Joint Open Genome and Omics Platform (JoGo)

Search by Variant

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Chr

Chromosome name (e.g., chr11).

Snpeff genename

Exact SnpEff gene name.

Sampleids

Target sampleid (e.g. HG02615).

Snpeff haplotype class

Haplotype-annotation class (e.g., ahapid, ahapid+chapid).

Snpeff annotation impact

Exact impact level (e.g., HIGH, MODERATE, LOW).

Snpeff annotation impact detail

Keyword match in SnpEff annotation.

Hapid

One or more haplotype IDs (comma-separated; e.g., a0001, a01, a0001c0001, a01c02, a1c2, a0001c0001t0005, a0001c0001t0005g0018).

Samplehapid

Sample haplotype IDs to include (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

No_hapid

Haplotype IDs to exclude (comma-separated; e.g., a0001, a0002, a0001c0001, a0001c0001t0005, a1, a01).

No_samplehapid

Sample haplotype IDs to exclude (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

Start

Start position (GRCh38).

End

End position (GRCh38).

Minac

Minimum alternate allele count (≥).

Maxac

Maximum alternate allele count (≤).

Minlen

Minimum variant length (≥).

Maxlen

Maximum variant length (≤).

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regionname	pos	ref	alt	annotation	impact	samples	ahapids	achapids	acthapids	actghapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	external
GPHN_chr14_66503147_67186803	66629173	A A	ATATTTAT others(33): Show ATATTTATATACATATATAAATATGTATATAAATATATATT	intron_variant intron_variant	MODIFIER	HG01123.hp2 HG01361.hp1 HG01123.hp2 HG01361.hp1	a0002 a0002	a0002c0003 a0002c0003	a0002c0003t0001 a0002c0003t0001	a0002c0003t0001g0229 a0002c0003t0001g0230 a0002c0003t0001g0229 a0002c0003t0001g0230	2	234	0.0086	40	c.65- others(57): Show c.65-51931_65-51930insTTATATACATATATAAATATGTATATAA ATATATATTTAT	GPHN	ENSG00000171723.16	transcript	ENST00000478722.6	protein_coding	1/22		INFO_REALIGN_3_PRIME	chr14	TogoVar
GPHN_chr14_66503147_67186803	66629173	A A	ATATTTAT others(33): Show ATATTTATATACGTATATAAATATGTATATAAATATATATT	intron_variant intron_variant	MODIFIER	HG03453.hp2 HG03453.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0234 a0001c0001t0001g0234	1	234	0.0043	40	c.65- others(57): Show c.65-51931_65-51930insTTATATACGTATATAAATATGTATATAA ATATATATTTAT	GPHN	ENSG00000171723.16	transcript	ENST00000478722.6	protein_coding	1/22		INFO_REALIGN_3_PRIME	chr14	TogoVar
GPHN_chr14_66503147_67186803	66961909	T T	TATATATA others(33): Show TATATATATATATATATATATATATATATATATATATATAC	intron_variant intron_variant	MODIFIER	HG03654.hp2 HG03654.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0115 a0001c0001t0001g0115	1	234	0.0043	40	c.829 others(57): Show c.829-3280_829-3241dupTATATATATATATATATATATATATATA TATATATATACA	GPHN	ENSG00000171723.16	transcript	ENST00000478722.6	protein_coding	8/22		INFO_REALIGN_3_PRIME	chr14	TogoVar
GPHN_chr14_66503147_67186803	67144286	T T	TATATATA others(33): Show TATATATATATATACACATATATATATATATATATATATAC	intron_variant intron_variant	MODIFIER	NA18984.hp1 NA18984.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0003 a0001c0001t0001g0003	1	234	0.0043	40	c.183 others(57): Show c.1836+838_1836+839insTATATATATATACACATATATATATATA TATATATATACA	GPHN	ENSG00000171723.16	transcript	ENST00000478722.6	protein_coding	18/22		INFO_REALIGN_3_PRIME	chr14	TogoVar
GPHN_chr14_66503147_67186803	67144286	T T	TATATATA others(33): Show TATATATATATATATACACATATATATATATATATATATAC	intron_variant intron_variant	MODIFIER	NA18998.hp1 NA18998.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0189 a0001c0001t0001g0189	1	234	0.0043	40	c.183 others(57): Show c.1836+838_1836+839insTATATATATATATACACATATATATATA TATATATATACA	GPHN	ENSG00000171723.16	transcript	ENST00000478722.6	protein_coding	18/22		INFO_REALIGN_3_PRIME	chr14	TogoVar
