Joint Open Genome and Omics Platform (JoGo)

Search by Variant

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Chr

Chromosome name (e.g., chr11).

Snpeff genename

Exact SnpEff gene name.

Sampleids

Target sampleid (e.g. HG02615).

Snpeff haplotype class

Haplotype-annotation class (e.g., ahapid, ahapid+chapid).

Snpeff annotation impact

Exact impact level (e.g., HIGH, MODERATE, LOW).

Snpeff annotation impact detail

Keyword match in SnpEff annotation.

Hapid

One or more haplotype IDs (comma-separated; e.g., a0001, a01, a0001c0001, a01c02, a1c2, a0001c0001t0005, a0001c0001t0005g0018).

Samplehapid

Sample haplotype IDs to include (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

No_hapid

Haplotype IDs to exclude (comma-separated; e.g., a0001, a0002, a0001c0001, a0001c0001t0005, a1, a01).

No_samplehapid

Sample haplotype IDs to exclude (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

Start

Start position (GRCh38).

End

End position (GRCh38).

Minac

Minimum alternate allele count (≥).

Maxac

Maximum alternate allele count (≤).

Minlen

Minimum variant length (≥).

Maxlen

Maximum variant length (≤).

Sort By

Select column to sort.

Order by

Ascending or descending.

Show

Results per page.

