2	ENSG00000064666.15	transcript	ENST00000263097.9	protein_coding	1/6		INFO_REALIGN_3_PRIME	chr19	TogoVar
CNN2_chr19_1021608_1044065	1029364	T T	TAGCTCAG others(33): Show TAGCTCAGGGGACCCTAACCCAAATCATCCCAGGCAGGTCC	intron_variant intron_variant	MODIFIER	HG01934.hp2 HG01934.hp2	a0001 a0001	a0001c0005 a0001c0005	a0001c0005t0008 a0001c0005t0008	a0001c0005t0008g0249 a0001c0005t0008g0249	1	390	0.0026	40	c.64- others(55): Show c.64-1637_64-1598dupCAGGCAGGTCCAGCTCAGGGGACCCTAACC CAAATCATCC	CNN2	ENSG00000064666.15	transcript	ENST00000263097.9	protein_coding	1/6		INFO_REALIGN_3_PRIME	chr19	TogoVar
CNOT10_chr3_32680188_32778875	32754489	A A	AAAAAAAA others(33): Show AAAAAAAATATATATATATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG02155.hp1 NA18960.hp1 HG02155.hp1 NA18960.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0096 a0001c0001t0001g0168 a0001c0001t0001g0096 a0001c0001t0001g0168	2	354	0.0057	40	c.159 others(59): Show c.1596-4968_1596-4967insAAAAAATATATATATATATATATATA TATATATATATATA	CNOT10	ENSG00000182973.20	transcript	ENST00000328834.10	protein_coding	13/18		INFO_REALIGN_3_PRIME	chr3	TogoVar
CNOT10_chr3_32680188_32778875	32754489	A A	AAAAAATA others(33): Show AAAAAATATATATATATATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG00323.hp2 NA18973.hp2 HG00323.hp2 NA18973.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0139 a0001c0001t0001g0158 a0001c0001t0001g0139 a0001c0001t0001g0158	2	354	0.0057	40	c.159 others(59): Show c.1596-4968_1596-4967insAAAATATATATATATATATATATATA TATATATATATATA	CNOT10	ENSG00000182973.20	transcript	ENST00000328834.10	protein_coding	13/18		INFO_REALIGN_3_PRIME	chr3	TogoVar
CNOT1_chr16_58514951_58634826	58516124	T T	TGGGGCGG others(33): Show TGGGGCGGGGCGGGGCGGGGCGGGGCGGGGCGGGGCGGGGC	downstream_gene_variant downstream_gene_variant	MODIFIER	NA18951.hp1 NA18951.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0145 a0001c0001t0001g0145	1	308	0.0033	40	c.48 others(51): Show c.4833_*4834insGCCCCGCCCCGCCCCGCCCCGCCCCGCCCCGCCC CGCCCC	CNOT1	ENSG00000125107.19	transcript	ENST00000317147.10	protein_coding		3826		chr16	TogoVar
CNOT2_chr12_70238433_70359993	70265273	T T	TTCTTCTC others(33): Show TTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTC	intron_variant intron_variant	MODIFIER	HG01257.hp2 HG01257.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0204 a0001c0001t0001g0204	1	280	0.0036	40	c.-95 others(59): Show c.-95-12844_-95-12805dupCTCTTCTCTTCTCTTCTCTTCTCTTC TCTTCTCTTCTCTT	CNOT2	ENSG00000111596.14	transcript	ENST00000229195.8	protein_coding	1/15		INFO_REALIGN_3_PRIME	chr12	TogoVar
CNOT3_chr19_54132762_54160681	54133831	C C	CCCTCTCT others(33): Show CCCTCTCTCCACCCTCCCTGTCTCCACCTCCCCTCCTCTGT	upstream_gene_variant upstream_gene_variant	MODIFIER	NA20129.hp2 NA20129.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0005 a0001c0002t0001g0005	1	223	0.0045	40	c.-42 others(51): Show c.-4213_-4212insCCTCTCTCCACCCTCCCTGTCTCCACCTCCCCTC CTCTGT	CNOT3	ENSG00000088038.20	transcript	ENST00000221232.11	protein_coding		3930		chr19	TogoVar
CNOT3_chr19_54132762_54160681	54133923	C C	CCCCTCTC others(33): Show CCCCTCTCTCTCTCCCTCCTCTCTCCACCTCCCCTCTCTCT	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00735.hp2 HG00735.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0140 a0001c0002t0001g0140	1	223	0.0045	40	c.-41 others(51): Show c.-4121_-4120insCCCTCTCTCTCTCCCTCCTCTCTCCACCTCCCCT CTCTCT	CNOT3	ENSG00000088038.20	transcript	ENST00000221232.11	protein_coding		3838		chr19	TogoVar
CNOT3_chr19_54132762_54160681	54134031	T T	TCCCCTCT others(33): Show TCCCCTCTCTCCCTCCCTCTCTCCACCTTCCCTCTCTCCTC	upstream_gene_variant upstream_gene_variant	MODIFIER	HG03688.hp2 HG03688.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0015 a0001c0001t0001g0015	1	223	0.0045	40	c.-40 others(51): Show c.-4013_-4012insCCCCTCTCTCCCTCCCTCTCTCCACCTTCCCTCT CTCCTC	CNOT3	ENSG00000088038.20	transcript	ENST00000221232.11	protein_coding		3730		chr19	TogoVar
CNOT3_chr19_54132762_54160681	54142433	T T	TACACACA others(33): Show TACACACACACACACACACACACACACACACACACACACAC	intron_variant intron_variant	MODIFIER	HG02683.hp2 HG02683.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0006 a0001c0001t0006	a0001c0001t0006g0055 a0001c0001t0006g0055	1	223	0.0045	40	c.-50 others(55): Show c.-50-478_-50-477insACACACACACACACACACACACACACACAC ACACACACAC	CNOT3	ENSG00000088038.20	transcript	ENST00000221232.11	protein_coding	1/17		INFO_REALIGN_3_PRIME	chr19	TogoVar
CNOT6L_chr4_77708387_77824368	77819049	G G	GACACACA others(33): Show GACACACACACACACACACACACACACACACACACACACAC	intron_variant intron_variant	MODIFIER	HG04184.hp1 HG04184.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0299 a0001c0001t0001g0299	1	328	0.0031	40	c.5+2 others(51): Show c.5+254_5+255insGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT GTGTGT	CNOT6L	ENSG00000138767.14	transcript	ENST00000504123.7	protein_coding	1/11			chr4	TogoVar