GPHN_chr14_66503147_67186803	67144286	T T	TATATATA others(33): Show TATATATATATATATACATATATATATATATATATATATAC	intron_variant intron_variant	MODIFIER	HG01358.hp1 HG03491.hp1 NA19065.hp2 HG01358.hp1 HG03491.hp1 NA19065.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0106 a0001c0001t0001g0108 a0001c0001t0001g0178 a0001c0001t0001g0106 a0001c0001t0001g0108 a0001c0001t0001g0178	3	234	0.0128	40	c.183 others(57): Show c.1836+838_1836+839insTATATATATATATACATATATATATATA TATATATATACA	GPHN	ENSG00000171723.16	transcript	ENST00000478722.6	protein_coding	18/22		INFO_REALIGN_3_PRIME	chr14	TogoVar
GPHN_chr14_66503147_67186803	67144286	T T	TATATATA others(33): Show TATATATATATATATATACATATATATATATATATATATAC	intron_variant intron_variant	MODIFIER	HG00673.hp1 HG03834.hp2 HG00673.hp1 HG03834.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0167 a0001c0001t0001g0168 a0001c0001t0001g0167 a0001c0001t0001g0168	2	234	0.0086	40	c.183 others(57): Show c.1836+838_1836+839insTATATATATATATATACATATATATATA TATATATATACA	GPHN	ENSG00000171723.16	transcript	ENST00000478722.6	protein_coding	18/22		INFO_REALIGN_3_PRIME	chr14	TogoVar
GPR119_chrX_130374449_130390674	130377333	T T	TATATATA others(33): Show TATATATATATACGTATATATATATATACATATATATATAC	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02896.hp2 HG02897.hp1 NA18522.hp1 HG02896.hp2 HG02897.hp1 NA18522.hp1	a0001 a0001	a0001c0001 a0001c0004 a0001c0001 a0001c0004	a0001c0001t0006 a0001c0004t0006 a0001c0001t0006 a0001c0004t0006	a0001c0001t0006g0034 a0001c0004t0006g0009 a0001c0001t0006g0034 a0001c0004t0006g0009	3	302	0.0099	40	c.52 others(51): Show c.5222_*5223insGTATATATATATGTATATATATATATACGTATAT ATATAT	GPR119	ENSG00000147262.5	transcript	ENST00000682440.1	protein_coding		2115		chrX	TogoVar
GPR139_chr16_20023239_20078890	20039701	A A	AAACCAAA others(33): Show AAACCAAACTGTTAAATGTATAAACTCAGGGGAGTTTATAC	intron_variant intron_variant	MODIFIER	NA18968.hp2 NA18968.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0046 a0001c0001t0046	a0001c0001t0046g0019 a0001c0001t0046g0019	1	364	0.0028	40	c.128 others(57): Show c.128-7072_128-7033dupGTATAAACTCCCCTGAGTTTATACATTT AACAGTTTGGTT	GPR139	ENSG00000180269.8	transcript	ENST00000570682.2	protein_coding	1/1			chr16	TogoVar
GPR139_chr16_20023239_20078890	20041142	A A	AGAGGGGA others(33): Show AGAGGGGAGGGGAGGGGAGGGGAGGGGAGGGGAGGGGAGGG	intron_variant intron_variant	MODIFIER	NA19088.hp2 NA19088.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0007 a0001c0001t0007	a0001c0001t0007g0318 a0001c0001t0007g0318	1	364	0.0028	40	c.128 others(57): Show c.128-8474_128-8473insCCCTCCCCTCCCCTCCCCTCCCCTCCCC TCCCCTCCCCTC	GPR139	ENSG00000180269.8	transcript	ENST00000570682.2	protein_coding	1/1			chr16	TogoVar
GPR139_chr16_20023239_20078890	20041147	A A	AGAGGGGA others(33): Show AGAGGGGAGGGGAGGGGAGGGGAGGGGAGGGGAGGGGAGGG	intron_variant intron_variant	MODIFIER	NA18947.hp2 NA19082.hp2 NA18947.hp2 NA19082.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0007 a0001c0001t0016 a0001c0001t0007 a0001c0001t0016	a0001c0001t0007g0323 a0001c0001t0016g0287 a0001c0001t0007g0323 a0001c0001t0016g0287	2	364	0.0055	40	c.128 others(57): Show c.128-8479_128-8478insCCCTCCCCTCCCCTCCCCTCCCCTCCCC TCCCCTCCCCTC	GPR139	ENSG00000180269.8	transcript	ENST00000570682.2	protein_coding	1/1			chr16	TogoVar
GPR139_chr16_20023239_20078890	20041152	A A	AGAGGAGA others(33): Show AGAGGAGAGGGGAGGGGAGGGGAGGGGAGGGGAGGGGAGGG	intron_variant intron_variant	MODIFIER	NA18968.hp1 NA18968.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0007 a0001c0001t0007	a0001c0001t0007g0192 a0001c0001t0007g0192	1	364	0.0028	40	c.128 others(57): Show c.128-8484_128-8483insCCCTCCCCTCCCCTCCCCTCCCCTCCCC TCCCCTCTCCTC	GPR139	ENSG00000180269.8	transcript	ENST00000570682.2	protein_coding	1/1			chr16	TogoVar
