Joint Open Genome and Omics Platform (JoGo)

Search by Variant

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Chr

Chromosome name (e.g., chr11).

Snpeff genename

Exact SnpEff gene name.

Sampleids

Target sampleid (e.g. HG02615).

Snpeff haplotype class

Haplotype-annotation class (e.g., ahapid, ahapid+chapid).

Snpeff annotation impact

Exact impact level (e.g., HIGH, MODERATE, LOW).

Snpeff annotation impact detail

Keyword match in SnpEff annotation.

Hapid

One or more haplotype IDs (comma-separated; e.g., a0001, a01, a0001c0001, a01c02, a1c2, a0001c0001t0005, a0001c0001t0005g0018).

Samplehapid

Sample haplotype IDs to include (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

No_hapid

Haplotype IDs to exclude (comma-separated; e.g., a0001, a0002, a0001c0001, a0001c0001t0005, a1, a01).

No_samplehapid

Sample haplotype IDs to exclude (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

Start

Start position (GRCh38).

End

End position (GRCh38).

Minac

Minimum alternate allele count (≥).

Maxac

Maximum alternate allele count (≤).

Minlen

Minimum variant length (≥).

Maxlen

Maximum variant length (≤).

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⚠️ Results limited to 10,000 hits. Refine your search for more specific results.