CNOT6_chr5_180489379_180583358	180531190	G G	GGGCGGCT others(33): Show GGGCGGCTGCCAGGCAGAGGGGCTCCTCACTTCCCAGACGT	intron_variant intron_variant	MODIFIER	HG01884.hp2 HG02717.hp2 HG02818.hp2 others(2): Show HG01884.hp2 HG02717.hp2 HG02818.hp2 HG06807.hp1 NA19240.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0013 a0001c0001t0001 a0001c0001t0013	a0001c0001t0001g0105 a0001c0001t0013g0103 a0001c0001t0013g0104 others(2): Show a0001c0001t0001g0105 a0001c0001t0013g0103 a0001c0001t0013g0104 a0001c0001t0013g0106 a0001c0001t0013g0107	5	334	0.0150	40	c.112 others(57): Show c.112+1841_112+1842insTGGCGGCTGCCAGGCAGAGGGGCTCCTC ACTTCCCAGACG	CNOT6	ENSG00000113300.13	transcript	ENST00000261951.9	protein_coding	2/11		INFO_REALIGN_3_PRIME	chr5	TogoVar
CNOT6_chr5_180489379_180583358	180533312	C C	CTATATAT others(33): Show CTATATATATATATATATATATATATATATATATATATATA	intron_variant intron_variant	MODIFIER	NA18967.hp1 NA18967.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0073 a0001c0001t0002g0073	1	334	0.0030	40	c.112 others(57): Show c.112+3955_112+3956insATATATATATATATATATATATATATAT ATATATATATAT	CNOT6	ENSG00000113300.13	transcript	ENST00000261951.9	protein_coding	2/11		INFO_REALIGN_3_PRIME	chr5	TogoVar
CNOT9_chr2_218563839_218602080	218575424	A A	AGCTCAGG others(33): Show AGCTCAGGCTGGAGTACAGTGGCTCAGGCTGGAGTACAGTG	intron_variant intron_variant	MODIFIER	HG00323.hp2 HG00639.hp2 HG00323.hp2 HG00639.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0005 a0001c0001t0002 a0001c0001t0005	a0001c0001t0002g0095 a0001c0001t0005g0058 a0001c0001t0002g0095 a0001c0001t0005g0058	2	322	0.0062	40	c.25- others(55): Show c.25-5135_25-5096dupCTCAGGCTGGAGTACAGTGGCTCAGGCTGG AGTACAGTGG	CNOT9	ENSG00000144580.15	transcript	ENST00000273064.11	protein_coding	1/7		INFO_REALIGN_3_PRIME	chr2	TogoVar
CNPY1_chr7_155496129_155551559	155527030	T T	TTTTCTTT others(33): Show TTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTC	intron_variant intron_variant	MODIFIER	HG00597.hp1 HG00597.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0158 a0001c0001t0002g0158	1	426	0.0024	40	c.100 others(59): Show c.100-17934_100-17933insGAAAGAAAGAAAGAAAGAAAGAAAGA AAGAAAGAAAGAAA	CNPY1	ENSG00000146910.14	transcript	ENST00000636446.2	protein_coding	2/4			chr7	TogoVar
CNST_chr1_246561456_246673595	246605789	G G	GGTGTCTT others(33): Show GGTGTCTTCCGGCCGGGGTAGGTGTCTTCCGGCCGGGGTGC	intron_variant intron_variant	MODIFIER	HG00280.hp2 HG00323.hp2 HG00408.hp1 others(100): Show HG00280.hp2 HG00323.hp2 HG00408.hp1 HG00408.hp2 HG00558.hp1 HG00621.hp1 HG00621.hp2 HG00639.hp1 HG00642.hp1 HG00673.hp1 HG00673.hp2 HG00741.hp1 HG01069.hp1 HG01070.hp2 HG01081.hp1 HG01081.hp2 HG01099.hp1 HG01109.hp1 HG01109.hp2 HG01175.hp1 HG01192.hp2 HG01257.hp1 HG01346.hp2 HG01884.hp1 HG01934.hp1 HG01943.hp2 HG01952.hp1 HG01993.hp1 HG02015.hp1 HG02015.hp2 HG02040.hp2 HG02056.hp1 HG02071.hp2 HG02083.hp2 HG02109.hp2 HG02135.hp1 HG02135.hp2 HG02145.hp1 HG02148.hp2 HG02257.hp1 HG02258.hp2 HG02273.hp2 HG02280.hp2 HG02300.hp1 HG02523.hp2 HG02559.hp2 HG02602.hp1 HG02698.hp1 HG02922.hp2 HG02965.hp1 HG02965.hp2 HG02970.hp1 HG02976.hp2 HG03017.hp2 HG03130.hp2 HG03471.hp1 HG03491.hp1 HG03491.hp2 HG03688.hp1 HG03704.hp1 HG03704.hp2 HG03834.hp1 HG03942.hp2 HG04115.hp2 HG04184.hp1 HG04184.hp2 HG04199.hp1 HG04204.hp1 HG06807.hp2 NA18612.hp1 NA18906.hp1 NA18942.hp2 NA18943.hp2 NA18944.hp2 NA18945.hp2 NA18946.hp1 NA18948.hp1 NA18951.hp2 NA18952.hp1 NA18952.hp2 NA18953.hp1 NA18953.hp2 NA18954.hp1 NA18960.hp1 NA18964.hp1 NA18966.hp2 NA18969.hp1 NA18971.hp1 NA18978.hp1 NA18979.hp1 NA18999.hp1 NA19005.hp2 NA19007.hp2 NA19009.hp2 NA19030.hp1 NA19070.hp2 NA19079.hp2 NA19085.hp1 NA19087.hp2 NA19089.hp1 NA19090.hp2 NA20300.hp2 NA20905.hp2	a0001 a0008 a0010 a0001 a0008 a0010	a0001c0001 a0001c0009 a0001c0012 others(2): Show a0001c0001 a0001c0009 a0001c0012 a0008c0007 a0010c0010	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(10): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 a0001c0001t0008 a0001c0001t0011 a0001c0001t0013 a0001c0001t0024 a0001c0001t0025 a0001c0009t0001 a0001c0012t0002 a0008c0007t0003 a0010c0010t0002	a0001c0001t0001g0022 a0001c0001t0001g0156 a0001c0001t0001g0160 others(100): Show a0001c0001t0001g0022 a0001c0001t0001g0156 a0001c0001t0001g0160 a0001c0001t0001g0194 a0001c0001t0001g0197 a0001c0001t0001g0198 a0001c0001t0001g0207 a0001c0001t0001g0215 a0001c0001t0001g0216 a0001c0001t0001g0217 a0001c0001t0001g0219 a0001c0001t0001g0228 a0001c0001t0001g0234 a0001c0001t0001g0236 a0001c0001t0001g0237 a0001c0001t0001g0240 a0001c0001t0001g0241 a0001c0001t0001g0242 a0001c0001t0001g0248 a0001c0001t0001g0249 a0001c0001t0001g0253 a0001c0001t0001g0254 a0001c0001t0001g0255 a0001c0001t0001g0257 a0001c0001t0001g0260 a0001c0001t0001g0263 a0001c0001t0001g0264 a0001c0001t0001g0265 a0001c0001t0001g0266 a0001c0001t0001g0271 