GPR139_chr16_20023239_20078890	20041152	A A	AGAGGGGA others(33): Show AGAGGGGAGGGGAGGGGAGGGGAGGGGAGGGGAGGGGAGGG	intron_variant intron_variant	MODIFIER	HG02165.hp1 HG03831.hp1 HG02165.hp1 HG03831.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0007 a0001c0002t0015 a0001c0001t0007 a0001c0002t0015	a0001c0001t0007g0194 a0001c0002t0015g0321 a0001c0001t0007g0194 a0001c0002t0015g0321	2	364	0.0055	40	c.128 others(57): Show c.128-8523_128-8484dupCCCTCCCCTCCCCTCCCCTCCCCTCCCC TCCCCTCCCCTC	GPR139	ENSG00000180269.8	transcript	ENST00000570682.2	protein_coding	1/1			chr16	TogoVar
GPR139_chr16_20023239_20078890	20041252	G G	GGAGGGGA others(33): Show GGAGGGGAGGGGAGGGGAGGGGAGGGGAGGGGAGGGGAGGA	intron_variant intron_variant	MODIFIER	HG00597.hp2 NA18952.hp2 NA18973.hp2 HG00597.hp2 NA18952.hp2 NA18973.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0007 a0001c0001t0010 a0001c0001t0016 a0001c0001t0007 a0001c0001t0010 a0001c0001t0016	a0001c0001t0007g0314 a0001c0001t0010g0349 a0001c0001t0016g0286 a0001c0001t0007g0314 a0001c0001t0010g0349 a0001c0001t0016g0286	3	364	0.0082	40	c.128 others(57): Show c.128-8584_128-8583insTCCTCCCCTCCCCTCCCCTCCCCTCCCC TCCCCTCCCCTC	GPR139	ENSG00000180269.8	transcript	ENST00000570682.2	protein_coding	1/1			chr16	TogoVar
GPR158_chr10_25170001_25607229	25241372	C C	CTCTCTTC others(33): Show CTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCT	intron_variant intron_variant	MODIFIER	HG02922.hp2 HG02922.hp2	a0014 a0014	a0014c0017 a0014c0017	a0014c0017t0001 a0014c0017t0001	a0014c0017t0001g0067 a0014c0017t0001g0067	1	162	0.0062	40	c.100 others(61): Show c.1008+20217_1008+20256dupCTCTTCTCTTCTCTTCTCTTCTCT TCTCTTCTCTTCTCTT	GPR158	ENSG00000151025.11	transcript	ENST00000376351.4	protein_coding	2/10		INFO_REALIGN_3_PRIME	chr10	TogoVar
GPR26_chr10_123661355_123702399	123675798	C C	CTGTGTGT others(33): Show CTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTACGTG	intron_variant intron_variant	MODIFIER	NA18991.hp2 NA18991.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0002 a0001c0002t0002	a0001c0002t0002g0145 a0001c0002t0002g0145	1	412	0.0024	40	c.782 others(55): Show c.782+886_782+887insGTGTGTGTGTGTGTGTACGTGTGTGTGTGT GTGTGTGTGT	GPR26	ENSG00000154478.4	transcript	ENST00000284674.2	protein_coding	2/2		INFO_REALIGN_3_PRIME	chr10	TogoVar
GPR26_chr10_123661355_123702399	123675833	C C	CGTGTGTG others(33): Show CGTGTGTGTGTGTACGTGTGTGTGTGTGTGTGTGTGTGTGT	intron_variant intron_variant	MODIFIER	HG02622.hp1 HG03098.hp1 HG02622.hp1 HG03098.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0009 a0001c0001t0011 a0001c0001t0009 a0001c0001t0011	a0001c0001t0009g0226 a0001c0001t0011g0227 a0001c0001t0009g0226 a0001c0001t0011g0227	2	412	0.0049	40	c.782 others(55): Show c.782+914_782+915insACGTGTGTGTGTGTGTGTGTGTGTGTGTGT GTGTGTGTGT	GPR26	ENSG00000154478.4	transcript	ENST00000284674.2	protein_coding	2/2		INFO_REALIGN_3_PRIME	chr10	TogoVar
GPR42_chr19_35366068_35377962	35368447	G G	GATACAGC others(33): Show GATACAGCAAAAGCAGTTTTAAGAGGAAATTTTATATCACT	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01952.hp1 HG01952.hp1	a0001 a0001	a0001c0005 a0001c0005	a0001c0005t0002 a0001c0005t0002	a0001c0005t0002g0001 a0001c0005t0002g0001	1	399	0.0025	40	c.-26 others(51): Show c.-2683_-2682insATACAGCAAAAGCAGTTTTAAGAGGAAATTTTAT ATCACT	GPR42	ENSG00000126251.7	transcript	ENST00000454971.3	protein_coding		2620		chr19	TogoVar
