Joint Open Genome and Omics Platform (JoGo)

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regionname	pos	ref	alt	annotation	impact	samples	ahapids	chapids	thapids	thapids	ac	an	af	len	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	distance	status	chr	external
LRMDA_chr10_75426624_76565168	76538546	A A	ATATATAT others(35): Show ATATATATATGTATATACATATTTATATACAGTTATATATACG	intron_variant intron_variant	MODIFIER	HG00639.hp1 HG02572.hp1 HG03098.hp2 HG00639.hp1 HG02572.hp1 HG03098.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0010 a0001c0002t0014 a0001c0002t0016 a0001c0001t0010 a0001c0002t0014 a0001c0002t0016	a0001c0001t0010g0008 a0001c0002t0014g0041 a0001c0002t0016g0043 a0001c0001t0010g0008 a0001c0002t0014g0041 a0001c0002t0016g0043	3	45	0.0667	42	c.602 others(61): Show c.602-18654_602-18653insGTATATACATATTTATATACAGTTAT ATATACGTATATATAT		LRMDA	ENSG00000148655.16	transcript	ENST00000611255.5	protein_coding	6/6					INFO_REALIGN_3_PRIME	chr10	TogoVar
LRP11_chr6_149813757_149869359	149859377	C C	CATATATA others(35): Show CATATATATATATATATATATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG03927.hp2 HG03927.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0194 a0001c0001t0001g0194	1	284	0.0035	42	c.613 others(59): Show c.613+4030_613+4031insATATATATATATATATATATATATATAT ATATATATATATAT		LRP11	ENSG00000120256.11	transcript	ENST00000239367.7	protein_coding	1/6						chr6	TogoVar
LRP12_chr8_104484236_104594258	104542994	A A	AATATAAA others(35): Show AATATAAATATATATATATATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	NA19240.hp2 NA19240.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0014 a0001c0002t0014	a0001c0002t0014g0015 a0001c0002t0014g0015	1	284	0.0035	42	c.80- others(59): Show c.80-11032_80-11031insATATATATATATATATATATATATATAT ATATATATTTATAT		LRP12	ENSG00000147650.12	transcript	ENST00000276654.10	protein_coding	1/6						chr8	TogoVar
LRP12_chr8_104484236_104594258	104548188	A A	ATAATATA others(35): Show ATAATATATTAATATTAATATACATATTAATATATAATATATT	intron_variant intron_variant	MODIFIER	HG03831.hp1 HG03831.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0042 a0001c0001t0042	a0001c0001t0042g0304 a0001c0001t0042g0304	1	313	0.0032	42	c.80- others(59): Show c.80-16226_80-16225insAATATATTATATATTAATATGTATATTA ATATTAATATATTA		LRP12	ENSG00000147650.12	transcript	ENST00000276654.10	protein_coding	1/6						chr8	TogoVar
LRP1B_chr2_140226423_142136016	141032826	C C	CATACATA others(35): Show CATACATACATACATACATATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG03516.hp2 HG03516.hp2	a0005 a0005	a0005c0009 a0005c0009	a0005c0009t0001 a0005c0009t0001	a0005c0009t0001g0007 a0005c0009t0001g0007	1	19	0.0526	42	c.179 others(63): Show c.1790-12725_1790-12724insATATATATATATATATATATATAT ATGTATGTATGTATGTAT		LRP1B	ENSG00000168702.18	transcript	ENST00000389484.8	protein_coding	11/90						chr2	TogoVar
LRRC14B_chr5_186495_201334	196679	A A	AGTGTGTC others(35): Show AGTGTGTCCCCACCCCAGGGGCCCCCATGTCACCCCACTCCAG	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00438.hp2 HG00609.hp1 HG01109.hp1 others(20): Show HG00438.hp2 HG00609.hp1 HG01109.hp1 HG01943.hp1 HG01952.hp2 HG02015.hp1 HG02040.hp1 HG02132.hp2 HG02155.hp1 HG02293.hp2 HG03654.hp1 NA18946.hp1 NA18967.hp1 NA18969.hp1 NA18980.hp2 NA18999.hp1 NA19006.hp2 NA19012.hp2 NA19056.hp1 NA19078.hp1 NA19081.hp1 NA19081.hp2 NA19086.hp2	a0001 a0008 a0001 a0008	a0001c0001 a0008c0017 a0001c0001 a0008c0017	a0001c0001t0001 a0001c0001t0003 a0001c0001t0019 others(1): Show a0001c0001t0001 a0001c0001t0003 a0001c0001t0019 a0008c0017t0003	a0001c0001t0001g0001 a0001c0001t0001g0034 a0001c0001t0003g0001 others(2): Show a0001c0001t0001g0001 a0001c0001t0001g0034 a0001c0001t0003g0001 a0001c0001t0019g0001 a0008c0017t0003g0001	23	400	0.0575	42	c.13 others(53): Show c.1326_*1327insGTGTGTCCCCACCCCAGGGGCCCCCATGTCACCC CACTCCAG		LRRC14B	ENSG00000185028.4	transcript	ENST00000328278.4	protein_coding					346		chr5	TogoVar
