Joint Open Genome and Omics Platform (JoGo)

Search by Variant

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Chr

Chromosome name (e.g., chr11).

Snpeff genename

Exact SnpEff gene name.

Sampleids

Target sampleid (e.g. HG02615).

Snpeff haplotype class

Haplotype-annotation class (e.g., ahapid, ahapid+chapid).

Snpeff annotation impact

Exact impact level (e.g., HIGH, MODERATE, LOW).

Snpeff annotation impact detail

Keyword match in SnpEff annotation.

Hapid

One or more haplotype IDs (comma-separated; e.g., a0001, a01, a0001c0001, a01c02, a1c2, a0001c0001t0005, a0001c0001t0005g0018).

Samplehapid

Sample haplotype IDs to include (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

No_hapid

Haplotype IDs to exclude (comma-separated; e.g., a0001, a0002, a0001c0001, a0001c0001t0005, a1, a01).

No_samplehapid

Sample haplotype IDs to exclude (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

Start

Start position (GRCh38).

End

End position (GRCh38).

Minac

Minimum alternate allele count (≥).

Maxac

Maximum alternate allele count (≤).

Minlen

Minimum variant length (≥).

Maxlen

Maximum variant length (≤).

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regionname	pos	ref	alt	annotation	impact	samples	ahapids	achapids	acthapids	actghapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	external
ARHGAP10_chr4_147727088_148077776	148043736	G G	GTATATAT others(35): Show GTATATATATGTATATATGTATATATATGTGTATATATATGTA	intron_variant intron_variant	MODIFIER	NA19087.hp2 NA19087.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0055 a0001c0001t0001g0055	1	106	0.0094	42	c.186 others(61): Show c.1868-3138_1868-3097dupGTATATATATGTGTATATATATGTAT ATATATATGTATATAT	ARHGAP10	ENSG00000071205.12	transcript	ENST00000336498.8	protein_coding	19/22		INFO_REALIGN_3_PRIME	chr4	TogoVar
ARHGAP17_chr16_24914389_25020369	24961911	T T	TTATATAT others(35): Show TTATATATATATATATATATATATATATATATATATATATATA	intron_variant intron_variant	MODIFIER	HG02976.hp2 HG02976.hp2	a0001 a0001	a0001c0004 a0001c0004	a0001c0004t0002 a0001c0004t0002	a0001c0004t0002g0108 a0001c0004t0002g0108	1	240	0.0042	42	c.574 others(59): Show c.574-1933_574-1932insTATATATATATATATATATATATATATA TATATATATATATA	ARHGAP17	ENSG00000140750.17	transcript	ENST00000289968.11	protein_coding	7/19			chr16	TogoVar
ARHGAP20_chr11_110572043_110717437	110687035	C C	CATATATA others(35): Show CATATATATATATATATATATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG03491.hp1 HG03491.hp1	a0003 a0003	a0003c0004 a0003c0004	a0003c0004t0002 a0003c0004t0002	a0003c0004t0002g0162 a0003c0004t0002g0162	1	226	0.0044	42	c.188 others(59): Show c.188+3511_188+3512insATATATATATATATATATATATATATAT ATATATATATATAT	ARHGAP20	ENSG00000137727.13	transcript	ENST00000683387.1	protein_coding	2/14			chr11	TogoVar
ARHGAP23_chr17_38423464_38517385	38513074	T T	TTAAATAT others(35): Show TTAAATATATATATATATATATATATATATATATATATATATA	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01255.hp1 HG01256.hp2 HG01258.hp1 others(7): Show HG01255.hp1 HG01256.hp2 HG01258.hp1 HG02135.hp1 HG02738.hp2 HG03139.hp2 HG03942.hp2 NA19004.hp2 NA19091.hp2 NA20905.hp2	a0001 a0002 a0004 others(1): Show a0001 a0002 a0004 a0013	a0001c0001 a0002c0023 a0004c0017 others(1): Show a0001c0001 a0002c0023 a0004c0017 a0013c0044	a0001c0001t0001 a0002c0023t0001 a0004c0017t0004 others(1): Show a0001c0001t0001 a0002c0023t0001 a0004c0017t0004 a0013c0044t0001	a0001c0001t0001g0006 a0001c0001t0001g0100 a0001c0001t0001g0102 others(7): Show a0001c0001t0001g0006 a0001c0001t0001g0100 a0001c0001t0001g0102 a0001c0001t0001g0133 a0001c0001t0001g0184 a0001c0001t0001g0245 a0001c0001t0001g0292 a0002c0023t0001g0239 a0004c0017t0004g0138 a0013c0044t0001g0192	10	309	0.0324	42	c.21 others(53): Show c.2102_*2103insTAAATATATATATATATATATATATATATATATA TATATATA	ARHGAP23	ENSG00000275832.5	transcript	ENST00000622683.5	protein_coding		690		chr17	TogoVar