regionname	pos	ref	alt	annotation	impact	samples	ahapids	achapids	acthapids	actghapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	external
FOXI1_chr5_170100897_170114734	170105356	G G	GGGGGGGG others(35): Show GGGGGGGGGGGGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA	upstream_gene_variant upstream_gene_variant	MODIFIER	NA18955.hp2 NA18955.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0002 a0001c0002t0002	a0001c0002t0002g0004 a0001c0002t0002g0004	1	412	0.0024	42	c.-60 others(51): Show c.-602_-601insGGGGGGGGGGGGGAGAGAGAGAGAGAGAGAGAGAGA GAGAGA	FOXI1	ENSG00000168269.10	transcript	ENST00000306268.8	protein_coding		540		chr5	TogoVar
FOXI1_chr5_170100897_170114734	170105356	G G	GGGGGGGG others(35): Show GGGGGGGGGGGGGGGGAGAGAGAGAGAGAGAGAGAGAGAGAGA	upstream_gene_variant upstream_gene_variant	MODIFIER	NA18966.hp1 NA18966.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0002 a0001c0002t0002	a0001c0002t0002g0004 a0001c0002t0002g0004	1	412	0.0024	42	c.-60 others(51): Show c.-602_-601insGGGGGGGGGGGGGGGAGAGAGAGAGAGAGAGAGAGA GAGAGA	FOXI1	ENSG00000168269.10	transcript	ENST00000306268.8	protein_coding		540		chr5	TogoVar
FOXI1_chr5_170100897_170114734	170105368	G G	GGAGAGAG others(35): Show GGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01433.hp2 HG01517.hp1 HG02132.hp1 others(4): Show HG01433.hp2 HG01517.hp1 HG02132.hp1 HG03831.hp2 HG03834.hp2 NA18954.hp2 NA18978.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0001 a0001c0001t0001g0003 a0001c0001t0001g0001 a0001c0001t0001g0003	7	412	0.0170	42	c.-59 others(51): Show c.-590_-589insGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA GAGAGA	FOXI1	ENSG00000168269.10	transcript	ENST00000306268.8	protein_coding		528		chr5	TogoVar
FOXI1_chr5_170100897_170114734	170105370	G G	GGAGAGAG others(35): Show GGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02004.hp1 HG02300.hp2 HG02004.hp1 HG02300.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0001 a0001c0001t0001g0001	2	412	0.0049	42	c.-58 others(51): Show c.-588_-587insGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA GAGAGA	FOXI1	ENSG00000168269.10	transcript	ENST00000306268.8	protein_coding		526		chr5	TogoVar
FOXI2_chr10_127732185_127746183	127739839	T T	TCACACTC others(35): Show TCACACTCACACCCACACCCACACCCACACCCACACCCACACC	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	NA18977.hp2 NA18977.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0131 a0001c0001t0131	a0001c0001t0131g0001 a0001c0001t0131g0001	1	434	0.0023	42	c.88 others(51): Show c.885_*886insCCACACCCACACCCACACCCACACCCACACCCACAC TCACAC	FOXI2	ENSG00000186766.8	transcript	ENST00000388920.5	protein_coding	2/2	886	INFO_REALIGN_3_PRIME	chr10	TogoVar
FOXJ2_chr12_8027716_8060517	8050931	C C	CCCCTTCC others(35): Show CCCCTTCCTTTCCTCTTCCCTTCCCCTCCCTTCCCTTCCCCTT	intron_variant intron_variant	MODIFIER	HG00738.hp2 HG00738.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0019 a0001c0001t0019	a0001c0001t0019g0146 a0001c0001t0019g0146	1	374	0.0027	42	c.163 others(59): Show c.1636+318_1636+319insTTTCCTCTTCCCTTCCCCTCCCTTCCCT TCCCCTTCCCTTCC	FOXJ2	ENSG00000065970.9	transcript	ENST00000162391.8	protein_coding	10/10		INFO_REALIGN_3_PRIME	chr12	TogoVar
FOXJ3_chr1_42171548_42340235	42221999	G G	GGGAGGAG others(35): Show GGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGA	intron_variant intron_variant	MODIFIER	HG02976.hp1 HG02976.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0012 a0001c0001t0012	a0001c0001t0012g0020 a0001c0001t0012g0020	1	332	0.0030	42	c.528 others(59): Show c.528+5883_528+5884insTCCTCCTCCTCCTCCTCCTCCTCCTCCT CCTCCTCCTCCTCC	FOXJ3	ENSG00000198815.9	transcript	ENST00000361346.6	protein_coding	5/12			chr1	TogoVar
FOXN3_chr14_89151177_89422233	89360992	C C	CACTACCA others(35): Show CACTACCACCTCCAGCACCACCTCCACCACCACCTCCACCACT	intron_variant intron_variant	MODIFIER	HG00639.hp2 HG00639.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0101 a0001c0001t0001g0101	1	230	0.0044	42	c.544 others(61): Show c.544-10185_544-10184insAGTGGTGGAGGTGGTGGTGGAGGTGG TGCTGGAGGTGGTAGT	FOXN3	ENSG00000053254.16	transcript	ENST00000557258.6	protein_coding	2/5			chr14	TogoVar