regionname	pos	ref	alt	annotation	impact	samples	ahapids	achapids	acthapids	actghapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	external
AFM_chr4_73476745_73509001	73485590	A A	AGACGAG AGACGAG	intron_variant intron_variant	MODIFIER	NA18964.hp2 NA18971.hp1 NA18992.hp2 others(4): Show NA18964.hp2 NA18971.hp1 NA18992.hp2 NA18998.hp1 NA19002.hp1 NA19007.hp1 NA19011.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0030 a0001c0001t0001g0035 a0001c0001t0001g0121 others(2): Show a0001c0001t0001g0030 a0001c0001t0001g0035 a0001c0001t0001g0121 a0001c0001t0001g0122 a0001c0001t0001g0124	7	368	0.0190	6	c.271 others(21): Show c.271-270_271-269insCGAGGA	AFM	ENSG00000079557.5	transcript	ENST00000226355.5	protein_coding	3/14		INFO_REALIGN_3_PRIME	chr4	TogoVar
AFP_chr4_73431221_73461174	73434134	T T	TATCTAC TATCTAC	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00140.hp1 HG00609.hp1 HG00639.hp2 others(89): Show HG00140.hp1 HG00609.hp1 HG00639.hp2 HG00738.hp1 HG01099.hp2 HG01109.hp1 HG01109.hp2 HG01123.hp1 HG01243.hp2 HG01433.hp1 HG01496.hp1 HG01496.hp2 HG01515.hp1 HG01516.hp2 HG01517.hp1 HG01884.hp2 HG01891.hp1 HG01891.hp2 HG01928.hp2 HG01934.hp2 HG01975.hp1 HG01993.hp1 HG02040.hp2 HG02055.hp2 HG02071.hp1 HG02083.hp2 HG02135.hp1 HG02145.hp2 HG02155.hp2 HG02165.hp2 HG02273.hp2 HG02280.hp1 HG02293.hp1 HG02451.hp1 HG02723.hp2 HG02886.hp1 HG02896.hp2 HG02897.hp2 HG02922.hp2 HG02970.hp2 HG02976.hp1 HG03017.hp2 HG03130.hp2 HG03195.hp2 HG03453.hp1 HG03486.hp1 HG03516.hp2 HG03540.hp1 HG03654.hp1 HG03654.hp2 HG03834.hp1 HG03927.hp1 HG03942.hp1 HG04115.hp2 HG04184.hp1 HG04199.hp1 HG04204.hp1 HG04228.hp1 HG06807.hp1 NA18612.hp2 NA18943.hp2 NA18948.hp1 NA18950.hp2 NA18953.hp2 NA18955.hp1 NA18956.hp1 NA18959.hp2 NA18960.hp1 NA18962.hp2 NA18963.hp1 NA18977.hp1 NA18979.hp1 NA18985.hp1 NA18986.hp2 NA18992.hp1 NA18999.hp2 NA19002.hp1 NA19004.hp1 NA19004.hp2 NA19007.hp2 NA19030.hp1 NA19056.hp1 NA19063.hp1 NA19072.hp2 NA19077.hp1 NA19082.hp2 NA19084.hp1 NA19084.hp2 NA19087.hp1 NA19240.hp1 NA20129.hp2 NA20805.hp1	a0001 a0002 a0006 others(2): Show a0001 a0002 a0006 a0007 a0008	a0001c0001 a0001c0003 a0002c0002 others(3): Show a0001c0001 a0001c0003 a0002c0002 a0006c0009 a0007c0012 a0008c0015	a0001c0001t0001 a0001c0001t0002 a0001c0001t0005 others(6): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0005 a0001c0001t0006 a0001c0003t0001 a0002c0002t0002 a0006c0009t0002 a0007c0012t0002 a0008c0015t0002	a0001c0001t0001g0003 a0001c0001t0001g0105 a0001c0001t0001g0106 others(34): Show a0001c0001t0001g0003 a0001c0001t0001g0105 a0001c0001t0001g0106 a0001c0001t0001g0109 a0001c0001t0002g0002 a0001c0001t0002g0006 a0001c0001t0002g0008 a0001c0001t0002g0011 a0001c0001t0002g0018 a0001c0001t0002g0020 a0001c0001t0002g0022 a0001c0001t0002g0024 a0001c0001t0002g0032 a0001c0001t0002g0033 a0001c0001t0002g0080 a0001c0001t0002g0090 a0001c0001t0002g0093 a0001c0001t0002g0096 a0001c0001t0002g0098 a0001c0001t0002g0100 a0001c0001t0002g0112 a0001c0001t0002g0116 a0001c0001t0002g0117 a0001c0001t0002g0118 a0001c0001t0005g0009 a0001c0001t0006g0094 a0001c0003t0001g0023 a0001c0003t0001g0034 a0002c0002t0002g0002 a0002c0002t0002g0019 a0002c0002t0002g0036 a0002c0002t0002g0087 a0002c0002t0002g0088 a0002c0002t0002g0099 a0006c0009t0002g0008 a0007c0012t0002g0113 a0008c0015t0002g0081	92	390	0.2359	6	c.-21 others(17): Show c.-2129_-2128insATCTAC	AFP	ENSG00000081051.8	transcript	ENST00000395792.7	protein_coding		2086		chr4	TogoVar
AFP_chr4_73431221_73461174	73434146	C C	CATCTAT CATCTAT	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00099.hp1 HG00280.hp2 HG00323.hp2 others(142): Show HG00099.hp1 HG00280.hp2 HG00323.hp2 HG00408.hp2 HG00438.hp1 HG00438.hp2 HG00558.hp2 HG00609.hp2 HG00621.hp1 HG00621.hp2 HG00642.hp2 HG00733.hp1 HG00738.hp2 HG00741.hp1 HG01069.hp2 HG01071.hp1 HG01106.hp1 HG01175.hp1 HG01175.hp2 HG01192.hp1 HG01255.hp1 HG01256.hp2 HG01257.hp2 HG01258.hp1 HG01361.hp1 HG01361.hp2 HG01515.hp2 HG01516.hp1 HG01517.hp2 HG01884.hp1 HG01943.hp2 HG01952.hp2 HG02015.hp1 HG02015.hp2 HG02027.hp1 HG02040.hp1 HG02056.hp1 HG02074.hp1 HG02074.hp2 HG02080.hp1 HG02083.hp1 HG02109.hp1 HG02109.hp2 HG02129.hp1 HG02129.hp2 HG02135.hp2 HG02145.hp1 HG02148.hp1 HG02155.hp1 HG02165.hp1 HG02257.hp1 HG02280.hp2 HG02300.hp1 HG02300.hp2 HG02486.hp2 HG02523.hp1 HG02559.hp1 HG02602.hp1 HG02602.hp2 HG02615.hp1 HG02615.hp2 HG02630.hp2 HG02647.hp2 HG02735.hp2 HG02738.hp1 HG02818.hp2 HG02895.hp1 HG02896.hp1 HG02922.hp1 HG02965.hp1 HG02965.hp2 HG02970.hp1 HG02976.hp2 HG03017.hp1 HG03041.hp1 HG03041.hp2 HG03139.hp2 HG03239.hp2 HG03486.hp2 HG03490.hp2 HG03491.hp1 HG03492.hp1 HG03516.hp1 HG03579.hp1 HG03688.hp2 HG03710.hp1 HG03710.hp2 HG03831.hp1 HG03834.hp2 HG03942.hp2 HG04115.hp1 NA18522.hp1 NA18612.hp1 NA18747.hp1 NA18747.hp2 NA18945.hp1 NA18947.hp1 NA18953.hp1 NA18954.hp1 NA18957.hp2 NA18959.hp1 NA18960.hp2 NA18963.hp2 NA18964.hp1 NA18965.hp2 NA18970.hp1 NA18971.hp1 NA18971.hp2 NA18972.hp1 NA18972.hp2 NA18974.hp2 NA18978.hp2 NA18979.hp2 NA18981.hp2 NA18983.hp1 NA18984.hp2 NA18985.hp2 NA18986.hp1 NA18992.hp2 NA18995.hp2 NA18998.hp2 NA18999.hp1 NA19002.hp2 NA19003.hp1 NA19003.hp2 NA19007.hp1 NA19010.hp1 NA19011.hp1 NA19012.hp2 NA19030.hp2 NA19043.hp1 NA19043.hp2 NA19057.hp2 NA19062.hp1 NA19064.hp2 NA19072.hp1 NA19075.hp1 NA19076.hp1 NA19076.hp2 NA19086.hp2 NA19089.hp2 NA20129.hp1 NA20752.hp1 NA20752.hp2 NA20805.hp2	a0001 a0002 a0009 others(1): Show a0001 a0002 a0009 a0011	a0001c0001 a0001c0003 a0001c0013 others(5): Show a0001c0001 a0001c0003 a0001c0013 a0001c0014 a0001c0016 a0002c0002 a0009c0017 a0011c0010	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(8): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 a0001c0003t0001 a0001c0013t0001 a0001c0014t0001 a0001c0016t0001 a0002c0002t0002 a0009c0017t0001 a0011c0010t0001	a0001c0001t0001g0001 a0001c0001t0001g0004 a0001c0001t0001g0007 others(42): Show a0001c0001t0001g0001 a0001c0001t0001g0004 a0001c0001t0001g0007 a0001c0001t0001g0010 a0001c0001t0001g0013 a0001c0001t0001g0015 a0001c0001t0001g0016 a0001c0001t0001g0017 a0001c0001t0001g0027 a0001c0001t0001g0028 a0001c0001t0001g0029 a0001c0001t0001g0030 a0001c0001t0001g0042 a0001c0001t0001g0043 a0001c0001t0001g0044 a0001c0001t0001g0047 a0001c0001t0001g0048 a0001c0001t0001g0049 a0001c0001t0001g0051 a0001c0001t0001g0053 a0001c0001t0001g0054 a0001c0001t0001g0055 a0001c0001t0001g0057 a0001c0001t0001g0058 a0001c0001t0001g0059 a0001c0001t0001g0060 a0001c0001t0001g0062 a0001c0001t0001g0063 a0001c0001t0001g0071 a0001c0001t0002g0014 a0001c0001t0002g0052 a0001c0001t0002g0074 a0001c0001t0003g0001 a0001c0001t0003g0061 a0001c0001t0004g0064 a0001c0003t0001g0001 a0001c0003t0001g0010 a0001c0003t0001g0070 a0001c0013t0001g0016 a0001c0014t0001g0001 a0001c0016t0001g0016 a0002c0002t0002g0026 a0002c0002t0002g0066 a0009c0017t0001g0007 a0011c0010t0001g0065	145	390	0.3718	6	c.-21 others(17): Show c.-2117_-2116insATCTAT	AFP	ENSG00000081051.8	transcript	ENST00000395792.7	protein_coding		2074		chr4	TogoVar
