Joint Open Genome and Omics Platform (JoGo)

Search by Variant

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Chr

Chromosome name (e.g., chr11).

Snpeff genename

Exact SnpEff gene name.

Sampleids

Target sampleid (e.g. HG02615).

Snpeff haplotype class

Haplotype-annotation class (e.g., ahapid, ahapid+chapid).

Snpeff annotation impact

Exact impact level (e.g., HIGH, MODERATE, LOW).

Snpeff annotation impact detail

Keyword match in SnpEff annotation.

Hapid

One or more haplotype IDs (comma-separated; e.g., a0001, a01, a0001c0001, a01c02, a1c2, a0001c0001t0005, a0001c0001t0005g0018).

Samplehapid

Sample haplotype IDs to include (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

No_hapid

Haplotype IDs to exclude (comma-separated; e.g., a0001, a0002, a0001c0001, a0001c0001t0005, a1, a01).

No_samplehapid

Sample haplotype IDs to exclude (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

Start

Start position (GRCh38).

End

End position (GRCh38).

Minac

Minimum alternate allele count (≥).

Maxac

Maximum alternate allele count (≤).

Minlen

Minimum variant length (≥).

Maxlen

Maximum variant length (≤).

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Select column to sort.

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⚠️ Results limited to 10,000 hits. Refine your search for more specific results.