ARHGAP23_chr17_38423464_38517385	38513074	T T	TTAAATAT others(35): Show TTAAATATATATATATATATATATATATATTTTTAAATCTGTA	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00558.hp1 HG00609.hp1 HG00621.hp1 others(19): Show HG00558.hp1 HG00609.hp1 HG00621.hp1 HG02071.hp1 HG02074.hp1 HG02132.hp1 HG02602.hp1 HG02602.hp2 HG02738.hp1 HG03669.hp2 HG03688.hp1 NA18747.hp1 NA18943.hp1 NA18943.hp2 NA18948.hp2 NA18957.hp1 NA18959.hp1 NA18963.hp2 NA18980.hp2 NA19067.hp1 NA19077.hp2 NA19240.hp1	a0001 a0019 a0001 a0019	a0001c0002 a0001c0006 a0001c0025 others(2): Show a0001c0002 a0001c0006 a0001c0025 a0001c0054 a0019c0058	a0001c0002t0002 a0001c0006t0002 a0001c0025t0002 others(2): Show a0001c0002t0002 a0001c0006t0002 a0001c0025t0002 a0001c0054t0002 a0019c0058t0002	a0001c0002t0002g0085 a0001c0002t0002g0086 a0001c0002t0002g0090 others(19): Show a0001c0002t0002g0085 a0001c0002t0002g0086 a0001c0002t0002g0090 a0001c0002t0002g0117 a0001c0002t0002g0120 a0001c0002t0002g0155 a0001c0002t0002g0229 a0001c0002t0002g0242 a0001c0002t0002g0244 a0001c0002t0002g0256 a0001c0002t0002g0306 a0001c0006t0002g0084 a0001c0006t0002g0175 a0001c0006t0002g0176 a0001c0006t0002g0177 a0001c0006t0002g0204 a0001c0006t0002g0209 a0001c0006t0002g0210 a0001c0025t0002g0183 a0001c0025t0002g0212 a0001c0054t0002g0230 a0019c0058t0002g0202	22	309	0.0712	42	c.21 others(53): Show c.2102_*2103insTAAATATATATATATATATATATATATATTTTTA AATCTGTA	ARHGAP23	ENSG00000275832.5	transcript	ENST00000622683.5	protein_coding		690		chr17	TogoVar
ARHGAP26_chr5_142765377_143234007	143012552	C C	CATACATA others(35): Show CATACATACATACATATATATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG02970.hp1 HG03098.hp1 HG03139.hp1 HG02970.hp1 HG03098.hp1 HG03139.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0006 a0001c0001t0014 a0001c0001t0048 a0001c0001t0006 a0001c0001t0014 a0001c0001t0048	a0001c0001t0006g0104 a0001c0001t0014g0041 a0001c0001t0048g0047 a0001c0001t0006g0104 a0001c0001t0014g0041 a0001c0001t0048g0047	3	198	0.0152	42	c.110 others(61): Show c.1108-1525_1108-1524insCATACATACATATATATATATATATA TATATATATATATATA	ARHGAP26	ENSG00000145819.18	transcript	ENST00000645722.2	protein_coding	11/22		INFO_REALIGN_3_PRIME	chr5	TogoVar
ARHGAP26_chr5_142765377_143234007	143012552	C C	CATACATA others(35): Show CATACATATATATATATATATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	NA18944.hp1 NA19058.hp1 NA18944.hp1 NA19058.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0003 a0001c0002t0001 a0001c0002t0003	a0001c0002t0001g0137 a0001c0002t0003g0032 a0001c0002t0001g0137 a0001c0002t0003g0032	2	198	0.0101	42	c.110 others(61): Show c.1108-1525_1108-1524insCATATATATATATATATATATATATA TATATATATATATATA	ARHGAP26	ENSG00000145819.18	transcript	ENST00000645722.2	protein_coding	11/22		INFO_REALIGN_3_PRIME	chr5	TogoVar
ARHGAP27_chr17_45388908_45437870	45431305	G G	GTCTCCGC others(35): Show GTCTCCGCAGCCCCTCCAAACTCCCACAGCTGACCACGTCGGT	intron_variant intron_variant	MODIFIER	HG03710.hp2 HG03710.hp2	a0004 a0004	a0004c0004 a0004c0004	a0004c0004t0026 a0004c0004t0026	a0004c0004t0026g0313 a0004c0004t0026g0313	1	347	0.0029	42	c.-19 others(57): Show c.-19+315_-19+316insACCGACGTGGTCAGCTGTGGGAGTTTGGAG GGGCTGCGGAGA	ARHGAP27	ENSG00000159314.13	transcript	ENST00000685559.1	protein_coding	3/19			chr17	TogoVar
ARHGAP28_chr18_6724716_6920716	6729315	T T	TGCGCGCG others(35): Show TGCGCGCGCACGCACACACAGGCGCACACACACAGACACACAG	upstream_gene_variant upstream_gene_variant	MODIFIER	HG03834.hp1 HG03834.hp1	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0002 a0002c0002t0002	a0002c0002t0002g0172 a0002c0002t0002g0172	1	248	0.0040	42	c.-50 others(51): Show c.-507_-506insGCGCGCGCACGCACACACAGGCGCACACACACAGAC ACACAG	ARHGAP28	ENSG00000088756.13	transcript	ENST00000383472.9	protein_coding		400		chr18	TogoVar
ARHGAP28_chr18_6724716_6920716	6730219	G G	GTATGTAT others(35): Show GTATGTATGTATGTATATATATATATATATATATATATATATA	intron_variant intron_variant	MODIFIER	NA18953.hp1 NA18953.hp1	a0002 a0002	a0002c0005 a0002c0005	a0002c0005t0002 a0002c0005t0002	a0002c0005t0002g0140 a0002c0005t0002g0140	1	248	0.0040	42	c.122 others(57): Show c.122+277_122+278insATGTATGTATGTATATATATATATATATAT ATATATATATAT	ARHGAP28	ENSG00000088756.13	transcript	ENST00000383472.9	protein_coding	1/17		INFO_REALIGN_3_PRIME	chr18	TogoVar
