Joint Open Genome and Omics Platform (JoGo)

Search by Variant

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Chr

Chromosome name (e.g., chr11).

Snpeff genename

Exact SnpEff gene name.

Sampleids

Target sampleid (e.g. HG02615).

Snpeff haplotype class

Haplotype-annotation class (e.g., ahapid, ahapid+chapid).

Snpeff annotation impact

Exact impact level (e.g., HIGH, MODERATE, LOW).

Snpeff annotation impact detail

Keyword match in SnpEff annotation.

Hapid

One or more haplotype IDs (comma-separated; e.g., a0001, a01, a0001c0001, a01c02, a1c2, a0001c0001t0005, a0001c0001t0005g0018).

Samplehapid

Sample haplotype IDs to include (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

No_hapid

Haplotype IDs to exclude (comma-separated; e.g., a0001, a0002, a0001c0001, a0001c0001t0005, a1, a01).

No_samplehapid

Sample haplotype IDs to exclude (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

Start

Start position (GRCh38).

End

End position (GRCh38).

Minac

Minimum alternate allele count (≥).

Maxac

Maximum alternate allele count (≤).

Minlen

Minimum variant length (≥).

Maxlen

Maximum variant length (≤).

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regionname	pos	ref	alt	annotation	impact	samples	ahapids	achapids	acthapids	actghapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	external
FLRT2_chr14_85525144_85659428	85643354	T T	TTTCTTTC others(37): Show TTTCTTTCTTTCTTTCTTTCTTTTCCTTCCTTCCTTCCTTCCTTC	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG02074.hp1 HG02698.hp1 HG04115.hp2 HG02074.hp1 HG02698.hp1 HG04115.hp2	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0255 a0001c0003t0258 a0001c0003t0259 a0001c0003t0255 a0001c0003t0258 a0001c0003t0259	a0001c0003t0255g0302 a0001c0003t0258g0155 a0001c0003t0259g0024 a0001c0003t0255g0302 a0001c0003t0258g0155 a0001c0003t0259g0024	3	338	0.0089	44	c.19 others(57): Show c.19857_*19858insTTCTTTCTTTCTTTCTTTCTTTTCCTTCCTTC CTTCCTTCCTTC	FLRT2	ENSG00000185070.12	transcript	ENST00000330753.6	protein_coding	2/2	19858		chr14	TogoVar
FLT3_chr13_27998274_28105576	27998855	T T	TAAATATA others(37): Show TAAATATATATATTTATATACATATAAATATATATATTTATATAC	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02922.hp2 HG02922.hp2	a0015 a0015	a0015c0023 a0015c0023	a0015c0023t0004 a0015c0023t0004	a0015c0023t0004g0038 a0015c0023t0004g0038	1	292	0.0034	44	c.51 others(55): Show c.5196_*5197insGTATATAAATATATATATTTATATGTATATAAAT ATATATATTT	FLT3	ENSG00000122025.15	transcript	ENST00000241453.12	protein_coding		4418		chr13	TogoVar
FLT3_chr13_27998274_28105576	27998892	T T	TATATATA others(37): Show TATATATATTTATATGCATATAAATATATATTTATATGCATATAA	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00140.hp2 HG00609.hp1 HG02015.hp2 others(25): Show HG00140.hp2 HG00609.hp1 HG02015.hp2 HG02074.hp1 HG02080.hp2 HG02155.hp1 HG02280.hp1 HG02602.hp2 HG03669.hp1 HG03710.hp1 HG03710.hp2 HG06807.hp1 NA18953.hp1 NA18953.hp2 NA18961.hp2 NA18966.hp2 NA18971.hp1 NA18982.hp1 NA18994.hp2 NA19002.hp2 NA19004.hp1 NA19010.hp2 NA19064.hp1 NA19066.hp1 NA19074.hp2 NA19081.hp1 NA19081.hp2 NA19091.hp1	a0001 a0002 a0003 others(3): Show a0001 a0002 a0003 a0004 a0005 a0014	a0001c0001 a0001c0004 a0002c0002 others(6): Show a0001c0001 a0001c0004 a0002c0002 a0003c0003 a0003c0010 a0004c0005 a0004c0006 a0005c0007 a0014c0028	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(9): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0004t0002 a0002c0002t0002 a0003c0003t0002 a0003c0010t0001 a0003c0010t0002 a0004c0005t0002 a0004c0006t0002 a0005c0007t0002 a0014c0028t0002	a0001c0001t0001g0052 a0001c0001t0002g0009 a0001c0001t0002g0028 others(25): Show a0001c0001t0001g0052 a0001c0001t0002g0009 a0001c0001t0002g0028 a0001c0001t0002g0030 a0001c0001t0002g0031 a0001c0001t0002g0049 a0001c0001t0002g0056 a0001c0001t0002g0058 a0001c0001t0002g0060 a0001c0001t0002g0073 a0001c0001t0002g0142 a0001c0001t0002g0164 a0001c0001t0003g0048 a0001c0004t0002g0027 a0001c0004t0002g0105 a0001c0004t0002g0132 a0001c0004t0002g0149 a0002c0002t0002g0074 a0002c0002t0002g0118 a0002c0002t0002g0177 a0003c0003t0002g0218 a0003c0003t0002g0253 a0003c0010t0001g0268 a0003c0010t0002g0262 a0004c0005t0002g0243 a0004c0006t0002g0234 a0005c0007t0002g0186 a0014c0028t0002g0069	28	292	0.0959	44	c.51 others(55): Show c.5159_*5160insTTATATGCATATAAATATATATTTATATGCATAT AAATATATAT	FLT3	ENSG00000122025.15	transcript	ENST00000241453.12	protein_coding		4381		chr13	TogoVar