FOXN3_chr14_89151177_89422233	89361028	C C	CACCACCA others(35): Show CACCACCACCTCCAGCACCACCACCACCACCACCTCCACCACT	intron_variant intron_variant	MODIFIER	NA18950.hp1 NA18950.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0004	a0001c0001t0004g0191 a0001c0001t0004g0191	1	230	0.0044	42	c.544 others(61): Show c.544-10221_544-10220insAGTGGTGGAGGTGGTGGTGGTGGTGG TGCTGGAGGTGGTGGT	FOXN3	ENSG00000053254.16	transcript	ENST00000557258.6	protein_coding	2/5			chr14	TogoVar
FOXN3_chr14_89151177_89422233	89361038	A A	AGCACCAC others(35): Show AGCACCACCTCCACCACCACCACCACCACCTCCAGCACCACCT	intron_variant intron_variant	MODIFIER	HG01255.hp1 HG01255.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0141 a0001c0001t0003g0141	1	230	0.0044	42	c.544 others(61): Show c.544-10231_544-10230insAGGTGGTGCTGGAGGTGGTGGTGGTG GTGGTGGAGGTGGTGC	FOXN3	ENSG00000053254.16	transcript	ENST00000557258.6	protein_coding	2/5			chr14	TogoVar
FOXN3_chr14_89151177_89422233	89361058	T T	TACCTCCA others(35): Show TACCTCCACCACTACCACCTCCAGCACCACCTCCACCACCACC	intron_variant intron_variant	MODIFIER	HG01243.hp1 HG01243.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0012 a0001c0001t0012	a0001c0001t0012g0125 a0001c0001t0012g0125	1	230	0.0044	42	c.544 others(61): Show c.544-10251_544-10250insGGTGGTGGTGGAGGTGGTGCTGGAGG TGGTAGTGGTGGAGGT	FOXN3	ENSG00000053254.16	transcript	ENST00000557258.6	protein_coding	2/5			chr14	TogoVar
FOXN3_chr14_89151177_89422233	89361128	T T	TCCACCAC others(35): Show TCCACCACCACCACCTCCAGCACCACCTCCACCACCACCTCCA	intron_variant intron_variant	MODIFIER	HG03239.hp1 HG03239.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0035 a0001c0001t0001g0035	1	230	0.0044	42	c.544 others(61): Show c.544-10321_544-10320insTGGAGGTGGTGGTGGAGGTGGTGCTG GAGGTGGTGGTGGTGG	FOXN3	ENSG00000053254.16	transcript	ENST00000557258.6	protein_coding	2/5			chr14	TogoVar
FOXN3_chr14_89151177_89422233	89361364	C C	CACCACCT others(35): Show CACCACCTCCACCACCACCACCTCCACCACCACCTCCAGCACT	intron_variant intron_variant	MODIFIER	NA19007.hp1 NA19007.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0007 a0001c0001t0007	a0001c0001t0007g0014 a0001c0001t0007g0014	1	230	0.0044	42	c.544 others(61): Show c.544-10557_544-10556insAGTGCTGGAGGTGGTGGTGGAGGTGG TGGTGGTGGAGGTGGT	FOXN3	ENSG00000053254.16	transcript	ENST00000557258.6	protein_coding	2/5			chr14	TogoVar
FOXN3_chr14_89151177_89422233	89361450	T T	TCCACCAC others(35): Show TCCACCACCACCACCTCCAGCACCACCTCCACCACCACCTCCA	intron_variant intron_variant	MODIFIER	HG01517.hp1 HG01517.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0005 a0001c0001t0005	a0001c0001t0005g0099 a0001c0001t0005g0099	1	230	0.0044	42	c.544 others(61): Show c.544-10643_544-10642insTGGAGGTGGTGGTGGAGGTGGTGCTG GAGGTGGTGGTGGTGG	FOXN3	ENSG00000053254.16	transcript	ENST00000557258.6	protein_coding	2/5			chr14	TogoVar
FOXN3_chr14_89151177_89422233	89361532	C C	CCACTACC others(35): Show CCACTACCACCTCCAGCACCACCTCCACCACTACCACCTCCAG	intron_variant intron_variant	MODIFIER	NA18998.hp1 NA18998.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0008 a0001c0001t0008	a0001c0001t0008g0139 a0001c0001t0008g0139	1	230	0.0044	42	c.544 others(61): Show c.544-10725_544-10724insCTGGAGGTGGTAGTGGTGGAGGTGGT GCTGGAGGTGGTAGTG	FOXN3	ENSG00000053254.16	transcript	ENST00000557258.6	protein_coding	2/5			chr14	TogoVar
FOXN3_chr14_89151177_89422233	89361612	A A	ACCTCCAC others(35): Show ACCTCCACCACCACCTCCACCACCACCACCTCCAGCACCACCT	intron_variant intron_variant	MODIFIER	HG01934.hp2 NA20300.hp1 HG01934.hp2 NA20300.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0069 a0001c0001t0003 a0001c0001t0069	a0001c0001t0003g0069 a0001c0001t0069g0122 a0001c0001t0003g0069 a0001c0001t0069g0122	2	230	0.0087	42	c.544 others(61): Show c.544-10805_544-10804insAGGTGGTGCTGGAGGTGGTGGTGGTG GAGGTGGTGGTGGAGG	FOXN3	ENSG00000053254.16	transcript	ENST00000557258.6	protein_coding	2/5			chr14	TogoVar
FOXN3_chr14_89151177_89422233	89361645	T T	TCCACCAC others(35): Show TCCACCACCACCTCCACCACCTCCACCACCACCACCACCACCA	intron_variant intron_variant	MODIFIER	NA18969.hp1 NA18969.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0010 a0001c0001t0010	a0001c0001t0010g0077 a0001c0001t0010g0077	1	230	0.0044	42	c.544 others(61): Show c.544-10838_544-10837insTGGTGGTGGTGGTGGTGGTGGAGGTG GTGGAGGTGGTGGTGG	FOXN3	ENSG00000053254.16	transcript	ENST00000557258.6	protein_coding	2/5			chr14	TogoVar