GPRC5A_chr12_12886562_12922937	12914549	C C	CTTCTTTC others(33): Show CTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCT	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG00621.hp2 HG00621.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0191 a0001c0001t0191	a0001c0001t0191g0134 a0001c0001t0191g0134	1	396	0.0025	40	c.20 others(51): Show c.2019_*2058dupTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTT CTTTCT	GPRC5A	ENSG00000013588.10	transcript	ENST00000014914.6	protein_coding	4/4	2059	INFO_REALIGN_3_PRIME	chr12	TogoVar
GRAMD1B_chr11_123425269_123632767	123457117	A A	AAAAGAAA others(33): Show AAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	intron_variant intron_variant	MODIFIER	HG00558.hp2 HG00621.hp1 HG01106.hp1 others(9): Show HG00558.hp2 HG00621.hp1 HG01106.hp1 HG01167.hp2 HG01169.hp1 HG01433.hp1 HG03041.hp1 HG03490.hp1 NA18952.hp1 NA18954.hp1 NA18979.hp2 NA19010.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(6): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0007 a0001c0001t0011 a0001c0001t0019 a0001c0001t0030 a0001c0001t0032 a0001c0002t0026	a0001c0001t0001g0086 a0001c0001t0001g0202 a0001c0001t0002g0067 others(9): Show a0001c0001t0001g0086 a0001c0001t0001g0202 a0001c0001t0002g0067 a0001c0001t0002g0177 a0001c0001t0003g0150 a0001c0001t0007g0019 a0001c0001t0011g0258 a0001c0001t0011g0259 a0001c0001t0019g0184 a0001c0001t0030g0236 a0001c0001t0032g0015 a0001c0002t0026g0026	12	282	0.0426	40	c.375 others(59): Show c.375-23677_375-23676insAGAAAGAAAGAAAGAAAGAAAGAAAG AAAGAAAGAAAGAA	GRAMD1B	ENSG00000023171.20	transcript	ENST00000635736.2	protein_coding	1/19		INFO_REALIGN_3_PRIME	chr11	TogoVar
GRAMD1B_chr11_123425269_123632767	123457136	A A	AGAAAGAA others(33): Show AGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAT	intron_variant intron_variant	MODIFIER	HG01106.hp2 HG04228.hp2 HG01106.hp2 HG04228.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0018 a0001c0001t0001 a0001c0001t0018	a0001c0001t0001g0163 a0001c0001t0018g0018 a0001c0001t0001g0163 a0001c0001t0018g0018	2	282	0.0071	40	c.375 others(59): Show c.375-23677_375-23676insAGAAAGAAAGAAAGAAAGAAAGAAAG AAAGAAAGAATGAA	GRAMD1B	ENSG00000023171.20	transcript	ENST00000635736.2	protein_coding	1/19		INFO_REALIGN_3_PRIME	chr11	TogoVar
GRAMD1B_chr11_123425269_123632767	123513605	C C	CCTTTCTT others(33): Show CCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTT	intron_variant intron_variant	MODIFIER	HG01433.hp1 HG01433.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0032 a0001c0001t0032	a0001c0001t0032g0015 a0001c0001t0032g0015	1	282	0.0036	40	c.452 others(59): Show c.452+32715_452+32716insTCTTTCTTTCTTTCTTTCTTTCTTTC TTTCTTTCTTTCTT	GRAMD1B	ENSG00000023171.20	transcript	ENST00000635736.2	protein_coding	2/19		INFO_REALIGN_3_PRIME	chr11	TogoVar
GRAMD1B_chr11_123425269_123632767	123513613	C C	CCTTTCTT others(33): Show CCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTT	intron_variant intron_variant	MODIFIER	HG00544.hp2 HG00544.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0004	a0001c0001t0004g0172 a0001c0001t0004g0172	1	282	0.0036	40	c.452 others(59): Show c.452+32723_452+32724insTCTTTCTTTCTTTCTTTCTTTCTTTC TTTCTTTCTTTCTT	GRAMD1B	ENSG00000023171.20	transcript	ENST00000635736.2	protein_coding	2/19		INFO_REALIGN_3_PRIME	chr11	TogoVar
GRAMD1B_chr11_123425269_123632767	123513617	C C	CCTTCCTT others(33): Show CCTTCCTTCCTTCCTTCCTTTCTTTCTTTCTTTCTTTCTTT	intron_variant intron_variant	MODIFIER	HG02559.hp2 HG02559.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0029 a0001c0001t0029	a0001c0001t0029g0274 a0001c0001t0029g0274	1	282	0.0036	40	c.452 others(59): Show c.452+32727_452+32728insCCTTCCTTCCTTCCTTTCTTTCTTTC TTTCTTTCTTTCTT	GRAMD1B	ENSG00000023171.20	transcript	ENST00000635736.2	protein_coding	2/19		INFO_REALIGN_3_PRIME	chr11	TogoVar