FLT3_chr13_27998274_28105576	27998892	T T	TATATATA others(37): Show TATATATATTTATATGCATATAAATATATATTTATATGCATATAC	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01106.hp2 HG01106.hp2	a0019 a0019	a0019c0045 a0019c0045	a0019c0045t0001 a0019c0045t0001	a0019c0045t0001g0220 a0019c0045t0001g0220	1	292	0.0034	44	c.51 others(55): Show c.5159_*5160insGTATATGCATATAAATATATATTTATATGCATAT AAATATATAT	FLT3	ENSG00000122025.15	transcript	ENST00000241453.12	protein_coding		4381		chr13	TogoVar
FLT3_chr13_27998274_28105576	27998923	T T	TTATATGC others(37): Show TTATATGCATATAAATATATATGTATATGCATATAAATATATATG	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02615.hp1 HG02615.hp1	a0003 a0003	a0003c0003 a0003c0003	a0003c0003t0001 a0003c0003t0001	a0003c0003t0001g0196 a0003c0003t0001g0196	1	292	0.0034	44	c.51 others(55): Show c.5128_*5129insCATATATATTTATATGCATATACATATATATTTA TATGCATATA	FLT3	ENSG00000122025.15	transcript	ENST00000241453.12	protein_coding		4350		chr13	TogoVar
FLT3_chr13_27998274_28105576	27998923	T T	TTATATGC others(37): Show TTATATGCATATAAATATATATTTATATGCATATAAATATATATG	downstream_gene_variant downstream_gene_variant	MODIFIER	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0094 a0001c0001t0003g0094	1	292	0.0034	44	c.51 others(55): Show c.5128_*5129insCATATATATTTATATGCATATAAATATATATTTA TATGCATATA	FLT3	ENSG00000122025.15	transcript	ENST00000241453.12	protein_coding		4350		chr13	TogoVar
FLT3_chr13_27998274_28105576	27998945	T T	TTATATGC others(37): Show TTATATGCATATAAATATATATTTATATGCATATAAATATATATG	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02602.hp1 NA18991.hp2 NA20905.hp1 HG02602.hp1 NA18991.hp2 NA20905.hp1	a0001 a0003 a0004 a0001 a0003 a0004	a0001c0001 a0003c0003 a0004c0005 a0001c0001 a0003c0003 a0004c0005	a0001c0001t0002 a0003c0003t0002 a0004c0005t0002 a0001c0001t0002 a0003c0003t0002 a0004c0005t0002	a0001c0001t0002g0075 a0003c0003t0002g0199 a0004c0005t0002g0264 a0001c0001t0002g0075 a0003c0003t0002g0199 a0004c0005t0002g0264	3	292	0.0103	44	c.51 others(55): Show c.5106_*5107insCATATATATTTATATGCATATAAATATATATTTA TATGCATATA	FLT3	ENSG00000122025.15	transcript	ENST00000241453.12	protein_coding		4328		chr13	TogoVar
FLT3_chr13_27998274_28105576	27999158	A A	ATAAATAT others(37): Show ATAAATATATATATGTATATAAATATATATATTTATATTTATATG	downstream_gene_variant downstream_gene_variant	MODIFIER	NA19009.hp2 NA19063.hp1 NA19009.hp2 NA19063.hp1	a0001 a0001	a0001c0004 a0001c0004	a0001c0004t0001 a0001c0004t0001	a0001c0004t0001g0010 a0001c0004t0001g0043 a0001c0004t0001g0010 a0001c0004t0001g0043	2	292	0.0069	44	c.48 others(55): Show c.4893_*4894insCATATAAATATAAATATATATATTTATATACATA TATATATTTA	FLT3	ENSG00000122025.15	transcript	ENST00000241453.12	protein_coding		4115		chr13	TogoVar
FLT4_chr5_180596506_180654600	180615292	G G	GGGTCCCG others(37): Show GGGTCCCGCTGGTCACCTCCCTTCTCCACTTCCTTTCGGAGCACT	intron_variant intron_variant	MODIFIER	HG00609.hp2 HG00639.hp1 HG00642.hp2 others(40): Show HG00609.hp2 HG00639.hp1 HG00642.hp2 HG00733.hp2 HG00738.hp2 HG01070.hp2 HG01071.hp1 HG01074.hp2 HG01109.hp1 HG01167.hp1 HG01167.hp2 HG01169.hp1 HG01192.hp1 HG01255.hp1 HG01257.hp1 HG01258.hp1 HG01515.hp2 HG02015.hp2 HG02083.hp1 HG02109.hp1 HG02145.hp2 HG02683.hp1 HG02809.hp2 HG02895.hp2 HG02897.hp2 HG03139.hp2 HG03209.hp1 HG03453.hp2 HG03471.hp1 HG03654.hp1 HG03669.hp1 HG03942.hp2 NA18612.hp1 NA18906.hp1 NA18950.hp1 NA18961.hp1 NA18975.hp1 NA18992.hp2 NA19057.hp2 NA19067.hp1 NA19070.hp1 NA20752.hp1 NA20905.hp1	a0001 a0002 a0006 others(3): Show a0001 a0002 a0006 a0013 a0021 a0024	a0001c0023 a0002c0002 a0002c0035 others(5): Show a0001c0023 a0002c0002 a0002c0035 a0006c0014 a0006c0033 