LRRC14_chr8_144512992_144530172	144530154	A A	ACCCGCGG others(35): Show ACCCGCGGCCAGCGGAGGGCGAGGCGGTGCCCGCGGGAACTGG	downstream_gene_variant downstream_gene_variant	MODIFIER	HG03139.hp1 HG03139.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0001 a0001c0001t0002g0001	1	412	0.0024	42	c.86 others(53): Show c.8676_*8677insCCCGCGGCCAGCGGAGGGCGAGGCGGTGCCCGCG GGAACTGG		LRRC14	ENSG00000160959.8	transcript	ENST00000292524.6	protein_coding					4983		chr8	TogoVar
LRRC18_chr10_48904480_48944840	48923496	G G	GTATATAT others(35): Show GTATATATATATATATATATATATATATATATATATATATATA	intron_variant intron_variant	MODIFIER	HG02280.hp1 NA19043.hp2 HG02280.hp1 NA19043.hp2	a0002 a0003 a0002 a0003	a0002c0006 a0003c0005 a0002c0006 a0003c0005	a0002c0006t0002 a0003c0005t0007 a0002c0006t0002 a0003c0005t0007	a0002c0006t0002g0349 a0003c0005t0007g0271 a0002c0006t0002g0349 a0003c0005t0007g0271	2	364	0.0055	42	c.-77 others(59): Show c.-77-9265_-77-9264insTATATATATATATATATATATATATATA TATATATATATATA		LRRC18	ENSG00000165383.12	transcript	ENST00000374160.8	protein_coding	2/3						chr10	TogoVar
LRRC18_chr10_48904480_48944840	48923506	A A	ATATATAT others(35): Show ATATATATATATATATATATATATATATATATATATATGTATG	intron_variant intron_variant	MODIFIER	NA20905.hp1 NA20905.hp1	a0002 a0002	a0002c0009 a0002c0009	a0002c0009t0001 a0002c0009t0001	a0002c0009t0001g0236 a0002c0009t0001g0236	1	134	0.0075	42	c.-77 others(59): Show c.-77-9275_-77-9274insCATACATATATATATATATATATATATA TATATATATATATA		LRRC18	ENSG00000165383.12	transcript	ENST00000374160.8	protein_coding	2/3						chr10	TogoVar
LRRC18_chr10_48904480_48944840	48923506	A A	ATATATAT others(35): Show ATATATATATATATATATATATATATATATATATGTATGTATG	intron_variant intron_variant	MODIFIER	HG01928.hp2 NA18949.hp2 HG01928.hp2 NA18949.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0150 a0001c0001t0001g0238 a0001c0001t0001g0150 a0001c0001t0001g0238	2	135	0.0148	42	c.-77 others(59): Show c.-77-9275_-77-9274insCATACATACATATATATATATATATATA TATATATATATATA		LRRC18	ENSG00000165383.12	transcript	ENST00000374160.8	protein_coding	2/3						chr10	TogoVar
LRRC24_chr8_144517388_144532033	144530154	A A	ACCCGCGG others(35): Show ACCCGCGGCCAGCGGAGGGCGAGGCGGTGCCCGCGGGAACTGG	upstream_gene_variant upstream_gene_variant	MODIFIER	HG03139.hp1 HG03139.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0002 a0001c0001t0001g0002	1	396	0.0025	42	c.-32 others(53): Show c.-3296_-3255dupCCAGTTCCCGCGGGCACCGCCTCGCCCTCCGCTG GCCGCGGG		LRRC24	ENSG00000254402.7	transcript	ENST00000529415.7	protein_coding					3122		chr8	TogoVar
LRRC24_chr8_144517388_144532033	144531241	A A	AGCGAGCA others(35): Show AGCGAGCAGCAGGTGGGGAGTGGGCTAGACATAGCAGGCACGG	upstream_gene_variant upstream_gene_variant	MODIFIER	NA18954.hp1 NA18986.hp1 NA19009.hp1 NA18954.hp1 NA18986.hp1 NA19009.hp1	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0001 a0002c0002t0001	a0002c0002t0001g0001 a0002c0002t0001g0001	3	382	0.0079	42	c.-43 others(53): Show c.-4342_-4341insCCGTGCCTGCTATGTCTAGCCCACTCCCCACCTG CTGCTCGC		LRRC24	ENSG00000254402.7	transcript	ENST00000529415.7	protein_coding					4209		chr8	TogoVar
LRRC24_chr8_144517388_144532033	144531359	A A	AGCGAGCA others(35): Show AGCGAGCAGCAGGTGGGGAGTGGGCTAGACATAGCAGGCACGG	upstream_gene_variant upstream_gene_variant	MODIFIER	NA18954.hp1 NA18986.hp1 NA19009.hp1 NA18954.hp1 NA18986.hp1 NA19009.hp1	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0001 a0002c0002t0001	a0002c0002t0001g0001 a0002c0002t0001g0001	3	396	0.0076	42	c.-44 others(53): Show c.-4460_-4459insCCGTGCCTGCTATGTCTAGCCCACTCCCCACCTG CTGCTCGC		LRRC24	ENSG00000254402.7	transcript	ENST00000529415.7	protein_coding					4327		chr8	TogoVar