a0001c0001t0001g0272 a0001c0001t0001g0273 a0001c0001t0001g0274 a0001c0001t0001g0277 a0001c0001t0001g0279 a0001c0001t0001g0280 a0001c0001t0001g0283 a0001c0001t0001g0287 a0001c0001t0001g0289 a0001c0001t0001g0291 a0001c0001t0001g0293 a0001c0001t0001g0295 a0001c0001t0001g0296 a0001c0001t0001g0298 a0001c0001t0001g0299 a0001c0001t0001g0300 a0001c0001t0001g0301 a0001c0001t0001g0303 a0001c0001t0001g0305 a0001c0001t0001g0306 a0001c0001t0001g0307 a0001c0001t0001g0308 a0001c0001t0001g0309 a0001c0001t0001g0314 a0001c0001t0001g0318 a0001c0001t0002g0005 a0001c0001t0002g0080 a0001c0001t0002g0129 a0001c0001t0002g0131 a0001c0001t0002g0195 a0001c0001t0002g0201 a0001c0001t0002g0214 a0001c0001t0002g0218 a0001c0001t0002g0223 a0001c0001t0002g0224 a0001c0001t0002g0231 a0001c0001t0002g0233 a0001c0001t0002g0238 a0001c0001t0002g0239 a0001c0001t0002g0243 a0001c0001t0002g0244 a0001c0001t0002g0245 a0001c0001t0002g0247 a0001c0001t0002g0252 a0001c0001t0002g0258 a0001c0001t0002g0262 a0001c0001t0002g0276 a0001c0001t0002g0281 a0001c0001t0002g0284 a0001c0001t0002g0285 a0001c0001t0002g0310 a0001c0001t0002g0315 a0001c0001t0003g0206 a0001c0001t0003g0220 a0001c0001t0003g0222 a0001c0001t0003g0259 a0001c0001t0003g0297 a0001c0001t0004g0157 a0001c0001t0004g0158 a0001c0001t0004g0159 a0001c0001t0004g0275 a0001c0001t0008g0020 a0001c0001t0008g0176 a0001c0001t0011g0208 a0001c0001t0011g0212 a0001c0001t0011g0221 a0001c0001t0013g0196 a0001c0001t0024g0269 a0001c0001t0025g0288 a0001c0009t0001g0191 a0001c0012t0002g0278 a0008c0007t0003g0267 a0010c0010t0002g0028	103	320	0.3219	40	c.379 others(59): Show c.379+13866_379+13867insAGGTGTCTTCCGGCCGGGGTGCGTGT CTTCCGGCCGGGGT	CNST	ENSG00000162852.14	transcript	ENST00000366513.9	protein_coding	2/10		INFO_REALIGN_3_PRIME	chr1	TogoVar
CNST_chr1_246561456_246673595	246605789	G G	GGTGTCTT others(33): Show GGTGTCTTCCGGCCGGGGTGCGTGTCTTCCGGCCGGGGTGC	intron_variant intron_variant	MODIFIER	HG01243.hp2 HG02109.hp1 HG02280.hp1 others(6): Show HG01243.hp2 HG02109.hp1 HG02280.hp1 HG02630.hp1 HG02717.hp2 HG02897.hp1 HG03540.hp2 NA19030.hp2 NA20129.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0004 a0001c0001t0016 a0001c0001t0001 a0001c0001t0004 a0001c0001t0016	a0001c0001t0001g0135 a0001c0001t0004g0016 a0001c0001t0004g0042 others(6): Show a0001c0001t0001g0135 a0001c0001t0004g0016 a0001c0001t0004g0042 a0001c0001t0004g0100 a0001c0001t0004g0134 a0001c0001t0004g0150 a0001c0001t0004g0153 a0001c0001t0004g0154 a0001c0001t0016g0136	9	320	0.0281	40	c.379 others(59): Show c.379+13877_379+13878insGGCCGGGGTGCGTGTCTTCCGGCCGG GGTGCGTGTCTTCC	CNST	ENSG00000162852.14	transcript	ENST00000366513.9	protein_coding	2/10		INFO_REALIGN_3_PRIME	chr1	TogoVar
CNTN1_chr12_40687439_41077415	40813058	T T	TCTTTCTT others(33): Show TCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTC	intron_variant intron_variant	MODIFIER	HG03834.hp2 HG03834.hp2	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0005 a0001c0003t0005	a0001c0003t0005g0104 a0001c0003t0005g0104	1	230	0.0044	40	c.-76 others(59): Show c.-76-95296_-76-95295insTCTTTCTTTCTTTCTTTCTTTCTTTC TTTCTTTCTTCCTT	CNTN1	ENSG00000018236.15	transcript	ENST00000551295.7	protein_coding	1/23		INFO_REALIGN_3_PRIME	chr12	TogoVar
CNTN1_chr12_40687439_41077415	40924881	C C	CATATATA others(33): Show CATATATATATATATATATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	NA18984.hp2 NA18984.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0131 a0001c0001t0002g0131	1	230	0.0044	40	c.496 others(55): Show c.496+246_496+247insTATATATATATATATATATATATATATATA TATATATATA	CNTN1	ENSG00000018236.15	transcript	ENST00000551295.7	protein_coding	6/23		INFO_REALIGN_3_PRIME	chr12	TogoVar
CNTN3_chr3_74257568_74619659	74366780	G G	GTGTGTAT others(33): Show GTGTGTATATATATATATATATATATATATATATATATATA	intron_variant intron_variant	MODIFIER	HG04199.hp1 HG04199.hp1	a0002 a0002	a0002c0005 a0002c0005	a0002c0005t0003 a0002c0005t0003	a0002c0005t0003g0059 a0002c0005t0003g0059	1	174	0.0058	40	c.947 others(57): Show c.947-1079_947-1078insTATATATATATATATATATATATATATA TATATATACACA	CNTN3	ENSG00000113805.9	transcript	ENST00000263665.7	protein_coding	8/22			chr3	TogoVar
CNTN4_chr3_2093866_3062959	2400404	A A	AATATATA others(33): Show AATATATATATATATATATATATATATATATACATATATAT	intron_variant intron_variant	MODIFIER	HG03041.hp1 HG03041.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0033 a0001c0001t0001g0033	1	116	0.0086	40	c.-89 others(59): Show c.-89+61194_-89+61195insTATATATACATATATATATATATATA TATATATATATATA	CNTN4	ENSG00000144619.15	transcript	ENST00000418658.6	protein_coding	3/24		INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN4_chr3_2093866_3062959	2400420	T T	TATATATA others(33): Show TATATATATATACATATATATATATATATATATATATATAC	intron_variant intron_variant	MODIFIER	HG00738.hp2 HG00738.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0005 a0001c0001t0005	a0001c0001t0005g0054 a0001c0001t0005g0054	1	116	0.0086	40	c.