a0013c0019 a0021c0034 a0024c0046	a0001c0023t0008 a0002c0002t0001 a0002c0002t0005 others(8): Show a0001c0023t0008 a0002c0002t0001 a0002c0002t0005 a0002c0002t0013 a0002c0035t0001 a0006c0014t0002 a0006c0014t0009 a0006c0033t0009 a0013c0019t0008 a0021c0034t0009 a0024c0046t0009	a0001c0023t0008g0377 a0001c0023t0008g0378 a0002c0002t0001g0002 others(39): Show a0001c0023t0008g0377 a0001c0023t0008g0378 a0002c0002t0001g0002 a0002c0002t0001g0011 a0002c0002t0001g0061 a0002c0002t0001g0081 a0002c0002t0001g0084 a0002c0002t0001g0089 a0002c0002t0001g0097 a0002c0002t0001g0115 a0002c0002t0001g0201 a0002c0002t0001g0202 a0002c0002t0001g0205 a0002c0002t0001g0211 a0002c0002t0001g0251 a0002c0002t0001g0254 a0002c0002t0001g0256 a0002c0002t0001g0337 a0002c0002t0001g0339 a0002c0002t0001g0341 a0002c0002t0001g0342 a0002c0002t0001g0345 a0002c0002t0001g0346 a0002c0002t0001g0347 a0002c0002t0001g0348 a0002c0002t0001g0349 a0002c0002t0001g0351 a0002c0002t0001g0352 a0002c0002t0001g0353 a0002c0002t0001g0354 a0002c0002t0001g0355 a0002c0002t0005g0340 a0002c0002t0013g0165 a0002c0035t0001g0221 a0006c0014t0002g0374 a0006c0014t0009g0301 a0006c0014t0009g0302 a0006c0033t0009g0376 a0013c0019t0008g0059 a0013c0019t0008g0060 a0021c0034t0009g0287 a0024c0046t0009g0327	43	388	0.1108	44	c.321 others(63): Show c.3219+1074_3219+1075insAGTGCTCCGAAAGGAAGTGGAGAAGG GAGGTGACCAGCGGGACC	FLT4	ENSG00000037280.16	transcript	ENST00000261937.11	protein_coding	23/29			chr5	TogoVar
FLT4_chr5_180596506_180654600	180615340	C C	CCCGCCGG others(37): Show CCCGCCGGTCACCTCCCTTCTCCACTTCCTTTCGGAGCACTGGTG	intron_variant intron_variant	MODIFIER	HG01175.hp2 HG01346.hp2 HG01433.hp1 others(7): Show HG01175.hp2 HG01346.hp2 HG01433.hp1 HG01516.hp1 HG01928.hp2 HG02300.hp2 HG03239.hp2 HG03491.hp2 HG04184.hp2 HG04199.hp1	a0001 a0002 a0010 others(2): Show a0001 a0002 a0010 a0018 a0028	a0001c0009 a0002c0002 a0010c0021 others(2): Show a0001c0009 a0002c0002 a0010c0021 a0018c0039 a0028c0048	a0001c0009t0001 a0002c0002t0001 a0010c0021t0001 others(2): Show a0001c0009t0001 a0002c0002t0001 a0010c0021t0001 a0018c0039t0001 a0028c0048t0001	a0001c0009t0001g0019 a0001c0009t0001g0063 a0002c0002t0001g0016 others(7): Show a0001c0009t0001g0019 a0001c0009t0001g0063 a0002c0002t0001g0016 a0002c0002t0001g0018 a0002c0002t0001g0125 a0002c0002t0001g0331 a0010c0021t0001g0029 a0010c0021t0001g0326 a0018c0039t0001g0040 a0028c0048t0001g0219	10	388	0.0258	44	c.321 others(63): Show c.3219+1026_3219+1027insCACCAGTGCTCCGAAAGGAAGTGGAG AAGGGAGGTGACCGGCGG	FLT4	ENSG00000037280.16	transcript	ENST00000261937.11	protein_coding	23/29			chr5	TogoVar
FLT4_chr5_180596506_180654600	180615783	C C	CGCCGGTC others(37): Show CGCCGGTCACCTCCCTTCTCCACTTCCTTTCGGAGCACTGGGCCT	intron_variant intron_variant	MODIFIER	HG02258.hp2 HG02258.hp2	a0011 a0011	a0011c0016 a0011c0016	a0011c0016t0011 a0011c0016t0011	a0011c0016t0011g0181 a0011c0016t0011g0181	1	388	0.0026	44	c.321 others(61): Show c.3219+540_3219+583dupAGGCCCAGTGCTCCGAAAGGAAGTGGAG AAGGGAGGTGACCGGC	FLT4	ENSG00000037280.16	transcript	ENST00000261937.11	protein_coding	23/29			chr5	TogoVar
FLT4_chr5_180596506_180654600	180634886	A A	ATGGATGC others(37): Show ATGGATGCATGGATGGATGGAAGTATGGGTGGATGGGTGGGTGGG	intron_variant intron_variant	MODIFIER	HG01243.hp2 HG03130.hp1 HG01243.hp2 HG03130.hp1	a0007 a0014 a0007 a0014	a0007c0010 a0014c0020 a0007c0010 a0014c0020	a0007c0010t0010 a0014c0020t0013 a0007c0010t0010 a0014c0020t0013	a0007c0010t0010g0323 a0014c0020t0013g0271 a0007c0010t0010g0323 a0014c0020t0013g0271	2	388	0.0052	44	c.59- others(59): Show c.59-3152_59-3109dupCCCACCCACCCATCCACCCATACTTCCATC CATCCATGCATCCA	FLT4	ENSG00000037280.16	transcript	ENST00000261937.11	protein_coding	1/29			chr5	TogoVar
FLT4_chr5_180596506_180654600	180638705	C C	CCCCAGGC others(37): Show CCCCAGGCTGACTTCTCCGTAGGGGGGGGGGTTAGATGTTCTGTG	intron_variant intron_variant	MODIFIER	HG01346.hp1 HG01346.hp1	a0001 a0001	a0001c0006 a0001c0006	a0001c0006t0001 a0001c0006t0001	a0001c0006t0001g0154 a0001c0006t0001g0154	1	388	0.0026	44	c.59- others(59): Show c.59-6928_59-6927insCACAGAACATCTAACCCCCCCCCCTACGGA GAAGTCAGCCTGGG	FLT4	ENSG00000037280.16	transcript	ENST00000261937.11	protein_coding	1/29			chr5	TogoVar