AFTPH_chr2_64519328_64598005	64550677	G G	GCACACA GCACACA	intron_variant intron_variant	MODIFIER	HG00140.hp1 HG00438.hp2 HG00621.hp2 others(22): Show HG00140.hp1 HG00438.hp2 HG00621.hp2 HG00741.hp2 HG01071.hp2 HG01261.hp2 HG01496.hp2 HG01515.hp1 HG01928.hp1 HG01934.hp2 HG02132.hp2 HG03017.hp1 HG03195.hp1 NA18942.hp2 NA18948.hp1 NA18950.hp2 NA18955.hp1 NA18978.hp2 NA19002.hp2 NA19012.hp1 NA19012.hp2 NA19043.hp1 NA19077.hp1 NA19079.hp1 NA20752.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0001c0016 a0002c0002 a0001c0001 a0001c0016 a0002c0002	a0001c0001t0001 a0001c0001t0004 a0001c0001t0006 others(3): Show a0001c0001t0001 a0001c0001t0004 a0001c0001t0006 a0001c0001t0007 a0001c0016t0001 a0002c0002t0003	a0001c0001t0001g0114 a0001c0001t0001g0123 a0001c0001t0001g0135 others(22): Show a0001c0001t0001g0114 a0001c0001t0001g0123 a0001c0001t0001g0135 a0001c0001t0001g0142 a0001c0001t0001g0147 a0001c0001t0001g0152 a0001c0001t0001g0155 a0001c0001t0001g0162 a0001c0001t0001g0170 a0001c0001t0001g0171 a0001c0001t0001g0172 a0001c0001t0001g0173 a0001c0001t0001g0193 a0001c0001t0001g0195 a0001c0001t0001g0219 a0001c0001t0001g0229 a0001c0001t0001g0242 a0001c0001t0001g0254 a0001c0001t0001g0261 a0001c0001t0001g0332 a0001c0001t0004g0364 a0001c0001t0006g0198 a0001c0001t0007g0116 a0001c0016t0001g0161 a0002c0002t0003g0299	25	372	0.0672	6	c.-32 others(21): Show c.-32-717_-32-712dupCACACA	AFTPH	ENSG00000119844.17	transcript	ENST00000409933.6	protein_coding	1/9		INFO_REALIGN_3_PRIME	chr2	TogoVar
AFTPH_chr2_64519328_64598005	64555555	T T	TCACACA TCACACA	intron_variant intron_variant	MODIFIER	HG01993.hp2 HG02109.hp2 HG02145.hp2 others(4): Show HG01993.hp2 HG02109.hp2 HG02145.hp2 HG02895.hp2 HG03098.hp2 HG03471.hp2 NA18949.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0002c0002 a0001c0001 a0002c0002	a0001c0001t0001 a0001c0001t0004 a0002c0002t0002 others(1): Show a0001c0001t0001 a0001c0001t0004 a0002c0002t0002 a0002c0002t0010	a0001c0001t0001g0124 a0001c0001t0001g0160 a0001c0001t0001g0258 others(4): Show a0001c0001t0001g0124 a0001c0001t0001g0160 a0001c0001t0001g0258 a0001c0001t0004g0061 a0002c0002t0002g0283 a0002c0002t0002g0284 a0002c0002t0010g0323	7	372	0.0188	6	c.193 others(25): Show c.1935+2185_1935+2190dupCACACA	AFTPH	ENSG00000119844.17	transcript	ENST00000409933.6	protein_coding	2/9		INFO_REALIGN_3_PRIME	chr2	TogoVar
AFTPH_chr2_64519328_64598005	64576118	C C	CACACGT CACACGT	intron_variant intron_variant	MODIFIER	HG01074.hp2 HG01243.hp2 HG03225.hp1 others(2): Show HG01074.hp2 HG01243.hp2 HG03225.hp1 NA18522.hp1 NA18906.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0004 a0001c0001t0005 a0001c0001t0001 a0001c0001t0004 a0001c0001t0005	a0001c0001t0001g0042 a0001c0001t0004g0001 a0001c0001t0004g0094 others(1): Show a0001c0001t0001g0042 a0001c0001t0004g0001 a0001c0001t0004g0094 a0001c0001t0005g0102	5	372	0.0134	6	c.239 others(25): Show c.2394+3050_2394+3051insACACGT	AFTPH	ENSG00000119844.17	transcript	ENST00000409933.6	protein_coding	6/9			chr2	TogoVar
AFTPH_chr2_64519328_64598005	64596329	T T	TACACAC TACACAC	downstream_gene_variant downstream_gene_variant	MODIFIER	HG01496.hp2 HG01515.hp1 HG01928.hp2 others(15): Show HG01496.hp2 HG01515.hp1 HG01928.hp2 HG01975.hp2 HG02273.hp1 HG02280.hp1 HG02572.hp1 HG02630.hp1 HG02922.hp1 HG03098.hp1 HG03195.hp1 HG03471.hp1 HG03540.hp2 HG04184.hp1 HG04228.hp2 NA19082.hp2 NA19083.hp2 NA19086.hp2	a0001 a0002 a0004 a0001 a0002 a0004	a0001c0001 a0002c0002 a0004c0004 a0001c0001 a0002c0002 a0004c0004	a0001c0001t0001 a0001c0001t0003 a0001c0001t0006 others(4): Show a0001c0001t0001 a0001c0001t0003 a0001c0001t0006 a0001c0001t0014 a0001c0001t0015 a0002c0002t0002 a0004c0004t0001	a0001c0001t0001g0130 a0001c0001t0001g0135 a0001c0001t0001g0166 others(15): Show a0001c0001t0001g0130 a0001c0001t0001g0135 a0001c0001t0001g0166 a0001c0001t0001g0169 a0001c0001t0001g0173 a0001c0001t0001g0181 a0001c0001t0001g0199 a0001c0001t0001g0201 a0001c0001t0001g0216 a0001c0001t0001g0217 a0001c0001t0001g0254 a0001c0001t0003g0013 a0001c0001t0003g0014 a0001c0001t0006g0213 a0001c0001t0014g0006 a0001c0001t0015g0218 a0002c0002t0002g0310 a0004c0004t0001g0223	18	372	0.0484	6	c.42 others(17): Show c.4294_*4295insACACAC	AFTPH	ENSG00000119844.17	transcript	ENST00000409933.6	protein_coding		3325		chr2	TogoVar
AGAP1_chr2_235489043_236136793	235494004	C C	CGGGCGA CGGGCGA	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00642.hp1 HG00642.hp2 HG01168.hp2 others(14): Show HG00642.hp1 HG00642.hp2 HG01168.hp2 HG01192.hp1 HG01358.hp1 HG01928.hp1 HG02080.hp1 HG02080.hp2 HG02083.hp1 HG02083.hp2 HG02135.hp1 HG03540.hp2 HG03831.hp1 NA18906.hp1 NA19011.hp1 NA19011.hp2 NA20300.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0001c0002 a0001c0003 others(4): Show a0001c0001 a0001c0002 a0001c0003 a0001c0006 a0002c0004 a0002c0007 a0002c0020	a0001c0001t0005 a0001c0001t0010 a0001c0002t0001 others(10): Show a0001c0001t0005 a0001c0001t0010 a0001c0002t0001 a0001c0003t0025 a0001c0006t0001 a0001c0006t0006 a0001c0006t0037 a0002c0004t0001 a0002c0004t0006 a0002c0007t0005 a0002c0007t0008 a0002c0007t0018 a0002c0020t0001	a0001c0001t0005g0012 a0001c0001t0010g0014 a0001c0002t0001g0010 others(14): Show a0001c0001t0005g0012 a0001c0001t0010g0014 a0001c0002t0001g0010 a0001c0002t0001g0018 a0001c0002t0001g0027 a0001c0002t0001g0030 a0001c0003t0025g0015 a0001c0006t0001g0016 a0001c0006t0006g0019 a0001c0006t0037g0021 a0002c0004t0001g0017 a0002c0004t0001g0025 a0002c0004t0006g0024 a0002c0007t0005g0026 a0002c0007t0008g0011 a0002c0007t0018g0028 a0002c0020t0001g0022	17	98	0.1735	6	c.-68 others(15): Show c.-683_-682insGGGCGA	AGAP1	ENSG00000157985.20	transcript	ENST00000304032.13	protein_coding		38		chr2	TogoVar
AGAP1_chr2_235489043_236136793	235514162	G G	GCGCACA GCGCACA	intron_variant intron_variant	MODIFIER	HG01358.hp2 HG02109.hp2 HG02280.hp2 others(8): Show HG01358.hp2 HG02109.hp2 HG02280.hp2 HG02630.hp1 HG02723.hp2 HG02809.hp1 HG02809.hp2 HG02976.hp2 HG03139.hp1 HG03195.hp1 NA20300.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0003 others(2): Show a0001c0001 a0001c0002 a0001c0003 a0001c0005 a0001c0010	a0001c0001t0002 a0001c0001t0003 a0001c0001t0011 others(7): Show a0001c0001t0002 a0001c0001t0003 a0001c0001t0011 a0001c0002t0013 a0001c0002t0032 a0001c0003t0002 a0001c0003t0003 a0001c0003t0021 a0001c0005t0031 a0001c0010t0001	a0001c0001t0002g0002 a0001c0001t0003g0034 a0001c0001t0003g0063 others(8): Show a0001c0001t0002g0002 a0001c0001t0003g0034 a0001c0001t0003g0063 a0001c0001t0011g0020 a0001c0002t0013g0035 a0001c0002t0032g0051 a0001c0003t0002g0005 a0001c0003t0003g0001 a0001c0003t0021g0023 a0001c0005t0031g0031 a0001c0010t0001g0032	11	98	0.1122	6	c.163 others(25): Show c.163+19314_163+19315insGCACAC	AGAP1	ENSG00000157985.20	transcript	ENST00000304032.13	protein_coding	1/17		INFO_REALIGN_3_PRIME	chr2	TogoVar
AGAP1_chr2_235489043_236136793	235516055	T T	TCTGCTG TCTGCTG	intron_variant intron_variant	MODIFIER	HG00642.hp1 HG00642.hp2 HG01123.hp2 others(24): Show HG00642.hp1 HG00642.hp2 HG01123.hp2 HG01168.hp2 HG01192.hp2 HG01358.hp2 HG01496.hp2 HG01928.hp1 HG02080.hp1 HG02083.hp2 HG02109.hp2 HG02135.hp1 HG02280.hp2 HG02630.hp1 HG02723.hp2 HG02809.hp1 HG02809.hp2 HG02896.hp2 HG02976.hp2 HG03139.hp1 HG03195.hp1 HG03831.hp1 NA18906.hp2 NA19011.hp1 NA19030.hp1 NA20300.hp1 NA20300.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0001c0002 a0001c0003 others(6): Show a0001c0001 a0001c0002 a0001c0003 a0001c0005 a0001c0006 a0001c0010 a0002c0004 a0002c0007 a0002c0020	a0001c0001t0002 a0001c0001t0003 a0001c0001t0011 others(17): Show a0001c0001t0002 a0001c0001t0003 a0001c0001t0011 a0001c0002t0001 a0001c0002t0013 a0001c0002t0032 a0001c0002t0039 a0001c0003t0002 a0001c0003t0003 a0001c0003t0021 a0001c0005t0013 a0001c0005t0031 a0001c0006t0006 a0001c0006t0033 a0001c0010t0001 a0002c0004t0001 a0002c0004t0006 a0002c0007t0005 a0002c0007t0018 a0002c0020t0001	a0001c0001t0002g0002 a0001c0001t0003g0034 a0001c0001t0003g0036 others(24): Show a0001c0001t0002g0002 a0001c0001t0003g0034 a0001c0001t0003g0036 a0001c0001t0003g0063 a0001c0001t0011g0020 a0001c0002t0001g0004 a0001c0002t0001g0010 a0001c0002t0001g0018 a0001c0002t0001g0027 a0001c0002t0013g0035 a0001c0002t0032g0051 a0001c0002t0039g0059 a0001c0003t0002g0005 a0001c0003t0003g0001 a0001c0003t0021g0023 a0001c0005t0013g0050 a0001c0005t0031g0031 a0001c0006t0006g0019 a0001c0006t0033g0087 a0001c0010t0001g0032 a0002c0004t0001g0017 a0002c0004t0001g0025 a0002c0004t0006g0024 a0002c0004t0006g0042 a0002c0007t0005g0026 a0002c0007t0018g0028 a0002c0020t0001g0022	27	98	0.2755	6	c.163 others(25): Show c.163+21240_163+21245dupCTGCTG	AGAP1	ENSG00000157985.20	transcript	ENST00000304032.13	protein_coding	1/17		INFO_REALIGN_3_PRIME	chr2	TogoVar