-89 others(59): Show c.-89+61194_-89+61195insTATACATATATATATATATATATATA TATATACATATATA	CNTN4	ENSG00000144619.15	transcript	ENST00000418658.6	protein_coding	3/24		INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN4_chr3_2093866_3062959	2481033	T T	TTTTCTTT others(33): Show TTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTC	intron_variant intron_variant	MODIFIER	HG02572.hp1 HG02572.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0110 a0001c0002t0001g0110	1	116	0.0086	40	c.-88 others(59): Show c.-88-90354_-88-90353insTTCTTTCTTTCTTTCTTTCTTTCTTT CTTTCTTTCTTTCT	CNTN4	ENSG00000144619.15	transcript	ENST00000418658.6	protein_coding	3/24		INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN4_chr3_2093866_3062959	2481055	T T	TTCTTTCT others(33): Show TTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTC	intron_variant intron_variant	MODIFIER	HG01175.hp2 HG01257.hp1 HG03041.hp2 HG01175.hp2 HG01257.hp1 HG03041.hp2	a0001 a0001	a0001c0003 a0001c0004 a0001c0005 a0001c0003 a0001c0004 a0001c0005	a0001c0003t0006 a0001c0004t0001 a0001c0005t0010 a0001c0003t0006 a0001c0004t0001 a0001c0005t0010	a0001c0003t0006g0040 a0001c0004t0001g0106 a0001c0005t0010g0001 a0001c0003t0006g0040 a0001c0004t0001g0106 a0001c0005t0010g0001	3	116	0.0259	40	c.-88 others(59): Show c.-88-90354_-88-90353insTTCTTTCTTTCTTTCTTTCTTTCTTT CTTTCTCTCTTTCT	CNTN4	ENSG00000144619.15	transcript	ENST00000418658.6	protein_coding	3/24		INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN4_chr3_2093866_3062959	2687248	T T	TGCCTTCT others(33): Show TGCCTTCTATAGGCAGGGCACATGCTCTTTGGTTCCCTGAA	intron_variant intron_variant	MODIFIER	HG00140.hp1 HG00438.hp1 HG00438.hp2 others(90): Show HG00140.hp1 HG00438.hp1 HG00438.hp2 HG00639.hp1 HG00639.hp2 HG00642.hp1 HG00642.hp2 HG00735.hp1 HG00735.hp2 HG00738.hp1 HG00738.hp2 HG01169.hp1 HG01175.hp1 HG01175.hp2 HG01243.hp1 HG01243.hp2 HG01257.hp2 HG01258.hp1 HG01261.hp1 HG01261.hp2 HG01884.hp1 HG01884.hp2 HG01891.hp1 HG01891.hp2 HG01978.hp1 HG01978.hp2 HG02074.hp1 HG02074.hp2 HG02165.hp1 HG02165.hp2 HG02257.hp2 HG02258.hp1 HG02258.hp2 HG02451.hp1 HG02451.hp2 HG02486.hp2 HG02523.hp1 HG02523.hp2 HG02559.hp1 HG02572.hp1 HG02572.hp2 HG02602.hp1 HG02602.hp2 HG02615.hp1 HG02615.hp2 HG02622.hp1 HG02622.hp2 HG02647.hp1 HG02647.hp2 HG02683.hp1 HG02683.hp2 HG02717.hp2 HG02738.hp1 HG02738.hp2 HG02809.hp2 HG02818.hp1 HG02886.hp2 HG02897.hp2 HG02965.hp1 HG02965.hp2 HG03041.hp1 HG03041.hp2 HG03130.hp1 HG03130.hp2 HG03139.hp1 HG03139.hp2 HG03209.hp1 HG03209.hp2 HG03239.hp1 HG03239.hp2 HG03453.hp1 HG03471.hp1 HG03471.hp2 HG03486.hp1 HG03486.hp2 HG03516.hp1 HG03516.hp2 HG03540.hp2 HG03654.hp2 HG03831.hp1 HG03831.hp2 HG03927.hp1 HG03927.hp2 HG04184.hp1 HG04184.hp2 HG06807.hp1 HG06807.hp2 NA18906.hp1 NA18906.hp2 NA18990.hp1 NA19043.hp2 NA20300.hp1 NA20300.hp2	a0001 a0002 a0003 others(5): Show a0001 a0002 a0003 a0004 a0005 a0006 a0007 a0009	a0001c0001 a0001c0002 a0001c0003 others(22): Show a0001c0001 a0001c0002 a0001c0003 a0001c0004 a0001c0005 a0001c0006 a0001c0007 a0001c0009 a0001c0010 a0001c0020 a0001c0021 a0001c0023 a0001c0024 a0001c0025 a0002c0014 a0002c0015 a0002c0016 a0002c0017 a0003c0008 a0003c0019 a0004c0011 a0005c0012 a0006c0028 a0007c0018 a0009c0027	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(48): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 a0001c0001t0005 a0001c0001t0008 a0001c0001t0009 a0001c0002t0001 a0001c0002t0002 a0001c0002t0003 a0001c0002t0005 a0001c0002t0006 a0001c0002t0007 a0001c0002t0012 a0001c0003t0001 a0001c0003t0002 a0001c0003t0003 a0001c0003t0006 a0001c0003t0011 a0001c0004t0001 a0001c0004t0002 a0001c0004t0006 a0001c0005t0001 a0001c0005t0006 a0001c0005t0010 a0001c0006t0002 a0001c0006t0003 a0001c0006t0004 a0001c0007t0003 a0001c0007t0004 a0001c0007t0016 a0001c0009t0004 a0001c0009t0014 a0001c0010t0003 a0001c0020t0002 a0001c0021t0002 a0001c0023t0004 a0001c0024t0015 a0001c0025t0001 a0002c0014t0001 a0002c0015t0003 a0002c0016t0003 a0002c0017t0008 a0003c0008t0001 a0003c0008t0013 a0003c0019t0002 a0004c0011t0003 a0005c0012t0009 a0006c0028t0001 a0007c0018t0003 a0009c0027t0001	a0001c0001t0001g0033 a0001c0001t0001g0050 a0001c0001t0001g0059 others(90): Show a0001c0001t0001g0033 a0001c0001t0001g0050 a0001c0001t0001g0059 a0001c0001t0001g0099 a0001c0001t0002g0030 a0001c0001t0002g0074 a0001c0001t0002g0086 a0001c0001t0003g0006 a0001c0001t0003g0101 a0001c0001t0004g0042 a0001c0001t0004g0081 a0001c0001t0005g0054 a0001c0001t0005g0098 a0001c0001t0005g0115 a0001c0001t0008g0043 a0001c0001t0008g0053 a0001c0001t0008g0089 a0001c0001t0009g0052 a0001c0002t0001g0021 a0001c0002t0001g0027 a0001c0002t0001g0029 a0001c0002t0001g0038 a0001c0002t0001g0088 a0001c0002t0001g0108 a0001c0002t0001g0110 a0001c0002t0002g0035 a0001c0002t0002g0063 a0001c0002t0002g0078 a0001c0002t0002g0102 a0001c0002t0003g0114 a0001c0002t0005g0003 a0001c0002t0006g0071 