FMN1_chr15_32760544_33199714	32850270	T T	TTTTGTTT others(37): Show TTTTGTTTCTTTATTTCTGGGGGTTGAAGTGAAGAGATTATGTAA	intron_variant intron_variant	MODIFIER	HG02886.hp2 HG02886.hp2	a0001 a0001	a0001c0070 a0001c0070	a0001c0070t0066 a0001c0070t0066	a0001c0070t0066g0159 a0001c0070t0066g0159	1	196	0.0051	44	c.392 others(63): Show c.3928+6701_3928+6744dupTTACATAATCTCTTCACTTCAACCCC CAGAAATAAAGAAACAAA	FMN1	ENSG00000248905.10	transcript	ENST00000616417.5	protein_coding	17/20			chr15	TogoVar
FMN1_chr15_32760544_33199714	32950022	T T	TATATATA others(37): Show TATATATACACATACACATATATATATACACATATATATATACAC	intron_variant intron_variant	MODIFIER	NA18906.hp2 NA18906.hp2	a0013 a0013	a0013c0033 a0013c0033	a0013c0033t0031 a0013c0033t0031	a0013c0033t0031g0008 a0013c0033t0031g0008	1	196	0.0051	44	c.313 others(65): Show c.3138+14084_3138+14085insGTGTATATATATATGTGTATATAT ATATGTGTATGTGTATATAT	FMN1	ENSG00000248905.10	transcript	ENST00000616417.5	protein_coding	9/20			chr15	TogoVar
FMN1_chr15_32760544_33199714	33048644	A A	AAAAAAAA others(37): Show AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACAAAAAC	intron_variant intron_variant	MODIFIER	HG01496.hp1 HG01496.hp1	a0003 a0003	a0003c0004 a0003c0004	a0003c0004t0001 a0003c0004t0001	a0003c0004t0001g0094 a0003c0004t0001g0094	1	196	0.0051	44	c.216 others(65): Show c.2161+16312_2161+16313insGTTTTTGTTTTTTTTTTTTTTTTT TTTTTTTTTTTTTTTTTTTT	FMN1	ENSG00000248905.10	transcript	ENST00000616417.5	protein_coding	6/20			chr15	TogoVar
FMN2_chr1_240086883_240480187	240431423	T T	TATATATA others(37): Show TATATATATATATATATATATATATATATATATATATATATACAC	intron_variant intron_variant	MODIFIER	NA19043.hp2 NA19043.hp2	a0084 a0084	a0084c0054 a0084c0054	a0084c0054t0003 a0084c0054t0003	a0084c0054t0003g0027 a0084c0054t0003g0027	1	174	0.0058	44	c.491 others(63): Show c.4911-6637_4911-6636insTATATATATATATATATATATATATA TATATATATATATACACA	FMN2	ENSG00000155816.21	transcript	ENST00000319653.14	protein_coding	15/17		INFO_REALIGN_3_PRIME	chr1	TogoVar
FN1_chr2_215355865_215441068	215401263	G G	GAAGGAAG others(37): Show GAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAAGGAAAGGAAAGGA	intron_variant intron_variant	MODIFIER	NA19043.hp2 NA19043.hp2	a0001 a0001	a0001c0006 a0001c0006	a0001c0006t0001 a0001c0006t0001	a0001c0006t0001g0110 a0001c0006t0001g0110	1	240	0.0042	44	c.325 others(63): Show c.3254-1913_3254-1912insTCCTTTCCTTTCCTTTCCTTCCTTCC TTCCTTCCTTCCTTCCTT	FN1	ENSG00000115414.21	transcript	ENST00000354785.11	protein_coding	20/45			chr2	TogoVar
FN3K_chr17_82730615_82756196	82751101	C C	CCGGCCCC others(37): Show CCGGCCCCCCGTCCCCTCCCCCCATCCCTGTCCCCCCGTCCCCCT	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	NA18964.hp1 NA18964.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0035 a0001c0001t0035	a0001c0001t0035g0134 a0001c0001t0035g0134	1	402	0.0025	44	c.34 others(53): Show c.346_*347insCGGCCCCCCGTCCCCTCCCCCCATCCCTGTCCCCCC GTCCCCCT	FN3K	ENSG00000167363.14	transcript	ENST00000300784.8	protein_coding	6/6	347		chr17	TogoVar
FOLR1_chr11_72187140_72201299	72201170	A A	ATACACGT others(37): Show ATACACGTATACACGTACACGTATACACGTATACACGTACACGTG	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02080.hp1 HG02145.hp2 HG03516.hp2 others(2): Show HG02080.hp1 HG02145.hp2 HG03516.hp2 HG06807.hp1 NA18522.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0003 a0001c0001t0001g0024 a0001c0001t0001g0025 a0001c0001t0001g0003 a0001c0001t0001g0024 a0001c0001t0001g0025	5	412	0.0121	44	c.49 others(55): Show c.4993_*4994insTACACGTATACACGTACACGTATACACGTATACA CGTACACGTG	FOLR1	ENSG00000110195.14	transcript	ENST00000393676.5	protein_coding		4872		chr11	TogoVar
FOLR1_chr11_72187140_72201299	72201251	T T	TACACGTA others(37): Show TACACGTATACACGTATACACGCGTATACACGTATACACGTATAC	downstream_gene_variant downstream_gene_variant	MODIFIER	NA19087.hp1 NA19087.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0001 a0001c0001t0001g0001	1	412	0.0024	44	c.50 others(55): Show c.5074_*5075insACACGTATACACGTATACACGCGTATACACGTAT ACACGTATAC	FOLR1	ENSG00000110195.14	transcript	ENST00000393676.5	protein_coding		4953		chr11	TogoVar