LRRC3B_chr3_26617772_26715776	26671367	T T	TAGAGAGA others(35): Show TAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG	intron_variant intron_variant	MODIFIER	HG00735.hp2 HG02602.hp1 HG00735.hp2 HG02602.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0034 a0001c0001t0001g0276 a0001c0001t0001g0034 a0001c0001t0001g0276	2	335	0.0060	42	c.-16 others(63): Show c.-160-38145_-160-38144insGAGAGAGAGAGAGAGAGAGAGAGA GAGAGAGAGAGAGAGAGA		LRRC3B	ENSG00000179796.13	transcript	ENST00000396641.7	protein_coding	1/1					INFO_REALIGN_3_PRIME	chr3	TogoVar
LRRC3B_chr3_26617772_26715776	26671369	T T	TAGAGAGA others(35): Show TAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG	intron_variant intron_variant	MODIFIER	HG01070.hp2 HG01070.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0035 a0001c0001t0001g0035	1	288	0.0035	42	c.-16 others(63): Show c.-160-38143_-160-38142insGAGAGAGAGAGAGAGAGAGAGAGA GAGAGAGAGAGAGAGAGA		LRRC3B	ENSG00000179796.13	transcript	ENST00000396641.7	protein_coding	1/1					INFO_REALIGN_3_PRIME	chr3	TogoVar
LRRC3B_chr3_26617772_26715776	26671373	T T	TATATATA others(35): Show TATATATATATATATAGAGAGAGAGAGAGAGAGAGAGAGAGAG	intron_variant intron_variant	MODIFIER	NA21309.hp1 NA21309.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0358 a0001c0001t0003g0358	1	46	0.0217	42	c.-16 others(63): Show c.-160-38139_-160-38138insTATATATATATATAGAGAGAGAGA GAGAGAGAGAGAGAGAGA		LRRC3B	ENSG00000179796.13	transcript	ENST00000396641.7	protein_coding	1/1					INFO_REALIGN_3_PRIME	chr3	TogoVar
LRRC3B_chr3_26617772_26715776	26671373	T T	TATATATA others(35): Show TATATATATATATATATAGAGAGAGAGAGAGAGAGAGAGAGAG	intron_variant intron_variant	MODIFIER	HG03209.hp1 HG03209.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0369 a0001c0001t0001g0369	1	46	0.0217	42	c.-16 others(63): Show c.-160-38139_-160-38138insTATATATATATATATAGAGAGAGA GAGAGAGAGAGAGAGAGA		LRRC3B	ENSG00000179796.13	transcript	ENST00000396641.7	protein_coding	1/1					INFO_REALIGN_3_PRIME	chr3	TogoVar
LRRC3B_chr3_26617772_26715776	26671413	G G	GAGAGAGA others(35): Show GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAC	intron_variant intron_variant	MODIFIER	HG02523.hp1 HG02523.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0158 a0001c0001t0001g0158	1	263	0.0038	42	c.-16 others(63): Show c.-160-38099_-160-38098insGAGAGAGAGAGAGAGAGAGAGAGA GAGAGAGAGAGAGAGACA		LRRC3B	ENSG00000179796.13	transcript	ENST00000396641.7	protein_coding	1/1					INFO_REALIGN_3_PRIME	chr3	TogoVar
LRRC45_chr17_82018305_82036151	82034806	T T	TGGTCCCG others(35): Show TGGTCCCGGGATTGGAGTCACTCGGGATTGGAGGGTGCCATGA	downstream_gene_variant downstream_gene_variant	MODIFIER	HG03927.hp2 HG03927.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0001 a0001c0001t0002g0001	1	403	0.0025	42	c.40 others(53): Show c.4001_*4002insGGTCCCGGGATTGGAGTCACTCGGGATTGGAGGG TGCCATGA		LRRC45	ENSG00000169683.8	transcript	ENST00000306688.8	protein_coding					3656		chr17	TogoVar
LRRC57_chr15_42532829_42553793	42544850	A A	ATATATAT others(35): Show ATATATATATATATATATATATATATATATATATATATATATG	intron_variant intron_variant	MODIFIER	HG02257.hp1 NA20300.hp2 HG02257.hp1 NA20300.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0011 a0001c0001t0031 a0001c0001t0011 a0001c0001t0031	a0001c0001t0011g0037 a0001c0001t0031g0036 a0001c0001t0011g0037 a0001c0001t0031g0036	2	349	0.0057	42	c.678 others(57): Show c.678+226_678+227insCATATATATATATATATATATATATATATA TATATATATATA		LRRC57	ENSG00000180979.10	transcript	ENST00000397130.8	protein_coding	5/5						chr15	TogoVar