GRAMD1B_chr11_123425269_123632767	123513617	C C	CCTTCCTT others(33): Show CCTTCCTTCCTTCCTTTCTTTCTTTCTTTCTTTCTTTCTTT	intron_variant intron_variant	MODIFIER	HG01361.hp2 HG01361.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0028 a0001c0002t0028	a0001c0002t0028g0132 a0001c0002t0028g0132	1	282	0.0036	40	c.452 others(59): Show c.452+32727_452+32728insCCTTCCTTCCTTTCTTTCTTTCTTTC TTTCTTTCTTTCTT	GRAMD1B	ENSG00000023171.20	transcript	ENST00000635736.2	protein_coding	2/19		INFO_REALIGN_3_PRIME	chr11	TogoVar
GRAMD1B_chr11_123425269_123632767	123513617	C C	CCTTCCTT others(33): Show CCTTCCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTT	intron_variant intron_variant	MODIFIER	HG04228.hp2 HG04228.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0018 a0001c0001t0018	a0001c0001t0018g0018 a0001c0001t0018g0018	1	282	0.0036	40	c.452 others(59): Show c.452+32727_452+32728insCCTTTCTTTCTTTCTTTCTTTCTTTC TTTCTTTCTTTCTT	GRAMD1B	ENSG00000023171.20	transcript	ENST00000635736.2	protein_coding	2/19		INFO_REALIGN_3_PRIME	chr11	TogoVar
GRAMD1B_chr11_123425269_123632767	123524318	T T	TTTTTATT others(33): Show TTTTTATTTTATTTTATTTTATTTTATTTTATTTTATTTTA	intron_variant intron_variant	MODIFIER	HG00099.hp2 HG00323.hp2 HG00408.hp1 others(35): Show HG00099.hp2 HG00323.hp2 HG00408.hp1 HG00408.hp2 HG00438.hp1 HG00609.hp1 HG00621.hp2 HG00642.hp1 HG00738.hp1 HG01070.hp2 HG01074.hp1 HG01515.hp1 HG01952.hp1 HG02004.hp1 HG02040.hp2 HG02071.hp1 HG02071.hp2 HG02083.hp1 HG02135.hp1 HG02300.hp1 NA18747.hp2 NA18950.hp1 NA18950.hp2 NA18954.hp1 NA18962.hp2 NA18967.hp1 NA18969.hp1 NA18977.hp1 NA18977.hp2 NA18979.hp1 NA18979.hp2 NA18983.hp2 NA18986.hp1 NA19002.hp2 NA19010.hp2 NA19065.hp1 NA19087.hp1 NA19090.hp1	a0001 a0005 a0007 others(1): Show a0001 a0005 a0007 a0008	a0001c0001 a0001c0002 a0005c0012 others(2): Show a0001c0001 a0001c0002 a0005c0012 a0007c0014 a0008c0017	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(17): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 a0001c0001t0012 a0001c0001t0013 a0001c0001t0019 a0001c0001t0032 a0001c0001t0038 a0001c0001t0080 a0001c0001t0084 a0001c0001t0087 a0001c0002t0005 a0001c0002t0010 a0001c0002t0023 a0001c0002t0050 a0001c0002t0057 a0005c0012t0035 a0007c0014t0005 a0008c0017t0001	a0001c0001t0001g0035 a0001c0001t0001g0061 a0001c0001t0001g0081 others(35): Show a0001c0001t0001g0035 a0001c0001t0001g0061 a0001c0001t0001g0081 a0001c0001t0001g0086 a0001c0001t0001g0091 a0001c0001t0001g0092 a0001c0001t0001g0124 a0001c0001t0001g0160 a0001c0001t0001g0197 a0001c0001t0001g0202 a0001c0001t0001g0248 a0001c0001t0001g0254 a0001c0001t0002g0067 a0001c0001t0002g0154 a0001c0001t0002g0272 a0001c0001t0003g0212 a0001c0001t0004g0211 a0001c0001t0012g0269 a0001c0001t0013g0183 a0001c0001t0019g0117 a0001c0001t0019g0130 a0001c0001t0019g0141 a0001c0001t0032g0097 a0001c0001t0038g0204 a0001c0001t0080g0121 a0001c0001t0084g0255 a0001c0001t0087g0088 a0001c0002t0005g0049 a0001c0002t0005g0099 a0001c0002t0005g0103 a0001c0002t0010g0048 a0001c0002t0010g0110 a0001c0002t0023g0068 a0001c0002t0050g0058 a0001c0002t0057g0120 a0005c0012t0035g0146 a0007c0014t0005g0235 a0008c0017t0001g0216	38	282	0.1348	40	c.452 others(59): Show c.452+43459_452+43460insATTTTATTTTATTTTATTTTATTTTA TTTTATTTTATTTT	GRAMD1B	ENSG00000023171.20	transcript	ENST00000635736.2	protein_coding	2/19		INFO_REALIGN_3_PRIME	chr11	TogoVar
GRAMD1B_chr11_123425269_123632767	123548325	T T	TATATATA others(33): Show TATATATATATATATACACACACACACACACACACACACAC	intron_variant intron_variant	MODIFIER	HG03098.hp1 HG03098.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0009 a0001c0001t0009	a0001c0001t0009g0233 a0001c0001t0009g0233	1	282	0.0036	40	c.453 others(59): Show c.453-29041_453-29040insTATATATATATATACACACACACACA CACACACACACACA	GRAMD1B	ENSG00000023171.20	transcript	ENST00000635736.2	protein_coding	2/19		INFO_REALIGN_3_PRIME	chr11	TogoVar