ARHGAP29_chr1_94163905_94242584	94240568	T T	TCAGTATA others(35): Show TCAGTATATCTACCATAGCAGTCCAATAGCTTAAGTTTTTCAA	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01071.hp1 HG01071.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0096 a0001c0001t0003g0096	1	356	0.0028	42	c.-32 others(53): Show c.-3228_-3187dupTTGAAAAACTTAAGCTATTGGACTGCTATGGTAG ATATACTG	ARHGAP29	ENSG00000137962.13	transcript	ENST00000260526.11	protein_coding		2985		chr1	TogoVar
ARHGAP39_chr8_144524179_144690846	144531241	A A	AGCGAGCA others(35): Show AGCGAGCAGCAGGTGGGGAGTGGGCTAGACATAGCAGGCACGG	intron_variant intron_variant	MODIFIER	NA19009.hp2 NA19009.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0059 a0001c0001t0001g0059	1	246	0.0041	42	c.298 others(59): Show c.2981-371_2981-370insCCGTGCCTGCTATGTCTAGCCCACTCCC CACCTGCTGCTCGC	ARHGAP39	ENSG00000147799.12	transcript	ENST00000377307.7	protein_coding	10/11			chr8	TogoVar
ARHGAP39_chr8_144524179_144690846	144531359	A A	AGCGAGCA others(35): Show AGCGAGCAGCAGGTGGGGAGTGGGCTAGACATAGCAGGCACGG	intron_variant intron_variant	MODIFIER	NA19009.hp2 NA19009.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0059 a0001c0001t0001g0059	1	246	0.0041	42	c.298 others(59): Show c.2981-489_2981-488insCCGTGCCTGCTATGTCTAGCCCACTCCC CACCTGCTGCTCGC	ARHGAP39	ENSG00000147799.12	transcript	ENST00000377307.7	protein_coding	10/11			chr8	TogoVar
ARHGAP6_chrX_11132544_11670920	11590862	A A	AAAAGAAA others(35): Show AAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAGGAAAG	intron_variant intron_variant	MODIFIER	HG04228.hp1 HG04228.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0017 a0001c0001t0001g0017	1	144	0.0069	42	c.588 others(61): Show c.588+73378_588+73379insCTTTCCTTCTTTTCTTTTCTTTTCTT TTCTTTTCTTTTCTTT	ARHGAP6	ENSG00000047648.23	transcript	ENST00000337414.9	protein_coding	1/12			chrX	TogoVar
ARHGEF10L_chr1_17534698_17702869	17686108	T T	TTCTTTCT others(35): Show TTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTC	intron_variant intron_variant	MODIFIER	HG03486.hp2 HG03486.hp2	a0001 a0001	a0001c0017 a0001c0017	a0001c0017t0002 a0001c0017t0002	a0001c0017t0002g0148 a0001c0017t0002g0148	1	168	0.0060	42	c.301 others(61): Show c.3010-1464_3010-1463insCTTTCTTTCTTTCTTTCTTTCTTTCT TTCTTTCTTTCTTTCT	ARHGEF10L	ENSG00000074964.17	transcript	ENST00000361221.8	protein_coding	26/28		INFO_REALIGN_3_PRIME	chr1	TogoVar
ARHGEF10_chr8_1818926_1963641	1849893	T T	TGTGGACA others(35): Show TGTGGACACAGGGCAAATGCTGAGGAGGGCGTGGGCCGGCTGC	intron_variant intron_variant	MODIFIER	HG00544.hp2 HG00544.hp2	a0019 a0019	a0019c0109 a0019c0109	a0019c0109t0044 a0019c0109t0044	a0019c0109t0044g0121 a0019c0109t0044g0121	1	363	0.0028	42	c.37+ others(57): Show c.37+6467_37+6468insGGCAAATGCTGAGGAGGGCGTGGGCCGGCT GCGTGGACACAG	ARHGEF10	ENSG00000104728.16	transcript	ENST00000349830.8	protein_coding	2/28		INFO_REALIGN_3_PRIME	chr8	TogoVar
ARHGEF10_chr8_1818926_1963641	1850251	C C	CACAGAGG others(35): Show CACAGAGGGCAAATGCTGAGGAGGGCGTGGGGCAACCGTGTGG	intron_variant intron_variant	MODIFIER	NA19080.hp2 NA19080.hp2	a0001 a0001	a0001c0006 a0001c0006	a0001c0006t0050 a0001c0006t0050	a0001c0006t0050g0094 a0001c0006t0050g0094	1	363	0.0028	42	c.37+ others(57): Show c.37+6820_37+6821insGGGCAAATGCTGAGGAGGGCGTGGGGCAAC CGTGTGGACAGA	ARHGEF10	ENSG00000104728.16	transcript	ENST00000349830.8	protein_coding	2/28		INFO_REALIGN_3_PRIME	chr8	TogoVar
ARHGEF10_chr8_1818926_1963641	1850384	G G	GGACGGCA others(35): Show GGACGGCAAATGCTGAGGAGGGCGTGGGGCAACCGTGTGGACA	intron_variant intron_variant	MODIFIER	HG02451.hp1 HG02970.hp1 HG03139.hp2 HG02451.hp1 HG02970.hp1 HG03139.hp2	a0001 a0001	a0001c0001 a0001c0005 a0001c0023 a0001c0001 a0001c0005 a0001c0023	a0001c0001t0019 a0001c0005t0027 a0001c0023t0010 a0001c0001t0019 a0001c0005t0027 a0001c0023t0010	a0001c0001t0019g0320 a0001c0005t0027g0195 a0001c0023t0010g0160 a0001c0001t0019g0320 a0001c0005t0027g0195 a0001c0023t0010g0160	3	363	0.0083	42	c.37+ others(57): Show c.37+6969_37+6970insCGTGGGGCAACCGTGTGGACAGACGGCAAA TGCTGAGGAGGG	ARHGEF10	ENSG00000104728.16	transcript	ENST00000349830.8	protein_coding	2/28		INFO_REALIGN_3_PRIME	chr8	TogoVar