LRRC63_chr13_46206928_46282115	46255645	A A	AATATATA others(35): Show AATATATATATATATATATATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG02027.hp1 HG02027.hp1	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0002 a0002c0002t0002	a0002c0002t0002g0280 a0002c0002t0002g0280	1	148	0.0068	42	c.122 others(61): Show c.1226+5175_1226+5176insTATATATATATATATATATATATATA TATATATATATATATA		LRRC63	ENSG00000173988.14	transcript	ENST00000595396.3	protein_coding	7/9					INFO_REALIGN_3_PRIME	chr13	TogoVar
LRRC71_chr1_156915632_156938094	156928363	C C	CTCTTCTT others(35): Show CTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCT	intron_variant intron_variant	MODIFIER	HG00597.hp2 HG00609.hp2 HG02129.hp2 others(4): Show HG00597.hp2 HG00609.hp2 HG02129.hp2 HG03927.hp1 NA18943.hp2 NA18956.hp1 NA18994.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0002c0002 a0001c0001 a0002c0002	a0001c0001t0001 a0002c0002t0001 a0001c0001t0001 a0002c0002t0001	a0001c0001t0001g0001 a0002c0002t0001g0003 a0002c0002t0001g0008 others(1): Show a0001c0001t0001g0001 a0002c0002t0001g0003 a0002c0002t0001g0008 a0002c0002t0001g0030	7	61	0.1148	42	c.996 others(57): Show c.996+362_996+403dupTTCTTCTTCTTCTTCTTCTTCTTCTTCTTC TTCTTCTTCTTC		LRRC71	ENSG00000160838.14	transcript	ENST00000337428.8	protein_coding	9/14					INFO_REALIGN_3_PRIME	chr1	TogoVar
LRRC71_chr1_156915632_156938094	156928404	C C	CTTCTTCT others(35): Show CTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCTCTTA	intron_variant intron_variant	MODIFIER	NA18906.hp1 NA20129.hp2 NA18906.hp1 NA20129.hp2	a0003 a0004 a0003 a0004	a0003c0004 a0004c0005 a0003c0004 a0004c0005	a0003c0004t0001 a0004c0005t0001 a0003c0004t0001 a0004c0005t0001	a0003c0004t0001g0091 a0004c0005t0001g0097 a0003c0004t0001g0091 a0004c0005t0001g0097	2	374	0.0053	42	c.996 others(57): Show c.996+403_996+404insTTCTTCTTCTTCTTCTTCTTCTTCTTCTTC TTCCTCTTATTC		LRRC71	ENSG00000160838.14	transcript	ENST00000337428.8	protein_coding	9/14					INFO_REALIGN_3_PRIME	chr1	TogoVar
LRRC7_chr1_69562922_70149364	69718142	G G	GAAAGAAA others(35): Show GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA	intron_variant intron_variant	MODIFIER	HG01884.hp2 HG02129.hp2 HG02145.hp1 HG01884.hp2 HG02129.hp2 HG02145.hp1	a0001 a0002 a0005 a0001 a0002 a0005	a0001c0001 a0002c0015 a0005c0013 a0001c0001 a0002c0015 a0005c0013	a0001c0001t0025 a0002c0015t0008 a0005c0013t0010 a0001c0001t0025 a0002c0015t0008 a0005c0013t0010	a0001c0001t0025g0011 a0002c0015t0008g0004 a0005c0013t0010g0061 a0001c0001t0025g0011 a0002c0015t0008g0004 a0005c0013t0010g0061	3	7	0.4286	42	c.100 others(61): Show c.100+39665_100+39666insAAGAAAGAAAGAAAGAAAGAAAGAAA GAAAGAAAGAAAGAAA		LRRC7	ENSG00000033122.21	transcript	ENST00000651989.2	protein_coding	2/26					INFO_REALIGN_3_PRIME	chr1	TogoVar
LRRC7_chr1_69562922_70149364	69718142	G G	GAGAGAAA others(35): Show GAGAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA	intron_variant intron_variant	MODIFIER	HG03209.hp1 HG04115.hp1 NA18954.hp2 others(1): Show HG03209.hp1 HG04115.hp1 NA18954.hp2 NA18974.hp1	a0001 a0008 a0001 a0008	a0001c0001 a0008c0016 a0001c0001 a0008c0016	a0001c0001t0009 a0001c0001t0073 a0001c0001t0089 others(1): Show a0001c0001t0009 a0001c0001t0073 a0001c0001t0089 a0008c0016t0065	a0001c0001t0009g0072 a0001c0001t0073g0066 a0001c0001t0089g0095 others(1): Show a0001c0001t0009g0072 a0001c0001t0073g0066 a0001c0001t0089g0095 a0008c0016t0065g0052	4	8	0.5000	42	c.100 others(61): Show c.100+39667_100+39668insGAAAGAAAGAAAGAAAGAAAGAAAGA AAGAAAGAAAGAAAGA		LRRC7	ENSG00000033122.21	transcript	ENST00000651989.2	protein_coding	2/26					INFO_REALIGN_3_PRIME	chr1	TogoVar
LRRC9_chr14_59915144_60071817	59975113	G G	GTATATAT others(35): Show GTATATATATATATATGTATATATATATACATATATATATGTA	intron_variant intron_variant	MODIFIER	NA18906.hp2 NA18906.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0004 a0001c0002t0004	a0001c0002t0004g0214 a0001c0002t0004g0214	1	271	0.0037	42	c.163 others(59): Show c.1639+418_1639+419insATGTATATATATATACATATATATATGT ATATATATATATAT		LRRC9	ENSG00000131951.12	transcript	ENST00000570145.2	protein_coding	13/32					INFO_REALIGN_3_PRIME	chr14	TogoVar