GRAMD1B_chr11_123425269_123632767	123589612	T T	TTATATAT others(33): Show TTATATATATATATATATATATATATATATATATATATATA	intron_variant intron_variant	MODIFIER	NA21309.hp2 NA21309.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0070 a0001c0001t0070	a0001c0001t0070g0213 a0001c0001t0070g0213	1	282	0.0036	40	c.685 others(57): Show c.685-4469_685-4468insATATATATATATATATATATATATATAT ATATATATATAT	GRAMD1B	ENSG00000023171.20	transcript	ENST00000635736.2	protein_coding	4/19		INFO_REALIGN_3_PRIME	chr11	TogoVar
GRAMD1B_chr11_123425269_123632767	123589614	T T	TTATATAT others(33): Show TTATATATATATATATATATATATATATATATATATATATA	intron_variant intron_variant	MODIFIER	HG02258.hp2 HG02258.hp2	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0036 a0001c0003t0036	a0001c0003t0036g0238 a0001c0003t0036g0238	1	282	0.0036	40	c.685 others(57): Show c.685-4445_685-4444insATATATATATATATATATATATATATAT ATATATATATAT	GRAMD1B	ENSG00000023171.20	transcript	ENST00000635736.2	protein_coding	4/19		INFO_REALIGN_3_PRIME	chr11	TogoVar
GRAMD2A_chr15_72154806_72202787	72175560	A A	ATCTACCT others(33): Show ATCTACCTGGGGAGTTCCGGTCATCTTTCAAGCCCCAGGTG	intron_variant intron_variant	MODIFIER	NA19062.hp2 NA19062.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0154 a0001c0001t0001g0154	1	366	0.0027	40	c.42- others(55): Show c.42-5661_42-5622dupCACCTGGGGCTTGAAAGATGACCGGAACTC CCCAGGTAGA	GRAMD2A	ENSG00000175318.12	transcript	ENST00000309731.12	protein_coding	1/11			chr15	TogoVar
GRAMD4_chr22_46615386_46684785	46648951	G G	GATGGATG others(33): Show GATGGATGGATGGATGGATGCATGGATGGATGGATGGATGC	intron_variant intron_variant	MODIFIER	HG00642.hp1 HG00642.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0312 a0001c0001t0002g0312	1	328	0.0031	40	c.284 others(57): Show c.284-9217_284-9216insCATGGATGGATGGATGGATGCATGGATG GATGGATGGATG	GRAMD4	ENSG00000075240.17	transcript	ENST00000406902.6	protein_coding	3/18		INFO_REALIGN_3_PRIME	chr22	TogoVar
GRAMD4_chr22_46615386_46684785	46680582	C C	CCCACCAC others(33): Show CCCACCACCCACCCAATCATCCTCATCGCTCATCCATCCCA	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01884.hp1 HG01884.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0004	a0001c0001t0004g0061 a0001c0001t0004g0061	1	328	0.0031	40	c.33 others(51): Show c.3331_*3332insCCACCACCCACCCAATCATCCTCATCGCTCATCC ATCCCA	GRAMD4	ENSG00000075240.17	transcript	ENST00000406902.6	protein_coding		798		chr22	TogoVar
GREB1_chr2_11529045_11647788	11539017	C C	CCTTCTCT others(33): Show CCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCT	intron_variant intron_variant	MODIFIER	HG02280.hp1 HG03579.hp1 HG02280.hp1 HG03579.hp1	a0002 a0003 a0002 a0003	a0002c0007 a0003c0009 a0002c0007 a0003c0009	a0002c0007t0052 a0003c0009t0021 a0002c0007t0052 a0003c0009t0021	a0002c0007t0052g0075 a0003c0009t0021g0308 a0002c0007t0052g0075 a0003c0009t0021g0308	2	308	0.0065	40	c.-16 others(59): Show c.-162+4777_-162+4816dupCTCTTCTCTTCTCTTCTCTTCTCTTC TCTTCTCTTCTCTT	GREB1	ENSG00000196208.14	transcript	ENST00000381486.7	protein_coding	1/32		INFO_REALIGN_3_PRIME	chr2	TogoVar
GREM2_chr1_240484573_240617155	240563117	A A	ATGTGAGT others(33): Show ATGTGAGTGTGTGTATGCGTGTATGTGTGTATGTGTGTACG	intron_variant intron_variant	MODIFIER	NA18966.hp2 NA18966.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0289 a0001c0001t0001g0289	1	376	0.0027	40	c.-2+ others(57): Show c.-2+48766_-2+48767insCGTACACACATACACACATACACGCATA CACACACTCACA	GREM2	ENSG00000180875.5	transcript	ENST00000318160.5	protein_coding	1/1			chr1	TogoVar