FOXN3_chr14_89151177_89422233	89361677	C C	CACTACCA others(35): Show CACTACCACCTCCAGCACCACCTCCACCACCACCTCCACCACT	intron_variant intron_variant	MODIFIER	NA18964.hp2 NA18995.hp1 NA18964.hp2 NA18995.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0025 a0001c0001t0001 a0001c0001t0025	a0001c0001t0001g0227 a0001c0001t0025g0228 a0001c0001t0001g0227 a0001c0001t0025g0228	2	230	0.0087	42	c.544 others(61): Show c.544-10870_544-10869insAGTGGTGGAGGTGGTGGTGGAGGTGG TGCTGGAGGTGGTAGT	FOXN3	ENSG00000053254.16	transcript	ENST00000557258.6	protein_coding	2/5			chr14	TogoVar
FOXN3_chr14_89151177_89422233	89361696	T T	TCCACCAC others(35): Show TCCACCACCTCCACCACCACCTCCACCACCACCACCTCCAGCA	intron_variant intron_variant	MODIFIER	NA20300.hp1 NA20300.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0069 a0001c0001t0003g0069	1	230	0.0044	42	c.544 others(61): Show c.544-10889_544-10888insTGCTGGAGGTGGTGGTGGTGGAGGTG GTGGTGGAGGTGGTGG	FOXN3	ENSG00000053254.16	transcript	ENST00000557258.6	protein_coding	2/5			chr14	TogoVar
FOXN3_chr14_89151177_89422233	89362121	C C	CACCACCT others(35): Show CACCACCTCCAGCACCACCTCCACCACCACCACCTCCAGCACT	intron_variant intron_variant	MODIFIER	HG00544.hp2 HG00544.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0009 a0001c0001t0009	a0001c0001t0009g0019 a0001c0001t0009g0019	1	230	0.0044	42	c.544 others(61): Show c.544-11314_544-11313insAGTGCTGGAGGTGGTGGTGGTGGAGG TGGTGCTGGAGGTGGT	FOXN3	ENSG00000053254.16	transcript	ENST00000557258.6	protein_coding	2/5			chr14	TogoVar
FOXN3_chr14_89151177_89422233	89363963	T T	TATATATA others(35): Show TATATATATATATATAATATATATATATATATATATATATATA	intron_variant intron_variant	MODIFIER	HG00673.hp1 HG00673.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0006 a0001c0001t0006	a0001c0001t0006g0219 a0001c0001t0006g0219	1	230	0.0044	42	c.544 others(61): Show c.544-13156_544-13155insTATATATATATATATATATATATATA TTATATATATATATAT	FOXN3	ENSG00000053254.16	transcript	ENST00000557258.6	protein_coding	2/5			chr14	TogoVar
FOXN3_chr14_89151177_89422233	89363967	T T	TATATATA others(35): Show TATATATATATATATATAATATATATATATATATATATATATA	intron_variant intron_variant	MODIFIER	HG02109.hp1 HG02109.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0031 a0001c0001t0031	a0001c0001t0031g0002 a0001c0001t0031g0002	1	230	0.0044	42	c.544 others(61): Show c.544-13160_544-13159insTATATATATATATATATATATATATT ATATATATATATATAT	FOXN3	ENSG00000053254.16	transcript	ENST00000557258.6	protein_coding	2/5			chr14	TogoVar
FOXN4_chr12_109272978_109314284	109312068	A A	AAATCAAC others(35): Show AAATCAACTCAGTCATAACTGGGAACACCAGTTCCTCACATGC	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02559.hp2 HG02559.hp2	a0001 a0001	a0001c0005 a0001c0005	a0001c0005t0001 a0001c0005t0001	a0001c0005t0001g0268 a0001c0005t0001g0268	1	368	0.0027	42	c.-29 others(53): Show c.-2954_-2953insGCATGTGAGGAACTGGTGTTCCCAGTTATGACTG AGTTGATT	FOXN4	ENSG00000139445.18	transcript	ENST00000299162.10	protein_coding		2785		chr12	TogoVar
FOXP1_chr3_70949708_71588728	71396955	T T	TATATATA others(35): Show TATATATATACACATATATATATGTGTGTGTATATATATACAC	intron_variant intron_variant	MODIFIER	HG00735.hp1 HG00735.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0017 a0001c0001t0017	a0001c0001t0017g0052 a0001c0001t0017g0052	1	96	0.0104	42	c.-16 others(63): Show c.-167-37712_-167-37711insGTGTATATATATACACACACATAT ATATATGTGTATATATAT	FOXP1	ENSG00000114861.24	transcript	ENST00000649528.3	protein_coding	3/20			chr3	TogoVar
FOXP1_chr3_70949708_71588728	71585813	T T	TCCTAGAG others(35): Show TCCTAGAGGCTAGGGTTCGACGTCTTGTTTGTCAAGACATAAA	upstream_gene_variant upstream_gene_variant	MODIFIER	HG03209.hp1 HG03209.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0014 a0001c0001t0014	a0001c0001t0014g0066 a0001c0001t0014g0066	1	96	0.0104	42	c.-26 others(53): Show c.-2690_-2689insTTTATGTCTTGACAAACAAGACGTCGAACCCTAG CCTCTAGG	FOXP1	ENSG00000114861.24	transcript	ENST00000649528.3	protein_coding		2086		chr3	TogoVar