LRRK1_chr15_100914357_101083257	100941356	G G	GTGTGTGC others(35): Show GTGTGTGCCTGTATCTGTGTGTGTCTGTGTCTCTGTGTGTGTC	intron_variant intron_variant	MODIFIER	NA18983.hp2 NA18990.hp2 NA19012.hp2 others(4): Show NA18983.hp2 NA18990.hp2 NA19012.hp2 NA19068.hp1 NA19068.hp2 NA19070.hp2 NA19077.hp2	a0001 a0002 a0005 others(2): Show a0001 a0002 a0005 a0009 a0029	a0001c0006 a0001c0014 a0002c0068 others(3): Show a0001c0006 a0001c0014 a0002c0068 a0005c0060 a0009c0024 a0029c0041	a0001c0006t0196 a0001c0014t0011 a0002c0068t0014 others(4): Show a0001c0006t0196 a0001c0014t0011 a0002c0068t0014 a0005c0060t0086 a0009c0024t0145 a0009c0024t0146 a0029c0041t0021	a0001c0006t0196g0334 a0001c0014t0011g0332 a0002c0068t0014g0330 others(4): Show a0001c0006t0196g0334 a0001c0014t0011g0332 a0002c0068t0014g0330 a0005c0060t0086g0333 a0009c0024t0145g0331 a0009c0024t0146g0329 a0029c0041t0021g0328	7	333	0.0210	42	c.97+ others(59): Show c.97+16633_97+16634insCCTGTATCTGTGTGTGTCTGTGTCTCTG TGTGTGTCTGTGTG		LRRK1	ENSG00000154237.13	transcript	ENST00000388948.8	protein_coding	2/33					INFO_REALIGN_3_PRIME	chr15	TogoVar
LRRK1_chr15_100914357_101083257	100941372	A A	ATCTGTGT others(35): Show ATCTGTGTGTGTCTGTGTCTCTGTGTGTGTCTGTGTGTCTATG	intron_variant intron_variant	MODIFIER	HG02280.hp2 HG02280.hp2	a0001 a0001	a0001c0066 a0001c0066	a0001c0066t0229 a0001c0066t0229	a0001c0066t0229g0076 a0001c0066t0229g0076	1	217	0.0046	42	c.97+ others(59): Show c.97+16644_97+16645insCTGTGTGTGTCTGTGTCTCTGTGTGTGT CTGTGTGTCTATGT		LRRK1	ENSG00000154237.13	transcript	ENST00000388948.8	protein_coding	2/33					INFO_REALIGN_3_PRIME	chr15	TogoVar
LRRK1_chr15_100914357_101083257	100962823	A A	ACATATAT others(35): Show ACATATATATATATATACATATATATATATATATTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG02895.hp2 HG02897.hp2 HG03139.hp2 others(1): Show HG02895.hp2 HG02897.hp2 HG03139.hp2 NA18906.hp1	a0001 a0001	a0001c0004 a0001c0034 a0001c0114 a0001c0004 a0001c0034 a0001c0114	a0001c0004t0246 a0001c0034t0095 a0001c0034t0132 others(1): Show a0001c0004t0246 a0001c0034t0095 a0001c0034t0132 a0001c0114t0216	a0001c0004t0246g0137 a0001c0034t0095g0313 a0001c0034t0132g0320 others(1): Show a0001c0004t0246g0137 a0001c0034t0095g0313 a0001c0034t0132g0320 a0001c0114t0216g0318	4	84	0.0476	42	c.98- others(59): Show c.98-10981_98-10980insCATATATATATATATACATATATATATA TATATTTTTTTTTT		LRRK1	ENSG00000154237.13	transcript	ENST00000388948.8	protein_coding	2/33						chr15	TogoVar
LRRN2_chr1_204612170_204690738	204631256	C C	CAATATAT others(35): Show CAATATATATATATATATATATATATATATATATATATATATA	intron_variant intron_variant	MODIFIER	NA18522.hp1 NA18522.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0021 a0001c0001t0001g0021	1	32	0.0313	42	c.-22 others(63): Show c.-226-11039_-226-11038insTATATATATATATATATATATATA TATATATATATATATATT		LRRN2	ENSG00000170382.12	transcript	ENST00000367177.4	protein_coding	1/1						chr1	TogoVar
LRRTM3_chr10_66921036_67106551	66978552	A A	ATAAAAAA others(35): Show ATAAAAAAAATAAAAAAAAAAAAAAATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG02129.hp2 HG02809.hp2 HG02129.hp2 HG02809.hp2	a0001 a0001	a0001c0001 a0001c0003 a0001c0001 a0001c0003	a0001c0001t0001 a0001c0003t0011 a0001c0001t0001 a0001c0003t0011	a0001c0001t0001g0086 a0001c0003t0011g0289 a0001c0001t0001g0086 a0001c0003t0011g0289	2	48	0.0417	42	c.153 others(63): Show c.1536+50100_1536+50101insTAAAAAAAATAAAAAAAAAAAAAA ATATATATATATATATAT		LRRTM3	ENSG00000198739.11	transcript	ENST00000361320.5	protein_coding	2/2						chr10	TogoVar