regionname	pos	ref	alt	annotation	impact	samples	ahapids	achapids	acthapids	actghapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	external
CD59_chr11_33698010_33741423	33701754	A A	AGTGTGT AGTGTGT	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01167.hp1 HG02055.hp2 HG02280.hp1 others(2): Show HG01167.hp1 HG02055.hp2 HG02280.hp1 HG02559.hp1 NA19043.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0016 a0001c0001t0023 a0001c0001t0051 others(1): Show a0001c0001t0016 a0001c0001t0023 a0001c0001t0051 a0001c0001t0072	a0001c0001t0016g0159 a0001c0001t0023g0154 a0001c0001t0023g0155 others(2): Show a0001c0001t0016g0159 a0001c0001t0023g0154 a0001c0001t0023g0155 a0001c0001t0051g0099 a0001c0001t0072g0100	5	380	0.0132	6	c.83 others(17): Show c.8371_*8372insACACAC	CD59	ENSG00000085063.18	transcript	ENST00000642928.2	protein_coding		1255		chr11	TogoVar
CD59_chr11_33698010_33741423	33737235	G G	GACACAC GACACAC	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01978.hp2 HG03704.hp2 HG03831.hp2 others(1): Show HG01978.hp2 HG03704.hp2 HG03831.hp2 NA19007.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0021 a0001c0001t0026 others(1): Show a0001c0001t0002 a0001c0001t0021 a0001c0001t0026 a0001c0001t0065	a0001c0001t0002g0005 a0001c0001t0021g0204 a0001c0001t0026g0101 others(1): Show a0001c0001t0002g0005 a0001c0001t0021g0204 a0001c0001t0026g0101 a0001c0001t0065g0090	4	380	0.0105	6	c.-87 others(15): Show c.-873_-872insGTGTGT	CD59	ENSG00000085063.18	transcript	ENST00000642928.2	protein_coding		813		chr11	TogoVar
CD59_chr11_33698010_33741423	33740546	C C	CAAAAAA CAAAAAA	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00741.hp2 HG01070.hp1 HG01071.hp1 others(5): Show HG00741.hp2 HG01070.hp1 HG01071.hp1 HG02258.hp1 HG03490.hp2 HG03492.hp2 HG03831.hp2 NA18989.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0006 a0001c0001t0025 others(1): Show a0001c0001t0003 a0001c0001t0006 a0001c0001t0025 a0001c0001t0026	a0001c0001t0003g0002 a0001c0001t0003g0026 a0001c0001t0003g0081 others(3): Show a0001c0001t0003g0002 a0001c0001t0003g0026 a0001c0001t0003g0081 a0001c0001t0006g0060 a0001c0001t0025g0080 a0001c0001t0026g0101	8	380	0.0211	6	c.-41 others(17): Show c.-4184_-4183insTTTTTT	CD59	ENSG00000085063.18	transcript	ENST00000642928.2	protein_coding		4124		chr11	TogoVar
CD69_chr12_9747486_9765901	9759484	G G	GTTATTA GTTATTA	intron_variant intron_variant	MODIFIER	HG00280.hp2 HG00323.hp2 HG00423.hp1 others(143): Show HG00280.hp2 HG00323.hp2 HG00423.hp1 HG00438.hp2 HG00544.hp1 HG00544.hp2 HG00597.hp1 HG00609.hp2 HG00621.hp1 HG00621.hp2 HG00639.hp1 HG00738.hp1 HG01070.hp2 HG01071.hp1 HG01074.hp2 HG01106.hp2 HG01109.hp1 HG01109.hp2 HG01123.hp2 HG01346.hp2 HG01433.hp1 HG01433.hp2 HG01496.hp1 HG01891.hp1 HG01928.hp1 HG01952.hp1 HG01952.hp2 HG01981.hp2 HG02004.hp2 HG02055.hp1 HG02071.hp2 HG02080.hp2 HG02083.hp1 HG02109.hp2 HG02129.hp1 HG02129.hp2 HG02145.hp2 HG02155.hp1 HG02155.hp2 HG02165.hp1 HG02273.hp2 HG02280.hp2 HG02300.hp2 HG02451.hp1 HG02559.hp2 HG02622.hp1 HG02717.hp2 HG02723.hp1 HG02723.hp2 HG02735.hp2 HG02886.hp1 HG02976.hp1 HG03098.hp2 HG03209.hp1 HG03225.hp1 HG03471.hp2 HG03540.hp1 HG03579.hp2 HG03669.hp2 HG03710.hp1 HG04115.hp2 HG04184.hp1 HG06807.hp2 NA18522.hp1 NA18941.hp2 NA18945.hp2 NA18947.hp1 NA18948.hp1 NA18950.hp1 NA18950.hp2 NA18952.hp1 NA18952.hp2 NA18953.hp1 NA18955.hp1 NA18956.hp1 NA18959.hp2 NA18961.hp2 NA18962.hp2 NA18963.hp1 NA18964.hp1 NA18965.hp1 NA18967.hp1 NA18968.hp2 NA18969.hp1 NA18969.hp2 NA18970.hp1 NA18972.hp1 NA18973.hp1 NA18974.hp2 NA18975.hp1 NA18977.hp1 NA18979.hp2 NA18980.hp2 NA18981.hp1 NA18982.hp1 NA18984.hp1 NA18984.hp2 NA18986.hp2 NA18990.hp2 NA18991.hp1 NA18992.hp2 NA18993.hp2 NA18994.hp1 NA18997.hp1 NA18998.hp1 NA18999.hp1 NA18999.hp2 NA19001.hp2 NA19002.hp1 NA19004.hp2 NA19005.hp1 NA19006.hp1 NA19011.hp1 NA19054.hp1 NA19054.hp2 NA19056.hp1 NA19059.hp1 NA19059.hp2 NA19060.hp1 NA19060.hp2 NA19064.hp1 NA19064.hp2 NA19065.hp1 NA19066.hp2 NA19070.hp2 NA19072.hp1 NA19074.hp1 NA19074.hp2 NA19075.hp1 NA19078.hp2 NA19079.hp1 NA19079.hp2 NA19080.hp2 NA19081.hp2 NA19082.hp1 NA19082.hp2 NA19086.hp2 NA19087.hp1 NA19087.hp2 NA19088.hp1 NA19089.hp1 NA19089.hp2 NA19090.hp1 NA20129.hp1 NA20300.hp1 NA20300.hp2	a0001 a0001	a0001c0001 a0001c0005 a0001c0001 a0001c0005	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(9): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 a0001c0001t0005 a0001c0001t0006 a0001c0001t0007 a0001c0001t0010 a0001c0001t0011 a0001c0001t0013 a0001c0001t0014 a0001c0005t0001	a0001c0001t0001g0002 a0001c0001t0001g0025 a0001c0001t0001g0026 others(25): Show a0001c0001t0001g0002 a0001c0001t0001g0025 a0001c0001t0001g0026 a0001c0001t0001g0038 a0001c0001t0001g0039 a0001c0001t0001g0040 a0001c0001t0001g0090 a0001c0001t0001g0094 a0001c0001t0001g0096 a0001c0001t0001g0097 a0001c0001t0001g0098 a0001c0001t0001g0099 a0001c0001t0001g0100 a0001c0001t0002g0005 a0001c0001t0002g0092 a0001c0001t0003g0024 a0001c0001t0003g0037 a0001c0001t0004g0086 a0001c0001t0004g0087 a0001c0001t0005g0085 a0001c0001t0006g0008 a0001c0001t0006g0111 a0001c0001t0007g0091 a0001c0001t0010g0043 a0001c0001t0011g0095 a0001c0001t0013g0109 a0001c0001t0014g0110 a0001c0005t0001g0093	146	450	0.3244	6	c.64+ others(21): Show c.64+1267_64+1272dupTAATAA	CD69	ENSG00000110848.8	transcript	ENST00000228434.7	protein_coding	1/4			chr12	TogoVar
CD6_chr11_60966680_61025377	61011178	C C	CGTGTGT CGTGTGT	intron_variant intron_variant	MODIFIER	HG00741.hp2 HG01167.hp2 HG02615.hp2 HG00741.hp2 HG01167.hp2 HG02615.hp2	a0002 a0005 a0002 a0005	a0002c0003 a0005c0006 a0002c0003 a0005c0006	a0002c0003t0001 a0005c0006t0001 a0002c0003t0001 a0005c0006t0001	a0002c0003t0001g0242 a0002c0003t0001g0246 a0005c0006t0001g0247 a0002c0003t0001g0242 a0002c0003t0001g0246 a0005c0006t0001g0247	3	302	0.0099	6	c.115 others(21): Show c.1150+64_1150+69dupGTGTGT	CD6	ENSG00000013725.14	transcript	ENST00000313421.11	protein_coding	6/12		INFO_REALIGN_3_PRIME	chr11	TogoVar
CD74_chr5_150396639_150417910	150397153	C C	CAAAAAA CAAAAAA	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00438.hp1 HG00621.hp2 HG02015.hp2 others(6): Show HG00438.hp1 HG00621.hp2 HG02015.hp2 NA18949.hp2 NA18953.hp2 NA18957.hp1 NA19059.hp2 NA19080.hp2 NA19090.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0003 a0001c0001t0002 a0001c0001t0003	a0001c0001t0002g0003 a0001c0001t0002g0021 a0001c0001t0003g0008 others(1): Show a0001c0001t0002g0003 a0001c0001t0002g0021 a0001c0001t0003g0008 a0001c0001t0003g0141	9	408	0.0221	6	c.50 others(17): Show c.5081_*5086dupTTTTTT	CD74	ENSG00000019582.17	transcript	ENST00000009530.13	protein_coding		4485		chr5	TogoVar
CD80_chr3_119519293_119564614	119522804	T T	TTGTGTG TTGTGTG	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01106.hp2 HG01884.hp1 HG02451.hp1 others(3): Show HG01106.hp2 HG01884.hp1 HG02451.hp1 HG02965.hp1 HG03139.hp1 HG03195.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0004 a0001c0001t0007 a0001c0001t0002 a0001c0001t0004 a0001c0001t0007	a0001c0001t0002g0362 a0001c0001t0004g0248 a0001c0001t0004g0340 others(3): Show a0001c0001t0002g0362 a0001c0001t0004g0248 a0001c0001t0004g0340 a0001c0001t0004g0341 a0001c0001t0004g0376 a0001c0001t0007g0043	6	426	0.0141	6	c.29 others(17): Show c.2978_*2983dupCACACA	CD80	ENSG00000121594.12	transcript	ENST00000264246.8	protein_coding		1488		chr3	TogoVar
CD80_chr3_119519293_119564614	119560351	C C	CAAAAAA CAAAAAA	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00099.hp2 HG00423.hp1 HG00673.hp1 others(53): Show HG00099.hp2 HG00423.hp1 HG00673.hp1 HG00738.hp1 HG01069.hp2 HG01071.hp2 HG01884.hp2 HG02027.hp2 HG02083.hp1 HG02132.hp2 HG02165.hp2 HG02258.hp1 HG02258.hp2 HG02523.hp1 HG02523.hp2 HG02559.hp2 HG02602.hp2 HG02683.hp1 HG02735.hp1 HG02735.hp2 HG03704.hp1 HG03710.hp2 HG03927.hp1 HG03927.hp2 HG03942.hp1 HG04115.hp2 HG04204.hp1 HG04204.hp2 HG04228.hp2 NA18612.hp2 NA18941.hp2 NA18946.hp2 NA18950.hp1 NA18950.hp2 NA18951.hp2 NA18964.hp1 NA18966.hp2 NA18970.hp2 NA18971.hp2 NA18981.hp2 NA18983.hp2 NA18987.hp2 NA18990.hp2 NA18992.hp2 NA18993.hp1 NA18993.hp2 NA19006.hp1 NA19007.hp2 NA19057.hp1 NA19058.hp2 NA19064.hp1 NA19066.hp1 NA19072.hp1 NA19085.hp1 NA19089.hp1 NA20752.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0007 a0001c0001t0008 a0001c0001t0009 others(10): Show a0001c0001t0007 a0001c0001t0008 a0001c0001t0009 a0001c0001t0011 a0001c0001t0012 a0001c0001t0015 a0001c0001t0016 a0001c0001t0018 a0001c0001t0019 a0001c0002t0006 a0001c0002t0009 a0001c0002t0012 a0001c0002t0013	a0001c0001t0007g0006 a0001c0001t0007g0008 a0001c0001t0007g0009 others(51): Show a0001c0001t0007g0006 a0001c0001t0007g0008 a0001c0001t0007g0009 a0001c0001t0007g0010 a0001c0001t0007g0049 a0001c0001t0007g0051 a0001c0001t0007g0052 a0001c0001t0007g0062 a0001c0001t0007g0063 a0001c0001t0007g0071 a0001c0001t0007g0077 a0001c0001t0007g0080 a0001c0001t0007g0082 a0001c0001t0007g0084 a0001c0001t0007g0090 a0001c0001t0007g0108 a0001c0001t0007g0110 a0001c0001t0007g0111 a0001c0001t0007g0112 a0001c0001t0008g0056 a0001c0001t0008g0059 a0001c0001t0008g0066 a0001c0001t0008g0089 a0001c0001t0008g0092 a0001c0001t0008g0093 a0001c0001t0008g0095 a0001c0001t0008g0102 a0001c0001t0009g0061 a0001c0001t0009g0074 a0001c0001t0009g0075 a0001c0001t0009g0076 a0001c0001t0009g0104 a0001c0001t0009g0105 a0001c0001t0011g0047 a0001c0001t0011g0048 a0001c0001t0011g0057 a0001c0001t0011g0068 a0001c0001t0011g0081 a0001c0001t0012g0079 a0001c0001t0012g0091 a0001c0001t0012g0107 a0001c0001t0015g0314 a0001c0001t0016g0106 a0001c0001t0018g0053 a0001c0001t0018g0094 a0001c0001t0019g0100 a0001c0001t0019g0101 a0001c0002t0006g0378 a0001c0002t0006g0379 a0001c0002t0009g0050 a0001c0002t0009g0096 a0001c0002t0009g0098 a0001c0002t0012g0097 a0001c0002t0013g0087	56	426	0.1315	6	c.-11 others(17): Show c.-1113_-1112insTTTTTT	CD80	ENSG00000121594.12	transcript	ENST00000264246.8	protein_coding		738		chr3	TogoVar