ARHGEF10_chr8_1818926_1963641	1850415	A A	ACCGTGTG others(35): Show ACCGTGTGGACAGACGGCAAATGCCGAGGAGGGTGTGGGGCGG	intron_variant intron_variant	MODIFIER	HG02717.hp2 HG02717.hp2	a0012 a0012	a0012c0084 a0012c0084	a0012c0084t0003 a0012c0084t0003	a0012c0084t0003g0356 a0012c0084t0003g0356	1	363	0.0028	42	c.37+ others(57): Show c.37+6982_37+6983insTGTGGACAGACGGCAAATGCCGAGGAGGGT GTGGGGCGGCCG	ARHGEF10	ENSG00000104728.16	transcript	ENST00000349830.8	protein_coding	2/28		INFO_REALIGN_3_PRIME	chr8	TogoVar
ARHGEF10_chr8_1818926_1963641	1850428	A A	ACGGCAAA others(35): Show ACGGCAAATGCCGAGGAGGGTGTGGGGCGGCCGCGTGGGCATG	intron_variant intron_variant	MODIFIER	HG02135.hp2 NA19081.hp2 HG02135.hp2 NA19081.hp2	a0001 a0001	a0001c0008 a0001c0037 a0001c0008 a0001c0037	a0001c0008t0002 a0001c0037t0005 a0001c0008t0002 a0001c0037t0005	a0001c0008t0002g0210 a0001c0037t0005g0308 a0001c0008t0002g0210 a0001c0037t0005g0308	2	363	0.0055	42	c.37+ others(57): Show c.37+6992_37+6993insCGGCAAATGCCGAGGAGGGTGTGGGGCGGC CGCGTGGGCATG	ARHGEF10	ENSG00000104728.16	transcript	ENST00000349830.8	protein_coding	2/28			chr8	TogoVar
ARHGEF18_chr19_7343937_7477478	7367844	A A	ATATATAT others(35): Show ATATATATACACATATATATTTTATATATATACATATATATAT	intron_variant intron_variant	MODIFIER	HG02109.hp1 HG02109.hp1	a0002 a0002	a0002c0007 a0002c0007	a0002c0007t0001 a0002c0007t0001	a0002c0007t0001g0021 a0002c0007t0001g0021	1	298	0.0034	42	c.15+ others(57): Show c.15+4947_15+4948insCACATATATATTTTATATATATACATATAT ATATTATATATA	ARHGEF18	ENSG00000104880.19	transcript	ENST00000668164.2	protein_coding	2/28		INFO_REALIGN_3_PRIME	chr19	TogoVar
ARHGEF18_chr19_7343937_7477478	7367882	A A	ACACATAT others(35): Show ACACATATATATATTTTATATATATATATACACATATATATTT	intron_variant intron_variant	MODIFIER	HG00280.hp2 HG00408.hp1 HG02040.hp2 others(4): Show HG00280.hp2 HG00408.hp1 HG02040.hp2 HG02129.hp2 HG02280.hp2 HG03225.hp1 NA18954.hp2	a0001 a0006 a0007 a0001 a0006 a0007	a0001c0001 a0001c0013 a0006c0008 others(1): Show a0001c0001 a0001c0013 a0006c0008 a0007c0014	a0001c0001t0031 a0001c0013t0001 a0006c0008t0002 others(2): Show a0001c0001t0031 a0001c0013t0001 a0006c0008t0002 a0006c0008t0032 a0007c0014t0004	a0001c0001t0031g0089 a0001c0013t0001g0297 a0006c0008t0002g0281 others(4): Show a0001c0001t0031g0089 a0001c0013t0001g0297 a0006c0008t0002g0281 a0006c0008t0002g0282 a0006c0008t0002g0283 a0006c0008t0032g0284 a0007c0014t0004g0111	7	298	0.0235	42	c.16- others(57): Show c.16-4930_16-4929insCACATATATATATTTTATATATATATATAC ACATATATATTT	ARHGEF18	ENSG00000104880.19	transcript	ENST00000668164.2	protein_coding	2/28			chr19	TogoVar
ARHGEF2_chr1_155941854_155983547	155964167	A A	AAAATATA others(35): Show AAAATATATATATATATATATATATACATATATATATACATAT	intron_variant intron_variant	MODIFIER	HG02486.hp1 HG03041.hp1 HG02486.hp1 HG03041.hp1	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0001 a0002c0002t0001	a0002c0002t0001g0228 a0002c0002t0001g0229 a0002c0002t0001g0228 a0002c0002t0001g0229	2	284	0.0070	42	c.724 others(57): Show c.724+820_724+821insATATGTATATATATATGTATATATATATAT ATATATATATTT	ARHGEF2	ENSG00000116584.22	transcript	ENST00000361247.9	protein_coding	7/21			chr1	TogoVar
ARHGEF38_chr4_105547620_105685914	105561400	T T	TAGAATAG others(35): Show TAGAATAGAATAGAATGGAATGGAATAGAATAGAATAGAATAG	intron_variant intron_variant	MODIFIER	HG02922.hp1 HG02922.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0002 a0001c0002t0002	a0001c0002t0002g0153 a0001c0002t0002g0153	1	186	0.0054	42	c.196 others(59): Show c.196+8440_196+8441insGAATAGAATAGAATGGAATGGAATAGAA TAGAATAGAATAGA	ARHGEF38	ENSG00000236699.9	transcript	ENST00000420470.3	protein_coding	1/13		INFO_REALIGN_3_PRIME	chr4	TogoVar