FOXQ1_chr6_1307098_1319758	1316953	C C	CCCGCCCC others(35): Show CCCGCCCCCCCTCCAGCCTACCCCTCCCCCCGCCCACCCCCCT	downstream_gene_variant downstream_gene_variant	MODIFIER	NA18992.hp2 NA18992.hp2	a0005 a0005	a0005c0011 a0005c0011	a0005c0011t0001 a0005c0011t0001	a0005c0011t0001g0000 a0005c0011t0001g0000	1	406	0.0025	42	c.30 others(53): Show c.3037_*3038insCCGCCCCCCCTCCAGCCTACCCCTCCCCCCGCCC ACCCCCCT	FOXQ1	ENSG00000164379.7	transcript	ENST00000296839.5	protein_coding		2196		chr6	TogoVar
FOXQ1_chr6_1307098_1319758	1316957	C C	CCCCCCCT others(35): Show CCCCCCCTCCAGCCTACCCCTCCCCCCGCCCACCCCCCTCCCG	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00280.hp2 HG00423.hp1 HG01168.hp2 others(3): Show HG00280.hp2 HG00423.hp1 HG01168.hp2 NA18966.hp1 NA18987.hp1 NA18998.hp1	a0001 a0004 a0001 a0004	a0001c0001 a0004c0003 a0001c0001 a0004c0003	a0001c0001t0002 a0004c0003t0001 a0004c0003t0005 a0001c0001t0002 a0004c0003t0001 a0004c0003t0005	a0001c0001t0002g0000 a0004c0003t0001g0000 a0004c0003t0005g0000 a0001c0001t0002g0000 a0004c0003t0001g0000 a0004c0003t0005g0000	6	406	0.0148	42	c.30 others(53): Show c.3041_*3042insCCCCCCTCCAGCCTACCCCTCCCCCCGCCCACCC CCCTCCCG	FOXQ1	ENSG00000164379.7	transcript	ENST00000296839.5	protein_coding		2200		chr6	TogoVar
FOXQ1_chr6_1307098_1319758	1316972	A A	ACCCCTCC others(35): Show ACCCCTCCCCCCGCCCACCCCCCTCCCGCCCCCCCTCCAGCCT	downstream_gene_variant downstream_gene_variant	MODIFIER	NA18940.hp1 NA18943.hp2 NA18960.hp1 others(1): Show NA18940.hp1 NA18943.hp2 NA18960.hp1 NA18990.hp2	a0005 a0005	a0005c0007 a0005c0011 a0005c0007 a0005c0011	a0005c0007t0001 a0005c0011t0001 a0005c0007t0001 a0005c0011t0001	a0005c0007t0001g0000 a0005c0011t0001g0000 a0005c0007t0001g0000 a0005c0011t0001g0000	4	406	0.0099	42	c.30 others(53): Show c.3056_*3057insCCCCTCCCCCCGCCCACCCCCCTCCCGCCCCCCC TCCAGCCT	FOXQ1	ENSG00000164379.7	transcript	ENST00000296839.5	protein_coding		2215		chr6	TogoVar
FOXQ1_chr6_1307098_1319758	1317079	C C	CCCTCCTC others(35): Show CCCTCCTCCCGCCCCCCTCCAGCCTACCCCTCCCCCACCCATT	downstream_gene_variant downstream_gene_variant	MODIFIER	NA19077.hp1 NA19077.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0000 a0001c0001t0002g0000	1	406	0.0025	42	c.31 others(53): Show c.3163_*3164insCCTCCTCCCGCCCCCCTCCAGCCTACCCCTCCCC CACCCATT	FOXQ1	ENSG00000164379.7	transcript	ENST00000296839.5	protein_coding		2322		chr6	TogoVar
FOXQ1_chr6_1307098_1319758	1317098	C C	CCAGCCTA others(35): Show CCAGCCTACCCCTCCCCCCACCCATTCCCTCCTCCCGCCCCCT	downstream_gene_variant downstream_gene_variant	MODIFIER	NA18960.hp1 NA18960.hp1	a0005 a0005	a0005c0007 a0005c0007	a0005c0007t0001 a0005c0007t0001	a0005c0007t0001g0000 a0005c0007t0001g0000	1	406	0.0025	42	c.31 others(53): Show c.3182_*3183insCAGCCTACCCCTCCCCCCACCCATTCCCTCCTCC CGCCCCCT	FOXQ1	ENSG00000164379.7	transcript	ENST00000296839.5	protein_coding		2341		chr6	TogoVar
FRA10AC1_chr10_93662883_93707592	93693673	C C	CATATATA others(35): Show CATATATATATACCATATATATATACACCATATATATATATAT	intron_variant intron_variant	MODIFIER	HG00741.hp1 HG01081.hp1 HG01123.hp1 others(16): Show HG00741.hp1 HG01081.hp1 HG01123.hp1 HG01256.hp1 HG01258.hp1 HG01433.hp2 HG01952.hp1 HG01975.hp2 HG01978.hp2 HG01981.hp2 HG02148.hp1 HG02293.hp2 HG02738.hp2 HG04204.hp1 NA18965.hp2 NA19054.hp1 NA19055.hp1 NA19060.hp2 NA19084.hp1	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0001 a0002c0002t0037 a0002c0002t0001 a0002c0002t0037	a0002c0002t0001g0009 a0002c0002t0001g0022 a0002c0002t0001g0049 others(8): Show a0002c0002t0001g0009 a0002c0002t0001g0022 a0002c0002t0001g0049 a0002c0002t0001g0050 a0002c0002t0001g0166 a0002c0002t0001g0169 a0002c0002t0001g0170 a0002c0002t0001g0171 a0002c0002t0001g0172 a0002c0002t0001g0173 a0002c0002t0037g0204	19	364	0.0522	42	c.297 others(57): Show c.297-945_297-944insATATATATATATATGGTGTATATATATATG GTATATATATAT	FRA10AC1	ENSG00000148690.12	transcript	ENST00000359204.5	protein_coding	5/13			chr10	TogoVar
FRA10AC1_chr10_93662883_93707592	93693673	C C	CATATATA others(35): Show CATATATATATACCATATATATATATACACCATATATATATAT	intron_variant intron_variant	MODIFIER	HG00438.hp2 HG00597.hp1 HG02040.hp1 others(4): Show HG00438.hp2 HG00597.hp1 HG02040.hp1 HG02155.hp1 NA18940.hp2 NA18973.hp1 NA19062.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0001 a0002c0002t0032 a0002c0002t0001 a0002c0002t0032	a0002c0002t0001g0047 a0002c0002t0001g0158 a0002c0002t0001g0159 others(3): Show a0002c0002t0001g0047 a0002c0002t0001g0158 a0002c0002t0001g0159 a0002c0002t0001g0161 a0002c0002t0001g0199 a0002c0002t0032g0087	7	364	0.0192	42	c.297 others(57): Show c.297-945_297-944insATATATATATATGGTGTATATATATATATG GTATATATATAT	FRA10AC1	ENSG00000148690.12	transcript	ENST00000359204.5	protein_coding	5/13			chr10	TogoVar