CD82_chr11_44560663_44625358	44590610	C C	CAAAAAA CAAAAAA	intron_variant intron_variant	MODIFIER	HG01884.hp1 HG02486.hp2 HG02622.hp2 others(9): Show HG01884.hp1 HG02486.hp2 HG02622.hp2 HG02886.hp1 HG02895.hp2 HG02922.hp2 HG02976.hp1 HG02976.hp2 HG03017.hp1 HG03130.hp2 HG03579.hp1 NA18522.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0001c0009 a0001c0010 others(2): Show a0001c0001 a0001c0009 a0001c0010 a0001c0018 a0002c0025	a0001c0001t0001 a0001c0001t0004 a0001c0001t0008 others(7): Show a0001c0001t0001 a0001c0001t0004 a0001c0001t0008 a0001c0001t0015 a0001c0001t0026 a0001c0001t0049 a0001c0009t0001 a0001c0010t0004 a0001c0018t0012 a0002c0025t0004	a0001c0001t0001g0250 a0001c0001t0001g0251 a0001c0001t0004g0254 others(9): Show a0001c0001t0001g0250 a0001c0001t0001g0251 a0001c0001t0004g0254 a0001c0001t0008g0266 a0001c0001t0015g0352 a0001c0001t0026g0190 a0001c0001t0049g0343 a0001c0009t0001g0086 a0001c0010t0004g0174 a0001c0018t0012g0269 a0001c0018t0012g0341 a0002c0025t0004g0349	12	372	0.0323	6	c.-21 others(23): Show c.-21+3069_-21+3074dupAAAAAA	CD82	ENSG00000085117.12	transcript	ENST00000227155.9	protein_coding	2/9		INFO_REALIGN_3_PRIME	chr11	TogoVar
CD82_chr11_44560663_44625358	44594388	A A	ACCAGCC ACCAGCC	intron_variant intron_variant	MODIFIER	HG00099.hp2 HG00140.hp2 HG00323.hp1 others(109): Show HG00099.hp2 HG00140.hp2 HG00323.hp1 HG00558.hp2 HG00597.hp2 HG00639.hp2 HG00642.hp1 HG00735.hp1 HG00741.hp1 HG01070.hp2 HG01071.hp2 HG01074.hp2 HG01109.hp2 HG01123.hp1 HG01168.hp2 HG01243.hp1 HG01243.hp2 HG01257.hp2 HG01258.hp2 HG01346.hp2 HG01358.hp1 HG01496.hp1 HG01515.hp1 HG01884.hp1 HG01891.hp2 HG01928.hp2 HG01943.hp2 HG01952.hp2 HG01975.hp2 HG01978.hp2 HG01981.hp2 HG02004.hp1 HG02056.hp2 HG02074.hp2 HG02083.hp1 HG02145.hp2 HG02148.hp2 HG02257.hp1 HG02258.hp1 HG02273.hp2 HG02451.hp1 HG02486.hp2 HG02559.hp1 HG02559.hp2 HG02572.hp2 HG02615.hp1 HG02622.hp1 HG02622.hp2 HG02630.hp1 HG02717.hp1 HG02717.hp2 HG02735.hp1 HG02738.hp1 HG02809.hp2 HG02886.hp1 HG02886.hp2 HG02895.hp1 HG02897.hp2 HG02922.hp1 HG02922.hp2 HG02965.hp1 HG02970.hp1 HG02970.hp2 HG02976.hp1 HG03017.hp1 HG03041.hp1 HG03130.hp2 HG03139.hp1 HG03139.hp2 HG03195.hp1 HG03209.hp1 HG03239.hp1 HG03239.hp2 HG03453.hp2 HG03486.hp1 HG03486.hp2 HG03516.hp1 HG03579.hp1 HG03579.hp2 HG03669.hp2 HG03688.hp2 HG03710.hp1 HG03927.hp1 HG04115.hp1 HG04204.hp2 HG04228.hp1 NA18522.hp1 NA18939.hp1 NA18941.hp2 NA18949.hp1 NA18950.hp1 NA18954.hp1 NA18962.hp2 NA18963.hp2 NA18967.hp2 NA18973.hp1 NA18979.hp1 NA18988.hp1 NA18999.hp2 NA19000.hp1 NA19004.hp2 NA19005.hp2 NA19043.hp1 NA19054.hp2 NA19085.hp2 NA19240.hp1 NA20300.hp1 NA20300.hp2 NA20805.hp1 NA20905.hp2 NA21309.hp1 NA21309.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0001c0005 a0001c0006 others(12): Show a0001c0001 a0001c0005 a0001c0006 a0001c0009 a0001c0010 a0001c0011 a0001c0012 a0001c0018 a0002c0002 a0002c0003 a0002c0004 a0002c0007 a0002c0008 a0002c0015 a0002c0019	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(57): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 a0001c0001t0005 a0001c0001t0006 a0001c0001t0008 a0001c0001t0012 a0001c0001t0013 a0001c0001t0014 a0001c0001t0015 a0001c0001t0016 a0001c0001t0017 a0001c0001t0025 a0001c0001t0026 a0001c0001t0027 a0001c0001t0046 a0001c0001t0049 a0001c0001t0050 a0001c0001t0051 a0001c0005t0001 a0001c0005t0002 a0001c0005t0034 a0001c0006t0003 a0001c0006t0024 a0001c0009t0001 a0001c0009t0015 a0001c0010t0004 a0001c0011t0005 a0001c0011t0033 a0001c0012t0003 a0001c0012t0004 a0001c0012t0016 a0001c0018t0012 a0002c0002t0001 a0002c0002t0002 a0002c0003t0001 a0002c0003t0002 a0002c0003t0003 a0002c0003t0004 a0002c0003t0007 a0002c0003t0008 a0002c0003t0014 a0002c0003t0029 a0002c0003t0030 a0002c0003t0038 a0002c0003t0041 a0002c0003t0042 a0002c0003t0043 a0002c0003t0045 a0002c0004t0001 a0002c0004t0009 a0002c0004t0016 a0002c0004t0019 a0002c0007t0002 a0002c0008t0001 a0002c0008t0002 a0002c0015t0003 a0002c0015t0031 a0002c0019t0011	a0001c0001t0001g0006 a0001c0001t0001g0047 a0001c0001t0001g0058 others(108): Show a0001c0001t0001g0006 a0001c0001t0001g0047 a0001c0001t0001g0058 a0001c0001t0001g0060 a0001c0001t0001g0229 a0001c0001t0001g0250 a0001c0001t0001g0251 a0001c0001t0001g0315 a0001c0001t0001g0319 a0001c0001t0001g0353 a0001c0001t0001g0354 a0001c0001t0001g0356 a0001c0001t0002g0118 a0001c0001t0002g0267 a0001c0001t0002g0278 a0001c0001t0002g0317 a0001c0001t0002g0355 a0001c0001t0003g0006 a0001c0001t0003g0096 a0001c0001t0003g0104 a0001c0001t0003g0108 a0001c0001t0003g0163 a0001c0001t0003g0295 a0001c0001t0003g0299 a0001c0001t0003g0303 a0001c0001t0003g0304 a0001c0001t0003g0310 a0001c0001t0003g0316 a0001c0001t0004g0164 a0001c0001t0004g0165 a0001c0001t0004g0249 a0001c0001t0004g0270 a0001c0001t0004g0281 a0001c0001t0004g0309 a0001c0001t0004g0321 a0001c0001t0005g0293 a0001c0001t0006g0010 a0001c0001t0006g0015 a0001c0001t0008g0181 a0001c0001t0008g0266 a0001c0001t0012g0342 a0001c0001t0013g0024 a0001c0001t0014g0280 a0001c0001t0015g0263 a0001c0001t0015g0352 a0001c0001t0016g0120 a0001c0001t0017g0284 a0001c0001t0025g0285 a0001c0001t0026g0190 a0001c0001t0027g0322 a0001c0001t0046g0092 a0001c0001t0049g0343 a0001c0001t0050g0277 a0001c0001t0051g0223 a0001c0005t0001g0265 a0001c0005t0002g0291 a0001c0005t0002g0292 a0001c0005t0034g0173 a0001c0006t0003g0344 a0001c0006t0024g0297 a0001c0009t0001g0032 a0001c0009t0001g0086 a0001c0009t0015g0224 a0001c0010t0004g0174 a0001c0011t0005g0300 a0001c0011t0005g0301 a0001c0011t0005g0302 a0001c0011t0005g0314 a0001c0011t0005g0318 a0001c0011t0033g0294 a0001c0012t0003g0340 a0001c0012t0004g0179 a0001c0012t0004g0257 a0001c0012t0004g0258 a0001c0012t0016g0313 a0001c0018t0012g0269 a0001c0018t0012g0341 a0002c0002t0001g0282 a0002c0002t0002g0225 a0002c0003t0001g0011 a0002c0003t0001g0043 a0002c0003t0001g0176 a0002c0003t0001g0218 a0002c0003t0002g0306 a0002c0003t0003g0296 a0002c0003t0003g0320 a0002c0003t0004g0271 a0002c0003t0004g0346 a0002c0003t0007g0021 a0002c0003t0008g0350 a0002c0003t0014g0259 a0002c0003t0029g0275 a0002c0003t0030g0305 a0002c0003t0038g0279 a0002c0003t0041g0312 a0002c0003t0042g0311 a0002c0003t0043g0276 a0002c0003t0045g0065 a0002c0004t0001g0059 a0002c0004t0001g0061 a0002c0004t0001g0307 a0002c0004t0009g0062 a0002c0004t0016g0119 a0002c0004t0019g0057 a0002c0007t0002g0012 a0002c0007t0002g0013 a0002c0008t0001g0208 a0002c0008t0002g0298 a0002c0015t0003g0339 a0002c0015t0031g0220 a0002c0019t0011g0345	112	372	0.3011	6	c.-20 others(21): Show c.-20-232_-20-227dupCCCCAG	CD82	ENSG00000085117.12	transcript	ENST00000227155.9	protein_coding	2/9		INFO_REALIGN_3_PRIME	chr11	TogoVar
CD82_chr11_44560663_44625358	44598400	A A	ATTTTTT ATTTTTT	intron_variant intron_variant	MODIFIER	HG00438.hp2 HG00544.hp1 HG00558.hp2 others(37): Show HG00438.hp2 HG00544.hp1 HG00558.hp2 HG00609.hp1 HG00741.hp1 HG01074.hp2 HG01123.hp1 HG01243.hp2 HG01346.hp2 HG01928.hp1 HG01993.hp1 HG01993.hp2 HG02004.hp1 HG02071.hp1 HG02074.hp1 HG02109.hp2 HG02258.hp1 HG02486.hp2 HG02523.hp1 HG02572.hp2 HG02615.hp1 HG02698.hp2 HG02738.hp1 HG02896.hp1 HG03017.hp1 HG03209.hp1 HG03239.hp1 HG03486.hp2 HG03710.hp1 HG03831.hp2 HG04228.hp2 NA18747.hp2 NA18957.hp2 NA18959.hp1 NA18967.hp1 NA18980.hp2 NA18988.hp2 NA19085.hp1 NA19086.hp1 NA19086.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0001c0006 a0001c0009 others(6): Show a0001c0001 a0001c0006 a0001c0009 a0001c0012 a0001c0014 a0002c0002 a0002c0003 a0002c0004 a0002c0008	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(26): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 a0001c0001t0015 a0001c0001t0016 a0001c0001t0025 a0001c0001t0026 a0001c0001t0051 a0001c0006t0002 a0001c0006t0003 a0001c0009t0002 a0001c0012t0004 a0001c0014t0003 a0002c0002t0001 a0002c0002t0002 a0002c0002t0003 a0002c0002t0007 a0002c0002t0023 a0002c0003t0001 a0002c0003t0002 a0002c0003t0003 a0002c0003t0004 a0002c0003t0030 a0002c0004t0001 a0002c0004t0019 a0002c0008t0001 a0002c0008t0002 a0002c0008t0010	a0001c0001t0001g0064 a0001c0001t0001g0251 a0001c0001t0002g0118 others(37): Show a0001c0001t0001g0064 a0001c0001t0001g0251 a0001c0001t0002g0118 a0001c0001t0002g0317 a0001c0001t0003g0310 a0001c0001t0003g0316 a0001c0001t0004g0249 a0001c0001t0015g0263 a0001c0001t0016g0120 a0001c0001t0025g0285 a0001c0001t0026g0190 a0001c0001t0051g0223 a0001c0006t0002g0151 a0001c0006t0003g0185 a0001c0009t0002g0129 a0001c0012t0004g0179 a0001c0014t0003g0128 a0002c0002t0001g0016 a0002c0002t0001g0042 a0002c0002t0001g0066 a0002c0002t0001g0127 a0002c0002t0001g0139 a0002c0002t0001g0159 a0002c0002t0002g0188 a0002c0002t0002g0225 a0002c0002t0003g0107 a0002c0002t0007g0028 a0002c0002t0023g0106 a0002c0003t0001g0067 a0002c0003t0002g0306 a0002c0003t0003g0320 a0002c0003t0004g0255 a0002c0003t0030g0305 a0002c0004t0001g0059 a0002c0004t0019g0039 a0002c0008t0001g0023 a0002c0008t0001g0124 a0002c0008t0002g0109 a0002c0008t0002g0145 a0002c0008t0010g0157	40	372	0.1075	6	c.64- others(21): Show c.64-1734_64-1729dupTTTTTT	CD82	ENSG00000085117.12	transcript	ENST00000227155.9	protein_coding	3/9		INFO_REALIGN_3_PRIME	chr11	TogoVar