ARHGEF6_chrX_136660550_136785932	136663429	T T	TTATATAT others(35): Show TTATATATATATATTATATATTATATATATATTATATATATTA	downstream_gene_variant downstream_gene_variant	MODIFIER	HG03209.hp1 HG03209.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0009 a0001c0001t0009	a0001c0001t0009g0064 a0001c0001t0009g0064	1	247	0.0041	42	c.45 others(53): Show c.4599_*4600insTAATATATATAATATATATATAATATATAATATA TATATATA	ARHGEF6	ENSG00000129675.16	transcript	ENST00000250617.7	protein_coding		2120		chrX	TogoVar
ARID1B_chr6_156772378_157215779	156914027	A A	ATTCCACT others(35): Show ATTCCACTCTCCACTCCCCAACTCCCAGCCCATGGTGCCCCCT	intron_variant intron_variant	MODIFIER	HG01891.hp2 HG02055.hp2 HG02145.hp1 others(5): Show HG01891.hp2 HG02055.hp2 HG02145.hp1 HG02145.hp2 HG02280.hp2 HG02976.hp2 HG03453.hp1 NA20300.hp1	a0001 a0002 a0010 a0001 a0002 a0010	a0001c0001 a0001c0008 a0002c0003 others(1): Show a0001c0001 a0001c0008 a0002c0003 a0010c0015	a0001c0001t0003 a0001c0001t0004 a0001c0008t0010 others(3): Show a0001c0001t0003 a0001c0001t0004 a0001c0008t0010 a0002c0003t0002 a0002c0003t0009 a0010c0015t0002	a0001c0001t0003g0134 a0001c0001t0004g0057 a0001c0001t0004g0150 others(5): Show a0001c0001t0003g0134 a0001c0001t0004g0057 a0001c0001t0004g0150 a0001c0008t0010g0135 a0002c0003t0002g0054 a0002c0003t0009g0010 a0002c0003t0009g0053 a0010c0015t0002g0015	8	150	0.0533	42	c.213 others(63): Show c.2136+12512_2136+12513insCACTCCCCAACTCCCAGCCCATGG TGCCCCCTTTCCACTCTC	ARID1B	ENSG00000049618.25	transcript	ENST00000636930.2	protein_coding	3/19		INFO_REALIGN_3_PRIME	chr6	TogoVar
ARID1B_chr6_156772378_157215779	156966386	C C	CTTTTCTT others(35): Show CTTTTCTTTTTTCTTTTCTTTTTTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	HG02109.hp1 HG02109.hp1	a0015 a0015	a0015c0023 a0015c0023	a0015c0023t0002 a0015c0023t0002	a0015c0023t0002g0014 a0015c0023t0002g0014	1	150	0.0067	42	c.224 others(63): Show c.2247+30814_2247+30815insCTTTTTTCTTTTCTTTTTTTTTTT TTTTTTTTTTTTTTTTTT	ARID1B	ENSG00000049618.25	transcript	ENST00000636930.2	protein_coding	4/19		INFO_REALIGN_3_PRIME	chr6	TogoVar
ARID1B_chr6_156772378_157215779	157039322	C C	CTTTTTTT others(35): Show CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	NA19043.hp2 NA19043.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0138 a0001c0001t0001g0138	1	150	0.0067	42	c.224 others(63): Show c.2248-45321_2248-45320insTTTTTTTTTTTTTTTTTTTTTTTT TTTTTTTTTTTTTTTTTT	ARID1B	ENSG00000049618.25	transcript	ENST00000636930.2	protein_coding	4/19		INFO_REALIGN_3_PRIME	chr6	TogoVar
ARID1B_chr6_156772378_157215779	157039666	C C	CTTCCTTC others(35): Show CTTCCTTCCTTCCTTCCTTCCTTCTTTCTTTCTTTCTTTTTCT	intron_variant intron_variant	MODIFIER	HG02258.hp1 HG02630.hp2 HG02258.hp1 HG02630.hp2	a0001 a0001	a0001c0001 a0001c0016 a0001c0001 a0001c0016	a0001c0001t0003 a0001c0016t0001 a0001c0001t0003 a0001c0016t0001	a0001c0001t0003g0082 a0001c0016t0001g0147 a0001c0001t0003g0082 a0001c0016t0001g0147	2	150	0.0133	42	c.224 others(63): Show c.2248-44973_2248-44972insTTTCTTTCTTTCTTTTTCTTTCCT TCCTTCCTTCCTTCCTTC	ARID1B	ENSG00000049618.25	transcript	ENST00000636930.2	protein_coding	4/19		INFO_REALIGN_3_PRIME	chr6	TogoVar
ARID1B_chr6_156772378_157215779	157161431	G G	GTGTGTGT others(35): Show GTGTGTGTGTGTGTATATATATATATATATATATATATATATA	intron_variant intron_variant	MODIFIER	HG03453.hp1 HG03453.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0004	a0001c0001t0004g0057 a0001c0001t0004g0057	1	150	0.0067	42	c.309 others(61): Show c.3090-5608_3090-5607insGTGTGTGTGTGTATATATATATATAT ATATATATATATATAT	ARID1B	ENSG00000049618.25	transcript	ENST00000636930.2	protein_coding	8/19		INFO_REALIGN_3_PRIME	chr6	TogoVar
ARID2_chr12_45724706_45913037	45899697	A A	ATATATAT others(35): Show ATATATATATGGTTATATATATATGGTTATATATATATATGGT	intron_variant intron_variant	MODIFIER	HG02451.hp1 HG02451.hp1	a0003 a0003	a0003c0004 a0003c0004	a0003c0004t0018 a0003c0004t0018	a0003c0004t0018g0205 a0003c0004t0018g0205	1	318	0.0031	42	c.536 others(61): Show c.5364-5228_5364-5227insGGTTATATATATATGGTTATATATAT ATATGGTTATATATAT	ARID2	ENSG00000189079.18	transcript	ENST00000334344.11	protein_coding	20/20		INFO_REALIGN_3_PRIME	chr12	TogoVar