FRAS1_chr4_78052323_78549269	78249064	C C	CATATATA others(35): Show CATATATATATATATATATATATATATATATGCATATATATAT	intron_variant intron_variant	MODIFIER	NA21309.hp2 NA21309.hp2	a0071 a0071	a0071c0104 a0071c0104	a0071c0104t0051 a0071c0104t0051	a0071c0104t0051g0127 a0071c0104t0051g0127	1	178	0.0056	42	c.310 others(59): Show c.310-3306_310-3305insATATATATGCATATATATATATATATAT ATATATATATATAT	FRAS1	ENSG00000138759.20	transcript	ENST00000512123.4	protein_coding	4/73		INFO_REALIGN_3_PRIME	chr4	TogoVar
FRAS1_chr4_78052323_78549269	78249064	C C	CATATATA others(35): Show CATATATATATATATATATGCATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG01106.hp1 HG04199.hp2 HG01106.hp1 HG04199.hp2	a0053 a0076 a0053 a0076	a0053c0064 a0076c0094 a0053c0064 a0076c0094	a0053c0064t0019 a0076c0094t0001 a0053c0064t0019 a0076c0094t0001	a0053c0064t0019g0033 a0076c0094t0001g0110 a0053c0064t0019g0033 a0076c0094t0001g0110	2	178	0.0112	42	c.310 others(59): Show c.310-3310_310-3309insGCATATATATATATATATATATATATAT ATATATATATATAT	FRAS1	ENSG00000138759.20	transcript	ENST00000512123.4	protein_coding	4/73		INFO_REALIGN_3_PRIME	chr4	TogoVar
FRAS1_chr4_78052323_78549269	78249064	C C	CATATATA others(35): Show CATATATATATATATATGCATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG00280.hp1 HG00280.hp2 HG00738.hp1 others(4): Show HG00280.hp1 HG00280.hp2 HG00738.hp1 HG03491.hp1 HG03710.hp2 HG03834.hp1 NA20300.hp1	a0001 a0026 a0032 others(2): Show a0001 a0026 a0032 a0048 a0058	a0001c0001 a0026c0029 a0032c0036 others(2): Show a0001c0001 a0026c0029 a0032c0036 a0048c0060 a0058c0086	a0001c0001t0005 a0001c0001t0009 a0001c0001t0052 others(4): Show a0001c0001t0005 a0001c0001t0009 a0001c0001t0052 a0026c0029t0001 a0032c0036t0005 a0048c0060t0006 a0058c0086t0022	a0001c0001t0005g0106 a0001c0001t0009g0124 a0001c0001t0052g0128 others(4): Show a0001c0001t0005g0106 a0001c0001t0009g0124 a0001c0001t0052g0128 a0026c0029t0001g0019 a0032c0036t0005g0022 a0048c0060t0006g0039 a0058c0086t0022g0123	7	178	0.0393	42	c.310 others(59): Show c.310-3312_310-3311insGCATATATATATATATATATATATATAT ATATATATATATAT	FRAS1	ENSG00000138759.20	transcript	ENST00000512123.4	protein_coding	4/73		INFO_REALIGN_3_PRIME	chr4	TogoVar
FREM1_chr9_14732152_14915428	14860553	A A	ATGTGTAT others(35): Show ATGTGTATATATATGTGTATATATATGTGTATATATATGTGTG	intron_variant intron_variant	MODIFIER	HG01074.hp2 HG01243.hp2 HG01884.hp1 others(16): Show HG01074.hp2 HG01243.hp2 HG01884.hp1 HG02257.hp1 HG02257.hp2 HG02486.hp2 HG02572.hp2 HG02630.hp2 HG02717.hp1 HG02818.hp2 HG02970.hp1 HG02970.hp2 HG03471.hp2 HG03486.hp2 HG06807.hp2 NA18522.hp1 NA18952.hp2 NA18984.hp1 NA18994.hp1	a0001 a0005 a0009 others(10): Show a0001 a0005 a0009 a0013 a0019 a0024 a0028 a0039 a0061 a0071 a0074 a0081 a0087	a0001c0045 a0001c0047 a0001c0048 others(15): Show a0001c0045 a0001c0047 a0001c0048 a0001c0158 a0001c0161 a0005c0159 a0009c0167 a0013c0151 a0019c0155 a0024c0162 a0028c0157 a0028c0174 a0039c0171 a0061c0153 a0071c0152 a0074c0156 a0081c0160 a0087c0163	a0001c0045t0005 a0001c0047t0005 a0001c0048t0005 others(15): Show a0001c0045t0005 a0001c0047t0005 a0001c0048t0005 a0001c0158t0001 a0001c0161t0001 a0005c0159t0001 a0009c0167t0001 a0013c0151t0001 a0019c0155t0001 a0024c0162t0001 a0028c0157t0001 a0028c0174t0001 a0039c0171t0001 a0061c0153t0001 a0071c0152t0001 a0074c0156t0001 a0081c0160t0001 a0087c0163t0001	a0001c0045t0005g0059 a0001c0045t0005g0206 a0001c0047t0005g0204 others(16): Show a0001c0045t0005g0059 a0001c0045t0005g0206 a0001c0047t0005g0204 a0001c0048t0005g0172 a0001c0158t0001g0060 a0001c0161t0001g0047 a0005c0159t0001g0056 a0009c0167t0001g0275 a0013c0151t0001g0279 a0019c0155t0001g0021 a0024c0162t0001g0098 a0028c0157t0001g0096 a0028c0174t0001g0173 a0039c0171t0001g0088 a0061c0153t0001g0209 a0071c0152t0001g0319 a0074c0156t0001g0022 a0081c0160t0001g0097 a0087c0163t0001g0095	19	346	0.0549	42	c.330 others(59): Show c.330-1070_330-1069insCACACATATATATACACATATATATACA CATATATATACACA	FREM1	ENSG00000164946.20	transcript	ENST00000380880.4	protein_coding	3/36			chr9	TogoVar