AGAP1_chr2_235489043_236136793	235521734	T T	TTTTATG TTTTATG	intron_variant intron_variant	MODIFIER	HG02083.hp1 HG02083.hp2 HG02615.hp1 others(2): Show HG02083.hp1 HG02083.hp2 HG02615.hp1 HG04199.hp2 NA21309.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0001c0002 a0001c0017 others(1): Show a0001c0001 a0001c0002 a0001c0017 a0002c0007	a0001c0001t0044 a0001c0002t0001 a0001c0002t0014 others(2): Show a0001c0001t0044 a0001c0002t0001 a0001c0002t0014 a0001c0017t0008 a0002c0007t0008	a0001c0001t0044g0041 a0001c0002t0001g0027 a0001c0002t0014g0076 others(2): Show a0001c0001t0044g0041 a0001c0002t0001g0027 a0001c0002t0014g0076 a0001c0017t0008g0092 a0002c0007t0008g0011	5	98	0.0510	6	c.163 others(25): Show c.163+26886_163+26887insTTATGT	AGAP1	ENSG00000157985.20	transcript	ENST00000304032.13	protein_coding	1/17		INFO_REALIGN_3_PRIME	chr2	TogoVar
AGAP1_chr2_235489043_236136793	235536352	T T	TACACAC TACACAC	intron_variant intron_variant	MODIFIER	HG00642.hp1 HG01123.hp2 HG01168.hp2 others(9): Show HG00642.hp1 HG01123.hp2 HG01168.hp2 HG02135.hp1 HG03471.hp1 HG03516.hp2 HG03831.hp1 HG03831.hp2 NA18522.hp2 NA19011.hp1 NA20129.hp2 NA20300.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0001c0002 a0001c0006 others(4): Show a0001c0001 a0001c0002 a0001c0006 a0001c0019 a0002c0004 a0002c0007 a0002c0020	a0001c0001t0048 a0001c0002t0001 a0001c0002t0004 others(7): Show a0001c0001t0048 a0001c0002t0001 a0001c0002t0004 a0001c0006t0006 a0001c0006t0033 a0001c0019t0007 a0002c0004t0001 a0002c0007t0005 a0002c0007t0018 a0002c0020t0001	a0001c0001t0048g0054 a0001c0002t0001g0013 a0001c0002t0001g0018 others(9): Show a0001c0001t0048g0054 a0001c0002t0001g0013 a0001c0002t0001g0018 a0001c0002t0004g0072 a0001c0006t0006g0019 a0001c0006t0033g0087 a0001c0019t0007g0056 a0002c0004t0001g0025 a0002c0007t0005g0026 a0002c0007t0005g0094 a0002c0007t0018g0028 a0002c0020t0001g0022	12	98	0.1225	6	c.163 others(25): Show c.163+41521_163+41526dupCACACA	AGAP1	ENSG00000157985.20	transcript	ENST00000304032.13	protein_coding	1/17		INFO_REALIGN_3_PRIME	chr2	TogoVar
AGAP1_chr2_235489043_236136793	235536406	T T	TACACAC TACACAC	intron_variant intron_variant	MODIFIER	HG00438.hp1 HG00438.hp2 HG00642.hp1 others(34): Show HG00438.hp1 HG00438.hp2 HG00642.hp1 HG01192.hp1 HG01884.hp2 HG01928.hp1 HG01928.hp2 HG02080.hp2 HG02083.hp1 HG02083.hp2 HG02135.hp2 HG02280.hp1 HG02572.hp2 HG02622.hp1 HG02717.hp2 HG02818.hp1 HG02818.hp2 HG02896.hp1 HG02896.hp2 HG02976.hp1 HG03041.hp1 HG03041.hp2 HG03098.hp2 HG03139.hp2 HG03471.hp2 HG03486.hp1 HG03516.hp1 HG03540.hp1 HG03540.hp2 HG04199.hp1 HG04199.hp2 NA18522.hp1 NA18522.hp2 NA18906.hp1 NA19011.hp2 NA20300.hp2 NA21309.hp1	a0001 a0002 a0003 a0001 a0002 a0003	a0001c0001 a0001c0002 a0001c0003 others(11): Show a0001c0001 a0001c0002 a0001c0003 a0001c0006 a0001c0009 a0001c0012 a0001c0016 a0001c0017 a0001c0018 a0002c0004 a0002c0007 a0002c0013 a0002c0020 a0003c0015	a0001c0001t0002 a0001c0001t0003 a0001c0001t0005 others(27): Show a0001c0001t0002 a0001c0001t0003 a0001c0001t0005 a0001c0001t0008 a0001c0001t0009 a0001c0001t0010 a0001c0001t0011 a0001c0001t0019 a0001c0001t0024 a0001c0002t0001 a0001c0002t0004 a0001c0002t0006 a0001c0002t0034 a0001c0002t0039 a0001c0003t0025 a0001c0006t0001 a0001c0006t0037 a0001c0009t0015 a0001c0009t0017 a0001c0012t0009 a0001c0016t0007 a0001c0017t0008 a0001c0018t0049 a0002c0004t0006 a0002c0007t0008 a0002c0007t0018 a0002c0007t0023 a0002c0013t0041 a0002c0020t0001 a0003c0015t0002	a0001c0001t0002g0046 a0001c0001t0002g0047 a0001c0001t0002g0049 others(34): Show a0001c0001t0002g0046 a0001c0001t0002g0047 a0001c0001t0002g0049 a0001c0001t0002g0060 a0001c0001t0003g0090 a0001c0001t0005g0007 a0001c0001t0005g0012 a0001c0001t0008g0069 a0001c0001t0009g0074 a0001c0001t0010g0014 a0001c0001t0011g0098 a0001c0001t0019g0065 a0001c0001t0024g0077 a0001c0002t0001g0027 a0001c0002t0001g0068 a0001c0002t0001g0073 a0001c0002t0004g0072 a0001c0002t0004g0079 a0001c0002t0006g0093 a0001c0002t0034g0084 a0001c0002t0039g0059 a0001c0003t0025g0015 a0001c0006t0001g0016 a0001c0006t0037g0021 a0001c0009t0015g0038 a0001c0009t0017g0037 a0001c0012t0009g0078 a0001c0016t0007g0089 a0001c0017t0008g0092 a0001c0018t0049g0080 a0002c0004t0006g0024 a0002c0007t0008g0011 a0002c0007t0018g0028 a0002c0007t0023g0085 a0002c0013t0041g0081 a0002c0020t0001g0022 a0003c0015t0002g0075	37	98	0.3776	6	c.163 others(25): Show c.163+41583_163+41588dupCACACA	AGAP1	ENSG00000157985.20	transcript	ENST00000304032.13	protein_coding	1/17		INFO_REALIGN_3_PRIME	chr2	TogoVar
AGAP1_chr2_235489043_236136793	235536468	T T	TACACAC TACACAC	intron_variant intron_variant	MODIFIER	HG01884.hp1 HG02109.hp1 HG03453.hp1 HG01884.hp1 HG02109.hp1 HG03453.hp1	a0001 a0001	a0001c0003 a0001c0005 a0001c0003 a0001c0005	a0001c0003t0009 a0001c0005t0001 a0001c0005t0004 a0001c0003t0009 a0001c0005t0001 a0001c0005t0004	a0001c0003t0009g0096 a0001c0005t0001g0057 a0001c0005t0004g0058 a0001c0003t0009g0096 a0001c0005t0001g0057 a0001c0005t0004g0058	3	98	0.0306	6	c.163 others(25): Show c.163+41641_163+41646dupCACACA	AGAP1	ENSG00000157985.20	transcript	ENST00000304032.13	protein_coding	1/17		INFO_REALIGN_3_PRIME	chr2	TogoVar
AGAP1_chr2_235489043_236136793	235538427	A A	ATGTGTG ATGTGTG	intron_variant intron_variant	MODIFIER	HG03195.hp1 HG03516.hp1 HG03831.hp2 others(2): Show HG03195.hp1 HG03516.hp1 HG03831.hp2 NA19011.hp1 NA19011.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0001c0002 a0001c0003 others(2): Show a0001c0001 a0001c0002 a0001c0003 a0001c0006 a0002c0007	a0001c0001t0005 a0001c0002t0001 a0001c0003t0021 others(2): Show a0001c0001t0005 a0001c0002t0001 a0001c0003t0021 a0001c0006t0001 a0002c0007t0005	a0001c0001t0005g0007 a0001c0002t0001g0018 a0001c0003t0021g0023 others(2): Show a0001c0001t0005g0007 a0001c0002t0001g0018 a0001c0003t0021g0023 a0001c0006t0001g0016 a0002c0007t0005g0094	5	98	0.0510	6	c.163 others(25): Show c.163+43607_163+43612dupTGTGTG	AGAP1	ENSG00000157985.20	transcript	ENST00000304032.13	protein_coding	1/17		INFO_REALIGN_3_PRIME	chr2	TogoVar
AGAP1_chr2_235489043_236136793	235571932	T T	TTGTGTG TTGTGTG	intron_variant intron_variant	MODIFIER	HG01884.hp2 HG02109.hp1 HG02145.hp1 others(9): Show HG01884.hp2 HG02109.hp1 HG02145.hp1 HG02145.hp2 HG02647.hp2 HG02896.hp1 HG03486.hp1 HG03540.hp2 NA18522.hp1 NA18906.hp1 NA19240.hp1 NA19240.hp2	a0001 a0003 a0001 a0003	a0001c0001 a0001c0002 a0001c0003 others(3): Show a0001c0001 a0001c0002 a0001c0003 a0001c0005 a0001c0008 a0003c0015	a0001c0001t0002 a0001c0001t0009 a0001c0001t0010 others(8): Show a0001c0001t0002 a0001c0001t0009 a0001c0001t0010 a0001c0001t0027 a0001c0002t0001 a0001c0003t0009 a0001c0003t0020 a0001c0003t0025 a0001c0005t0004 a0001c0008t0028 a0003c0015t0002	a0001c0001t0002g0049 a0001c0001t0009g0074 a0001c0001t0010g0003 others(9): Show a0001c0001t0002g0049 a0001c0001t0009g0074 a0001c0001t0010g0003 a0001c0001t0010g0014 a0001c0001t0027g0062 a0001c0002t0001g0073 a0001c0003t0009g0096 a0001c0003t0020g0053 a0001c0003t0025g0015 a0001c0005t0004g0088 a0001c0008t0028g0029 a0003c0015t0002g0075	12	98	0.1225	6	c.163 others(25): Show c.163+77105_163+77110dupGTGTGT	AGAP1	ENSG00000157985.20	transcript	ENST00000304032.13	protein_coding	1/17		INFO_REALIGN_3_PRIME	chr2	TogoVar