CD82_chr11_44560663_44625358	44612623	A A	ATTTTTT ATTTTTT	intron_variant intron_variant	MODIFIER	HG00140.hp2 HG01346.hp2 HG02055.hp2 others(5): Show HG00140.hp2 HG01346.hp2 HG02055.hp2 HG02486.hp1 HG02572.hp2 HG02897.hp1 HG02922.hp2 HG03195.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0001c0009 a0001c0016 others(1): Show a0001c0001 a0001c0009 a0001c0016 a0002c0003	a0001c0001t0002 a0001c0001t0008 a0001c0009t0011 others(4): Show a0001c0001t0002 a0001c0001t0008 a0001c0009t0011 a0001c0016t0004 a0002c0003t0002 a0002c0003t0003 a0002c0003t0014	a0001c0001t0002g0317 a0001c0001t0008g0266 a0001c0009t0011g0264 others(5): Show a0001c0001t0002g0317 a0001c0001t0008g0266 a0001c0009t0011g0264 a0001c0016t0004g0351 a0002c0003t0002g0306 a0002c0003t0003g0256 a0002c0003t0003g0296 a0002c0003t0014g0259	8	372	0.0215	6	c.337 others(23): Show c.337-2627_337-2622dupTTTTTT	CD82	ENSG00000085117.12	transcript	ENST00000227155.9	protein_coding	6/9		INFO_REALIGN_3_PRIME	chr11	TogoVar
CD84_chr1_160536098_160584496	160543602	T T	TTTATTA TTTATTA	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG00639.hp1 HG02258.hp2 HG02451.hp1 others(12): Show HG00639.hp1 HG02258.hp2 HG02451.hp1 HG02717.hp1 HG02886.hp1 HG02896.hp2 HG02970.hp1 HG03130.hp1 HG03834.hp2 HG04115.hp1 NA18906.hp1 NA18906.hp2 NA18942.hp1 NA18967.hp2 NA19072.hp1	a0001 a0005 a0001 a0005	a0001c0001 a0005c0007 a0001c0001 a0005c0007	a0001c0001t0012 a0001c0001t0028 a0001c0001t0031 others(7): Show a0001c0001t0012 a0001c0001t0028 a0001c0001t0031 a0001c0001t0041 a0001c0001t0044 a0001c0001t0047 a0001c0001t0066 a0001c0001t0085 a0001c0001t0088 a0005c0007t0054	a0001c0001t0012g0019 a0001c0001t0012g0137 a0001c0001t0028g0038 others(8): Show a0001c0001t0012g0019 a0001c0001t0012g0137 a0001c0001t0028g0038 a0001c0001t0031g0022 a0001c0001t0041g0125 a0001c0001t0044g0145 a0001c0001t0047g0127 a0001c0001t0066g0066 a0001c0001t0085g0071 a0001c0001t0088g0077 a0005c0007t0054g0212	15	380	0.0395	6	c.46 others(17): Show c.4648_*4653dupTAATAA	CD84	ENSG00000066294.15	transcript	ENST00000368054.8	protein_coding	7/7	4653		chr1	TogoVar
CD84_chr1_160536098_160584496	160543624	T T	TTATTAC TTATTAC	3_prime_UTR_variant 3_prime_UTR_variant	MODIFIER	HG00544.hp2 HG00639.hp2 HG01361.hp1 others(27): Show HG00544.hp2 HG00639.hp2 HG01361.hp1 HG01943.hp1 HG01952.hp1 HG01975.hp1 HG01978.hp2 HG01993.hp1 HG02080.hp1 HG02145.hp1 HG02922.hp2 HG02970.hp2 HG03130.hp2 NA18612.hp2 NA18942.hp2 NA18944.hp2 NA18955.hp1 NA18962.hp2 NA18982.hp2 NA18987.hp2 NA18993.hp2 NA18995.hp2 NA19004.hp1 NA19012.hp1 NA19030.hp1 NA19043.hp1 NA19056.hp2 NA19068.hp1 NA19240.hp1 NA20300.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0004 a0001c0001t0024 a0001c0001t0036 others(3): Show a0001c0001t0004 a0001c0001t0024 a0001c0001t0036 a0001c0001t0037 a0001c0001t0052 a0001c0001t0053	a0001c0001t0004g0005 a0001c0001t0004g0013 a0001c0001t0004g0020 others(13): Show a0001c0001t0004g0005 a0001c0001t0004g0013 a0001c0001t0004g0020 a0001c0001t0004g0051 a0001c0001t0004g0053 a0001c0001t0004g0054 a0001c0001t0004g0056 a0001c0001t0004g0159 a0001c0001t0004g0214 a0001c0001t0004g0215 a0001c0001t0004g0216 a0001c0001t0024g0037 a0001c0001t0036g0217 a0001c0001t0037g0219 a0001c0001t0052g0218 a0001c0001t0053g0055	30	380	0.0790	6	c.46 others(17): Show c.4631_*4632insGTAATA	CD84	ENSG00000066294.15	transcript	ENST00000368054.8	protein_coding	7/7	4631		chr1	TogoVar
CD84_chr1_160536098_160584496	160575494	A A	AACACAC AACACAC	intron_variant intron_variant	MODIFIER	HG02451.hp1 HG02486.hp1 HG02647.hp1 others(7): Show HG02451.hp1 HG02486.hp1 HG02647.hp1 HG02717.hp1 HG02723.hp1 HG02723.hp2 HG02818.hp2 HG03209.hp2 HG03704.hp1 NA18906.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0012 a0001c0001t0026 others(5): Show a0001c0001t0001 a0001c0001t0012 a0001c0001t0026 a0001c0001t0034 a0001c0001t0058 a0001c0001t0060 a0001c0001t0065 a0001c0001t0083	a0001c0001t0001g0144 a0001c0001t0012g0019 a0001c0001t0026g0229 others(5): Show a0001c0001t0001g0144 a0001c0001t0012g0019 a0001c0001t0026g0229 a0001c0001t0034g0112 a0001c0001t0058g0059 a0001c0001t0060g0060 a0001c0001t0065g0230 a0001c0001t0083g0140	10	380	0.0263	6	c.46+ others(21): Show c.46+3892_46+3897dupGTGTGT	CD84	ENSG00000066294.15	transcript	ENST00000368054.8	protein_coding	1/6			chr1	TogoVar
CD86_chr3_122050362_122126136	122101509	A A	AATATAT AATATAT	intron_variant intron_variant	MODIFIER	HG02080.hp1 HG02257.hp2 HG02486.hp2 others(5): Show HG02080.hp1 HG02257.hp2 HG02486.hp2 HG03669.hp2 HG04199.hp2 NA19009.hp2 NA19067.hp1 NA20300.hp1	a0001 a0002 a0003 others(1): Show a0001 a0002 a0003 a0006	a0001c0001 a0002c0002 a0003c0003 others(1): Show a0001c0001 a0002c0002 a0003c0003 a0006c0005	a0001c0001t0001 a0001c0001t0003 a0002c0002t0002 others(2): Show a0001c0001t0001 a0001c0001t0003 a0002c0002t0002 a0003c0003t0001 a0006c0005t0002	a0001c0001t0001g0250 a0001c0001t0003g0012 a0002c0002t0002g0190 others(4): Show a0001c0001t0001g0250 a0001c0001t0003g0012 a0002c0002t0002g0190 a0002c0002t0002g0216 a0002c0002t0002g0232 a0003c0003t0001g0195 a0006c0005t0002g0179	8	304	0.0263	6	c.65- others(21): Show c.65-2002_65-2001insTATATA	CD86	ENSG00000114013.16	transcript	ENST00000330540.7	protein_coding	2/6		INFO_REALIGN_3_PRIME	chr3	TogoVar
CD86_chr3_122050362_122126136	122101511	A A	AATATAT AATATAT	intron_variant intron_variant	MODIFIER	HG00738.hp2 HG00741.hp1 HG01099.hp2 others(8): Show HG00738.hp2 HG00741.hp1 HG01099.hp2 HG01167.hp1 HG01243.hp1 HG01256.hp2 HG01257.hp2 HG02148.hp1 NA18942.hp2 NA18989.hp1 NA19060.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0002c0002 a0001c0001 a0002c0002	a0001c0001t0003 a0002c0002t0002 a0002c0002t0006 a0001c0001t0003 a0002c0002t0002 a0002c0002t0006	a0001c0001t0003g0069 a0001c0001t0003g0284 a0002c0002t0002g0175 others(8): Show a0001c0001t0003g0069 a0001c0001t0003g0284 a0002c0002t0002g0175 a0002c0002t0002g0183 a0002c0002t0002g0186 a0002c0002t0002g0188 a0002c0002t0002g0244 a0002c0002t0002g0247 a0002c0002t0006g0184 a0002c0002t0006g0185 a0002c0002t0006g0187	11	304	0.0362	6	c.65- others(21): Show c.65-2000_65-1999insTATATA	CD86	ENSG00000114013.16	transcript	ENST00000330540.7	protein_coding	2/6		INFO_REALIGN_3_PRIME	chr3	TogoVar
CD86_chr3_122050362_122126136	122106840	G G	GCACACA GCACACA	intron_variant intron_variant	MODIFIER	HG00423.hp1 HG00438.hp2 HG00544.hp1 others(38): Show HG00423.hp1 HG00438.hp2 HG00544.hp1 HG00544.hp2 HG00558.hp1 HG00738.hp1 HG01123.hp2 HG01361.hp1 HG01943.hp2 HG01978.hp1 HG02080.hp1 HG02602.hp1 HG02738.hp2 HG03239.hp2 HG04228.hp2 NA18944.hp2 NA18950.hp2 NA18956.hp2 NA18957.hp1 NA18967.hp2 NA18971.hp1 NA18974.hp1 NA18981.hp1 NA18989.hp1 NA18989.hp2 NA18995.hp2 NA19000.hp1 NA19004.hp1 NA19009.hp1 NA19009.hp2 NA19060.hp1 NA19063.hp1 NA19064.hp2 NA19066.hp1 NA19067.hp2 NA19072.hp2 NA19076.hp1 NA19077.hp2 NA19082.hp1 NA19084.hp2 NA19085.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0002c0002 a0002c0004 others(1): Show a0001c0001 a0002c0002 a0002c0004 a0002c0006	a0001c0001t0010 a0001c0001t0013 a0002c0002t0001 others(4): Show a0001c0001t0010 a0001c0001t0013 a0002c0002t0001 a0002c0002t0002 a0002c0002t0005 a0002c0004t0002 a0002c0006t0002	a0001c0001t0010g0051 a0001c0001t0013g0062 a0002c0002t0001g0131 others(37): Show a0001c0001t0010g0051 a0001c0001t0013g0062 a0002c0002t0001g0131 a0002c0002t0002g0014 a0002c0002t0002g0022 a0002c0002t0002g0055 a0002c0002t0002g0072 a0002c0002t0002g0101 a0002c0002t0002g0102 a0002c0002t0002g0168 a0002c0002t0002g0175 a0002c0002t0002g0192 a0002c0002t0002g0202 a0002c0002t0002g0203 a0002c0002t0002g0214 a0002c0002t0002g0215 a0002c0002t0002g0216 a0002c0002t0002g0218 a0002c0002t0002g0219 a0002c0002t0002g0220 a0002c0002t0002g0221 a0002c0002t0002g0222 a0002c0002t0002g0224 a0002c0002t0002g0226 a0002c0002t0002g0229 a0002c0002t0002g0230 a0002c0002t0002g0232 a0002c0002t0002g0240 a0002c0002t0002g0247 a0002c0002t0002g0248 a0002c0002t0002g0249 a0002c0002t0002g0270 a0002c0002t0002g0273 a0002c0002t0002g0274 a0002c0002t0002g0279 a0002c0002t0002g0280 a0002c0002t0005g0217 a0002c0004t0002g0271 a0002c0004t0002g0277 a0002c0006t0002g0278	41	304	0.1349	6	c.703 others(21): Show c.703+366_703+371dupACACAC	CD86	ENSG00000114013.16	transcript	ENST00000330540.7	protein_coding	4/6		INFO_REALIGN_3_PRIME	chr3	TogoVar