LRRTM4_chr2_76742685_77527376	76812673	C C	CTTTCTTT others(35): Show CTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTT	intron_variant intron_variant	MODIFIER	NA18966.hp2 NA18966.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0010 a0001c0001t0001g0010	1	33	0.0303	42	c.155 others(63): Show c.1552-63758_1552-63757insAAGAAAGAAAGAAAGAAAGAAAGA AAGAAAGAAAGAAAGAAA		LRRTM4	ENSG00000176204.14	transcript	ENST00000409884.6	protein_coding	3/3						chr2	TogoVar
LRRTM4_chr2_76742685_77527376	76812791	T T	TCCCCCTC others(35): Show TCCCCCTCCTCCTCTCCCTCCCCCCTTCCTCCTCCTCTCCCTC	intron_variant intron_variant	MODIFIER	NA18983.hp2 NA18983.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0012 a0001c0001t0002g0012	1	69	0.0145	42	c.155 others(63): Show c.1552-63876_1552-63875insGAGGGAGAGGAGGAGGAAGGGGGG AGGGAGAGGAGGAGGGGG		LRRTM4	ENSG00000176204.14	transcript	ENST00000409884.6	protein_coding	3/3						chr2	TogoVar
LRRTM4_chr2_76742685_77527376	76974187	C C	CATATATA others(35): Show CATATATATATATACATACATATATATACATATATATATACAT	intron_variant intron_variant	MODIFIER	HG02717.hp2 HG06807.hp2 NA20129.hp2 HG02717.hp2 HG06807.hp2 NA20129.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0007 a0001c0001t0001 a0001c0001t0007	a0001c0001t0001g0107 a0001c0001t0001g0123 a0001c0001t0007g0083 a0001c0001t0001g0107 a0001c0001t0001g0123 a0001c0001t0007g0083	3	118	0.0254	42	c.155 others(65): Show c.1552-225272_1552-225271insATGTATATATATATGTATATAT ATGTATGTATATATATATAT		LRRTM4	ENSG00000176204.14	transcript	ENST00000409884.6	protein_coding	3/3						chr2	TogoVar
LRRTM4_chr2_76742685_77527376	77306897	A A	ATATATAT others(35): Show ATATATATATATATATATATATATATATATATTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG03579.hp2 HG03579.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0121 a0001c0001t0002g0121	1	48	0.0208	42	c.155 others(65): Show c.1551+211420_1551+211421insAAAAAAAAAAAATATATATATA TATATATATATATATATATA		LRRTM4	ENSG00000176204.14	transcript	ENST00000409884.6	protein_coding	3/3						chr2	TogoVar
LRWD1_chr7_102459984_102478168	102467261	T T	TGGGGGGG others(35): Show TGGGGGGGGGGGGGGGGGGGTGGGGGGGGGGGGGGGGGGGGGG	intron_variant intron_variant	MODIFIER	NA18947.hp1 NA18947.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0176 a0001c0001t0001g0176	1	426	0.0023	42	c.433 others(55): Show c.433-77_433-76insGGGGGGGGGGGGGGGGGGTGGGGGGGGGGGGG GGGGGGGGGG		LRWD1	ENSG00000161036.13	transcript	ENST00000292616.10	protein_coding	3/14					INFO_REALIGN_3_PRIME	chr7	TogoVar
LSAMP_chr3_115797374_116450487	116273707	T T	TATATATA others(35): Show TATATATATATATATATATATATATATATATATATATATACAC	intron_variant intron_variant	MODIFIER	HG03195.hp1 HG03195.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0059 a0001c0001t0059	a0001c0001t0059g0104 a0001c0001t0059g0104	1	78	0.0128	42	c.155 others(63): Show c.155+171169_155+171170insGTGTATATATATATATATATATAT ATATATATATATATATAT		LSAMP	ENSG00000185565.13	transcript	ENST00000490035.7	protein_coding	1/6						chr3	TogoVar
LSG1_chr3_194635791_194677191	194645581	C C	CACACACA others(35): Show CACACACACACACACAGACAGACACACACACACACACAGACAG	intron_variant intron_variant	MODIFIER	HG00558.hp2 NA18957.hp2 NA19065.hp1 HG00558.hp2 NA18957.hp2 NA19065.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0016 a0001c0001t0035 a0001c0001t0001 a0001c0001t0016 a0001c0001t0035	a0001c0001t0001g0102 a0001c0001t0016g0103 a0001c0001t0035g0101 a0001c0001t0001g0102 a0001c0001t0016g0103 a0001c0001t0035g0101	3	389	0.0077	42	c.162 others(59): Show c.1623+582_1623+583insCTGTCTGTGTGTGTGTGTGTGTCTGTCT GTGTGTGTGTGTGT		LSG1	ENSG00000041802.11	transcript	ENST00000265245.10	protein_coding	12/13						chr3	TogoVar
LSR_chr19_35244002_35272964	35251843	C C	CTTTTTTT others(35): Show CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG01928.hp2 HG01928.hp2	a0003 a0003	a0003c0003 a0003c0003	a0003c0003t0001 a0003c0003t0001	a0003c0003t0001g0160 a0003c0003t0001g0160	1	237	0.0042	42	c.454 others(59): Show c.454+1193_454+1194insTTTTTTTTTTTTTTTTTTTTTTTTTTTT TTTTTTTTTTTTTT		LSR	ENSG00000105699.17	transcript	ENST00000605618.6	protein_coding	2/9					INFO_REALIGN_3_PRIME	chr19	TogoVar