a0001c0002t0007g0080 a0001c0002t0007g0087 a0001c0002t0007g0112 a0001c0002t0012g0013 a0001c0003t0001g0014 a0001c0003t0001g0037 a0001c0003t0001g0045 a0001c0003t0001g0094 a0001c0003t0001g0116 a0001c0003t0002g0061 a0001c0003t0002g0072 a0001c0003t0002g0073 a0001c0003t0002g0107 a0001c0003t0003g0046 a0001c0003t0003g0070 a0001c0003t0006g0040 a0001c0003t0011g0113 a0001c0004t0001g0020 a0001c0004t0001g0036 a0001c0004t0001g0097 a0001c0004t0002g0022 a0001c0004t0002g0048 a0001c0004t0002g0064 a0001c0004t0002g0076 a0001c0004t0006g0044 a0001c0004t0006g0068 a0001c0005t0001g0090 a0001c0005t0001g0092 a0001c0005t0001g0096 a0001c0005t0001g0104 a0001c0005t0006g0010 a0001c0005t0006g0032 a0001c0005t0010g0001 a0001c0005t0010g0085 a0001c0006t0002g0026 a0001c0006t0003g0069 a0001c0006t0004g0004 a0001c0007t0003g0034 a0001c0007t0004g0066 a0001c0007t0016g0105 a0001c0009t0004g0005 a0001c0009t0014g0039 a0001c0010t0003g0011 a0001c0010t0003g0077 a0001c0020t0002g0082 a0001c0021t0002g0025 a0001c0023t0004g0041 a0001c0024t0015g0057 a0001c0025t0001g0100 a0002c0014t0001g0016 a0002c0015t0003g0103 a0002c0016t0003g0079 a0002c0017t0008g0067 a0003c0008t0001g0084 a0003c0008t0013g0109 a0003c0019t0002g0031 a0004c0011t0003g0111 a0005c0012t0009g0093 a0006c0028t0001g0023 a0007c0018t0003g0062 a0009c0027t0001g0007	93	116	0.8017	40	c.56- others(57): Show c.56-48965_56-48926dupCCTTCTATAGGCAGGGCACATGCTCTTT GGTTCCCTGAAG	CNTN4	ENSG00000144619.15	transcript	ENST00000418658.6	protein_coding	4/24		INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN5_chr11_99015949_100363885	99941571	A A	AACACACA others(33): Show AACACACACACACACACACACACACACACACACACACACAC	intron_variant intron_variant	MODIFIER	NA19000.hp1 NA19000.hp1	a0006 a0006	a0006c0006 a0006c0006	a0006c0006t0014 a0006c0006t0014	a0006c0006t0014g0058 a0006c0006t0014g0058	1	66	0.0152	40	c.674 others(59): Show c.674-15220_674-15219insCACACACACACACACACACACACACA CACACACACACACA	CNTN5	ENSG00000149972.12	transcript	ENST00000524871.6	protein_coding	7/24		INFO_REALIGN_3_PRIME	chr11	TogoVar
CNTN5_chr11_99015949_100363885	100090505	C C	CCCTCCCT others(33): Show CCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTT	intron_variant intron_variant	MODIFIER	HG00738.hp1 HG01081.hp2 HG01099.hp1 others(8): Show HG00738.hp1 HG01081.hp2 HG01099.hp1 HG01099.hp2 HG02132.hp2 HG02723.hp2 HG02976.hp2 HG03130.hp1 NA19000.hp1 NA19043.hp2 NA20300.hp2	a0001 a0002 a0004 others(3): Show a0001 a0002 a0004 a0005 a0006 a0012	a0001c0001 a0002c0002 a0004c0004 others(3): Show a0001c0001 a0002c0002 a0004c0004 a0005c0005 a0006c0006 a0012c0013	a0001c0001t0004 a0001c0001t0010 a0002c0002t0003 others(5): Show a0001c0001t0004 a0001c0001t0010 a0002c0002t0003 a0002c0002t0008 a0004c0004t0002 a0005c0005t0001 a0006c0006t0014 a0012c0013t0008	a0001c0001t0004g0010 a0001c0001t0004g0044 a0001c0001t0010g0047 others(8): Show a0001c0001t0004g0010 a0001c0001t0004g0044 a0001c0001t0010g0047 a0002c0002t0003g0036 a0002c0002t0003g0037 a0002c0002t0008g0019 a0004c0004t0002g0051 a0005c0005t0001g0017 a0005c0005t0001g0035 a0006c0006t0014g0058 a0012c0013t0008g0031	11	66	0.1667	40	c.158 others(61): Show c.1580+16234_1580+16235insCCCTCCCTCCCTCCCTTCCTCCCT CCCTCCCTCCCTCCCT	CNTN5	ENSG00000149972.12	transcript	ENST00000524871.6	protein_coding	13/24		INFO_REALIGN_3_PRIME	chr11	TogoVar
CNTN5_chr11_99015949_100363885	100090525	C C	CCCTCCCT others(33): Show CCCTCCCTTCCTCCCTCCCTCCCTCCCTCCCTTCCTTCCTT	intron_variant intron_variant	MODIFIER	NA18522.hp1 NA18522.hp1	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0004 a0002c0002t0004	a0002c0002t0004g0007 a0002c0002t0004g0007	1	66	0.0152	40	c.158 others(61): Show c.1580+16234_1580+16235insCCCTTCCTCCCTCCCTCCCTCCCT CCCTTCCTTCCTTCCT	CNTN5	ENSG00000149972.12	transcript	ENST00000524871.6	protein_coding	13/24		INFO_REALIGN_3_PRIME	chr11	TogoVar
CNTN6_chr3_1088024_1409217	1158824	A A	ATATATAT others(33): Show ATATATATACACACACATATATATGTGTGTGTATATATATG	intron_variant intron_variant	MODIFIER	HG00642.hp1 HG00642.hp2 HG00733.hp1 others(47): Show HG00642.hp1 HG00642.hp2 HG00733.hp1 HG01070.hp1 HG01071.hp2 HG01074.hp2 HG01106.hp2 HG01109.hp1 HG01123.hp1 HG01123.hp2 HG01169.hp1 HG01258.hp2 HG01261.hp1 HG01515.hp1 HG01517.hp2 HG01943.hp1 HG01952.hp1 HG01978.hp2 HG01993.hp2 HG02015.hp1 HG02027.hp1 HG02027.hp2 HG02074.hp1 HG02132.hp1 HG02132.hp2 HG02155.hp2 HG02258.hp2 HG02451.hp1 HG02486.hp1 HG02723.hp2 HG03139.hp2 HG03209.hp2 HG03225.hp2 HG03239.hp2 HG03471.hp1 HG03471.hp2 HG03654.hp2 HG03669.hp1 HG03710.hp1 HG03834.hp1 HG03927.hp1 HG03927.hp2 HG06807.hp2 NA18747.hp2 NA18950.hp1 NA18950.hp2 NA18971.hp1 NA19009.hp1 NA20752.hp1 NA20905.hp2	a0001 a0005 a0001 a0005	a0001c0001 a0001c0002 a0001c0003 others(7): Show a0001c0001 a0001c0002 a0001c0003 a0001c0004 a0001c0005 a0001c0007 a0001c0008 a0001c0009 a0001c0012 a0005c0026	a0001c0001t0001 a0001c0002t0001 a0001c0002t0003 others(15): Show a0001c0001t0001 