CD8A_chr2_86779610_86795913	86787898	A A	AGAGTGT AGAGTGT	intron_variant intron_variant	MODIFIER	HG02055.hp1 HG02055.hp2 HG02257.hp2 others(16): Show HG02055.hp1 HG02055.hp2 HG02257.hp2 HG02486.hp2 HG02572.hp2 HG02630.hp2 HG02886.hp1 HG02896.hp1 HG03098.hp2 HG03209.hp2 HG03225.hp1 HG03540.hp1 NA18952.hp1 NA18987.hp1 NA19011.hp1 NA19079.hp1 NA19079.hp2 NA19084.hp2 NA21309.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0001 a0001c0002t0002 a0001c0001t0001 a0001c0002t0002	a0001c0001t0001g0005 a0001c0001t0001g0021 a0001c0001t0001g0087 others(2): Show a0001c0001t0001g0005 a0001c0001t0001g0021 a0001c0001t0001g0087 a0001c0001t0001g0088 a0001c0002t0002g0052	19	378	0.0503	6	c.656 others(21): Show c.656+631_656+632insACACTC	CD8A	ENSG00000153563.17	transcript	ENST00000283635.8	protein_coding	5/5			chr2	TogoVar
CD8A_chr2_86779610_86795913	86789799	G G	GCACCCC GCACCCC	intron_variant intron_variant	MODIFIER	HG00738.hp1 HG00741.hp1 HG01123.hp2 others(2): Show HG00738.hp1 HG00741.hp1 HG01123.hp2 HG02486.hp1 NA19043.hp2	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0003 a0001c0003t0003	a0001c0003t0003g0027 a0001c0003t0003g0028 a0001c0003t0003g0044 a0001c0003t0003g0027 a0001c0003t0003g0028 a0001c0003t0003g0044	5	378	0.0132	6	c.404 others(19): Show c.404-50_404-49insGGGGTG	CD8A	ENSG00000153563.17	transcript	ENST00000283635.8	protein_coding	2/5			chr2	TogoVar
CD8A_chr2_86779610_86795913	86789799	G G	GCGCCCC GCGCCCC	intron_variant intron_variant	MODIFIER	HG00099.hp2 HG00423.hp1 HG00544.hp1 others(73): Show HG00099.hp2 HG00423.hp1 HG00544.hp1 HG00609.hp2 HG00621.hp1 HG00738.hp2 HG01069.hp1 HG01074.hp1 HG01099.hp2 HG01109.hp2 HG01261.hp2 HG01496.hp2 HG01517.hp2 HG01943.hp1 HG01978.hp1 HG02055.hp1 HG02056.hp1 HG02074.hp2 HG02109.hp2 HG02129.hp1 HG02280.hp1 HG02280.hp2 HG02300.hp1 HG02451.hp1 HG02572.hp1 HG02602.hp1 HG02615.hp1 HG02622.hp2 HG02809.hp2 HG02965.hp2 HG02970.hp1 HG02976.hp2 HG03041.hp1 HG03098.hp1 HG03209.hp1 HG03471.hp1 HG03579.hp1 HG03942.hp2 HG06807.hp1 NA18522.hp2 NA18747.hp2 NA18906.hp2 NA18943.hp2 NA18944.hp1 NA18946.hp2 NA18950.hp2 NA18955.hp1 NA18967.hp1 NA18968.hp2 NA18971.hp2 NA18973.hp2 NA18975.hp2 NA18978.hp2 NA18983.hp1 NA18985.hp2 NA18986.hp1 NA18987.hp2 NA19002.hp2 NA19003.hp2 NA19005.hp1 NA19010.hp2 NA19056.hp1 NA19060.hp1 NA19064.hp2 NA19065.hp2 NA19078.hp1 NA19080.hp1 NA19082.hp1 NA19087.hp1 NA19088.hp1 NA19091.hp1 NA20129.hp2 NA20300.hp1 NA20300.hp2 NA20805.hp1 NA20905.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0003 others(2): Show a0001c0001 a0001c0002 a0001c0003 a0001c0005 a0001c0007	a0001c0001t0002 a0001c0001t0012 a0001c0001t0013 others(7): Show a0001c0001t0002 a0001c0001t0012 a0001c0001t0013 a0001c0002t0002 a0001c0003t0004 a0001c0003t0008 a0001c0005t0001 a0001c0005t0007 a0001c0005t0011 a0001c0007t0002	a0001c0001t0002g0004 a0001c0001t0002g0016 a0001c0001t0002g0017 others(32): Show a0001c0001t0002g0004 a0001c0001t0002g0016 a0001c0001t0002g0017 a0001c0001t0002g0033 a0001c0001t0002g0045 a0001c0001t0002g0061 a0001c0001t0002g0062 a0001c0001t0002g0063 a0001c0001t0002g0064 a0001c0001t0002g0065 a0001c0001t0012g0060 a0001c0001t0013g0120 a0001c0002t0002g0008 a0001c0002t0002g0014 a0001c0002t0002g0015 a0001c0002t0002g0031 a0001c0002t0002g0032 a0001c0002t0002g0051 a0001c0002t0002g0052 a0001c0002t0002g0053 a0001c0002t0002g0054 a0001c0002t0002g0055 a0001c0002t0002g0056 a0001c0002t0002g0057 a0001c0002t0002g0058 a0001c0002t0002g0059 a0001c0003t0004g0026 a0001c0003t0004g0041 a0001c0003t0004g0042 a0001c0003t0008g0043 a0001c0005t0001g0049 a0001c0005t0007g0047 a0001c0005t0007g0050 a0001c0005t0011g0048 a0001c0007t0002g0046	76	378	0.2011	6	c.404 others(19): Show c.404-55_404-50dupGGGGCG	CD8A	ENSG00000153563.17	transcript	ENST00000283635.8	protein_coding	2/5			chr2	TogoVar
CD8B2_chr2_106482364_106516095	106502294	C C	CAAAAAA CAAAAAA	intron_variant intron_variant	MODIFIER	HG00735.hp1 HG01109.hp2 HG01255.hp2 others(9): Show HG00735.hp1 HG01109.hp2 HG01255.hp2 HG01361.hp2 HG01515.hp2 HG02056.hp2 HG02965.hp2 HG03139.hp1 HG03471.hp1 HG03471.hp2 NA18522.hp1 NA18522.hp2	a0002 a0002	a0002c0003 a0002c0003	a0002c0003t0003 a0002c0003t0008 a0002c0003t0010 a0002c0003t0003 a0002c0003t0008 a0002c0003t0010	a0002c0003t0003g0026 a0002c0003t0003g0036 a0002c0003t0003g0058 others(6): Show a0002c0003t0003g0026 a0002c0003t0003g0036 a0002c0003t0003g0058 a0002c0003t0003g0063 a0002c0003t0003g0064 a0002c0003t0003g0065 a0002c0003t0003g0077 a0002c0003t0008g0109 a0002c0003t0010g0068	12	350	0.0343	6	c.494 others(21): Show c.494-160_494-155dupAAAAAA	CD8B2	ENSG00000254126.8	transcript	ENST00000643224.2	protein_coding	3/5		INFO_REALIGN_3_PRIME	chr2	TogoVar
CD96_chr3_111537197_111657372	111546919	T T	TACACAC TACACAC	intron_variant intron_variant	MODIFIER	HG02055.hp2 HG02451.hp2 HG02647.hp2 others(1): Show HG02055.hp2 HG02451.hp2 HG02647.hp2 HG03540.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0006 a0001c0001t0023 others(1): Show a0001c0001t0003 a0001c0001t0006 a0001c0001t0023 a0001c0001t0024	a0001c0001t0003g0074 a0001c0001t0006g0073 a0001c0001t0023g0057 others(1): Show a0001c0001t0003g0074 a0001c0001t0006g0073 a0001c0001t0023g0057 a0001c0001t0024g0058	4	300	0.0133	6	c.418 others(23): Show c.418+1540_418+1545dupACACAC	CD96	ENSG00000153283.13	transcript	ENST00000352690.9	protein_coding	2/13		INFO_REALIGN_3_PRIME	chr3	TogoVar
CD99L2_chrX_150761336_150903668	150765112	T T	TTAAAAG TTAAAAG	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00099.hp1 HG00140.hp1 HG01099.hp1 others(4): Show HG00099.hp1 HG00140.hp1 HG01099.hp1 HG01168.hp1 HG03239.hp2 HG03471.hp1 NA20805.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0006 a0001c0001t0010 a0001c0001t0006 a0001c0001t0010	a0001c0001t0006g0046 a0001c0001t0006g0082 a0001c0001t0006g0095 others(4): Show a0001c0001t0006g0046 a0001c0001t0006g0082 a0001c0001t0006g0095 a0001c0001t0006g0191 a0001c0001t0010g0019 a0001c0001t0010g0179 a0001c0001t0010g0185	7	212	0.0330	6	c.39 others(17): Show c.3921_*3922insCTTTTA	CD99L2	ENSG00000102181.22	transcript	ENST00000370377.8	protein_coding		1223		chrX	TogoVar
CD99L2_chrX_150761336_150903668	150778681	A A	AATATAT AATATAT	intron_variant intron_variant	MODIFIER	HG02258.hp1 HG02258.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0005 a0001c0001t0005	a0001c0001t0005g0203 a0001c0001t0005g0203	1	212	0.0047	6	c.497 others(23): Show c.497-1200_497-1199insATATAT	CD99L2	ENSG00000102181.22	transcript	ENST00000370377.8	protein_coding	7/10			chrX	TogoVar
CD99L2_chrX_150761336_150903668	150787888	G G	GTATATA GTATATA	intron_variant intron_variant	MODIFIER	HG01168.hp2 HG02083.hp1 NA18970.hp1 HG01168.hp2 HG02083.hp1 NA18970.hp1	a0001 a0003 a0001 a0003	a0001c0001 a0003c0004 a0001c0001 a0003c0004	a0001c0001t0001 a0001c0001t0002 a0003c0004t0042 a0001c0001t0001 a0001c0001t0002 a0003c0004t0042	a0001c0001t0001g0091 a0001c0001t0002g0054 a0003c0004t0042g0209 a0001c0001t0001g0091 a0001c0001t0002g0054 a0003c0004t0042g0209	3	212	0.0142	6	c.496 others(23): Show c.496+5797_496+5802dupTATATA	CD99L2	ENSG00000102181.22	transcript	ENST00000370377.8	protein_coding	7/10			chrX	TogoVar
CD99L2_chrX_150761336_150903668	150824174	G G	GAGGAGA GAGGAGA	intron_variant intron_variant	MODIFIER	NA18971.hp1 NA18971.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0123 a0001c0001t0001g0123	1	212	0.0047	6	c.130 others(23): Show c.130+7056_130+7057insTCTCCT	CD99L2	ENSG00000102181.22	transcript	ENST00000370377.8	protein_coding	2/10			chrX	TogoVar