FOLR1_chr11_72187140_72201299	72201267	T T	TACACGTA others(37): Show TACACGTATACACGTATACACGTATACAGACGTATACACGTATAC	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00741.hp1 HG00741.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0001 a0001c0001t0001g0001	1	412	0.0024	44	c.50 others(55): Show c.5090_*5091insACACGTATACACGTATACACGTATACAGACGTAT ACACGTATAC	FOLR1	ENSG00000110195.14	transcript	ENST00000393676.5	protein_coding		4969		chr11	TogoVar
FOLR1_chr11_72187140_72201299	72201275	T T	TACACGTA others(37): Show TACACGTATACACGTATACACACGTATACACGTATACACGTATAC	downstream_gene_variant downstream_gene_variant	MODIFIER	NA19005.hp2 NA19084.hp2 NA19005.hp2 NA19084.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0001 a0001c0001t0001g0001	2	412	0.0049	44	c.50 others(55): Show c.5098_*5099insACACGTATACACGTATACACACGTATACACGTAT ACACGTATAC	FOLR1	ENSG00000110195.14	transcript	ENST00000393676.5	protein_coding		4977		chr11	TogoVar
FOLR1_chr11_72187140_72201299	72201277	C C	CACGTATA others(37): Show CACGTATACACGTATACAGACGTATACACGTATACACGTATACAG	downstream_gene_variant downstream_gene_variant	MODIFIER	NA18940.hp2 NA18940.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0001 a0001c0001t0001g0001	1	412	0.0024	44	c.51 others(55): Show c.5100_*5101insACGTATACACGTATACAGACGTATACACGTATAC ACGTATACAG	FOLR1	ENSG00000110195.14	transcript	ENST00000393676.5	protein_coding		4979		chr11	TogoVar
FOXI1_chr5_170100897_170114734	170105348	G G	GGAGAGGG others(37): Show GGAGAGGGGGGGGGGGGGGGAGAGAGAGAGAGAGAGAGAGAGAGA	upstream_gene_variant upstream_gene_variant	MODIFIER	HG04204.hp2 HG04204.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0002 a0001c0002t0002	a0001c0002t0002g0004 a0001c0002t0002g0004	1	412	0.0024	44	c.-61 others(53): Show c.-610_-609insGAGAGGGGGGGGGGGGGGGAGAGAGAGAGAGAGAGA GAGAGAGA	FOXI1	ENSG00000168269.10	transcript	ENST00000306268.8	protein_coding		548		chr5	TogoVar
FOXI1_chr5_170100897_170114734	170105368	G G	GGAGAGAG others(37): Show GGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00558.hp2 HG01167.hp2 HG01169.hp2 others(14): Show HG00558.hp2 HG01167.hp2 HG01169.hp2 HG01346.hp1 HG01346.hp2 HG01361.hp1 HG02809.hp1 NA18972.hp1 NA18978.hp1 NA18993.hp1 NA19003.hp1 NA19010.hp1 NA19068.hp1 NA19070.hp1 NA19080.hp1 NA19081.hp1 NA19085.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0001 a0001c0001t0001g0003 a0001c0001t0001g0001 a0001c0001t0001g0003	17	412	0.0413	44	c.-59 others(53): Show c.-590_-589insGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA GAGAGAGA	FOXI1	ENSG00000168269.10	transcript	ENST00000306268.8	protein_coding		528		chr5	TogoVar
FOXI1_chr5_170100897_170114734	170105368	G G	GGAGGGAG others(37): Show GGAGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01943.hp1 HG01943.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0001 a0001c0001t0001g0001	1	412	0.0024	44	c.-59 others(53): Show c.-590_-589insGAGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA GAGAGAGA	FOXI1	ENSG00000168269.10	transcript	ENST00000306268.8	protein_coding		528		chr5	TogoVar
FOXI1_chr5_170100897_170114734	170105370	G G	GGAGAGAG others(37): Show GGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00544.hp1 NA18959.hp2 HG00544.hp1 NA18959.hp2	a0001 a0001	a0001c0001 a0001c0003 a0001c0001 a0001c0003	a0001c0001t0006 a0001c0003t0005 a0001c0001t0006 a0001c0003t0005	a0001c0001t0006g0005 a0001c0003t0005g0007 a0001c0001t0006g0005 a0001c0003t0005g0007	2	412	0.0049	44	c.-58 others(53): Show c.-588_-587insGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA GAGAGAGA	FOXI1	ENSG00000168269.10	transcript	ENST00000306268.8	protein_coding		526		chr5	TogoVar