LTBP2_chr14_74493183_74617237	74564113	A A	ATATATAT others(35): Show ATATATATTTATATATATTTATATATATATATTTATATATATT	intron_variant intron_variant	MODIFIER	HG01070.hp1 HG01071.hp1 HG01934.hp1 others(9): Show HG01070.hp1 HG01071.hp1 HG01934.hp1 HG01975.hp1 HG01978.hp1 HG02273.hp2 HG02300.hp2 NA18952.hp2 NA18973.hp1 NA19005.hp2 NA19079.hp1 NA19084.hp1	a0002 a0002	a0002c0004 a0002c0006 a0002c0007 a0002c0004 a0002c0006 a0002c0007	a0002c0004t0001 a0002c0004t0002 a0002c0004t0004 others(4): Show a0002c0004t0001 a0002c0004t0002 a0002c0004t0004 a0002c0004t0005 a0002c0004t0014 a0002c0006t0006 a0002c0007t0004	a0002c0004t0001g0081 a0002c0004t0002g0006 a0002c0004t0004g0023 others(8): Show a0002c0004t0001g0081 a0002c0004t0002g0006 a0002c0004t0004g0023 a0002c0004t0004g0029 a0002c0004t0004g0034 a0002c0004t0005g0027 a0002c0004t0014g0033 a0002c0006t0006g0037 a0002c0007t0004g0007 a0002c0007t0004g0010 a0002c0007t0004g0035	12	233	0.0515	42	c.831 others(59): Show c.831-8421_831-8420insAATATATATAAATATATATATATAAATA TATATAAATATATA		LTBP2	ENSG00000119681.12	transcript	ENST00000261978.9	protein_coding	3/35						chr14	TogoVar
LUC7L_chr16_183990_234449	186595	G G	GGAGGAAC others(35): Show GGAGGAACAGCGACACGGGGGGGGAACAGCGACACGGGAGGGA	downstream_gene_variant downstream_gene_variant	MODIFIER	NA18612.hp1 NA18612.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0335 a0001c0001t0002g0335	1	307	0.0033	42	c.26 others(53): Show c.2602_*2603insTCCCTCCCGTGTCGCTGTTCCCCCCCCGTGTCGC TGTTCCTC		LUC7L	ENSG00000007392.17	transcript	ENST00000293872.13	protein_coding					2394		chr16	TogoVar
LUC7L_chr16_183990_234449	186833	G G	GGAGGAAC others(35): Show GGAGGAACAGCGACACGGGGGGGGAACAGCGACACGGGAGGGA	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01975.hp2 HG01975.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0299 a0001c0001t0001g0299	1	307	0.0033	42	c.23 others(53): Show c.2364_*2365insTCCCTCCCGTGTCGCTGTTCCCCCCCCGTGTCGC TGTTCCTC		LUC7L	ENSG00000007392.17	transcript	ENST00000293872.13	protein_coding					2156		chr16	TogoVar
LURAP1L_chr9_12770020_12828060	12807094	A A	AATATATA others(35): Show AATATATATATATATATATATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG00609.hp2 HG01993.hp1 NA18950.hp1 others(2): Show HG00609.hp2 HG01993.hp1 NA18950.hp1 NA18971.hp2 NA19072.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0002c0002 a0001c0001 a0002c0002	a0001c0001t0001 a0001c0001t0002 a0002c0002t0001 a0001c0001t0001 a0001c0001t0002 a0002c0002t0001	a0001c0001t0001g0190 a0001c0001t0002g0098 a0001c0001t0002g0240 others(2): Show a0001c0001t0001g0190 a0001c0001t0002g0098 a0001c0001t0002g0240 a0001c0001t0002g0255 a0002c0002t0001g0346	5	196	0.0255	42	c.313 others(61): Show c.313-14268_313-14267insATATATATATATATATATATATATAT ATATATATATATATAT		LURAP1L	ENSG00000153714.6	transcript	ENST00000319264.4	protein_coding	1/1					INFO_REALIGN_3_PRIME	chr9	TogoVar
LY6E_chr8_143013529_143027409	143014904	G G	GGAGGAGG others(35): Show GGAGGAGGAGGGAGTCCTGTGTGAGGAGGAGGGAGTCCCATGT	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02280.hp1 NA18522.hp2 HG02280.hp1 NA18522.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0007 a0001c0001t0003g0007	2	285	0.0070	42	c.-37 others(53): Show c.-3740_-3739insGAGGAGGAGGGAGTCCTGTGTGAGGAGGAGGGAG TCCCATGT		LY6E	ENSG00000160932.11	transcript	ENST00000292494.11	protein_coding					3624		chr8	TogoVar