a0001c0002t0001 a0001c0002t0003 a0001c0002t0007 a0001c0002t0008 a0001c0003t0001 a0001c0004t0001 a0001c0004t0002 a0001c0005t0001 a0001c0005t0002 a0001c0005t0004 a0001c0007t0001 a0001c0007t0002 a0001c0007t0006 a0001c0008t0001 a0001c0009t0001 a0001c0012t0001 a0005c0026t0001	a0001c0001t0001g0088 a0001c0001t0001g0093 a0001c0001t0001g0149 others(47): Show a0001c0001t0001g0088 a0001c0001t0001g0093 a0001c0001t0001g0149 a0001c0001t0001g0173 a0001c0002t0001g0018 a0001c0002t0001g0045 a0001c0002t0001g0084 a0001c0002t0001g0094 a0001c0002t0001g0099 a0001c0002t0001g0108 a0001c0002t0001g0109 a0001c0002t0001g0117 a0001c0002t0001g0136 a0001c0002t0001g0174 a0001c0002t0001g0176 a0001c0002t0003g0069 a0001c0002t0003g0079 a0001c0002t0007g0059 a0001c0002t0008g0221 a0001c0003t0001g0040 a0001c0003t0001g0064 a0001c0003t0001g0101 a0001c0003t0001g0165 a0001c0004t0001g0041 a0001c0004t0001g0061 a0001c0004t0001g0072 a0001c0004t0001g0158 a0001c0004t0002g0038 a0001c0004t0002g0039 a0001c0005t0001g0004 a0001c0005t0001g0016 a0001c0005t0001g0078 a0001c0005t0001g0106 a0001c0005t0001g0157 a0001c0005t0001g0159 a0001c0005t0001g0181 a0001c0005t0001g0189 a0001c0005t0001g0193 a0001c0005t0001g0203 a0001c0005t0002g0019 a0001c0005t0004g0194 a0001c0007t0001g0102 a0001c0007t0002g0032 a0001c0007t0006g0170 a0001c0008t0001g0010 a0001c0008t0001g0043 a0001c0008t0001g0087 a0001c0009t0001g0114 a0001c0012t0001g0104 a0005c0026t0001g0091	50	232	0.2155	40	c.55+ others(57): Show c.55+10784_55+10785insGTGTGTGTATATATATGTATATATACAC ACACATATATAT	CNTN6	ENSG00000134115.13	transcript	ENST00000446702.7	protein_coding	2/22		INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN6_chr3_1088024_1409217	1384412	A A	AAAGGCAG others(33): Show AAAGGCAGTTAAGTAATGAAAAAAAATACCTAGATTGTCTT	intron_variant intron_variant	MODIFIER	HG02109.hp2 HG02145.hp2 HG02257.hp1 others(11): Show HG02109.hp2 HG02145.hp2 HG02257.hp1 HG02280.hp1 HG02451.hp1 HG02572.hp1 HG02572.hp2 HG02647.hp2 HG02723.hp1 HG02809.hp2 HG02970.hp2 HG03209.hp1 HG03516.hp1 HG06807.hp2	a0001 a0001	a0001c0005 a0001c0006 a0001c0023 a0001c0005 a0001c0006 a0001c0023	a0001c0005t0001 a0001c0005t0004 a0001c0006t0001 others(2): Show a0001c0005t0001 a0001c0005t0004 a0001c0006t0001 a0001c0006t0004 a0001c0023t0001	a0001c0005t0001g0005 a0001c0005t0001g0164 a0001c0005t0001g0180 others(11): Show a0001c0005t0001g0005 a0001c0005t0001g0164 a0001c0005t0001g0180 a0001c0005t0001g0193 a0001c0005t0001g0207 a0001c0005t0001g0215 a0001c0005t0004g0194 a0001c0006t0001g0037 a0001c0006t0001g0162 a0001c0006t0001g0185 a0001c0006t0001g0195 a0001c0006t0001g0216 a0001c0006t0004g0119 a0001c0023t0001g0186	14	232	0.0603	40	c.251 others(59): Show c.2517+1005_2517+1044dupAAGGCAGTTAAGTAATGAAAAAAAAT ACCTAGATTGTCTT	CNTN6	ENSG00000134115.13	transcript	ENST00000446702.7	protein_coding	19/22		INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTN6_chr3_1088024_1409217	1384772	C C	CATATATA others(33): Show CATATATATATATATATATATATATACATATATATACACAT	intron_variant intron_variant	MODIFIER	HG02074.hp1 HG02074.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0084 a0001c0002t0001g0084	1	232	0.0043	40	c.251 others(57): Show c.2518-812_2518-811insTATATATACACATATATATATATATATA TATATATATACA	CNTN6	ENSG00000134115.13	transcript	ENST00000446702.7	protein_coding	19/22		INFO_REALIGN_3_PRIME	chr3	TogoVar
CNTNAP2_chr7_146111801_148425998	146451851	T T	TGTATATA others(33): Show TGTATATATACATACGTGTATATATATATACGTATATATAC	intron_variant intron_variant	MODIFIER	HG00735.hp2 HG01891.hp2 HG02486.hp1 others(13): Show HG00735.hp2 HG01891.hp2 HG02486.hp1 HG02486.hp2 HG02717.hp1 HG02717.hp2 HG02886.hp1 HG02976.hp2 HG03098.hp1 HG03098.hp2 HG03225.hp2 HG03540.hp1 NA18522.hp1 NA18522.hp2 NA19030.hp2 NA21309.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0001c0002 a0001c0003 others(7): Show a0001c0001 a0001c0002 a0001c0003 a0001c0005 a0001c0010 a0001c0013 a0001c0018 a0001c0019 a0002c0016 a0002c0017	a0001c0001t0001 a0001c0001t0006 a0001c0001t0007 others(12): Show a0001c0001t0001 a0001c0001t0006 a0001c0001t0007 a0001c0002t0001 a0001c0002t0010 a0001c0003t0011 a0001c0003t0013 a0001c0003t0020 a0001c0005t0008 a0001c0010t0002 a0001c0013t0003 a0001c0018t0002 a0001c0019t0006 a0002c0016t0004 a0002c0017t0015	a0001c0001t0001g0003 a0001c0001t0006g0009 a0001c0001t0007g0018 others(13): Show a0001c0001t0001g0003 a0001c0001t0006g0009 a0001c0001t0007g0018 a0001c0001t0007g0020 a0001c0002t0001g0021 a0001c0002t0010g0002 a0001c0003t0011g0023 a0001c0003t0013g0010 a0001c0003t0020g0017 a0001c0005t0008g0005 a0001c0010t0002g0014 a0001c0013t0003g0039 a0001c0018t0002g0012 a0001c0019t0006g0015 a0002c0016t0004g0024 a0002c0017t0015g0037	16	40	0.4000	40	c.98- others(59): Show c.98-322420_98-322419insGTATATATACATACGTGTATATATAT ATACGTATATATAC	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	1/23			chr7	TogoVar