FOXI2_chr10_127732185_127746183	127739903	A A	ACCCACAC others(37): Show ACCCACACCCACACTCACACCCACACTCACACTCACACCCACACC	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	NA20905.hp1 NA20905.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0098 a0001c0001t0098	a0001c0001t0098g0001 a0001c0001t0098g0001	1	434	0.0023	44	c.93 others(53): Show c.939_*940insCCACACCCACACTCACACCCACACTCACACTCACAC CCACACCC	FOXI2	ENSG00000186766.8	transcript	ENST00000388920.5	protein_coding	2/2	940	INFO_REALIGN_3_PRIME	chr10	TogoVar
FOXI2_chr10_127732185_127746183	127739903	A A	ACCCACAC others(37): Show ACCCACACTCACACTCACACCCACACCCACACCCACACCCACACC	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	NA19002.hp1 NA19002.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0103 a0001c0001t0103	a0001c0001t0103g0001 a0001c0001t0103g0001	1	434	0.0023	44	c.93 others(53): Show c.939_*940insCCACACTCACACTCACACCCACACCCACACCCACAC CCACACCC	FOXI2	ENSG00000186766.8	transcript	ENST00000388920.5	protein_coding	2/2	940	INFO_REALIGN_3_PRIME	chr10	TogoVar
FOXI2_chr10_127732185_127746183	127739937	A A	ACCCACAC others(37): Show ACCCACACCCACACCCACACCCACACCCACACCCACACTCACACC	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	NA18949.hp1 NA19012.hp2 NA18949.hp1 NA19012.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0044 a0001c0001t0044	a0001c0001t0044g0001 a0001c0001t0044g0001	2	434	0.0046	44	c.97 others(53): Show c.973_*974insCCACACCCACACCCACACCCACACCCACACCCACAC TCACACCC	FOXI2	ENSG00000186766.8	transcript	ENST00000388920.5	protein_coding	2/2	974	INFO_REALIGN_3_PRIME	chr10	TogoVar
FOXJ2_chr12_8027716_8060517	8050855	T T	TCCCTTCC others(37): Show TCCCTTCCCTTCCCCTTCCCTTCCCCTTCCCTTCCCCTTCCCTTC	intron_variant intron_variant	MODIFIER	HG03195.hp1 HG03225.hp1 HG03195.hp1 HG03225.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0021 a0001c0002t0021	a0001c0002t0021g0029 a0001c0002t0021g0029	2	374	0.0054	44	c.163 others(61): Show c.1636+249_1636+292dupCTTCCCTTCCCCTTCCCTTCCCCTTCCC TTCCCCTTCCCTTCCC	FOXJ2	ENSG00000065970.9	transcript	ENST00000162391.8	protein_coding	10/10		INFO_REALIGN_3_PRIME	chr12	TogoVar
FOXK1_chr7_4677295_4776442	4705959	T T	TGTATATA others(37): Show TGTATATATATATACGTATATATACGTATATATACGTATATATAC	intron_variant intron_variant	MODIFIER	HG02080.hp1 HG02080.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0012 a0001c0001t0012	a0001c0001t0012g0005 a0001c0001t0012g0005	1	294	0.0034	44	c.560 others(63): Show c.560+23101_560+23144dupTATACGTATATATACGTATATATACG TATATATACGTATATATA	FOXK1	ENSG00000164916.11	transcript	ENST00000328914.5	protein_coding	1/8		INFO_REALIGN_3_PRIME	chr7	TogoVar
FOXP1_chr3_70949708_71588728	71435687	G G	GGGACGGA others(37): Show GGGACGGAGGGAGGGAGGGAGGGACGGAGGGAGGGAGGGAGGGAC	intron_variant intron_variant	MODIFIER	HG02486.hp2 HG02486.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0065 a0001c0001t0065	a0001c0001t0065g0035 a0001c0001t0065g0035	1	96	0.0104	44	c.-16 others(65): Show c.-168+57738_-168+57739insGTCCCTCCCTCCCTCCCTCCGTCC CTCCCTCCCTCCCTCCGTCC	FOXP1	ENSG00000114861.24	transcript	ENST00000649528.3	protein_coding	3/20			chr3	TogoVar
FOXP1_chr3_70949708_71588728	71586871	A A	AAAAAAAA others(37): Show AAAAAAAAAAAAAAAAAAAAAAAAAAAAAGATAAAAAAAAAATAG	upstream_gene_variant upstream_gene_variant	MODIFIER	HG03139.hp2 HG03139.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0076 a0001c0001t0076	a0001c0001t0076g0024 a0001c0001t0076g0024	1	96	0.0104	44	c.-37 others(55): Show c.-3748_-3747insCTATTTTTTTTTTATCTTTTTTTTTTTTTTTTTT TTTTTTTTTT	FOXP1	ENSG00000114861.24	transcript	ENST00000649528.3	protein_coding		3144		chr3	TogoVar
FOXQ1_chr6_1307098_1319758	1311016	C C	CCGACACT others(37): Show CCGACACTGGTGCCAGTGAGGTCACAGCAAAAGTCCCAAAGGAAT	upstream_gene_variant upstream_gene_variant	MODIFIER	NA18994.hp1 NA18994.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0000 a0001c0001t0002g0000	1	406	0.0025	44	c.-16 others(55): Show c.-1689_-1688insCGACACTGGTGCCAGTGAGGTCACAGCAAAAGTC CCAAAGGAAT	FOXQ1	ENSG00000164379.7	transcript	ENST00000296839.5	protein_coding		1081		chr6	TogoVar