CD99L2_chrX_150761336_150903668	150824177	A A	AAGGAGG AAGGAGG	intron_variant intron_variant	MODIFIER	HG00099.hp2 HG00280.hp1 HG00323.hp2 others(62): Show HG00099.hp2 HG00280.hp1 HG00323.hp2 HG00408.hp1 HG00438.hp1 HG00642.hp1 HG00735.hp2 HG00738.hp1 HG00741.hp2 HG01070.hp1 HG01081.hp2 HG01109.hp1 HG01168.hp2 HG01192.hp1 HG01243.hp1 HG01255.hp1 HG01496.hp2 HG01516.hp1 HG01517.hp1 HG01884.hp2 HG02055.hp1 HG02109.hp1 HG02145.hp1 HG02257.hp1 HG02280.hp1 HG02280.hp2 HG02451.hp1 HG02559.hp1 HG02559.hp2 HG02602.hp1 HG02615.hp1 HG02630.hp1 HG02630.hp2 HG02647.hp1 HG02723.hp1 HG02723.hp2 HG02886.hp1 HG02886.hp2 HG02895.hp1 HG02896.hp2 HG02965.hp1 HG03041.hp2 HG03098.hp1 HG03209.hp1 HG03486.hp2 HG03516.hp2 HG03579.hp1 HG03669.hp2 HG04115.hp1 HG06807.hp2 NA18522.hp1 NA18906.hp1 NA18969.hp2 NA18979.hp2 NA18981.hp1 NA18986.hp1 NA19030.hp1 NA19043.hp1 NA19064.hp2 NA19240.hp1 NA19240.hp2 NA20129.hp2 NA20300.hp2 NA20905.hp1 NA21309.hp2	a0001 a0003 a0001 a0003	a0001c0001 a0001c0002 a0001c0005 others(1): Show a0001c0001 a0001c0002 a0001c0005 a0003c0004	a0001c0001t0001 a0001c0001t0002 a0001c0001t0004 others(25): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0004 a0001c0001t0005 a0001c0001t0006 a0001c0001t0007 a0001c0001t0008 a0001c0001t0009 a0001c0001t0011 a0001c0001t0013 a0001c0001t0014 a0001c0001t0015 a0001c0001t0016 a0001c0001t0017 a0001c0001t0019 a0001c0001t0023 a0001c0001t0025 a0001c0001t0028 a0001c0001t0036 a0001c0001t0037 a0001c0001t0038 a0001c0001t0039 a0001c0001t0043 a0001c0001t0044 a0001c0002t0001 a0001c0002t0002 a0001c0005t0001 a0003c0004t0042	a0001c0001t0001g0007 a0001c0001t0001g0008 a0001c0001t0001g0014 others(62): Show a0001c0001t0001g0007 a0001c0001t0001g0008 a0001c0001t0001g0014 a0001c0001t0001g0015 a0001c0001t0001g0018 a0001c0001t0001g0037 a0001c0001t0001g0077 a0001c0001t0001g0110 a0001c0001t0001g0111 a0001c0001t0001g0134 a0001c0001t0001g0162 a0001c0001t0001g0193 a0001c0001t0002g0012 a0001c0001t0002g0013 a0001c0001t0002g0016 a0001c0001t0002g0017 a0001c0001t0002g0039 a0001c0001t0002g0042 a0001c0001t0002g0112 a0001c0001t0002g0137 a0001c0001t0002g0138 a0001c0001t0002g0140 a0001c0001t0004g0011 a0001c0001t0005g0133 a0001c0001t0006g0044 a0001c0001t0007g0196 a0001c0001t0007g0197 a0001c0001t0007g0198 a0001c0001t0007g0204 a0001c0001t0008g0139 a0001c0001t0008g0142 a0001c0001t0008g0161 a0001c0001t0008g0168 a0001c0001t0009g0180 a0001c0001t0009g0195 a0001c0001t0011g0163 a0001c0001t0011g0164 a0001c0001t0011g0171 a0001c0001t0013g0038 a0001c0001t0013g0071 a0001c0001t0013g0078 a0001c0001t0014g0159 a0001c0001t0014g0160 a0001c0001t0014g0172 a0001c0001t0015g0135 a0001c0001t0016g0072 a0001c0001t0016g0073 a0001c0001t0017g0020 a0001c0001t0017g0194 a0001c0001t0019g0174 a0001c0001t0023g0005 a0001c0001t0025g0144 a0001c0001t0028g0074 a0001c0001t0036g0145 a0001c0001t0037g0143 a0001c0001t0038g0136 a0001c0001t0039g0170 a0001c0001t0043g0211 a0001c0001t0044g0210 a0001c0002t0001g0009 a0001c0002t0001g0026 a0001c0002t0001g0173 a0001c0002t0002g0010 a0001c0005t0001g0130 a0003c0004t0042g0209	65	212	0.3066	6	c.130 others(23): Show c.130+7048_130+7053dupCCTCCT	CD99L2	ENSG00000102181.22	transcript	ENST00000370377.8	protein_coding	2/10			chrX	TogoVar
CD99L2_chrX_150761336_150903668	150824183	G G	GAGGAGA GAGGAGA	intron_variant intron_variant	MODIFIER	HG01884.hp1 HG01884.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0115 a0001c0001t0001g0115	1	212	0.0047	6	c.130 others(23): Show c.130+7047_130+7048insTCTCCT	CD99L2	ENSG00000102181.22	transcript	ENST00000370377.8	protein_coding	2/10			chrX	TogoVar
CD99L2_chrX_150761336_150903668	150824361	G G	GGAAGAA GGAAGAA	intron_variant intron_variant	MODIFIER	HG02451.hp1 NA18522.hp1 NA19043.hp1 others(1): Show HG02451.hp1 NA18522.hp1 NA19043.hp1 NA20129.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0008 a0001c0001t0019 a0001c0002t0001 a0001c0001t0008 a0001c0001t0019 a0001c0002t0001	a0001c0001t0008g0161 a0001c0001t0008g0168 a0001c0001t0019g0174 others(1): Show a0001c0001t0008g0161 a0001c0001t0008g0168 a0001c0001t0019g0174 a0001c0002t0001g0173	4	212	0.0189	6	c.130 others(23): Show c.130+6864_130+6869dupTTCTTC	CD99L2	ENSG00000102181.22	transcript	ENST00000370377.8	protein_coding	2/10			chrX	TogoVar
CD99L2_chrX_150761336_150903668	150824425	G G	GAGAAGA GAGAAGA	intron_variant intron_variant	MODIFIER	HG03516.hp1 HG03516.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0001 a0001c0002t0001	a0001c0002t0001g0201 a0001c0002t0001g0201	1	212	0.0047	6	c.130 others(23): Show c.130+6800_130+6805dupTCTTCT	CD99L2	ENSG00000102181.22	transcript	ENST00000370377.8	protein_coding	2/10			chrX	TogoVar
CD99L2_chrX_150761336_150903668	150824464	A A	AAAGAAG AAAGAAG	intron_variant intron_variant	MODIFIER	HG01070.hp2 HG01070.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0086 a0001c0001t0001g0086	1	212	0.0047	6	c.130 others(23): Show c.130+6761_130+6766dupCTTCTT	CD99L2	ENSG00000102181.22	transcript	ENST00000370377.8	protein_coding	2/10			chrX	TogoVar
CD99L2_chrX_150761336_150903668	150824683	A A	AGAGGAG AGAGGAG	intron_variant intron_variant	MODIFIER	HG03041.hp2 HG03041.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0008 a0001c0001t0008	a0001c0001t0008g0142 a0001c0001t0008g0142	1	212	0.0047	6	c.130 others(23): Show c.130+6547_130+6548insCTCCTC	CD99L2	ENSG00000102181.22	transcript	ENST00000370377.8	protein_coding	2/10			chrX	TogoVar
CD99L2_chrX_150761336_150903668	150824707	G G	GGAAGAA GGAAGAA	intron_variant intron_variant	MODIFIER	HG00140.hp1 HG00323.hp1 HG00438.hp2 others(121): Show HG00140.hp1 HG00323.hp1 HG00438.hp2 HG00609.hp1 HG00621.hp1 HG00735.hp1 HG00741.hp1 HG01069.hp1 HG01070.hp2 HG01074.hp1 HG01081.hp1 HG01106.hp1 HG01167.hp1 HG01256.hp1 HG01258.hp1 HG01261.hp1 HG01358.hp1 HG01433.hp1 HG01496.hp1 HG01515.hp1 HG01516.hp2 HG01517.hp2 HG01884.hp1 HG01928.hp1 HG01943.hp1 HG01952.hp1 HG01978.hp1 HG01978.hp2 HG02015.hp1 HG02027.hp1 HG02040.hp1 HG02071.hp1 HG02074.hp1 HG02109.hp1 HG02109.hp2 HG02132.hp1 HG02135.hp1 HG02300.hp1 HG02451.hp2 HG02486.hp1 HG02572.hp1 HG02698.hp1 HG02735.hp1 HG02886.hp2 HG03130.hp1 HG03139.hp1 HG03225.hp1 HG03239.hp2 HG03490.hp1 HG03492.hp1 HG03540.hp1 HG03540.hp2 HG03654.hp1 HG03669.hp1 HG03669.hp2 HG03688.hp1 HG03710.hp1 HG03831.hp2 HG04199.hp1 HG04204.hp1 HG04228.hp1 HG06807.hp1 NA18612.hp1 NA18747.hp1 NA18906.hp2 NA18940.hp1 NA18943.hp1 NA18944.hp1 NA18945.hp1 NA18948.hp1 NA18952.hp1 NA18953.hp1 NA18955.hp1 NA18960.hp1 NA18961.hp1 NA18962.hp1 NA18966.hp1 NA18967.hp1 NA18969.hp1 NA18970.hp1 NA18971.hp1 NA18977.hp1 NA18979.hp1 NA18981.hp2 NA18982.hp1 NA18983.hp1 NA18984.hp1 NA18988.hp1 NA18989.hp1 NA18990.hp1 NA18994.hp1 NA18995.hp1 NA19000.hp1 NA19004.hp1 NA19005.hp1 NA19007.hp1 NA19009.hp1 NA19012.hp1 NA19030.hp2 NA19056.hp1 NA19058.hp1 NA19060.hp1 NA19062.hp1 NA19063.hp1 NA19064.hp1 NA19066.hp1 NA19067.hp1 NA19068.hp1 NA19072.hp1 NA19076.hp1 NA19079.hp1 NA19083.hp1 NA19085.hp1 NA19086.hp1 NA19088.hp1 NA19089.hp1 NA19091.hp1 NA19240.hp1 NA20129.hp1 NA20752.hp1 NA20805.hp1 NA20905.hp1 NA21309.hp1 homoSapiens_chm13v2.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0005 a0001c0001 a0001c0002 a0001c0005	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(21): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 a0001c0001t0005 a0001c0001t0006 a0001c0001t0009 a0001c0001t0012 a0001c0001t0013 a0001c0001t0015 a0001c0001t0018 a0001c0001t0020 a0001c0001t0021 a0001c0001t0027 a0001c0001t0029 a0001c0001t0030 a0001c0001t0031 a0001c0001t0032 a0001c0001t0033 a0001c0001t0034 a0001c0001t0041 a0001c0001t0043 a0001c0002t0001 a0001c0005t0001	a0001c0001t0001g0001 a0001c0001t0001g0002 a0001c0001t0001g0003 others(120): Show a0001c0001t0001g0001 a0001c0001t0001g0002 a0001c0001t0001g0003 a0001c0001t0001g0004 a0001c0001t0001g0021 a0001c0001t0001g0022 a0001c0001t0001g0023 a0001c0001t0001g0024 a0001c0001t0001g0029 a0001c0001t0001g0030 a0001c0001t0001g0031 a0001c0001t0001g0032 a0001c0001t0001g0033 a0001c0001t0001g0034 a0001c0001t0001g0036 a0001c0001t0001g0040 a0001c0001t0001g0041 a0001c0001t0001g0043 a0001c0001t0001g0048 a0001c0001t0001g0049 a0001c0001t0001g0050 a0001c0001t0001g0055 a0001c0001t0001g0056 a0001c0001t0001g0057 a0001c0001t0001g0058 a0001c0001t0001g0059 a0001c0001t0001g0061 a0001c0001t0001g0062 a0001c0001t0001g0063 a0001c0001t0001g0065 a0001c0001t0001g0069 a0001c0001t0001g0070 a0001c0001t0001g0075 a0001c0001t0001g0079 a0001c0001t0001g0080 a0001c0001t0001g0083 a0001c0001t0001g0084 a0001c0001t0001g0086 a0001c0001t0001g0089 a0001c0001t0001g0090 a0001c0001t0001g0092 a0001c0001t0001g0096 a0001c0001t0001g0097 a0001c0001t0001g0101 a0001c0001t0001g0102 a0001c0001t0001g0106 a0001c0001t0001g0108 a0001c0001t0001g0109 a0001c0001t0001g0114 a0001c0001t0001g0115 a0001c0001t0001g0119 a0001c0001t0001g0121 a0001c0001t0001g0123 a0001c0001t0001g0124 a0001c0001t0001g0125 a0001c0001t0001g0126 a0001c0001t0001g0132 a0001c0001t0001g0153 a0001c0001t0001g0154 a0001c0001t0001g0155 a0001c0001t0001g0157 a0001c0001t0001g0165 a0001c0001t0001g0175 a0001c0001t0001g0183 a0001c0001t0001g0187 a0001c0001t0001g0192 a0001c0001t0001g0193 a0001c0001t0001g0205 a0001c0001t0001g0206 a0001c0001t0002g0027 a0001c0001t0002g0054 a0001c0001t0002g0068 a0001c0001t0002g0081 a0001c0001t0002g0087 a0001c0001t0002g0107 a0001c0001t0002g0118 a0001c0001t0003g0085 a0001c0001t0003g0098 a0001c0001t0003g0099 a0001c0001t0003g0103 a0001c0001t0003g0113 a0001c0001t0003g0120 a0001c0001t0003g0127 a0001c0001t0003g0131 a0001c0001t0003g0152 a0001c0001t0003g0156 a0001c0001t0003g0188 a0001c0001t0004g0035 a0001c0001t0004g0052 a0001c0001t0004g0064 a0001c0001t0004g0088 a0001c0001t0004g0093 a0001c0001t0004g0122 a0001c0001t0004g0199 a0001c0001t0005g0169 a0001c0001t0005g0200 a0001c0001t0006g0046 a0001c0001t0006g0082 a0001c0001t0006g0095 a0001c0001t0009g0147 a0001c0001t0012g0146 a0001c0001t0012g0207 a0001c0001t0013g0038 a0001c0001t0013g0071 a0001c0001t0015g0128 a0001c0001t0018g0104 a0001c0001t0018g0105 a0001c0001t0020g0025 a0001c0001t0020g0060 a0001c0001t0021g0117 a0001c0001t0021g0150 a0001c0001t0027g0151 a0001c0001t0029g0116 a0001c0001t0030g0045 a0001c0001t0031g0158 a0001c0001t0032g0182 a0001c0001t0033g0148 a0001c0001t0034g0028 a0001c0001t0041g0208 a0001c0001t0043g0211 a0001c0002t0001g0066 a0001c0002t0001g0181 a0001c0005t0001g0130	124	212	0.5849	6	c.130 others(23): Show c.130+6518_130+6523dupTTCTTC	CD99L2	ENSG00000102181.22	transcript	ENST00000370377.8	protein_coding	2/10			chrX	TogoVar