CNTNAP2_chr7_146111801_148425998	146502227	A A	ATATATGT others(33): Show ATATATGTGTGTGTATATATATATATATGAATATATATGTG	intron_variant intron_variant	MODIFIER	NA20129.hp2 NA20129.hp2	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0023 a0001c0003t0023	a0001c0003t0023g0030 a0001c0003t0023g0030	1	40	0.0250	40	c.98- others(59): Show c.98-272039_98-272038insGTGTGTGTATATATATATATATGAAT ATATATGTGTATAT	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	1/23		INFO_REALIGN_3_PRIME	chr7	TogoVar
CNTNAP2_chr7_146111801_148425998	147802025	G G	GGCTGCCG others(33): Show GGCTGCCGGGCGGAGGGGCTCCTCACTTCTCAGACGGGGCA	intron_variant intron_variant	MODIFIER	HG02451.hp1 HG03139.hp2 HG02451.hp1 HG03139.hp2	a0001 a0001	a0001c0002 a0001c0011 a0001c0002 a0001c0011	a0001c0002t0001 a0001c0011t0016 a0001c0002t0001 a0001c0011t0016	a0001c0002t0001g0007 a0001c0011t0016g0019 a0001c0002t0001g0007 a0001c0011t0016g0019	2	40	0.0500	40	c.209 others(63): Show c.2099-101538_2099-101499dupCTGCCGGGCGGAGGGGCTCCTC ACTTCTCAGACGGGGCAG	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	13/23		INFO_REALIGN_3_PRIME	chr7	TogoVar
CNTNAP2_chr7_146111801_148425998	147802233	A A	ACGCTCCT others(33): Show ACGCTCCTCACTTCCCAGATGGGATGGCGGCCGGGAAGAAG	intron_variant intron_variant	MODIFIER	HG02486.hp1 HG02630.hp2 HG02886.hp2 others(2): Show HG02486.hp1 HG02630.hp2 HG02886.hp2 HG02976.hp1 HG03225.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0005 others(2): Show a0001c0001 a0001c0002 a0001c0005 a0001c0015 a0001c0018	a0001c0001t0007 a0001c0002t0002 a0001c0005t0022 others(2): Show a0001c0001t0007 a0001c0002t0002 a0001c0005t0022 a0001c0015t0001 a0001c0018t0002	a0001c0001t0007g0020 a0001c0002t0002g0013 a0001c0005t0022g0032 others(2): Show a0001c0001t0007g0020 a0001c0002t0002g0013 a0001c0005t0022g0032 a0001c0015t0001g0011 a0001c0018t0002g0012	5	40	0.1250	40	c.209 others(63): Show c.2099-101298_2099-101297insAAGAAGCGCTCCTCACTTCCCA GATGGGATGGCGGCCGGG	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	13/23		INFO_REALIGN_3_PRIME	chr7	TogoVar
CNTNAP2_chr7_146111801_148425998	147802233	A A	ATGCTCCT others(33): Show ATGCTCCTCACTTCCCAGATGGGATGGCGGCCGGGAAGAAG	intron_variant intron_variant	MODIFIER	HG02896.hp2 HG02897.hp2 NA18522.hp2 HG02896.hp2 HG02897.hp2 NA18522.hp2	a0001 a0001	a0001c0001 a0001c0004 a0001c0001 a0001c0004	a0001c0001t0007 a0001c0004t0003 a0001c0001t0007 a0001c0004t0003	a0001c0001t0007g0018 a0001c0004t0003g0035 a0001c0004t0003g0036 a0001c0001t0007g0018 a0001c0004t0003g0035 a0001c0004t0003g0036	3	40	0.0750	40	c.209 others(63): Show c.2099-101332_2099-101331insTGCTCCTCACTTCCCAGATGGG ATGGCGGCCGGGAAGAAG	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	13/23			chr7	TogoVar
CNTNAP2_chr7_146111801_148425998	148297187	A A	AGGAAGGA others(33): Show AGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAG	intron_variant intron_variant	MODIFIER	NA19030.hp1 NA19030.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0038 a0001c0001t0001g0038	1	40	0.0250	40	c.347 others(61): Show c.3475+30081_3475+30082insGGAAGGAAGGAAGGAAGGAGGGAA GGAAGGAAGGAAGGAA	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	21/23		INFO_REALIGN_3_PRIME	chr7	TogoVar
CNTNAP2_chr7_146111801_148425998	148301306	A A	AAAATATA others(33): Show AAAATATATATATATATATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG02486.hp2 HG02486.hp2	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0011 a0001c0003t0011	a0001c0003t0011g0023 a0001c0003t0011g0023	1	40	0.0250	40	c.347 others(61): Show c.3475+34181_3475+34182insAATATATATATATATATATATATA TATATATATATATATA	CNTNAP2	ENSG00000174469.23	transcript	ENST00000361727.8	protein_coding	21/23		INFO_REALIGN_3_PRIME	chr7	TogoVar
CNTNAP3B_chr9_41885536_42134426	41934112	T T	TATATATA others(33): Show TATATATATATATATATATATATATATATATATACACACAC	intron_variant intron_variant	MODIFIER	HG00140.hp2 HG00323.hp1 HG01255.hp2 others(3): Show HG00140.hp2 HG00323.hp1 HG01255.hp2 HG02083.hp2 HG02572.hp1 HG03942.hp1	a0002 a0012 a0002 a0012	a0002c0002 a0002c0020 a0012c0022 a0002c0002 a0002c0020 a0012c0022	a0002c0002t0001 a0002c0002t0012 a0002c0002t0022 others(2): Show a0002c0002t0001 a0002c0002t0012 a0002c0002t0022 a0002c0020t0001 a0012c0022t0001	a0002c0002t0001g0050 a0002c0002t0001g0059 a0002c0002t0012g0051 others(3): Show a0002c0002t0001g0050 a0002c0002t0001g0059 a0002c0002t0012g0051 a0002c0002t0022g0068 a0002c0020t0001g0060 a0012c0022t0001g0055	6	108	0.0556	40	c.223 others(59): Show c.2237+4131_2237+4132insGTGTGTGTATATATATATATATATAT ATATATATATATAT	CNTNAP3B	ENSG00000154529.15	transcript	ENST00000377561.7	protein_coding	14/23			chr9	TogoVar