FOXQ1_chr6_1307098_1319758	1316935	G G	GCCCCCCG others(37): Show GCCCCCCGCCCACCCCTCTCCCGCCCCCCCTCCAGCCTACCCCTC	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02886.hp1 HG02886.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0000 a0001c0001t0002g0000	1	406	0.0025	44	c.30 others(55): Show c.3019_*3020insCCCCCCGCCCACCCCTCTCCCGCCCCCCCTCCAG CCTACCCCTC	FOXQ1	ENSG00000164379.7	transcript	ENST00000296839.5	protein_coding		2178		chr6	TogoVar
FOXQ1_chr6_1307098_1319758	1316935	G G	GCCCCCGC others(37): Show GCCCCCGCCCACCCCCCCTCCCGCCCCCCCTCCAGCCTACCCCTC	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01175.hp1 HG02738.hp2 NA18966.hp2 HG01175.hp1 HG02738.hp2 NA18966.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0002c0005 a0001c0001 a0002c0005	a0001c0001t0002 a0002c0005t0002 a0001c0001t0002 a0002c0005t0002	a0001c0001t0002g0000 a0002c0005t0002g0000 a0001c0001t0002g0000 a0002c0005t0002g0000	3	406	0.0074	44	c.30 others(55): Show c.3019_*3020insCCCCCGCCCACCCCCCCTCCCGCCCCCCCTCCAG CCTACCCCTC	FOXQ1	ENSG00000164379.7	transcript	ENST00000296839.5	protein_coding		2178		chr6	TogoVar
FOXQ1_chr6_1307098_1319758	1316935	G G	GCCCCCGC others(37): Show GCCCCCGCCCACCCCCCTCCCGCCCCCCCCTCCAGCCTACCCCTC	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01192.hp2 HG02738.hp1 NA18998.hp2 others(1): Show HG01192.hp2 HG02738.hp1 NA18998.hp2 NA20805.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0000 a0001c0001t0002g0000	4	406	0.0099	44	c.30 others(55): Show c.3019_*3020insCCCCCGCCCACCCCCCTCCCGCCCCCCCCTCCAG CCTACCCCTC	FOXQ1	ENSG00000164379.7	transcript	ENST00000296839.5	protein_coding		2178		chr6	TogoVar
FOXQ1_chr6_1307098_1319758	1316945	A A	ACCCCCCT others(37): Show ACCCCCCTCCCGCCCCCCCTCCAGCCTACCCCTCCCCCCGCCCAC	downstream_gene_variant downstream_gene_variant	MODIFIER	NA19058.hp1 NA19058.hp1	a0005 a0005	a0005c0007 a0005c0007	a0005c0007t0001 a0005c0007t0001	a0005c0007t0001g0000 a0005c0007t0001g0000	1	406	0.0025	44	c.30 others(55): Show c.3029_*3030insCCCCCCTCCCGCCCCCCCTCCAGCCTACCCCTCC CCCCGCCCAC	FOXQ1	ENSG00000164379.7	transcript	ENST00000296839.5	protein_coding		2188		chr6	TogoVar
FOXQ1_chr6_1307098_1319758	1316956	G G	GCCCCCCC others(37): Show GCCCCCCCTCCAGCCTACCCCTCCCCCCGCCCACCCCCCTCCCGC	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02615.hp2 HG02970.hp1 NA18969.hp2 others(1): Show HG02615.hp2 HG02970.hp1 NA18969.hp2 NA18977.hp1	a0001 a0006 a0013 others(1): Show a0001 a0006 a0013 a0015	a0001c0001 a0006c0008 a0013c0023 others(1): Show a0001c0001 a0006c0008 a0013c0023 a0015c0018	a0001c0001t0002 a0006c0008t0002 a0013c0023t0002 others(1): Show a0001c0001t0002 a0006c0008t0002 a0013c0023t0002 a0015c0018t0001	a0001c0001t0002g0000 a0006c0008t0002g0000 a0013c0023t0002g0000 others(1): Show a0001c0001t0002g0000 a0006c0008t0002g0000 a0013c0023t0002g0000 a0015c0018t0001g0000	4	406	0.0099	44	c.30 others(55): Show c.3040_*3041insCCCCCCCTCCAGCCTACCCCTCCCCCCGCCCACC CCCCTCCCGC	FOXQ1	ENSG00000164379.7	transcript	ENST00000296839.5	protein_coding		2199		chr6	TogoVar
FOXQ1_chr6_1307098_1319758	1316999	G G	GCCCCCCC others(37): Show GCCCCCCCCTCCAGCCTACCCCTCCCCCCGCCCACCCCCCTCCCG	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01952.hp1 HG01993.hp2 NA19057.hp2 HG01952.hp1 HG01993.hp2 NA19057.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0002c0005 a0001c0001 a0002c0005	a0001c0001t0002 a0001c0001t0010 a0002c0005t0002 a0001c0001t0002 a0001c0001t0010 a0002c0005t0002	a0001c0001t0002g0000 a0001c0001t0010g0000 a0002c0005t0002g0000 a0001c0001t0002g0000 a0001c0001t0010g0000 a0002c0005t0002g0000	3	406	0.0074	44	c.30 others(55): Show c.3083_*3084insCCCCCCCCTCCAGCCTACCCCTCCCCCCGCCCAC CCCCCTCCCG	FOXQ1	ENSG00000164379.7	transcript	ENST00000296839.5	protein_coding		2242		chr6	TogoVar
FOXQ1_chr6_1307098_1319758	1316999	G G	GCCCCCCC others(37): Show GCCCCCCCTCCAGCCTACCCCTCCCCCCGCCCACCCCCCCTCCCG	downstream_gene_variant downstream_gene_variant	MODIFIER	NA19062.hp2 NA19062.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0000 a0001c0001t0002g0000	1	406	0.0025	44	c.30 others(55): Show c.3083_*3084insCCCCCCCTCCAGCCTACCCCTCCCCCCGCCCACC CCCCCTCCCG	FOXQ1	ENSG00000164379.7	transcript	ENST00000296839.5	protein_coding		2242		chr6	TogoVar