CD99L2_chrX_150761336_150903668	150825792	A A	AAAAATT AAAAATT	intron_variant intron_variant	MODIFIER	NA18974.hp1 NA18974.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0051 a0001c0001t0002g0051	1	212	0.0047	6	c.130 others(23): Show c.130+5433_130+5438dupAATTTT	CD99L2	ENSG00000102181.22	transcript	ENST00000370377.8	protein_coding	2/10			chrX	TogoVar
CD99L2_chrX_150761336_150903668	150856569	A A	AAATAAT AAATAAT	intron_variant intron_variant	MODIFIER	HG01934.hp1 HG02258.hp1 HG02896.hp1 HG01934.hp1 HG02258.hp1 HG02896.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0005 a0001c0001t0035 a0001c0001t0005 a0001c0001t0035	a0001c0001t0005g0202 a0001c0001t0005g0203 a0001c0001t0035g0167 a0001c0001t0005g0202 a0001c0001t0005g0203 a0001c0001t0035g0167	3	212	0.0142	6	c.68- others(23): Show c.68-25282_68-25277dupATTATT	CD99L2	ENSG00000102181.22	transcript	ENST00000370377.8	protein_coding	1/10			chrX	TogoVar
CD99L2_chrX_150761336_150903668	150861141	C C	CAAAAAA CAAAAAA	intron_variant intron_variant	MODIFIER	NA18981.hp1 NA20300.hp2 NA18981.hp1 NA20300.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0001 a0001c0002t0001 a0001c0001t0001 a0001c0002t0001	a0001c0001t0001g0015 a0001c0002t0001g0026 a0001c0001t0001g0015 a0001c0002t0001g0026	2	212	0.0094	6	c.68- others(23): Show c.68-29854_68-29849dupTTTTTT	CD99L2	ENSG00000102181.22	transcript	ENST00000370377.8	protein_coding	1/10			chrX	TogoVar
CD99L2_chrX_150761336_150903668	150862886	G G	GAAAAGA GAAAAGA	intron_variant intron_variant	MODIFIER	HG01884.hp1 HG01884.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0115 a0001c0001t0001g0115	1	212	0.0047	6	c.68- others(23): Show c.68-31594_68-31593insTCTTTT	CD99L2	ENSG00000102181.22	transcript	ENST00000370377.8	protein_coding	1/10			chrX	TogoVar
CD99L2_chrX_150761336_150903668	150868084	A A	AAATAAT AAATAAT	intron_variant intron_variant	MODIFIER	HG03130.hp1 NA18953.hp1 NA18979.hp1 HG03130.hp1 NA18953.hp1 NA18979.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0005 a0001c0001t0020 a0001c0001t0001 a0001c0001t0005 a0001c0001t0020	a0001c0001t0001g0089 a0001c0001t0005g0200 a0001c0001t0020g0060 a0001c0001t0001g0089 a0001c0001t0005g0200 a0001c0001t0020g0060	3	212	0.0142	6	c.67+ others(23): Show c.67+30432_67+30437dupATTATT	CD99L2	ENSG00000102181.22	transcript	ENST00000370377.8	protein_coding	1/10			chrX	TogoVar
CD99L2_chrX_150761336_150903668	150877959	T T	TACACAC TACACAC	intron_variant intron_variant	MODIFIER	HG00642.hp1 HG01192.hp1 HG02109.hp1 others(7): Show HG00642.hp1 HG01192.hp1 HG02109.hp1 HG02615.hp1 HG02886.hp1 HG03139.hp1 HG03225.hp1 HG06807.hp2 NA19030.hp1 NA19064.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0007 others(4): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0007 a0001c0001t0011 a0001c0001t0012 a0001c0001t0025 a0001c0001t0029	a0001c0001t0001g0193 a0001c0001t0002g0012 a0001c0001t0002g0013 others(7): Show a0001c0001t0001g0193 a0001c0001t0002g0012 a0001c0001t0002g0013 a0001c0001t0002g0016 a0001c0001t0007g0197 a0001c0001t0007g0198 a0001c0001t0011g0164 a0001c0001t0012g0207 a0001c0001t0025g0144 a0001c0001t0029g0116	10	212	0.0472	6	c.67+ others(23): Show c.67+20557_67+20562dupGTGTGT	CD99L2	ENSG00000102181.22	transcript	ENST00000370377.8	protein_coding	1/10			chrX	TogoVar
CD99L2_chrX_150761336_150903668	150897526	A A	AGTGTGT AGTGTGT	intron_variant intron_variant	MODIFIER	HG02109.hp1 HG02145.hp1 HG02647.hp1 others(3): Show HG02109.hp1 HG02145.hp1 HG02647.hp1 HG03486.hp2 HG06807.hp2 NA19030.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0007 a0001c0001t0009 others(1): Show a0001c0001t0001 a0001c0001t0007 a0001c0001t0009 a0001c0001t0017	a0001c0001t0001g0193 a0001c0001t0007g0196 a0001c0001t0007g0197 others(3): Show a0001c0001t0001g0193 a0001c0001t0007g0196 a0001c0001t0007g0197 a0001c0001t0007g0198 a0001c0001t0009g0195 a0001c0001t0017g0194	6	212	0.0283	6	c.67+ others(19): Show c.67+990_67+995dupACACAC	CD99L2	ENSG00000102181.22	transcript	ENST00000370377.8	protein_coding	1/10			chrX	TogoVar
CD99_chrX_2686295_2746309	2693150	G G	GTGGTTT GTGGTTT	intron_variant intron_variant	MODIFIER	HG01884.hp1 HG01981.hp1 HG02451.hp2 others(3): Show HG01884.hp1 HG01981.hp1 HG02451.hp2 HG06807.hp1 NA18985.hp1 NA18992.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0004 a0001c0001 a0001c0002 a0001c0004	a0001c0001t0001 a0001c0001t0003 a0001c0002t0001 others(1): Show a0001c0001t0001 a0001c0001t0003 a0001c0002t0001 a0001c0004t0002	a0001c0001t0001g0107 a0001c0001t0001g0108 a0001c0001t0003g0163 others(3): Show a0001c0001t0001g0107 a0001c0001t0001g0108 a0001c0001t0003g0163 a0001c0002t0001g0161 a0001c0002t0001g0162 a0001c0004t0002g0082	6	228	0.0263	6	c.67+ others(21): Show c.67+1724_67+1725insGGTTTT	CD99	ENSG00000002586.20	transcript	ENST00000381192.10	protein_coding	1/9		INFO_REALIGN_3_PRIME	chrX	TogoVar
CD99_chrX_2686295_2746309	2703605	A A	AGTGTGT AGTGTGT	intron_variant intron_variant	MODIFIER	HG02630.hp2 NA19077.hp2 NA19080.hp1 others(1): Show HG02630.hp2 NA19077.hp2 NA19080.hp1 NA19080.hp2	a0001 a0007 a0001 a0007	a0001c0001 a0001c0002 a0001c0006 others(1): Show a0001c0001 a0001c0002 a0001c0006 a0007c0016	a0001c0001t0001 a0001c0002t0001 a0001c0006t0001 others(1): Show a0001c0001t0001 a0001c0002t0001 a0001c0006t0001 a0007c0016t0001	a0001c0001t0001g0095 a0001c0002t0001g0110 a0001c0006t0001g0140 others(1): Show a0001c0001t0001g0095 a0001c0002t0001g0110 a0001c0006t0001g0140 a0007c0016t0001g0132	4	228	0.0175	6	c.68- others(23): Show c.68-10776_68-10771dupGTGTGT	CD99	ENSG00000002586.20	transcript	ENST00000381192.10	protein_coding	1/9		INFO_REALIGN_3_PRIME	chrX	TogoVar
CD99_chrX_2686295_2746309	2728916	A A	AACCTCC AACCTCC	intron_variant intron_variant	MODIFIER	HG00558.hp2 HG00597.hp1 HG00621.hp1 others(79): Show HG00558.hp2 HG00597.hp1 HG00621.hp1 HG00733.hp1 HG01070.hp1 HG01071.hp2 HG01168.hp1 HG01168.hp2 HG01169.hp1 HG01175.hp2 HG01257.hp2 HG01346.hp1 HG01884.hp1 HG01884.hp2 HG01891.hp1 HG01981.hp2 HG01993.hp2 HG02004.hp1 HG02080.hp2 HG02109.hp1 HG02148.hp2 HG02155.hp1 HG02165.hp1 HG02257.hp2 HG02273.hp1 HG02293.hp1 HG02451.hp1 HG02559.hp1 HG02559.hp2 HG02615.hp2 HG02622.hp2 HG02630.hp2 HG02723.hp1 HG02809.hp1 HG02818.hp1 HG02818.hp2 HG02886.hp2 HG02895.hp2 HG02896.hp1 HG02896.hp2 HG02897.hp1 HG02897.hp2 HG02922.hp1 HG02922.hp2 HG02976.hp1 HG02976.hp2 HG03041.hp2 HG03195.hp1 HG03195.hp2 HG03239.hp1 HG03453.hp1 HG03453.hp2 HG03486.hp1 HG03516.hp1 HG03516.hp2 HG03540.hp2 HG06807.hp1 HG06807.hp2 NA18906.hp2 NA18950.hp1 NA18950.hp2 NA18960.hp1 NA18969.hp1 NA18970.hp1 NA18979.hp1 NA18980.hp1 NA18981.hp2 NA18998.hp1 NA19030.hp2 NA19055.hp2 NA19064.hp2 NA19077.hp2 NA19084.hp2 NA19087.hp2 NA19088.hp2 NA19240.hp1 NA19240.hp2 NA20129.hp1 NA20129.hp2 NA20300.hp2 NA21309.hp1 NA21309.hp2	a0001 a0002 a0003 others(1): Show a0001 a0002 a0003 a0007	a0001c0001 a0001c0002 a0001c0004 others(6): Show a0001c0001 a0001c0002 a0001c0004 a0001c0006 a0001c0011 a0002c0003 a0003c0008 a0003c0009 a0007c0016	a0001c0001t0001 a0001c0001t0002 a0001c0001t0005 others(11): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0005 a0001c0001t0006 a0001c0002t0001 a0001c0004t0001 a0001c0004t0002 a0001c0006t0001 a0001c0006t0002 a0001c0011t0001 a0002c0003t0001 a0003c0008t0004 a0003c0009t0001 a0007c0016t0001	a0001c0001t0001g0004 a0001c0001t0001g0006 a0001c0001t0001g0007 others(78): Show a0001c0001t0001g0004 a0001c0001t0001g0006 a0001c0001t0001g0007 a0001c0001t0001g0011 a0001c0001t0001g0014 a0001c0001t0001g0030 a0001c0001t0001g0038 a0001c0001t0001g0044 a0001c0001t0001g0053 a0001c0001t0001g0056 a0001c0001t0001g0058 a0001c0001t0001g0059 a0001c0001t0001g0060 a0001c0001t0001g0072 a0001c0001t0001g0073 a0001c0001t0001g0074 a0001c0001t0001g0075 a0001c0001t0001g0076 a0001c0001t0001g0077 a0001c0001t0001g0078 a0001c0001t0001g0079 a0001c0001t0001g0083 a0001c0001t0001g0091 a0001c0001t0001g0092 a0001c0001t0001g0094 a0001c0001t0001g0095 a0001c0001t0001g0104 a0001c0001t0001g0106 a0001c0001t0001g0108 a0001c0001t0001g0169 a0001c0001t0001g0170 a0001c0001t0001g0172 a0001c0001t0001g0173 a0001c0001t0001g0174 a0001c0001t0001g0175 a0001c0001t0001g0179 a0001c0001t0001g0180 a0001c0001t0001g0192 a0001c0001t0001g0194 a0001c0001t0001g0195 a0001c0001t0001g0197 a0001c0001t0001g0198 a0001c0001t0001g0206 a0001c0001t0001g0218 a0001c0001t0002g0033 a0001c0001t0002g0085 a0001c0001t0002g0086 a0001c0001t0002g0101 a0001c0001t0005g0034 a0001c0001t0005g0093 a0001c0001t0005g0223 a0001c0001t0006g0196 a0001c0002t0001g0021 a0001c0002t0001g0109 a0001c0002t0001g0111 a0001c0002t0001g0116 a0001c0002t0001g0119 a0001c0002t0001g0120 a0001c0002t0001g0124 a0001c0004t0001g0015 a0001c0004t0001g0142 a0001c0004t0001g0143 a0001c0004t0001g0145 a0001c0004t0001g0149 a0001c0004t0001g0171 a0001c0004t0002g0035 a0001c0004t0002g0082 a0001c0006t0001g0040 a0001c0006t0001g0201 a0001c0006t0002g0164 a0001c0011t0001g0202 a0002c0003t0001g0003 a0002c0003t0001g0151 a0002c0003t0001g0203 a0002c0003t0001g0208 a0003c0008t0004g0087 a0003c0008t0004g0088 a0003c0008t0004g0089 a0003c0009t0001g0190 a0003c0009t0001g0191 a0007c0016t0001g0132	82	228	0.3597	6	c.475 others(23): Show c.475+2548_475+2549insCACCTC	CD99	ENSG00000002586.20	transcript	ENST00000381192.10	protein_coding	8/9		INFO_REALIGN_3_PRIME	chrX	TogoVar