LY6H_chr8_143152916_143165321	143158329	C C	CTGTTTGG others(35): Show CTGTTTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	conservative_inframe_insertion conservative_inframe_insertion	MODERATE	NA19066.hp2 NA19066.hp2	a0002 a0002	a0002c0006 a0002c0006	a0002c0006t0001 a0002c0006t0001	a0002c0006t0001g0021 a0002c0006t0001g0021	1	442	0.0023	42	c.406 others(49): Show c.406_407insCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCA AACA	p.Gly others(54): Show p.Gly136delinsAlaProProProProProProProProProProPro ProAsnArg	LY6H	ENSG00000176956.13	transcript	ENST00000342752.9	protein_coding	4/4	528/942	406/486	136/161			chr8	TogoVar
LY75_chr2_159798355_159909756	159848093	T T	TATATATA others(35): Show TATATATATATATATACACACACACACACACACACACACACAC	intron_variant intron_variant	MODIFIER	HG02630.hp2 HG03579.hp1 NA19030.hp1 HG02630.hp2 HG03579.hp1 NA19030.hp1	a0001 a0001	a0001c0008 a0001c0008	a0001c0008t0001 a0001c0008t0001	a0001c0008t0001g0233 a0001c0008t0001g0235 a0001c0008t0001g0236 a0001c0008t0001g0233 a0001c0008t0001g0235 a0001c0008t0001g0236	3	241	0.0124	42	c.315 others(61): Show c.3150+1886_3150+1887insGTGTGTGTGTGTGTGTGTGTGTGTGT GTATATATATATATAT		LY75	ENSG00000054219.11	transcript	ENST00000263636.5	protein_coding	23/34						chr2	TogoVar
LY75_chr2_159798355_159909756	159848093	T T	TATATATA others(35): Show TATATATATATATATATACACACACACACACACACACACACAC	intron_variant intron_variant	MODIFIER	HG03225.hp2 HG03225.hp2	a0001 a0001	a0001c0008 a0001c0008	a0001c0008t0001 a0001c0008t0001	a0001c0008t0001g0130 a0001c0008t0001g0130	1	239	0.0042	42	c.315 others(61): Show c.3150+1886_3150+1887insGTGTGTGTGTGTGTGTGTGTGTGTGT ATATATATATATATAT		LY75	ENSG00000054219.11	transcript	ENST00000263636.5	protein_coding	23/34						chr2	TogoVar
LY75_chr2_159798355_159909756	159848093	T T	TATATATA others(35): Show TATATATATATATATATATATACACACACACACACACACACAC	intron_variant intron_variant	MODIFIER	HG02965.hp2 HG02965.hp2	a0013 a0013	a0013c0018 a0013c0018	a0013c0018t0001 a0013c0018t0001	a0013c0018t0001g0126 a0013c0018t0001g0126	1	239	0.0042	42	c.315 others(61): Show c.3150+1886_3150+1887insGTGTGTGTGTGTGTGTGTGTGTATAT ATATATATATATATAT		LY75	ENSG00000054219.11	transcript	ENST00000263636.5	protein_coding	23/34						chr2	TogoVar
LY86_chr6_6583720_6659982	6585671	T T	TTATATAT others(35): Show TTATATATATATATATATATATATATATATATATATATATATA	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00099.hp2 HG00408.hp2 HG02015.hp1 others(8): Show HG00099.hp2 HG00408.hp2 HG02015.hp1 HG02015.hp2 HG02135.hp1 HG02155.hp2 HG02965.hp1 NA18969.hp1 NA18972.hp2 NA18983.hp1 NA19003.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0012 a0001c0001t0001g0032 a0001c0001t0001g0113 others(8): Show a0001c0001t0001g0012 a0001c0001t0001g0032 a0001c0001t0001g0113 a0001c0001t0001g0114 a0001c0001t0001g0134 a0001c0001t0001g0151 a0001c0001t0001g0158 a0001c0001t0001g0182 a0001c0001t0001g0204 a0001c0001t0001g0246 a0001c0001t0001g0247	11	206	0.0534	42	c.-30 others(53): Show c.-3064_-3063insTATATATATATATATATATATATATATATATATA TATATATA		LY86	ENSG00000112799.9	transcript	ENST00000230568.5	protein_coding					3048		chr6	TogoVar
LYPD5_chr19_43790927_43807447	43794410	C C	CATATATA others(35): Show CATATATATATATACATACATATATATATATATATATATATAT	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02109.hp2 HG02258.hp1 HG02559.hp1 others(4): Show HG02109.hp2 HG02258.hp1 HG02559.hp1 HG03041.hp2 HG03471.hp2 NA19030.hp2 NA19043.hp2	a0002 a0008 a0002 a0008	a0002c0001 a0008c0010 a0002c0001 a0008c0010	a0002c0001t0002 a0002c0001t0006 a0008c0010t0006 a0002c0001t0002 a0002c0001t0006 a0008c0010t0006	a0002c0001t0002g0059 a0002c0001t0006g0010 a0002c0001t0006g0012 others(1): Show a0002c0001t0002g0059 a0002c0001t0006g0010 a0002c0001t0006g0012 a0008c0010t0006g0060	7	409	0.0171	42	c.31 others(53): Show c.3180_*3181insATATATATATATATATATATATATGTATGTATAT ATATATAT		LYPD5	ENSG00000159871.15	transcript	ENST00000377950.8	protein_coding					1516		chr19	TogoVar

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