ARID4A_chr14_58293555_58378876	58337242	T T	TTATATAT others(35): Show TTATATATATATATATATATATATATATATATATATATATATA	intron_variant intron_variant	MODIFIER	HG01109.hp2 HG02015.hp2 HG01109.hp2 HG02015.hp2	a0001 a0001	a0001c0001 a0001c0003 a0001c0001 a0001c0003	a0001c0001t0009 a0001c0003t0002 a0001c0001t0009 a0001c0003t0002	a0001c0001t0009g0065 a0001c0003t0002g0161 a0001c0001t0009g0065 a0001c0003t0002g0161	2	294	0.0068	42	c.906 others(59): Show c.906+7076_906+7077insATATATATATATATATATATATATATAT ATATATATATATAT	ARID4A	ENSG00000032219.19	transcript	ENST00000355431.8	protein_coding	11/23		INFO_REALIGN_3_PRIME	chr14	TogoVar
ARID4A_chr14_58293555_58378876	58337246	T T	TTATATAT others(35): Show TTATATATATATATATATATATATATATATATATATATATATA	intron_variant intron_variant	MODIFIER	NA18969.hp2 NA18969.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0125 a0001c0001t0001g0125	1	294	0.0034	42	c.906 others(59): Show c.906+7099_906+7100insTATATATATATATATATATATATATATA TATATATATATATA	ARID4A	ENSG00000032219.19	transcript	ENST00000355431.8	protein_coding	11/23		INFO_REALIGN_3_PRIME	chr14	TogoVar
ARID4B_chr1_235161902_235333179	235296842	G G	GGAGGAAG others(35): Show GGAGGAAGGGAGGAAGGGAGAGAAAGAGGGAGGGAGGGAGGGA	intron_variant intron_variant	MODIFIER	HG00597.hp2 HG00639.hp1 HG00642.hp2 others(35): Show HG00597.hp2 HG00639.hp1 HG00642.hp2 HG00738.hp2 HG01069.hp2 HG01106.hp1 HG01168.hp2 HG01256.hp2 HG01257.hp1 HG01258.hp1 HG01346.hp2 HG01433.hp1 HG01516.hp1 HG01884.hp2 HG01981.hp2 HG02083.hp2 HG02135.hp1 HG02258.hp1 HG02559.hp1 HG02717.hp2 HG02809.hp1 HG02809.hp2 HG02922.hp1 HG03130.hp1 HG03471.hp2 HG03654.hp2 HG03710.hp2 HG04199.hp1 NA18946.hp2 NA18947.hp2 NA18953.hp1 NA18954.hp2 NA18973.hp1 NA18982.hp1 NA18999.hp1 NA19056.hp1 NA19079.hp1 NA20805.hp2	a0001 a0003 a0001 a0003	a0001c0001 a0001c0002 a0001c0008 others(3): Show a0001c0001 a0001c0002 a0001c0008 a0001c0012 a0001c0019 a0003c0005	a0001c0001t0001 a0001c0002t0001 a0001c0008t0001 others(3): Show a0001c0001t0001 a0001c0002t0001 a0001c0008t0001 a0001c0012t0006 a0001c0019t0001 a0003c0005t0001	a0001c0001t0001g0140 a0001c0001t0001g0142 a0001c0001t0001g0143 others(35): Show a0001c0001t0001g0140 a0001c0001t0001g0142 a0001c0001t0001g0143 a0001c0001t0001g0144 a0001c0001t0001g0148 a0001c0001t0001g0149 a0001c0001t0001g0156 a0001c0001t0001g0159 a0001c0001t0001g0160 a0001c0001t0001g0169 a0001c0001t0001g0175 a0001c0001t0001g0178 a0001c0001t0001g0179 a0001c0001t0001g0180 a0001c0001t0001g0181 a0001c0001t0001g0182 a0001c0001t0001g0185 a0001c0001t0001g0186 a0001c0001t0001g0188 a0001c0001t0001g0189 a0001c0001t0001g0196 a0001c0001t0001g0210 a0001c0001t0001g0230 a0001c0001t0001g0231 a0001c0001t0001g0234 a0001c0001t0001g0237 a0001c0001t0001g0243 a0001c0001t0001g0246 a0001c0001t0001g0249 a0001c0001t0001g0266 a0001c0001t0001g0268 a0001c0001t0001g0269 a0001c0002t0001g0136 a0001c0008t0001g0271 a0001c0012t0006g0272 a0001c0019t0001g0167 a0003c0005t0001g0003 a0003c0005t0001g0007	38	272	0.1397	42	c.6+3 others(57): Show c.6+30071_6+30072insTCCCTCCCTCCCTCCCTCTTTCTCTCCCTT CCTCCCTTCCTC	ARID4B	ENSG00000054267.22	transcript	ENST00000264183.9	protein_coding	2/23			chr1	TogoVar
ARID4B_chr1_235161902_235333179	235296843	A A	AAGGGAGG others(35): Show AAGGGAGGAAGGGAGAGAAAGAGGGAGGGAGGGAGGGAGGGAG	intron_variant intron_variant	MODIFIER	HG02559.hp2 HG02559.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0021 a0001c0002t0001g0021	1	272	0.0037	42	c.6+3 others(57): Show c.6+30070_6+30071insCTCCCTCCCTCCCTCCCTCCCTCTTTCTCT CCCTTCCTCCCT	ARID4B	ENSG00000054267.22	transcript	ENST00000264183.9	protein_coding	2/23			chr1	TogoVar