FREM1_chr9_14732152_14915428	14860555	A A	ATGTGTAT others(35): Show ATGTGTATATATATGTGTATATATATGTGTATATATATGTGTG	intron_variant intron_variant	MODIFIER	HG02615.hp1 HG02647.hp1 HG03453.hp1 others(3): Show HG02615.hp1 HG02647.hp1 HG03453.hp1 HG03453.hp2 HG03834.hp2 NA18522.hp2	a0001 a0006 a0031 others(3): Show a0001 a0006 a0031 a0052 a0082 a0111	a0001c0011 a0006c0166 a0031c0175 others(3): Show a0001c0011 a0006c0166 a0031c0175 a0052c0164 a0082c0172 a0111c0149	a0001c0011t0004 a0006c0166t0004 a0031c0175t0008 others(3): Show a0001c0011t0004 a0006c0166t0004 a0031c0175t0008 a0052c0164t0004 a0082c0172t0004 a0111c0149t0004	a0001c0011t0004g0032 a0006c0166t0004g0202 a0031c0175t0008g0208 others(3): Show a0001c0011t0004g0032 a0006c0166t0004g0202 a0031c0175t0008g0208 a0052c0164t0004g0091 a0082c0172t0004g0050 a0111c0149t0004g0242	6	346	0.0173	42	c.330 others(59): Show c.330-1072_330-1071insCACACATATATATACACATATATATACA CATATATATACACA	FREM1	ENSG00000164946.20	transcript	ENST00000380880.4	protein_coding	3/36			chr9	TogoVar
FREM1_chr9_14732152_14915428	14860555	A A	ATGTGTAT others(35): Show ATGTGTATATATATGTGTATATATATGTGTGTATATATGTGTG	intron_variant intron_variant	MODIFIER	HG03041.hp2 HG03041.hp2	a0039 a0039	a0039c0137 a0039c0137	a0039c0137t0004 a0039c0137t0004	a0039c0137t0004g0057 a0039c0137t0004g0057	1	346	0.0029	42	c.330 others(59): Show c.330-1072_330-1071insCACACATATATACACACATATATATACA CATATATATACACA	FREM1	ENSG00000164946.20	transcript	ENST00000380880.4	protein_coding	3/36			chr9	TogoVar
FREM1_chr9_14732152_14915428	14860556	C C	CACACATA others(35): Show CACACATATATATATACACATATATATACACACATATATATAT	intron_variant intron_variant	MODIFIER	HG01891.hp2 HG02886.hp1 HG01891.hp2 HG02886.hp1	a0001 a0008 a0001 a0008	a0001c0047 a0008c0057 a0001c0047 a0008c0057	a0001c0047t0008 a0008c0057t0003 a0001c0047t0008 a0008c0057t0003	a0001c0047t0008g0102 a0008c0057t0003g0089 a0001c0047t0008g0102 a0008c0057t0003g0089	2	346	0.0058	42	c.330 others(59): Show c.330-1073_330-1072insATATATATATGTGTGTATATATATGTGT ATATATATATGTGT	FREM1	ENSG00000164946.20	transcript	ENST00000380880.4	protein_coding	3/36			chr9	TogoVar
FREM1_chr9_14732152_14915428	14860560	C C	CATATATA others(35): Show CATATATATACACATATATATACACACATATATATATACACAT	intron_variant intron_variant	MODIFIER	HG03579.hp2 HG03579.hp2	a0003 a0003	a0003c0056 a0003c0056	a0003c0056t0004 a0003c0056t0004	a0003c0056t0004g0214 a0003c0056t0004g0214	1	346	0.0029	42	c.330 others(59): Show c.330-1077_330-1076insATGTGTATATATATATGTGTGTATATAT ATGTGTATATATAT	FREM1	ENSG00000164946.20	transcript	ENST00000380880.4	protein_coding	3/36			chr9	TogoVar
FREM1_chr9_14732152_14915428	14860780	T T	TATGCACA others(35): Show TATGCACATATATGCACATATATACACATATATACATATATAC	intron_variant intron_variant	MODIFIER	HG01891.hp2 HG02258.hp2 HG02895.hp2 others(2): Show HG01891.hp2 HG02258.hp2 HG02895.hp2 HG02922.hp1 HG03195.hp2	a0008 a0064 a0104 others(2): Show a0008 a0064 a0104 a0108 a0114	a0008c0057 a0064c0101 a0104c0145 others(2): Show a0008c0057 a0064c0101 a0104c0145 a0108c0142 a0114c0147	a0008c0057t0003 a0064c0101t0003 a0104c0145t0003 others(2): Show a0008c0057t0003 a0064c0101t0003 a0104c0145t0003 a0108c0142t0007 a0114c0147t0003	a0008c0057t0003g0089 a0064c0101t0003g0212 a0104c0145t0003g0042 others(2): Show a0008c0057t0003g0089 a0064c0101t0003g0212 a0104c0145t0003g0042 a0108c0142t0007g0205 a0114c0147t0003g0043	5	346	0.0145	42	c.330 others(59): Show c.330-1297_330-1296insGTATATATGTATATATGTGTATATATGT GCATATATGTGCAT	FREM1	ENSG00000164946.20	transcript	ENST00000380880.4	protein_coding	3/36			chr9	TogoVar
FREM1_chr9_14732152_14915428	14860780	T T	TATGCACA others(35): Show TATGCACATATATGCACATATATGCACATATATACATATATAC	intron_variant intron_variant	MODIFIER	HG03209.hp2 HG03209.hp2	a0037 a0037	a0037c0114 a0037c0114	a0037c0114t0003 a0037c0114t0003	a0037c0114t0003g0213 a0037c0114t0003g0213	1	346	0.0029	42	c.330 others(59): Show c.330-1297_330-1296insGTATATATGTATATATGTGCATATATGT GCATATATGTGCAT	FREM1	ENSG00000164946.20	transcript	ENST00000380880.4	protein_coding	3/36			chr9	TogoVar