AGAP1_chr2_235489043_236136793	235571975	T T	TACACAC TACACAC	intron_variant intron_variant	MODIFIER	HG02280.hp2 HG02723.hp2 HG02896.hp1 others(7): Show HG02280.hp2 HG02723.hp2 HG02896.hp1 HG03195.hp2 HG03486.hp1 HG03540.hp2 HG03579.hp2 NA18906.hp1 NA19030.hp1 NA19030.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0003 others(3): Show a0001c0001 a0001c0002 a0001c0003 a0001c0005 a0001c0008 a0001c0010	a0001c0001t0002 a0001c0001t0003 a0001c0001t0010 others(6): Show a0001c0001t0002 a0001c0001t0003 a0001c0001t0010 a0001c0002t0001 a0001c0003t0012 a0001c0003t0025 a0001c0005t0040 a0001c0008t0001 a0001c0010t0001	a0001c0001t0002g0049 a0001c0001t0003g0034 a0001c0001t0003g0036 others(7): Show a0001c0001t0002g0049 a0001c0001t0003g0034 a0001c0001t0003g0036 a0001c0001t0010g0014 a0001c0002t0001g0073 a0001c0003t0012g0066 a0001c0003t0025g0015 a0001c0005t0040g0006 a0001c0008t0001g0061 a0001c0010t0001g0032	10	98	0.1020	6	c.163 others(25): Show c.163+77149_163+77154dupACACAC	AGAP1	ENSG00000157985.20	transcript	ENST00000304032.13	protein_coding	1/17		INFO_REALIGN_3_PRIME	chr2	TogoVar
AGAP1_chr2_235489043_236136793	235590665	A A	ATGTGTG ATGTGTG	intron_variant intron_variant	MODIFIER	HG00741.hp1 HG01106.hp2 HG01168.hp1 others(17): Show HG00741.hp1 HG01106.hp2 HG01168.hp1 HG01192.hp2 HG01358.hp1 HG01884.hp2 HG02080.hp2 HG02280.hp2 HG02723.hp2 HG02809.hp2 HG02976.hp2 HG03041.hp1 HG03139.hp1 HG03453.hp1 HG03579.hp2 HG03831.hp1 HG04199.hp1 NA18906.hp2 NA19030.hp1 NA19030.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0001c0002 a0001c0003 others(5): Show a0001c0001 a0001c0002 a0001c0003 a0001c0005 a0001c0006 a0001c0010 a0002c0004 a0002c0007	a0001c0001t0002 a0001c0001t0003 a0001c0001t0005 others(14): Show a0001c0001t0002 a0001c0001t0003 a0001c0001t0005 a0001c0001t0009 a0001c0002t0001 a0001c0002t0032 a0001c0003t0002 a0001c0003t0003 a0001c0003t0012 a0001c0005t0004 a0001c0005t0040 a0001c0006t0046 a0001c0010t0001 a0002c0004t0006 a0002c0004t0029 a0002c0004t0045 a0002c0007t0005	a0001c0001t0002g0046 a0001c0001t0003g0034 a0001c0001t0003g0036 others(17): Show a0001c0001t0002g0046 a0001c0001t0003g0034 a0001c0001t0003g0036 a0001c0001t0005g0012 a0001c0001t0009g0074 a0001c0002t0001g0004 a0001c0002t0001g0030 a0001c0002t0001g0068 a0001c0002t0032g0051 a0001c0003t0002g0005 a0001c0003t0003g0001 a0001c0003t0012g0066 a0001c0005t0004g0058 a0001c0005t0040g0006 a0001c0006t0046g0040 a0001c0010t0001g0032 a0002c0004t0006g0042 a0002c0004t0029g0083 a0002c0004t0045g0039 a0002c0007t0005g0026	20	98	0.2041	6	c.163 others(25): Show c.163+95831_163+95836dupTGTGTG	AGAP1	ENSG00000157985.20	transcript	ENST00000304032.13	protein_coding	1/17		INFO_REALIGN_3_PRIME	chr2	TogoVar
AGAP1_chr2_235489043_236136793	235634952	T T	TCCTCAC TCCTCAC	intron_variant intron_variant	MODIFIER	HG02647.hp2 HG02896.hp1 HG03486.hp1 others(3): Show HG02647.hp2 HG02896.hp1 HG03486.hp1 HG03516.hp2 HG03540.hp2 NA18906.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0003 others(2): Show a0001c0001 a0001c0002 a0001c0003 a0001c0005 a0001c0019	a0001c0001t0002 a0001c0001t0010 a0001c0002t0001 others(3): Show a0001c0001t0002 a0001c0001t0010 a0001c0002t0001 a0001c0003t0025 a0001c0005t0004 a0001c0019t0007	a0001c0001t0002g0049 a0001c0001t0010g0014 a0001c0002t0001g0073 others(3): Show a0001c0001t0002g0049 a0001c0001t0010g0014 a0001c0002t0001g0073 a0001c0003t0025g0015 a0001c0005t0004g0088 a0001c0019t0007g0056	6	98	0.0612	6	c.164 others(25): Show c.164-74221_164-74216dupCCCTCA	AGAP1	ENSG00000157985.20	transcript	ENST00000304032.13	protein_coding	1/17		INFO_REALIGN_3_PRIME	chr2	TogoVar
AGAP1_chr2_235489043_236136793	235682797	C C	CGTGTGT CGTGTGT	intron_variant intron_variant	MODIFIER	HG02630.hp1 HG02647.hp1 HG03486.hp2 others(1): Show HG02630.hp1 HG02647.hp1 HG03486.hp2 HG03516.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0003 others(1): Show a0001c0001 a0001c0002 a0001c0003 a0001c0019	a0001c0001t0003 a0001c0002t0042 a0001c0003t0047 others(1): Show a0001c0001t0003 a0001c0002t0042 a0001c0003t0047 a0001c0019t0007	a0001c0001t0003g0063 a0001c0002t0042g0067 a0001c0003t0047g0033 others(1): Show a0001c0001t0003g0063 a0001c0002t0042g0067 a0001c0003t0047g0033 a0001c0019t0007g0056	4	98	0.0408	6	c.164 others(25): Show c.164-26365_164-26360dupGTGTGT	AGAP1	ENSG00000157985.20	transcript	ENST00000304032.13	protein_coding	1/17		INFO_REALIGN_3_PRIME	chr2	TogoVar
AGAP1_chr2_235489043_236136793	235686550	T T	TACACAC TACACAC	intron_variant intron_variant	MODIFIER	HG02647.hp1 HG03579.hp1 HG02647.hp1 HG03579.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0026 a0001c0002t0042 a0001c0001t0026 a0001c0002t0042	a0001c0001t0026g0095 a0001c0002t0042g0067 a0001c0001t0026g0095 a0001c0002t0042g0067	2	98	0.0204	6	c.164 others(25): Show c.164-22628_164-22627insCACACA	AGAP1	ENSG00000157985.20	transcript	ENST00000304032.13	protein_coding	1/17		INFO_REALIGN_3_PRIME	chr2	TogoVar
AGAP1_chr2_235489043_236136793	235686554	T T	TACACAC TACACAC	intron_variant intron_variant	MODIFIER	HG02622.hp1 HG03453.hp1 HG02622.hp1 HG03453.hp1	a0001 a0002 a0001 a0002	a0001c0005 a0002c0013 a0001c0005 a0002c0013	a0001c0005t0004 a0002c0013t0041 a0001c0005t0004 a0002c0013t0041	a0001c0005t0004g0058 a0002c0013t0041g0081 a0001c0005t0004g0058 a0002c0013t0041g0081	2	98	0.0204	6	c.164 others(25): Show c.164-22624_164-22623insCACACA	AGAP1	ENSG00000157985.20	transcript	ENST00000304032.13	protein_coding	1/17		INFO_REALIGN_3_PRIME	chr2	TogoVar
AGAP1_chr2_235489043_236136793	235686556	T T	TACACAC TACACAC	intron_variant intron_variant	MODIFIER	HG01884.hp1 HG02145.hp1 HG02572.hp1 others(8): Show HG01884.hp1 HG02145.hp1 HG02572.hp1 HG02572.hp2 HG02622.hp2 HG02630.hp2 HG02723.hp1 HG03195.hp2 HG03540.hp2 NA19240.hp1 NA19240.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0003 others(3): Show a0001c0001 a0001c0002 a0001c0003 a0001c0005 a0001c0008 a0001c0011	a0001c0001t0002 a0001c0001t0027 a0001c0002t0043 others(7): Show a0001c0001t0002 a0001c0001t0027 a0001c0002t0043 a0001c0003t0020 a0001c0003t0025 a0001c0005t0001 a0001c0005t0004 a0001c0008t0001 a0001c0008t0028 a0001c0011t0036	a0001c0001t0002g0060 a0001c0001t0002g0070 a0001c0001t0027g0062 others(8): Show a0001c0001t0002g0060 a0001c0001t0002g0070 a0001c0001t0027g0062 a0001c0002t0043g0064 a0001c0003t0020g0053 a0001c0003t0025g0015 a0001c0005t0001g0057 a0001c0005t0004g0097 a0001c0008t0001g0061 a0001c0008t0028g0029 a0001c0011t0036g0009	11	98	0.1122	6	c.164 others(25): Show c.164-22596_164-22591dupACACAC	AGAP1	ENSG00000157985.20	transcript	ENST00000304032.13	protein_coding	1/17		INFO_REALIGN_3_PRIME	chr2	TogoVar
AGAP1_chr2_235489043_236136793	235686556	T T	TATACAC TATACAC	intron_variant intron_variant	MODIFIER	HG01496.hp2 HG02809.hp1 NA19030.hp1 HG01496.hp2 HG02809.hp1 NA19030.hp1	a0001 a0001	a0001c0001 a0001c0005 a0001c0001 a0001c0005	a0001c0001t0003 a0001c0005t0013 a0001c0005t0031 a0001c0001t0003 a0001c0005t0013 a0001c0005t0031	a0001c0001t0003g0036 a0001c0005t0013g0050 a0001c0005t0031g0031 a0001c0001t0003g0036 a0001c0005t0013g0050 a0001c0005t0031g0031	3	98	0.0306	6	c.164 others(25): Show c.164-22622_164-22621insTACACA	AGAP1	ENSG00000157985.20	transcript	ENST00000304032.13	protein_coding	1/17		INFO_REALIGN_3_PRIME	chr2	TogoVar