FOXQ1_chr6_1307098_1319758	1316999	G G	GCCCCCCC others(37): Show GCCCCCCCTCCAGCCTACCCCTCCCCCCGCCCACCCCCCTCCCGC	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02109.hp2 HG02109.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0009 a0001c0001t0009	a0001c0001t0009g0000 a0001c0001t0009g0000	1	406	0.0025	44	c.30 others(55): Show c.3083_*3084insCCCCCCCTCCAGCCTACCCCTCCCCCCGCCCACC CCCCTCCCGC	FOXQ1	ENSG00000164379.7	transcript	ENST00000296839.5	protein_coding		2242		chr6	TogoVar
FOXQ1_chr6_1307098_1319758	1317047	C C	CCCCCCAG others(37): Show CCCCCCAGCCTACCCCCTCCCCCCGCCCACCCCCTCCTCCCGCCT	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00639.hp1 HG01884.hp2 HG02280.hp1 others(6): Show HG00639.hp1 HG01884.hp2 HG02280.hp1 HG02615.hp1 HG02647.hp2 HG02965.hp2 HG03098.hp2 HG03195.hp2 NA18522.hp2	a0003 a0003	a0003c0002 a0003c0002	a0003c0002t0003 a0003c0002t0003	a0003c0002t0003g0000 a0003c0002t0003g0000	9	406	0.0222	44	c.31 others(55): Show c.3131_*3132insCCCCCAGCCTACCCCCTCCCCCCGCCCACCCCCT CCTCCCGCCT	FOXQ1	ENSG00000164379.7	transcript	ENST00000296839.5	protein_coding		2290		chr6	TogoVar
FRAS1_chr4_78052323_78549269	78249064	C C	CATATATA others(37): Show CATATATATATATATATGCATATATATATATATATATATATATAT	intron_variant intron_variant	MODIFIER	HG02572.hp1 HG02572.hp1	a0064 a0064	a0064c0084 a0064c0084	a0064c0084t0004 a0064c0084t0004	a0064c0084t0004g0156 a0064c0084t0004g0156	1	178	0.0056	44	c.310 others(61): Show c.310-3312_310-3311insGCATATATATATATATATATATATATAT ATATATATATATATAT	FRAS1	ENSG00000138759.20	transcript	ENST00000512123.4	protein_coding	4/73		INFO_REALIGN_3_PRIME	chr4	TogoVar
FREM1_chr9_14732152_14915428	14847426	A A	AAGGAAGG others(37): Show AAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGG	intron_variant intron_variant	MODIFIER	HG01169.hp1 HG02647.hp2 HG01169.hp1 HG02647.hp2	a0016 a0045 a0016 a0045	a0016c0018 a0045c0058 a0016c0018 a0045c0058	a0016c0018t0001 a0045c0058t0004 a0016c0018t0001 a0045c0058t0004	a0016c0018t0001g0339 a0045c0058t0004g0101 a0016c0018t0001g0339 a0045c0058t0004g0101	2	346	0.0058	44	c.126 others(63): Show c.1261+1238_1261+1239insCCCTTCCTTCCTTCCTTCCTTCCTTC CTTCCTTCCTTCCTTCCT	FREM1	ENSG00000164946.20	transcript	ENST00000380880.4	protein_coding	7/36			chr9	TogoVar
FREM1_chr9_14732152_14915428	14860546	C C	CATATATA others(37): Show CATATATATACACACATATATATATACACATATATATACACACAT	intron_variant intron_variant	MODIFIER	HG02615.hp2 HG02615.hp2	a0051 a0051	a0051c0092 a0051c0092	a0051c0092t0003 a0051c0092t0003	a0051c0092t0003g0051 a0051c0092t0003g0051	1	346	0.0029	44	c.330 others(61): Show c.330-1063_330-1062insATGTGTGTATATATATGTGTATATATAT ATGTGTGTATATATAT	FREM1	ENSG00000164946.20	transcript	ENST00000380880.4	protein_coding	3/36			chr9	TogoVar
FREM1_chr9_14732152_14915428	14860546	C C	CATATATA others(37): Show CATATATATATACACATATATATATACACATATATATATACACAT	intron_variant intron_variant	MODIFIER	HG02818.hp1 HG02818.hp1	a0078 a0078	a0078c0170 a0078c0170	a0078c0170t0003 a0078c0170t0003	a0078c0170t0003g0049 a0078c0170t0003g0049	1	346	0.0029	44	c.330 others(61): Show c.330-1063_330-1062insATGTGTATATATATATGTGTATATATAT ATGTGTATATATATAT	FREM1	ENSG00000164946.20	transcript	ENST00000380880.4	protein_coding	3/36			chr9	TogoVar
FREM1_chr9_14732152_14915428	14860553	A A	ATATGTGT others(37): Show ATATGTGTGTATATATGTGTATATATATGTGTATATATATGTGTG	intron_variant intron_variant	MODIFIER	HG03516.hp2 NA19030.hp2 NA20300.hp2 HG03516.hp2 NA19030.hp2 NA20300.hp2	a0003 a0016 a0049 a0003 a0016 a0049	a0003c0069 a0016c0094 a0049c0096 a0003c0069 a0016c0094 a0049c0096	a0003c0069t0004 a0016c0094t0004 a0049c0096t0004 a0003c0069t0004 a0016c0094t0004 a0049c0096t0004	a0003c0069t0004g0175 a0016c0094t0004g0203 a0049c0096t0004g0169 a0003c0069t0004g0175 a0016c0094t0004g0203 a0049c0096t0004g0169	3	346	0.0087	44	c.330 others(61): Show c.330-1070_330-1069insCACACATATATATACACATATATATACA CATATATACACACATA	FREM1	ENSG00000164946.20	transcript	ENST00000380880.4	protein_coding	3/36			chr9	TogoVar

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Search Results (Total: 4475 hits)