ARIH1_chr15_72469330_72607987	72513789	C C	CCCCCCTC others(35): Show CCCCCCTCCCTCCTTCCCTCCCTCCCTCCCCCTCTCCCTCCCT	intron_variant intron_variant	MODIFIER	HG01257.hp1 HG01257.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0154 a0001c0001t0001g0154	1	262	0.0038	42	c.376 others(59): Show c.376-4274_376-4273insCTCCCTCCTTCCCTCCCTCCCTCCCCCT CTCCCTCCCTCCCC	ARIH1	ENSG00000166233.15	transcript	ENST00000379887.9	protein_coding	1/13		INFO_REALIGN_3_PRIME	chr15	TogoVar
ARK2N_chr18_46169034_46271992	46259885	C C	CTGTGTGT others(35): Show CTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG	intron_variant intron_variant	MODIFIER	NA18995.hp2 NA18995.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0004	a0001c0001t0004g0040 a0001c0001t0004g0040	1	320	0.0031	42	c.102 others(61): Show c.1026-3030_1026-3029insTGTGTGTGTGTGTGTGTGTGTGTGTG TGTGTGTGTGTGTGTG	ARK2N	ENSG00000152242.11	transcript	ENST00000615052.5	protein_coding	4/4		INFO_REALIGN_3_PRIME	chr18	TogoVar
ARL14EP_chr11_30318104_30343223	30334208	C C	CTTTTTTT others(35): Show CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	intron_variant intron_variant	MODIFIER	NA18972.hp2 NA18972.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0072 a0001c0001t0001g0072	1	400	0.0025	42	c.554 others(59): Show c.554+1240_554+1241insTTTTTTTTTTTTTTTTTTTTTTTTTTTT TTTTTTTTTTTTTT	ARL14EP	ENSG00000152219.5	transcript	ENST00000282032.4	protein_coding	3/3		INFO_REALIGN_3_PRIME	chr11	TogoVar
ARL15_chr5_53878942_54315573	54125063	G G	GTTTTTTT others(35): Show GTTTTTTTTGTTTTTTTTTTTTTTTTTTTTTTTTGTTTTTTTT	intron_variant intron_variant	MODIFIER	HG03225.hp2 HG03225.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0007 a0001c0001t0007	a0001c0001t0007g0188 a0001c0001t0007g0188	1	206	0.0049	42	c.254 others(61): Show c.254-11654_254-11653insAAAAAAAACAAAAAAAAAAAAAAAAA AAAAAAACAAAAAAAA	ARL15	ENSG00000185305.12	transcript	ENST00000504924.6	protein_coding	3/4			chr5	TogoVar
ARL5C_chr17_39151894_39171161	39163345	C C	CCTTTCTT others(35): Show CCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTTTCTTT	intron_variant intron_variant	MODIFIER	HG00558.hp2 NA18939.hp2 NA18950.hp1 others(1): Show HG00558.hp2 NA18939.hp2 NA18950.hp1 NA18979.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0002 a0002c0002t0002	a0002c0002t0002g0332 a0002c0002t0002g0333 a0002c0002t0002g0334 others(1): Show a0002c0002t0002g0332 a0002c0002t0002g0333 a0002c0002t0002g0334 a0002c0002t0002g0335	4	410	0.0098	42	c.108 others(57): Show c.108-488_108-487insAAAGAAAAAGAAAGAAAGAAAGAAAGAAAG AAAGAAAGAAAG	ARL5C	ENSG00000141748.13	transcript	ENST00000269586.12	protein_coding	2/5			chr17	TogoVar
ARL6IP5_chr3_69079937_69111092	69110853	A A	AAAAAAAA others(35): Show AAAAAAAAAAAAAAAAAAAATATATATATATATATATATATAT	downstream_gene_variant downstream_gene_variant	MODIFIER	NA18945.hp2 NA18945.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0002 a0001c0002t0002	a0001c0002t0002g0018 a0001c0002t0002g0018	1	434	0.0023	42	c.62 others(53): Show c.6217_*6218insAAAAAAAAAAAAAAAAAAATATATATATATATAT ATATATAT	ARL6IP5	ENSG00000144746.7	transcript	ENST00000273258.4	protein_coding		4762		chr3	TogoVar
ARMC10_chr7_103070140_103104759	103099575	C C	CGTGTGTG others(35): Show CGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG00438.hp2 HG00558.hp1 HG01070.hp1 others(10): Show HG00438.hp2 HG00558.hp1 HG01070.hp1 HG01175.hp2 HG01891.hp1 HG01993.hp1 HG02083.hp2 HG02155.hp2 HG03491.hp1 HG03579.hp2 HG04184.hp1 HG06807.hp1 NA19089.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0017 a0001c0001t0023 a0001c0001t0053 others(1): Show a0001c0001t0017 a0001c0001t0023 a0001c0001t0053 a0001c0001t0060	a0001c0001t0017g0001 a0001c0001t0017g0044 a0001c0001t0017g0045 others(7): Show a0001c0001t0017g0001 a0001c0001t0017g0044 a0001c0001t0017g0045 a0001c0001t0017g0081 a0001c0001t0023g0005 a0001c0001t0023g0107 a0001c0001t0023g0115 a0001c0001t0023g0130 a0001c0001t0053g0075 a0001c0001t0060g0043	13	390	0.0333	42	c.10 others(53): Show c.1040_*1041insGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT GTGTGTGT	ARMC10	ENSG00000170632.14	transcript	ENST00000323716.8	protein_coding	7/7	1041	INFO_REALIGN_3_PRIME	chr7	TogoVar