GRHL1_chr2_9946693_10007277	9998582	G G	GTGTACAC others(33): Show GTGTACACACATATATACATATATGTGTACACACATATATA	intron_variant intron_variant	MODIFIER	HG02622.hp1 HG02622.hp1	a0003 a0003	a0003c0012 a0003c0012	a0003c0012t0002 a0003c0012t0002	a0003c0012t0002g0375 a0003c0012t0002g0375	1	418	0.0024	40	c.167 others(57): Show c.1678-382_1678-381insGTACACACATATATACATATATGTGTAC ACACATATATAT	GRHL1	ENSG00000134317.18	transcript	ENST00000324907.14	protein_coding	14/15		INFO_REALIGN_3_PRIME	chr2	TogoVar
GRHL2_chr8_101487439_101674726	101509187	T T	TCTTTCTT others(33): Show TCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTCTTTCTTTC	intron_variant intron_variant	MODIFIER	HG01256.hp2 HG01256.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0107 a0001c0001t0002g0107	1	306	0.0033	40	c.20+ others(57): Show c.20+16398_20+16399insCTTTCTTTCTTTCTTTCTTTCTTTCTTT CTTCTTTCTTTC	GRHL2	ENSG00000083307.12	transcript	ENST00000646743.1	protein_coding	1/15			chr8	TogoVar
GRIA1_chr5_153485670_153818869	153566304	C C	CTTTTTTT others(33): Show CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0002 a0001c0002t0002	a0001c0002t0002g0087 a0001c0002t0002g0087	1	194	0.0052	40	c.220 others(59): Show c.220+72255_220+72256insTTTTTTTTTTTTTTTTTTTTTTTTTT TTTTTTTTTTTTTT	GRIA1	ENSG00000155511.19	transcript	ENST00000285900.10	protein_coding	2/15		INFO_REALIGN_3_PRIME	chr5	TogoVar
GRIA2_chr4_157215728_157371075	157355600	A A	ATATTTAT others(33): Show ATATTTATATATATTTATTTATATATATATTTATATATATT	intron_variant intron_variant	MODIFIER	HG02165.hp2 HG02165.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0175 a0001c0002t0001g0175	1	216	0.0046	40	c.204 others(59): Show c.2044-4269_2044-4268insATTTATATATATTTATTTATATATAT TTATTTATATATAT	GRIA2	ENSG00000120251.22	transcript	ENST00000264426.14	protein_coding	12/15		INFO_REALIGN_3_PRIME	chr4	TogoVar
GRIA3_chrX_123179278_123495915	123260457	A A	AAAGAAAG others(33): Show AAAGAAAGAAAGAAAGGAAGGAAGGAAGGAAGGAAGGAAGG	intron_variant intron_variant	MODIFIER	HG00639.hp2 HG01070.hp1 HG00639.hp2 HG01070.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0006 a0001c0001t0001 a0001c0001t0006	a0001c0001t0001g0032 a0001c0001t0006g0179 a0001c0001t0001g0032 a0001c0001t0006g0179	2	207	0.0097	40	c.508 others(57): Show c.508+6918_508+6919insAAAGAAAGAAAGGAAGGAAGGAAGGAAG GAAGGAAGGAAG	GRIA3	ENSG00000125675.20	transcript	ENST00000620443.2	protein_coding	3/15		INFO_REALIGN_3_PRIME	chrX	TogoVar
GRIA3_chrX_123179278_123495915	123463576	A A	AAGGAAGG others(33): Show AAGGAAGGAAGGAAGGAAGGAAGGAAGGGAGGGAGGGAGGG	intron_variant intron_variant	MODIFIER	HG01167.hp1 HG01169.hp2 HG01167.hp1 HG01169.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0057 a0001c0001t0002g0065 a0001c0001t0002g0057 a0001c0001t0002g0065	2	207	0.0097	40	c.207 others(59): Show c.2077-1286_2077-1285insAAGGAAGGAAGGAAGGAAGGAAGGGA GGGAGGGAGGGAGG	GRIA3	ENSG00000125675.20	transcript	ENST00000620443.2	protein_coding	12/15		INFO_REALIGN_3_PRIME	chrX	TogoVar
GRID1_chr10_85594552_86371795	85599802	A A	AAAATATA others(33): Show AAAATATATATATATATATATATATATATATATATATATAT	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG04199.hp1 HG04199.hp1	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0048 a0001c0003t0048	a0001c0003t0048g0038 a0001c0003t0048g0038	1	96	0.0104	40	c.24 others(51): Show c.2470_*2471insATATATATATATATATATATATATATATATATAT ATATTT	GRID1	ENSG00000182771.19	transcript	ENST00000327946.12	protein_coding	16/16	2470		chr10	TogoVar