AGAP1_chr2_235489043_236136793	235702934	G G	GTTTTTT GTTTTTT	intron_variant intron_variant	MODIFIER	HG01496.hp2 HG01884.hp1 HG02109.hp1 others(19): Show HG01496.hp2 HG01884.hp1 HG02109.hp1 HG02280.hp1 HG02280.hp2 HG02572.hp1 HG02622.hp1 HG02622.hp2 HG02630.hp2 HG02647.hp2 HG02809.hp1 HG02976.hp2 HG03139.hp1 HG03195.hp1 HG03453.hp1 HG03453.hp2 HG03486.hp2 HG03540.hp2 HG03579.hp2 NA19030.hp2 NA19240.hp1 NA20129.hp1	a0001 a0002 a0001 a0002	a0001c0002 a0001c0003 a0001c0005 others(5): Show a0001c0002 a0001c0003 a0001c0005 a0001c0010 a0001c0011 a0001c0012 a0001c0014 a0002c0013	a0001c0002t0043 a0001c0003t0002 a0001c0003t0003 others(17): Show a0001c0002t0043 a0001c0003t0002 a0001c0003t0003 a0001c0003t0009 a0001c0003t0012 a0001c0003t0020 a0001c0003t0021 a0001c0003t0022 a0001c0003t0025 a0001c0003t0047 a0001c0005t0001 a0001c0005t0004 a0001c0005t0013 a0001c0005t0031 a0001c0005t0040 a0001c0010t0001 a0001c0011t0036 a0001c0012t0009 a0001c0014t0016 a0002c0013t0041	a0001c0002t0043g0064 a0001c0003t0002g0005 a0001c0003t0003g0001 others(19): Show a0001c0002t0043g0064 a0001c0003t0002g0005 a0001c0003t0003g0001 a0001c0003t0009g0096 a0001c0003t0012g0066 a0001c0003t0020g0053 a0001c0003t0021g0023 a0001c0003t0022g0055 a0001c0003t0025g0015 a0001c0003t0047g0033 a0001c0005t0001g0057 a0001c0005t0004g0058 a0001c0005t0004g0088 a0001c0005t0004g0097 a0001c0005t0013g0050 a0001c0005t0031g0031 a0001c0005t0040g0006 a0001c0010t0001g0032 a0001c0011t0036g0009 a0001c0012t0009g0078 a0001c0014t0016g0048 a0002c0013t0041g0081	22	98	0.2245	6	c.164 others(23): Show c.164-6238_164-6233dupTTTTTT	AGAP1	ENSG00000157985.20	transcript	ENST00000304032.13	protein_coding	1/17		INFO_REALIGN_3_PRIME	chr2	TogoVar
AGAP1_chr2_235489043_236136793	235721477	A A	ATGTGTG ATGTGTG	intron_variant intron_variant	MODIFIER	HG02818.hp2 HG03098.hp2 HG03486.hp1 HG02818.hp2 HG03098.hp2 HG03486.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0018 a0001c0001 a0001c0002 a0001c0018	a0001c0001t0002 a0001c0002t0004 a0001c0018t0049 a0001c0001t0002 a0001c0002t0004 a0001c0018t0049	a0001c0001t0002g0049 a0001c0002t0004g0079 a0001c0018t0049g0080 a0001c0001t0002g0049 a0001c0002t0004g0079 a0001c0018t0049g0080	3	98	0.0306	6	c.310 others(23): Show c.310+3855_310+3860dupGTGTGT	AGAP1	ENSG00000157985.20	transcript	ENST00000304032.13	protein_coding	3/17		INFO_REALIGN_3_PRIME	chr2	TogoVar
AGAP1_chr2_235489043_236136793	235746377	C C	CTTTTTT CTTTTTT	intron_variant intron_variant	MODIFIER	HG01123.hp1 HG01358.hp2 HG01928.hp1 others(2): Show HG01123.hp1 HG01358.hp2 HG01928.hp1 HG02922.hp1 HG03540.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0001c0003 a0001c0021 others(1): Show a0001c0001 a0001c0003 a0001c0021 a0002c0004	a0001c0001t0002 a0001c0003t0025 a0001c0021t0002 others(2): Show a0001c0001t0002 a0001c0003t0025 a0001c0021t0002 a0002c0004t0006 a0002c0004t0030	a0001c0001t0002g0002 a0001c0003t0025g0015 a0001c0021t0002g0091 others(2): Show a0001c0001t0002g0002 a0001c0003t0025g0015 a0001c0021t0002g0091 a0002c0004t0006g0024 a0002c0004t0030g0045	5	98	0.0510	6	c.538 others(23): Show c.538+1567_538+1572dupTTTTTT	AGAP1	ENSG00000157985.20	transcript	ENST00000304032.13	protein_coding	5/17		INFO_REALIGN_3_PRIME	chr2	TogoVar
AGAP1_chr2_235489043_236136793	235783022	T T	TTGTGTG TTGTGTG	intron_variant intron_variant	MODIFIER	HG01168.hp1 HG02280.hp1 HG02572.hp1 others(9): Show HG01168.hp1 HG02280.hp1 HG02572.hp1 HG02630.hp2 HG02723.hp1 HG03098.hp1 HG03139.hp2 HG03471.hp1 HG03516.hp1 HG03540.hp2 NA18522.hp2 NA20300.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0001c0002 a0001c0003 others(4): Show a0001c0001 a0001c0002 a0001c0003 a0001c0005 a0001c0011 a0001c0012 a0002c0004	a0001c0001t0002 a0001c0001t0005 a0001c0001t0011 others(9): Show a0001c0001t0002 a0001c0001t0005 a0001c0001t0011 a0001c0001t0048 a0001c0002t0004 a0001c0002t0013 a0001c0002t0038 a0001c0003t0025 a0001c0005t0004 a0001c0011t0036 a0001c0012t0009 a0002c0004t0029	a0001c0001t0002g0070 a0001c0001t0005g0007 a0001c0001t0011g0098 others(9): Show a0001c0001t0002g0070 a0001c0001t0005g0007 a0001c0001t0011g0098 a0001c0001t0048g0054 a0001c0002t0004g0072 a0001c0002t0013g0035 a0001c0002t0038g0086 a0001c0003t0025g0015 a0001c0005t0004g0097 a0001c0011t0036g0009 a0001c0012t0009g0078 a0002c0004t0029g0083	12	98	0.1225	6	c.674 others(25): Show c.674-14713_674-14708dupGTGTGT	AGAP1	ENSG00000157985.20	transcript	ENST00000304032.13	protein_coding	6/17		INFO_REALIGN_3_PRIME	chr2	TogoVar
AGAP1_chr2_235489043_236136793	235802801	T T	TGTGATG TGTGATG	intron_variant intron_variant	MODIFIER	HG01884.hp1 HG02083.hp2 HG02109.hp1 others(10): Show HG01884.hp1 HG02083.hp2 HG02109.hp1 HG02717.hp2 HG02723.hp2 HG02809.hp1 HG02976.hp2 HG03139.hp1 HG03453.hp2 HG03486.hp2 HG03579.hp2 NA18522.hp2 NA21309.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0003 others(2): Show a0001c0001 a0001c0002 a0001c0003 a0001c0005 a0001c0014	a0001c0001t0003 a0001c0001t0024 a0001c0002t0001 others(9): Show a0001c0001t0003 a0001c0001t0024 a0001c0002t0001 a0001c0002t0004 a0001c0003t0002 a0001c0003t0003 a0001c0003t0009 a0001c0003t0012 a0001c0003t0047 a0001c0005t0001 a0001c0005t0031 a0001c0014t0016	a0001c0001t0003g0034 a0001c0001t0003g0090 a0001c0001t0024g0077 others(10): Show a0001c0001t0003g0034 a0001c0001t0003g0090 a0001c0001t0024g0077 a0001c0002t0001g0027 a0001c0002t0004g0072 a0001c0003t0002g0005 a0001c0003t0003g0001 a0001c0003t0009g0096 a0001c0003t0012g0066 a0001c0003t0047g0033 a0001c0005t0001g0057 a0001c0005t0031g0031 a0001c0014t0016g0048	13	98	0.1327	6	c.957 others(23): Show c.957+3282_957+3283insATGGTG	AGAP1	ENSG00000157985.20	transcript	ENST00000304032.13	protein_coding	8/17		INFO_REALIGN_3_PRIME	chr2	TogoVar
AGAP1_chr2_235489043_236136793	235867536	A A	AGTGTGT AGTGTGT	intron_variant intron_variant	MODIFIER	HG00438.hp1 HG02615.hp2 HG02818.hp1 others(9): Show HG00438.hp1 HG02615.hp2 HG02818.hp1 HG02818.hp2 HG02976.hp1 HG03195.hp1 HG03516.hp2 HG03540.hp1 NA18906.hp2 NA19011.hp1 NA19240.hp1 NA20129.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0003 others(3): Show a0001c0001 a0001c0002 a0001c0003 a0001c0009 a0001c0016 a0001c0019	a0001c0001t0002 a0001c0001t0008 a0001c0001t0012 others(8): Show a0001c0001t0002 a0001c0001t0008 a0001c0001t0012 a0001c0002t0001 a0001c0002t0004 a0001c0003t0020 a0001c0003t0021 a0001c0003t0022 a0001c0009t0017 a0001c0016t0007 a0001c0019t0007	a0001c0001t0002g0047 a0001c0001t0008g0069 a0001c0001t0012g0071 others(9): Show a0001c0001t0002g0047 a0001c0001t0008g0069 a0001c0001t0012g0071 a0001c0002t0001g0004 a0001c0002t0001g0018 a0001c0002t0004g0079 a0001c0003t0020g0053 a0001c0003t0021g0023 a0001c0003t0022g0055 a0001c0009t0017g0037 a0001c0016t0007g0089 a0001c0019t0007g0056	12	98	0.1225	6	c.105 others(27): Show c.1051-15775_1051-15770dupTGTGTG	AGAP1	ENSG00000157985.20	transcript	ENST00000304032.13	protein_coding	9/17		INFO_REALIGN_3_PRIME	chr2	TogoVar