FREM1_chr9_14732152_14915428	14860862	C C	CACATATA others(35): Show CACATATATATACGTATATATATGTATATATATACACACATAT	intron_variant intron_variant	MODIFIER	HG02976.hp1 HG02976.hp1	a0036 a0036	a0036c0135 a0036c0135	a0036c0135t0001 a0036c0135t0001	a0036c0135t0001g0184 a0036c0135t0001g0184	1	346	0.0029	42	c.330 others(59): Show c.330-1379_330-1378insATATGTGTGTATATATATACATATATAT ACGTATATATATGT	FREM1	ENSG00000164946.20	transcript	ENST00000380880.4	protein_coding	3/36			chr9	TogoVar
FREM1_chr9_14732152_14915428	14860862	C C	CACATATA others(35): Show CACATATATATACGTATATATATGTATATATATACACATATAT	intron_variant intron_variant	MODIFIER	HG02622.hp1 HG02809.hp1 HG06807.hp1 HG02622.hp1 HG02809.hp1 HG06807.hp1	a0025 a0040 a0101 a0025 a0040 a0101	a0025c0095 a0040c0136 a0101c0138 a0025c0095 a0040c0136 a0101c0138	a0025c0095t0001 a0040c0136t0001 a0101c0138t0001 a0025c0095t0001 a0040c0136t0001 a0101c0138t0001	a0025c0095t0001g0100 a0040c0136t0001g0093 a0101c0138t0001g0064 a0025c0095t0001g0100 a0040c0136t0001g0093 a0101c0138t0001g0064	3	346	0.0087	42	c.330 others(59): Show c.330-1379_330-1378insATATATGTGTATATATATACATATATAT ACGTATATATATGT	FREM1	ENSG00000164946.20	transcript	ENST00000380880.4	protein_coding	3/36			chr9	TogoVar
FRG2_chr4_190019367_190032256	190023001	T T	TTTCAGGC others(35): Show TTTCAGGCAGAAAAAAAAAGAAAGCCGCAGAAAAAGAAAAAAG	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01884.hp1 HG01884.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0002 a0001c0002t0002	a0001c0002t0002g0002 a0001c0002t0002g0002	1	400	0.0025	42	c.25 others(53): Show c.2559_*2560insCTTTTTTCTTTTTCTGCGGCTTTCTTTTTTTTTC TGCCTGAA	FRG2	ENSG00000205097.7	transcript	ENST00000504750.6	protein_coding		1365		chr4	TogoVar
FRMD4A_chr10_13638706_14335924	13679474	T T	TATATACA others(35): Show TATATACACACACACACACACACACACACACACACACACACAC	intron_variant intron_variant	MODIFIER	HG04184.hp2 HG04184.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0013 a0001c0001t0001g0013	1	134	0.0075	42	c.111 others(61): Show c.1118-4431_1118-4430insGTGTGTGTGTGTGTGTGTGTGTGTGT GTGTGTGTGTGTATAT	FRMD4A	ENSG00000151474.23	transcript	ENST00000357447.7	protein_coding	15/24			chr10	TogoVar
FRMD4A_chr10_13638706_14335924	13884176	T T	TCACTCAC others(35): Show TCACTCACACACACACACTCACACGCACACTCACACACTCACA	intron_variant intron_variant	MODIFIER	NA19007.hp2 NA19007.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0114 a0001c0001t0003g0114	1	134	0.0075	42	c.46- others(59): Show c.46-25265_46-25264insTGTGAGTGTGTGAGTGTGCGTGTGAGTG TGTGTGTGTGAGTG	FRMD4A	ENSG00000151474.23	transcript	ENST00000357447.7	protein_coding	2/24			chr10	TogoVar
FRMD5_chr15_43865764_44200271	43999928	T T	TATATATA others(35): Show TATATATATATATATGCCATGCATATATATATATATGCTATGC	intron_variant intron_variant	MODIFIER	HG01496.hp2 HG01496.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0029 a0001c0001t0001g0029	1	146	0.0069	42	c.103 others(61): Show c.103-75620_103-75619insGCATAGCATATATATATATATGCATG GCATATATATATATAT	FRMD5	ENSG00000171877.21	transcript	ENST00000417257.6	protein_coding	1/13			chr15	TogoVar
FRYL_chr4_48492357_48785279	48645124	T T	TTATATAT others(35): Show TTATATATATATATATATATATATATATATATATATATATATA	intron_variant intron_variant	MODIFIER	NA18971.hp2 NA18987.hp1 NA18999.hp2 NA18971.hp2 NA18987.hp1 NA18999.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0001 a0001c0001t0002	a0001c0001t0001g0121 a0001c0001t0001g0146 a0001c0001t0002g0259 a0001c0001t0001g0121 a0001c0001t0001g0146 a0001c0001t0002g0259	3	282	0.0106	42	c.-80 others(61): Show c.-80-10635_-80-10634insTATATATATATATATATATATATATA TATATATATATATATA	FRYL	ENSG00000075539.15	transcript	ENST00000358350.9	protein_coding	3/63			chr4	TogoVar
FSCN2_chr17_81523377_81542130	81531327	G G	GTGGTGAT others(35): Show GTGGTGATGGTGATGGTGGTGGTGGTGATGGTGGTGGTGGTGA	intron_variant intron_variant	MODIFIER	NA18955.hp1 NA18975.hp2 NA18955.hp1 NA18975.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0041 a0001c0001t0001g0041	2	432	0.0046	42	c.826 others(59): Show c.826+1975_826+1976insATGGTGATGGTGGTGGTGGTGATGGTGG TGGTGGTGATGGTG	FSCN2	ENSG00000186765.12	transcript	ENST00000417245.7	protein_coding	1/4		INFO_REALIGN_3_PRIME	chr17	TogoVar

Search by Variant

Search

Search Results (Total: 5093 hits)