CD99_chrX_2686295_2746309	2742640	C C	CTTTTTT CTTTTTT	downstream_gene_variant downstream_gene_variant	MODIFIER	HG02109.hp2 HG02109.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0217 a0001c0001t0001g0217	1	228	0.0044	6	c.18 others(17): Show c.1836_*1837insTTTTTT	CD99	ENSG00000002586.20	transcript	ENST00000381192.10	protein_coding		1332		chrX	TogoVar
CD9_chr12_6195400_6243266	6214344	C C	CTTTTTT CTTTTTT	intron_variant intron_variant	MODIFIER	HG00423.hp2 HG00438.hp2 HG00639.hp2 others(34): Show HG00423.hp2 HG00438.hp2 HG00639.hp2 HG01169.hp2 HG01258.hp2 HG01358.hp1 HG01433.hp1 HG02055.hp1 HG02148.hp1 HG02300.hp1 HG02572.hp2 HG02622.hp2 HG02647.hp1 HG03017.hp2 HG03139.hp1 HG03491.hp2 HG03492.hp2 HG04115.hp1 HG04115.hp2 NA18950.hp2 NA18952.hp1 NA18953.hp2 NA18957.hp1 NA18957.hp2 NA18973.hp1 NA18981.hp2 NA18983.hp2 NA18988.hp1 NA19005.hp2 NA19030.hp1 NA19043.hp1 NA19065.hp2 NA19067.hp2 NA19079.hp1 NA19090.hp1 NA19091.hp2 NA20752.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0016 a0001c0001t0001g0018 a0001c0001t0001g0019 others(31): Show a0001c0001t0001g0016 a0001c0001t0001g0018 a0001c0001t0001g0019 a0001c0001t0001g0041 a0001c0001t0001g0042 a0001c0001t0001g0043 a0001c0001t0001g0044 a0001c0001t0001g0059 a0001c0001t0001g0063 a0001c0001t0001g0065 a0001c0001t0001g0077 a0001c0001t0001g0078 a0001c0001t0001g0079 a0001c0001t0001g0080 a0001c0001t0001g0081 a0001c0001t0001g0082 a0001c0001t0001g0086 a0001c0001t0001g0087 a0001c0001t0001g0095 a0001c0001t0001g0097 a0001c0001t0001g0115 a0001c0001t0001g0116 a0001c0001t0001g0117 a0001c0001t0001g0118 a0001c0001t0001g0119 a0001c0001t0001g0120 a0001c0001t0001g0121 a0001c0001t0001g0130 a0001c0001t0001g0135 a0001c0001t0001g0178 a0001c0001t0001g0235 a0001c0001t0001g0243 a0001c0001t0001g0245 a0001c0001t0001g0253	37	378	0.0979	6	c.67- others(23): Show c.67-11063_67-11058dupTTTTTT	CD9	ENSG00000010278.15	transcript	ENST00000009180.10	protein_coding	1/7		INFO_REALIGN_3_PRIME	chr12	TogoVar
CDADC1_chr13_49242925_49298485	49280805	A A	AATTATT AATTATT	intron_variant intron_variant	MODIFIER	HG02451.hp2 HG02630.hp1 HG03130.hp2 others(17): Show HG02451.hp2 HG02630.hp1 HG03130.hp2 HG03139.hp2 HG03492.hp1 HG03834.hp2 HG04199.hp2 NA18942.hp2 NA18973.hp1 NA18983.hp1 NA18983.hp2 NA18987.hp1 NA18999.hp1 NA19004.hp2 NA19011.hp2 NA19043.hp1 NA19070.hp1 NA19091.hp2 NA21309.hp2 homoSapiens_chm13v2.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0003 a0001c0001t0004 a0001c0001t0001 a0001c0001t0003 a0001c0001t0004	a0001c0001t0001g0073 a0001c0001t0001g0074 a0001c0001t0001g0075 others(17): Show a0001c0001t0001g0073 a0001c0001t0001g0074 a0001c0001t0001g0075 a0001c0001t0001g0094 a0001c0001t0001g0101 a0001c0001t0001g0135 a0001c0001t0001g0141 a0001c0001t0001g0153 a0001c0001t0001g0166 a0001c0001t0001g0171 a0001c0001t0001g0172 a0001c0001t0001g0175 a0001c0001t0003g0021 a0001c0001t0003g0026 a0001c0001t0003g0028 a0001c0001t0003g0031 a0001c0001t0003g0032 a0001c0001t0003g0033 a0001c0001t0003g0034 a0001c0001t0004g0037	20	368	0.0544	6	c.141 others(23): Show c.1410+132_1410+137dupATTATT	CDADC1	ENSG00000102543.14	transcript	ENST00000251108.10	protein_coding	8/9		INFO_REALIGN_3_PRIME	chr13	TogoVar
CDADC1_chr13_49242925_49298485	49293525	G G	GGTGTGT GGTGTGT	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00738.hp1 HG01168.hp2 HG01928.hp1 HG00738.hp1 HG01168.hp2 HG01928.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0254 a0001c0001t0002g0255 a0001c0001t0002g0309 a0001c0001t0002g0254 a0001c0001t0002g0255 a0001c0001t0002g0309	3	368	0.0082	6	c.17 others(17): Show c.1768_*1769insGTGTGT	CDADC1	ENSG00000102543.14	transcript	ENST00000251108.10	protein_coding		41		chr13	TogoVar
CDA_chr1_20584097_20623903	20586212	C C	CTTTCTT CTTTCTT	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00280.hp1 HG00408.hp2 HG00558.hp1 others(92): Show HG00280.hp1 HG00408.hp2 HG00558.hp1 HG00558.hp2 HG00597.hp1 HG00621.hp1 HG00621.hp2 HG00642.hp1 HG00673.hp2 HG00733.hp1 HG00733.hp2 HG00735.hp2 HG00738.hp1 HG01070.hp1 HG01081.hp1 HG01099.hp1 HG01123.hp1 HG01123.hp2 HG01167.hp2 HG01243.hp1 HG01256.hp1 HG01256.hp2 HG01258.hp1 HG01258.hp2 HG01496.hp1 HG01943.hp1 HG01952.hp1 HG01952.hp2 HG01975.hp2 HG01978.hp1 HG01978.hp2 HG01993.hp2 HG02027.hp1 HG02027.hp2 HG02056.hp2 HG02071.hp2 HG02074.hp2 HG02080.hp1 HG02083.hp1 HG02083.hp2 HG02132.hp1 HG02257.hp1 HG02273.hp2 HG02523.hp2 HG02602.hp2 HG02630.hp2 HG02976.hp1 HG03017.hp2 HG03491.hp1 HG03492.hp2 HG03654.hp2 HG03688.hp1 HG03704.hp1 HG03704.hp2 HG03942.hp2 HG04199.hp2 HG04228.hp1 HG06807.hp2 NA18747.hp1 NA18747.hp2 NA18941.hp2 NA18942.hp2 NA18943.hp1 NA18949.hp2 NA18950.hp1 NA18952.hp1 NA18955.hp2 NA18962.hp1 NA18965.hp1 NA18967.hp1 NA18968.hp1 NA18968.hp2 NA18977.hp2 NA18978.hp1 NA18978.hp2 NA18980.hp2 NA18983.hp2 NA18987.hp1 NA18990.hp1 NA18990.hp2 NA18998.hp1 NA19002.hp1 NA19007.hp1 NA19011.hp2 NA19056.hp2 NA19060.hp1 NA19062.hp2 NA19068.hp1 NA19076.hp1 NA19077.hp1 NA19077.hp2 NA19082.hp1 NA19083.hp1 NA20752.hp1 NA20905.hp2	a0001 a0002 a0003 a0001 a0002 a0003	a0001c0001 a0001c0002 a0002c0003 others(2): Show a0001c0001 a0001c0002 a0002c0003 a0002c0004 a0003c0005	a0001c0001t0001 a0001c0001t0003 a0001c0002t0002 others(4): Show a0001c0001t0001 a0001c0001t0003 a0001c0002t0002 a0001c0002t0004 a0002c0003t0002 a0002c0004t0003 a0003c0005t0001	a0001c0001t0001g0002 a0001c0001t0001g0003 a0001c0001t0001g0009 others(76): Show a0001c0001t0001g0002 a0001c0001t0001g0003 a0001c0001t0001g0009 a0001c0001t0001g0017 a0001c0001t0001g0018 a0001c0001t0001g0019 a0001c0001t0001g0020 a0001c0001t0001g0021 a0001c0001t0001g0022 a0001c0001t0001g0023 a0001c0001t0001g0033 a0001c0001t0001g0034 a0001c0001t0001g0035 a0001c0001t0001g0036 a0001c0001t0001g0037 a0001c0001t0001g0038 a0001c0001t0001g0124 a0001c0001t0001g0130 a0001c0001t0001g0133 a0001c0001t0001g0134 a0001c0001t0001g0135 a0001c0001t0001g0140 a0001c0001t0001g0141 a0001c0001t0001g0142 a0001c0001t0001g0143 a0001c0001t0001g0145 a0001c0001t0001g0146 a0001c0001t0001g0149 a0001c0001t0001g0150 a0001c0001t0001g0152 a0001c0001t0001g0159 a0001c0001t0001g0170 a0001c0001t0001g0175 a0001c0001t0001g0180 a0001c0001t0001g0193 a0001c0001t0001g0205 a0001c0001t0001g0206 a0001c0001t0001g0207 a0001c0001t0001g0208 a0001c0001t0001g0209 a0001c0001t0001g0210 a0001c0001t0001g0211 a0001c0001t0001g0216 a0001c0001t0001g0217 a0001c0001t0001g0218 a0001c0001t0001g0219 a0001c0001t0001g0220 a0001c0001t0001g0221 a0001c0001t0001g0223 a0001c0001t0001g0226 a0001c0001t0001g0227 a0001c0001t0001g0228 a0001c0001t0001g0232 a0001c0001t0001g0234 a0001c0001t0001g0241 a0001c0001t0001g0242 a0001c0001t0001g0244 a0001c0001t0001g0245 a0001c0001t0001g0246 a0001c0001t0001g0247 a0001c0001t0001g0248 a0001c0001t0001g0249 a0001c0001t0001g0256 a0001c0001t0001g0353 a0001c0001t0003g0005 a0001c0001t0003g0049 a0001c0001t0003g0354 a0001c0002t0002g0051 a0001c0002t0002g0263 a0001c0002t0004g0160 a0001c0002t0004g0161 a0001c0002t0004g0163 a0001c0002t0004g0229 a0001c0002t0004g0243 a0002c0003t0002g0305 a0002c0003t0002g0315 a0002c0004t0003g0190 a0003c0005t0001g0010 a0003c0005t0001g0231	95	418	0.2273	6	c.-29 others(17): Show c.-2918_-2917insTTTCTT	CDA	ENSG00000158825.6	transcript	ENST00000375071.4	protein_coding		2884		chr1	TogoVar
CDA_chr1_20584097_20623903	20615470	C C	CAAAAAA CAAAAAA	intron_variant intron_variant	MODIFIER	HG00408.hp1 HG00544.hp1 HG00597.hp2 others(8): Show HG00408.hp1 HG00544.hp1 HG00597.hp2 HG00621.hp2 HG03225.hp2 NA18947.hp1 NA18991.hp2 NA19085.hp2 NA19089.hp1 NA19091.hp1 NA19240.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0003 a0001c0001t0001 a0001c0001t0003	a0001c0001t0001g0015 a0001c0001t0001g0121 a0001c0001t0001g0122 others(7): Show a0001c0001t0001g0015 a0001c0001t0001g0121 a0001c0001t0001g0122 a0001c0001t0001g0124 a0001c0001t0001g0125 a0001c0001t0001g0126 a0001c0001t0001g0127 a0001c0001t0001g0129 a0001c0001t0003g0075 a0001c0001t0003g0262	11	418	0.0263	6	c.324 others(23): Show c.324+1581_324+1586dupAAAAAA	CDA	ENSG00000158825.6	transcript	ENST00000375071.4	protein_coding	3/3		INFO_REALIGN_3_PRIME	chr1	TogoVar

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