AGAP1_chr2_235489043_236136793	235867572	T T	TGTGTGC TGTGTGC	intron_variant intron_variant	MODIFIER	HG01168.hp2 HG01928.hp2 NA20300.hp2 HG01168.hp2 HG01928.hp2 NA20300.hp2	a0001 a0002 a0001 a0002	a0001c0002 a0002c0004 a0002c0020 a0001c0002 a0002c0004 a0002c0020	a0001c0002t0006 a0002c0004t0001 a0002c0020t0001 a0001c0002t0006 a0002c0004t0001 a0002c0020t0001	a0001c0002t0006g0093 a0002c0004t0001g0025 a0002c0020t0001g0022 a0001c0002t0006g0093 a0002c0004t0001g0025 a0002c0020t0001g0022	3	98	0.0306	6	c.105 others(27): Show c.1051-15770_1051-15769insTGCGTG	AGAP1	ENSG00000157985.20	transcript	ENST00000304032.13	protein_coding	9/17		INFO_REALIGN_3_PRIME	chr2	TogoVar
AGAP1_chr2_235489043_236136793	235884860	A A	ACAGCAG ACAGCAG	intron_variant intron_variant	MODIFIER	HG00438.hp1 HG00642.hp1 HG01106.hp2 others(27): Show HG00438.hp1 HG00642.hp1 HG01106.hp2 HG01168.hp1 HG01192.hp2 HG01496.hp1 HG02080.hp1 HG02080.hp2 HG02083.hp1 HG02083.hp2 HG02135.hp2 HG02145.hp2 HG02647.hp2 HG02717.hp1 HG02818.hp1 HG02818.hp2 HG02922.hp1 HG02976.hp1 HG03471.hp2 HG03486.hp1 HG03516.hp2 HG03540.hp1 HG03579.hp1 HG03831.hp2 HG04199.hp2 NA18522.hp1 NA18906.hp2 NA19011.hp1 NA19240.hp1 NA20129.hp1	a0001 a0002 a0003 a0001 a0002 a0003	a0001c0001 a0001c0002 a0001c0003 others(9): Show a0001c0001 a0001c0002 a0001c0003 a0001c0005 a0001c0009 a0001c0016 a0001c0017 a0001c0019 a0001c0021 a0002c0004 a0002c0007 a0003c0015	a0001c0001t0002 a0001c0001t0005 a0001c0001t0007 others(23): Show a0001c0001t0002 a0001c0001t0005 a0001c0001t0007 a0001c0001t0008 a0001c0001t0010 a0001c0001t0026 a0001c0002t0001 a0001c0002t0004 a0001c0002t0034 a0001c0003t0020 a0001c0003t0022 a0001c0005t0004 a0001c0009t0015 a0001c0009t0017 a0001c0016t0007 a0001c0017t0008 a0001c0019t0007 a0001c0021t0002 a0002c0004t0001 a0002c0004t0006 a0002c0004t0029 a0002c0004t0045 a0002c0007t0005 a0002c0007t0008 a0002c0007t0018 a0003c0015t0002	a0001c0001t0002g0047 a0001c0001t0002g0049 a0001c0001t0005g0012 others(27): Show a0001c0001t0002g0047 a0001c0001t0002g0049 a0001c0001t0005g0012 a0001c0001t0007g0008 a0001c0001t0008g0069 a0001c0001t0010g0003 a0001c0001t0026g0095 a0001c0002t0001g0004 a0001c0002t0001g0010 a0001c0002t0001g0018 a0001c0002t0001g0027 a0001c0002t0004g0079 a0001c0002t0034g0084 a0001c0003t0020g0053 a0001c0003t0022g0055 a0001c0005t0004g0088 a0001c0009t0015g0038 a0001c0009t0017g0037 a0001c0016t0007g0089 a0001c0017t0008g0092 a0001c0019t0007g0056 a0001c0021t0002g0091 a0002c0004t0001g0082 a0002c0004t0006g0042 a0002c0004t0029g0083 a0002c0004t0045g0039 a0002c0007t0005g0094 a0002c0007t0008g0011 a0002c0007t0018g0028 a0003c0015t0002g0075	30	98	0.3061	6	c.115 others(25): Show c.1155+1430_1155+1435dupCAGCAG	AGAP1	ENSG00000157985.20	transcript	ENST00000304032.13	protein_coding	10/17		INFO_REALIGN_3_PRIME	chr2	TogoVar
AGAP1_chr2_235489043_236136793	235894616	A A	AACATAC AACATAC	intron_variant intron_variant	MODIFIER	HG01106.hp2 HG02615.hp1 HG02615.hp2 others(10): Show HG01106.hp2 HG02615.hp1 HG02615.hp2 HG02630.hp2 HG02647.hp1 HG02896.hp2 HG03041.hp2 HG03098.hp1 HG03195.hp1 HG03831.hp1 HG04199.hp1 NA19030.hp1 NA21309.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0001c0002 a0001c0003 others(3): Show a0001c0001 a0001c0002 a0001c0003 a0001c0011 a0002c0004 a0002c0007	a0001c0001t0003 a0001c0001t0012 a0001c0001t0019 others(10): Show a0001c0001t0003 a0001c0001t0012 a0001c0001t0019 a0001c0001t0024 a0001c0002t0001 a0001c0002t0014 a0001c0002t0038 a0001c0002t0039 a0001c0002t0042 a0001c0003t0021 a0001c0011t0036 a0002c0004t0045 a0002c0007t0005	a0001c0001t0003g0036 a0001c0001t0012g0071 a0001c0001t0019g0065 others(10): Show a0001c0001t0003g0036 a0001c0001t0012g0071 a0001c0001t0019g0065 a0001c0001t0024g0077 a0001c0002t0001g0068 a0001c0002t0014g0076 a0001c0002t0038g0086 a0001c0002t0039g0059 a0001c0002t0042g0067 a0001c0003t0021g0023 a0001c0011t0036g0009 a0002c0004t0045g0039 a0002c0007t0005g0026	13	98	0.1327	6	c.115 others(27): Show c.1155+11172_1155+11177dupACACAT	AGAP1	ENSG00000157985.20	transcript	ENST00000304032.13	protein_coding	10/17		INFO_REALIGN_3_PRIME	chr2	TogoVar
AGAP1_chr2_235489043_236136793	235943362	A A	ATTTTTT ATTTTTT	intron_variant intron_variant	MODIFIER	HG00642.hp1 HG00741.hp1 HG00741.hp2 others(37): Show HG00642.hp1 HG00741.hp1 HG00741.hp2 HG01106.hp2 HG01123.hp2 HG01358.hp1 HG01496.hp1 HG01928.hp1 HG01928.hp2 HG02080.hp1 HG02080.hp2 HG02083.hp1 HG02083.hp2 HG02109.hp1 HG02109.hp2 HG02135.hp1 HG02145.hp1 HG02280.hp1 HG02622.hp1 HG02647.hp2 HG02809.hp2 HG02896.hp2 HG02922.hp2 HG02976.hp1 HG02976.hp2 HG03041.hp2 HG03195.hp2 HG03453.hp1 HG03471.hp2 HG03486.hp1 HG03540.hp1 HG03579.hp2 HG03831.hp2 HG04199.hp2 NA18906.hp1 NA18906.hp2 NA19011.hp1 NA19011.hp2 NA19030.hp1 NA20129.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0001c0002 a0001c0003 others(10): Show a0001c0001 a0001c0002 a0001c0003 a0001c0005 a0001c0006 a0001c0008 a0001c0009 a0001c0012 a0001c0016 a0001c0017 a0002c0004 a0002c0007 a0002c0013	a0001c0001t0002 a0001c0001t0003 a0001c0001t0005 others(30): Show a0001c0001t0002 a0001c0001t0003 a0001c0001t0005 a0001c0001t0010 a0001c0001t0011 a0001c0001t0019 a0001c0002t0001 a0001c0002t0006 a0001c0002t0014 a0001c0002t0032 a0001c0002t0039 a0001c0003t0003 a0001c0003t0009 a0001c0003t0012 a0001c0003t0022 a0001c0005t0004 a0001c0006t0001 a0001c0006t0006 a0001c0006t0033 a0001c0006t0046 a0001c0008t0001 a0001c0008t0028 a0001c0009t0015 a0001c0012t0009 a0001c0016t0007 a0001c0017t0008 a0002c0004t0001 a0002c0004t0006 a0002c0004t0045 a0002c0007t0005 a0002c0007t0008 a0002c0007t0018 a0002c0013t0041	a0001c0001t0002g0047 a0001c0001t0002g0049 a0001c0001t0003g0036 others(37): Show a0001c0001t0002g0047 a0001c0001t0002g0049 a0001c0001t0003g0036 a0001c0001t0005g0012 a0001c0001t0010g0014 a0001c0001t0011g0020 a0001c0001t0019g0065 a0001c0002t0001g0004 a0001c0002t0001g0010 a0001c0002t0001g0018 a0001c0002t0001g0027 a0001c0002t0001g0030 a0001c0002t0006g0093 a0001c0002t0014g0052 a0001c0002t0032g0051 a0001c0002t0039g0059 a0001c0003t0003g0001 a0001c0003t0009g0096 a0001c0003t0012g0066 a0001c0003t0022g0055 a0001c0005t0004g0058 a0001c0005t0004g0088 a0001c0006t0001g0016 a0001c0006t0006g0019 a0001c0006t0033g0087 a0001c0006t0046g0040 a0001c0008t0001g0061 a0001c0008t0028g0029 a0001c0009t0015g0038 a0001c0012t0009g0078 a0001c0016t0007g0089 a0001c0017t0008g0092 a0002c0004t0001g0043 a0002c0004t0001g0082 a0002c0004t0006g0024 a0002c0004t0045g0039 a0002c0007t0005g0094 a0002c0007t0008g0011 a0002c0007t0018g0028 a0002c0013t0041g0081	40	98	0.4082	6	c.148 others(27): Show c.1483+12453_1483+12458dupTTTTTT	AGAP1	ENSG00000157985.20	transcript	ENST00000304032.13	protein_coding	12/17		INFO_REALIGN_3_PRIME	chr2	TogoVar
AGAP1_chr2_235489043_236136793	236012764	A A	AATTATT AATTATT	intron_variant intron_variant	MODIFIER	HG01358.hp2 HG02080.hp2 HG02647.hp2 others(4): Show HG01358.hp2 HG02080.hp2 HG02647.hp2 HG02723.hp1 HG03098.hp2 HG03195.hp2 NA19030.hp1	a0001 a0001	a0001c0001 a0001c0005 a0001c0008 others(1): Show a0001c0001 a0001c0005 a0001c0008 a0001c0018	a0001c0001t0002 a0001c0001t0003 a0001c0001t0005 others(3): Show a0001c0001t0002 a0001c0001t0003 a0001c0001t0005 a0001c0005t0004 a0001c0008t0001 a0001c0018t0049	a0001c0001t0002g0002 a0001c0001t0002g0070 a0001c0001t0003g0036 others(4): Show a0001c0001t0002g0002 a0001c0001t0002g0070 a0001c0001t0003g0036 a0001c0001t0005g0012 a0001c0005t0004g0088 a0001c0008t0001g0061 a0001c0018t0049g0080	7	98	0.0714	6	c.164 others(27): Show c.1646-23775_1646-23770dupATTATT	AGAP1	ENSG00000157985.20	transcript	ENST00000304032.13	protein_coding	13/17		INFO_REALIGN_3_PRIME	chr2	TogoVar