CNTNAP3B_chr9_41885536_42134426	42090783	C C	CATATGTG others(33): Show CATATGTGTGTGTGTATATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG01255.hp1 HG02040.hp1 HG02273.hp2 others(3): Show HG01255.hp1 HG02040.hp1 HG02273.hp2 HG02717.hp1 HG03490.hp2 NA18947.hp2	a0001 a0006 a0029 a0001 a0006 a0029	a0001c0001 a0001c0042 a0006c0007 others(1): Show a0001c0001 a0001c0042 a0006c0007 a0029c0045	a0001c0001t0003 a0001c0042t0013 a0006c0007t0002 others(1): Show a0001c0001t0003 a0001c0042t0013 a0006c0007t0002 a0029c0045t0002	a0001c0001t0003g0095 a0001c0001t0003g0101 a0001c0001t0003g0102 others(3): Show a0001c0001t0003g0095 a0001c0001t0003g0101 a0001c0001t0003g0102 a0001c0042t0013g0001 a0006c0007t0002g0014 a0029c0045t0002g0019	6	108	0.0556	40	c.197 others(59): Show c.197-13722_197-13721insATATATATATATATATATATATATAT ACACACACACATAT	CNTNAP3B	ENSG00000154529.15	transcript	ENST00000377561.7	protein_coding	2/23			chr9	TogoVar
CNTNAP3B_chr9_41885536_42134426	42090783	C C	CATATGTG others(33): Show CATATGTGTGTGTGTGTGTATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG02486.hp1 HG02486.hp1	a0032 a0032	a0032c0039 a0032c0039	a0032c0039t0014 a0032c0039t0014	a0032c0039t0014g0025 a0032c0039t0014g0025	1	108	0.0093	40	c.197 others(59): Show c.197-13722_197-13721insATATATATATATATATATATATACAC ACACACACACATAT	CNTNAP3B	ENSG00000154529.15	transcript	ENST00000377561.7	protein_coding	2/23			chr9	TogoVar
CNTNAP4_chr16_76272401_76565757	76460773	A A	AAAAAAAA others(33): Show AAAAAAAAAAAAAAAAAAAATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	NA18943.hp2 NA18943.hp2	a0006 a0006	a0006c0009 a0006c0009	a0006c0009t0001 a0006c0009t0001	a0006c0009t0001g0023 a0006c0009t0001g0023	1	274	0.0037	40	c.133 others(59): Show c.1334-1182_1334-1181insAAAAAAAAAAAAAAAAAATATATATA TATATATATATATA	CNTNAP4	ENSG00000152910.19	transcript	ENST00000611870.5	protein_coding	8/23		INFO_REALIGN_3_PRIME	chr16	TogoVar
CNTNAP4_chr16_76272401_76565757	76460773	A A	AAAAAAAA others(33): Show AAAAAAAAAAAAAAAATATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG02145.hp2 HG02145.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0004	a0001c0001t0004g0051 a0001c0001t0004g0051	1	274	0.0037	40	c.133 others(59): Show c.1334-1182_1334-1181insAAAAAAAAAAAAAATATATATATATA TATATATATATATA	CNTNAP4	ENSG00000152910.19	transcript	ENST00000611870.5	protein_coding	8/23		INFO_REALIGN_3_PRIME	chr16	TogoVar
CNTNAP4_chr16_76272401_76565757	76460773	A A	AAAAAAAA others(33): Show AAAAAAAAAAAAAATATATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	NA19007.hp2 NA19007.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0017 a0001c0001t0001g0017	1	274	0.0037	40	c.133 others(59): Show c.1334-1182_1334-1181insAAAAAAAAAAAATATATATATATATA TATATATATATATA	CNTNAP4	ENSG00000152910.19	transcript	ENST00000611870.5	protein_coding	8/23		INFO_REALIGN_3_PRIME	chr16	TogoVar
CNTNAP4_chr16_76272401_76565757	76470482	A A	AATATATA others(33): Show AATATATATATATATATATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG03098.hp1 NA18994.hp2 HG03098.hp1 NA18994.hp2	a0002 a0003 a0002 a0003	a0002c0005 a0003c0003 a0002c0005 a0003c0003	a0002c0005t0004 a0003c0003t0007 a0002c0005t0004 a0003c0003t0007	a0002c0005t0004g0132 a0003c0003t0007g0260 a0002c0005t0004g0132 a0003c0003t0007g0260	2	274	0.0073	40	c.165 others(59): Show c.1655+2974_1655+2975insTATATATATATATATATATATATATA TATATATATATATA	CNTNAP4	ENSG00000152910.19	transcript	ENST00000611870.5	protein_coding	10/23		INFO_REALIGN_3_PRIME	chr16	TogoVar
CNTNAP4_chr16_76272401_76565757	76470495	A A	ATATATAT others(33): Show ATATATATATATATATATATATATATATATATATATATATT	intron_variant intron_variant	MODIFIER	HG00673.hp1 HG00673.hp1	a0008 a0008	a0008c0017 a0008c0017	a0008c0017t0002 a0008c0017t0002	a0008c0017t0002g0214 a0008c0017t0002g0214	1	274	0.0037	40	c.165 others(59): Show c.1655+2974_1655+2975insTATATATATATATATATATATATATA TATATATATATTTA	CNTNAP4	ENSG00000152910.19	transcript	ENST00000611870.5	protein_coding	10/23		INFO_REALIGN_3_PRIME	chr16	TogoVar
CNTNAP4_chr16_76272401_76565757	76522687	C C	CTTTCTTT others(33): Show CTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCT	intron_variant intron_variant	MODIFIER	HG02886.hp1 HG02886.hp1	a0003 a0003	a0003c0006 a0003c0006	a0003c0006t0001 a0003c0006t0001	a0003c0006t0001g0067 a0003c0006t0001g0067	1	274	0.0037	40	c.275 others(57): Show c.2755+483_2755+522dupTCTTTTCTTTTCTTTTCTTTTCTTTTCT TTTCTTTTCTTT	CNTNAP4	ENSG00000152910.19	transcript	ENST00000611870.5	protein_coding	17/23		INFO_REALIGN_3_PRIME	chr16	TogoVar
CNTNAP5_chr2_124020287_124926219	124571527	C C	CTTTTTCT others(33): Show CTTTTTCTTTTTCTCTTTGTTTTCTTTTTTCTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG02897.hp1 NA19043.hp2 HG02897.hp1 NA19043.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0002c0004 a0001c0001 a0002c0004	a0001c0001t0007 a0002c0004t0001 a0001c0001t0007 a0002c0004t0001	a0001c0001t0007g0039 a0002c0004t0001g0001 a0001c0001t0007g0039 a0002c0004t0001g0001	2	64	0.0313	40	c.175 others(59): Show c.1756+8209_1756+8210insCTTTTTCTCTTTGTTTTCTTTTTTCT TTTTTTTTTTTTTT	CNTNAP5	ENSG00000155052.15	transcript	ENST00000682447.1	protein_coding	11/23		INFO_REALIGN_3_PRIME	chr2	TogoVar

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