ARMH3_chr10_101840599_102061173	101935174	A A	AATATATA others(35): Show AATATATATATATATATATATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG01069.hp1 NA18965.hp2 HG01069.hp1 NA18965.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0046 a0001c0001t0001g0072 a0001c0001t0001g0046 a0001c0001t0001g0072	2	262	0.0076	42	c.178 others(61): Show c.1781+4688_1781+4689insATATATATATATATATATATATATAT ATATATATATATATAT	ARMH3	ENSG00000120029.13	transcript	ENST00000370033.9	protein_coding	23/25			chr10	TogoVar
ARPC2_chr2_218212189_218259348	218215618	T T	TAAAAAAA others(35): Show TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02451.hp1 HG02451.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0192 a0001c0001t0001g0192	1	332	0.0030	42	c.-16 others(53): Show c.-1645_-1644insAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAA	ARPC2	ENSG00000163466.16	transcript	ENST00000315717.10	protein_coding		1570		chr2	TogoVar
ARPC3_chr12_110429823_110455337	110432172	T T	TATCTCTA others(35): Show TATCTCTAGATCTAGAGATAGATCTATATATCTAGATATATAG	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02145.hp2 HG02145.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0180 a0001c0001t0001g0180	1	334	0.0030	42	c.29 others(53): Show c.2982_*2983insCTATATATCTAGATATATAGATCTATCTCTAGAT CTAGAGAT	ARPC3	ENSG00000111229.16	transcript	ENST00000228825.12	protein_coding		2650		chr12	TogoVar
ARPP21_chr3_35634525_35799486	35667885	A A	AGAAGAAG others(35): Show AGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGGAAGAG	intron_variant intron_variant	MODIFIER	HG02922.hp1 HG02922.hp1	a0002 a0002	a0002c0011 a0002c0011	a0002c0011t0001 a0002c0011t0001	a0002c0011t0001g0211 a0002c0011t0001g0211	1	266	0.0038	42	c.-21 others(63): Show c.-212-11897_-212-11896insAGAAGAAGAAGAAGAAGAAGAAGA AGAAGAGGAAGAGGAAGA	ARPP21	ENSG00000172995.17	transcript	ENST00000684406.1	protein_coding	1/20		INFO_REALIGN_3_PRIME	chr3	TogoVar
ASAP1_chr8_130047104_130448674	130049256	A A	AGGGGAAC others(35): Show AGGGGAACACATGGAGGGCAGAGGGGAACACATGGGGGCAGAG	downstream_gene_variant downstream_gene_variant	MODIFIER	HG03239.hp1 HG03239.hp1	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0005 a0002c0002t0005	a0002c0002t0005g0291 a0002c0002t0005g0291	1	308	0.0033	42	c.54 others(53): Show c.5474_*5475insCTCTGCCCCCATGTGTTCCCCTCTGCCCTCCATG TGTTCCCC	ASAP1	ENSG00000153317.15	transcript	ENST00000518721.6	protein_coding		2847		chr8	TogoVar
ASAP1_chr8_130047104_130448674	130049290	G G	GAGGGCAG others(35): Show GAGGGCAGAGGGGAACACATGGGGGCAGAGGGGAACACATGGA	downstream_gene_variant downstream_gene_variant	MODIFIER	NA18966.hp1 NA18966.hp1	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0002 a0002c0002t0002	a0002c0002t0002g0265 a0002c0002t0002g0265	1	308	0.0033	42	c.54 others(53): Show c.5440_*5441insTCCATGTGTTCCCCTCTGCCCCCATGTGTTCCCC TCTGCCCT	ASAP1	ENSG00000153317.15	transcript	ENST00000518721.6	protein_coding		2813		chr8	TogoVar
ASAP1_chr8_130047104_130448674	130049487	G G	GGAACACA others(35): Show GGAACACATGGGGGGCAGAGGAGAACACATGGGGGGCAGAGGA	downstream_gene_variant downstream_gene_variant	MODIFIER	NA19087.hp2 NA19087.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0002 a0002c0002t0002	a0002c0002t0002g0270 a0002c0002t0002g0270	1	308	0.0033	42	c.52 others(53): Show c.5243_*5244insTCCTCTGCCCCCCATGTGTTCTCCTCTGCCCCCC ATGTGTTC	ASAP1	ENSG00000153317.15	transcript	ENST00000518721.6	protein_coding		2616		chr8	TogoVar
ASAP1_chr8_130047104_130448674	130049714	G G	GGAATACA others(35): Show GGAATACATGGGGGGCAGAGGAGAACACATGGGGGGCAGAGGA	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02922.hp2 HG02922.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0006 a0002c0002t0006	a0002c0002t0006g0304 a0002c0002t0006g0304	1	308	0.0033	42	c.50 others(53): Show c.5016_*5017insTCCTCTGCCCCCCATGTGTTCTCCTCTGCCCCCC ATGTATTC	ASAP1	ENSG00000153317.15	transcript	ENST00000518721.6	protein_coding		2389		chr8	TogoVar

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