GRID1_chr10_85594552_86371795	85737673	T T	TATATATA others(33): Show TATATATATATATATATATATATATATATATATATATATAA	intron_variant intron_variant	MODIFIER	HG02735.hp2 HG02735.hp2	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0055 a0001c0003t0055	a0001c0003t0055g0044 a0001c0003t0055g0044	1	96	0.0104	40	c.123 others(59): Show c.1234-8060_1234-8059insTTATATATATATATATATATATATAT ATATATATATATAT	GRID1	ENSG00000182771.19	transcript	ENST00000327946.12	protein_coding	8/15			chr10	TogoVar
GRID1_chr10_85594552_86371795	86080454	G G	GAGGGAAG others(33): Show GAGGGAAGGGAAGGGAAGGGAAGGGAAGGGAAGGGAAGGGA	intron_variant intron_variant	MODIFIER	HG01884.hp2 HG01884.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0011 a0001c0002t0011	a0001c0002t0011g0077 a0001c0002t0011g0077	1	96	0.0104	40	c.726 others(59): Show c.726+58364_726+58365insTCCCTTCCCTTCCCTTCCCTTCCCTT CCCTTCCCTTCCCT	GRID1	ENSG00000182771.19	transcript	ENST00000327946.12	protein_coding	4/15			chr10	TogoVar
GRID1_chr10_85594552_86371795	86080464	G G	GAGGGAAG others(33): Show GAGGGAAGGGAAGGGAAGGGAAGGGAAGGGAAGGGAAGGGA	intron_variant intron_variant	MODIFIER	HG03540.hp2 HG03540.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0017 a0001c0001t0002g0017	1	96	0.0104	40	c.726 others(59): Show c.726+58354_726+58355insTCCCTTCCCTTCCCTTCCCTTCCCTT CCCTTCCCTTCCCT	GRID1	ENSG00000182771.19	transcript	ENST00000327946.12	protein_coding	4/15			chr10	TogoVar
GRID1_chr10_85594552_86371795	86226450	T T	TACCCTCC others(33): Show TACCCTCCCACCCCAGCACACCCTCACTCCCACCCCAGCAC	intron_variant intron_variant	MODIFIER	NA21309.hp1 NA21309.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0003 a0001c0002t0003	a0001c0002t0003g0060 a0001c0002t0003g0060	1	96	0.0104	40	c.236 others(59): Show c.236-19803_236-19802insGTGCTGGGGTGGGAGTGAGGGTGTGC TGGGGTGGGAGGGT	GRID1	ENSG00000182771.19	transcript	ENST00000327946.12	protein_coding	2/15			chr10	TogoVar
GRID2_chr4_92298966_93779566	92460032	C C	CTATATAT others(33): Show CTATATATATATATATATATATATATATATATATATATATA	intron_variant intron_variant	MODIFIER	HG02615.hp1 HG02615.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0019 a0001c0001t0001g0019	1	34	0.0294	40	c.89- others(59): Show c.89-130077_89-130076insTATATATATATATATATATATATATA TATATATATATATA	GRID2	ENSG00000152208.13	transcript	ENST00000282020.9	protein_coding	1/15		INFO_REALIGN_3_PRIME	chr4	TogoVar
GRID2_chr4_92298966_93779566	92895384	C C	CATATATA others(33): Show CATATATATATATATATATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	NA19030.hp2 NA19030.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0034 a0001c0001t0001g0034	1	34	0.0294	40	c.245 others(61): Show c.245-189590_245-189589insTATATATATATATATATATATATA TATATATATATATATA	GRID2	ENSG00000152208.13	transcript	ENST00000282020.9	protein_coding	2/15		INFO_REALIGN_3_PRIME	chr4	TogoVar
GRID2_chr4_92298966_93779566	93398133	G G	GTGTGTGT others(33): Show GTGTGTGTGTGTGTATATATATATATATATATATATATATA	intron_variant intron_variant	MODIFIER	NA19030.hp2 NA19030.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0034 a0001c0001t0001g0034	1	34	0.0294	40	c.134 others(59): Show c.1347+2426_1347+2427insGTGTGTGTGTGTATATATATATATAT ATATATATATATAT	GRID2	ENSG00000152208.13	transcript	ENST00000282020.9	protein_coding	9/15		INFO_REALIGN_3_PRIME	chr4	TogoVar
GRIK1_chr21_29531933_29944996	29560400	C C	CCTTCCTT others(33): Show CCTTCCTTCCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTT	intron_variant intron_variant	MODIFIER	NA19240.hp2 NA19240.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0066 a0001c0001t0001g0066	1	162	0.0062	40	c.235 others(59): Show c.2356+1223_2356+1224insAAAGAAAGAAAGAAAGAAAGAAAGAA AGAAAGGAAGGAAG	GRIK1	ENSG00000171189.18	transcript	ENST00000327783.9	protein_coding	15/17			chr21	TogoVar

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