AGAP1_chr2_235489043_236136793	236059429	A A	AGCTGCC AGCTGCC	intron_variant intron_variant	MODIFIER	HG02818.hp2 HG03041.hp2 HG03579.hp1 others(1): Show HG02818.hp2 HG03041.hp2 HG03579.hp1 NA20300.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0019 a0001c0001t0026 a0001c0002t0004 others(1): Show a0001c0001t0019 a0001c0001t0026 a0001c0002t0004 a0001c0002t0013	a0001c0001t0019g0065 a0001c0001t0026g0095 a0001c0002t0004g0079 others(1): Show a0001c0001t0019g0065 a0001c0001t0026g0095 a0001c0002t0004g0079 a0001c0002t0013g0035	4	98	0.0408	6	c.211 others(27): Show c.2114+10149_2114+10154dupGCTGCC	AGAP1	ENSG00000157985.20	transcript	ENST00000304032.13	protein_coding	16/17		INFO_REALIGN_3_PRIME	chr2	TogoVar
AGAP1_chr2_235489043_236136793	236078037	T T	TTGTGTG TTGTGTG	intron_variant intron_variant	MODIFIER	HG01496.hp2 HG01928.hp2 HG02080.hp2 others(7): Show HG01496.hp2 HG01928.hp2 HG02080.hp2 HG02135.hp1 HG02145.hp2 HG02622.hp2 HG03486.hp1 HG03516.hp2 HG04199.hp2 NA19240.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0005 others(3): Show a0001c0001 a0001c0002 a0001c0005 a0001c0006 a0001c0017 a0001c0019	a0001c0001t0002 a0001c0001t0005 a0001c0001t0010 others(7): Show a0001c0001t0002 a0001c0001t0005 a0001c0001t0010 a0001c0001t0027 a0001c0002t0006 a0001c0002t0043 a0001c0005t0013 a0001c0006t0006 a0001c0017t0008 a0001c0019t0007	a0001c0001t0002g0049 a0001c0001t0005g0012 a0001c0001t0010g0003 others(7): Show a0001c0001t0002g0049 a0001c0001t0005g0012 a0001c0001t0010g0003 a0001c0001t0027g0062 a0001c0002t0006g0093 a0001c0002t0043g0064 a0001c0005t0013g0050 a0001c0006t0006g0019 a0001c0017t0008g0092 a0001c0019t0007g0056	10	98	0.1020	6	c.211 others(27): Show c.2114+28788_2114+28793dupGTGTGT	AGAP1	ENSG00000157985.20	transcript	ENST00000304032.13	protein_coding	16/17		INFO_REALIGN_3_PRIME	chr2	TogoVar
AGAP3_chr7_151081475_151149434	151084842	T T	TACACAC TACACAC	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02258.hp2 NA18981.hp2 NA19083.hp2 HG02258.hp2 NA18981.hp2 NA19083.hp2	a0001 a0001	a0001c0001 a0001c0011 a0001c0001 a0001c0011	a0001c0001t0002 a0001c0001t0003 a0001c0011t0001 a0001c0001t0002 a0001c0001t0003 a0001c0011t0001	a0001c0001t0002g0309 a0001c0001t0003g0104 a0001c0011t0001g0219 a0001c0001t0002g0309 a0001c0001t0003g0104 a0001c0011t0001g0219	3	354	0.0085	6	c.-19 others(17): Show c.-1900_-1899insACACAC	AGAP3	ENSG00000133612.20	transcript	ENST00000397238.7	protein_coding		1632		chr7	TogoVar
AGAP3_chr7_151081475_151149434	151105776	G G	GCCCCCC GCCCCCC	intron_variant intron_variant	MODIFIER	HG00673.hp2 HG00733.hp2 HG01081.hp1 others(21): Show HG00673.hp2 HG00733.hp2 HG01081.hp1 HG01192.hp2 HG01243.hp2 HG01255.hp2 HG01261.hp2 HG01891.hp2 HG02004.hp1 HG02135.hp1 HG02717.hp1 HG02922.hp1 HG03139.hp1 HG03471.hp1 HG03834.hp2 HG04228.hp1 HG06807.hp2 NA18940.hp1 NA18944.hp2 NA18951.hp1 NA18964.hp2 NA18983.hp1 NA18993.hp2 NA18994.hp1	a0001 a0001	a0001c0001 a0001c0003 a0001c0006 others(1): Show a0001c0001 a0001c0003 a0001c0006 a0001c0009	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(4): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0006 a0001c0003t0006 a0001c0006t0001 a0001c0009t0001	a0001c0001t0001g0025 a0001c0001t0001g0031 a0001c0001t0001g0032 others(21): Show a0001c0001t0001g0025 a0001c0001t0001g0031 a0001c0001t0001g0032 a0001c0001t0001g0041 a0001c0001t0001g0043 a0001c0001t0001g0051 a0001c0001t0001g0063 a0001c0001t0001g0064 a0001c0001t0001g0065 a0001c0001t0001g0066 a0001c0001t0001g0067 a0001c0001t0001g0080 a0001c0001t0001g0081 a0001c0001t0001g0082 a0001c0001t0001g0084 a0001c0001t0001g0091 a0001c0001t0001g0092 a0001c0001t0001g0102 a0001c0001t0002g0139 a0001c0001t0003g0281 a0001c0001t0006g0341 a0001c0003t0006g0340 a0001c0006t0001g0019 a0001c0009t0001g0068	24	354	0.0678	6	c.332 others(25): Show c.332-11011_332-11006dupCCCCCC	AGAP3	ENSG00000133612.20	transcript	ENST00000397238.7	protein_coding	1/17		INFO_REALIGN_3_PRIME	chr7	TogoVar
AGAP3_chr7_151081475_151149434	151105792	C C	CCACACA CCACACA	intron_variant intron_variant	MODIFIER	HG00140.hp2 HG00673.hp1 HG01099.hp1 others(41): Show HG00140.hp2 HG00673.hp1 HG01099.hp1 HG01099.hp2 HG01109.hp2 HG01168.hp2 HG01169.hp2 HG01175.hp1 HG01243.hp2 HG01255.hp1 HG01516.hp1 HG01952.hp2 HG02109.hp1 HG02145.hp2 HG02258.hp1 HG02300.hp2 HG02572.hp2 HG02622.hp2 HG03017.hp1 HG03041.hp2 HG03486.hp2 HG03490.hp1 HG03490.hp2 HG03492.hp1 HG03492.hp2 HG03688.hp1 HG03834.hp2 HG04184.hp1 NA18747.hp2 NA18906.hp1 NA18941.hp2 NA18944.hp2 NA18952.hp2 NA18964.hp1 NA18964.hp2 NA18966.hp1 NA18967.hp1 NA18979.hp2 NA18994.hp1 NA19005.hp1 NA19065.hp2 NA19083.hp1 NA19087.hp1 NA19090.hp2	a0001 a0004 a0001 a0004	a0001c0001 a0001c0003 a0001c0006 others(1): Show a0001c0001 a0001c0003 a0001c0006 a0004c0016	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(4): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0004 a0001c0003t0001 a0001c0006t0001 a0004c0016t0001	a0001c0001t0001g0002 a0001c0001t0001g0003 a0001c0001t0001g0008 others(38): Show a0001c0001t0001g0002 a0001c0001t0001g0003 a0001c0001t0001g0008 a0001c0001t0001g0018 a0001c0001t0001g0026 a0001c0001t0001g0034 a0001c0001t0001g0038 a0001c0001t0001g0039 a0001c0001t0001g0040 a0001c0001t0001g0041 a0001c0001t0001g0043 a0001c0001t0001g0054 a0001c0001t0001g0058 a0001c0001t0001g0063 a0001c0001t0001g0064 a0001c0001t0001g0069 a0001c0001t0001g0075 a0001c0001t0001g0092 a0001c0001t0001g0094 a0001c0001t0001g0095 a0001c0001t0001g0105 a0001c0001t0001g0136 a0001c0001t0001g0177 a0001c0001t0001g0198 a0001c0001t0001g0214 a0001c0001t0001g0220 a0001c0001t0001g0237 a0001c0001t0001g0238 a0001c0001t0001g0239 a0001c0001t0001g0261 a0001c0001t0001g0263 a0001c0001t0001g0264 a0001c0001t0001g0287 a0001c0001t0001g0290 a0001c0001t0002g0298 a0001c0001t0002g0332 a0001c0001t0003g0106 a0001c0001t0004g0221 a0001c0003t0001g0137 a0001c0006t0001g0042 a0004c0016t0001g0052	44	354	0.1243	6	c.332 others(25): Show c.332-10966_332-10961dupCACACA	AGAP3	ENSG00000133612.20	transcript	ENST00000397238.7	protein_coding	1/17		INFO_REALIGN_3_PRIME	chr7	TogoVar
AGAP3_chr7_151081475_151149434	151112396	C C	CGTGTGT CGTGTGT	intron_variant intron_variant	MODIFIER	HG00323.hp2 HG01071.hp2 HG01255.hp2 others(9): Show HG00323.hp2 HG01071.hp2 HG01255.hp2 HG02074.hp2 HG02132.hp2 HG02486.hp2 HG02738.hp2 HG02896.hp2 HG03209.hp1 HG03239.hp1 HG04115.hp1 NA18998.hp1	a0001 a0001	a0001c0001 a0001c0009 a0001c0001 a0001c0009	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(1): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0009t0001	a0001c0001t0001g0030 a0001c0001t0001g0035 a0001c0001t0001g0046 others(9): Show a0001c0001t0001g0030 a0001c0001t0001g0035 a0001c0001t0001g0046 a0001c0001t0001g0062 a0001c0001t0001g0086 a0001c0001t0001g0100 a0001c0001t0001g0202 a0001c0001t0001g0250 a0001c0001t0001g0282 a0001c0001t0002g0335 a0001c0001t0003g0209 a0001c0009t0001g0068	12	354	0.0339	6	c.332 others(23): Show c.332-4362_332-4357dupGTGTGT	AGAP3	ENSG00000133612.20	transcript	ENST00000397238.7	protein_coding	1/17		INFO_REALIGN_3_PRIME	chr7	TogoVar
AGAP4_chr10_45820594_45852500	45821149	C C	CAAAAAA CAAAAAA	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00733.hp1 HG01123.hp2 HG01175.hp2 others(8): Show HG00733.hp1 HG01123.hp2 HG01175.hp2 HG01934.hp2 HG03017.hp2 HG03654.hp1 HG03654.hp2 HG03704.hp1 HG03704.hp2 HG03831.hp1 HG03834.hp1	a0002 a0011 a0002 a0011	a0002c0002 a0011c0010 a0002c0002 a0011c0010	a0002c0002t0001 a0011c0010t0001 a0002c0002t0001 a0011c0010t0001	a0002c0002t0001g0001 a0002c0002t0001g0160 a0002c0002t0001g0163 others(5): Show a0002c0002t0001g0001 a0002c0002t0001g0160 a0002c0002t0001g0163 a0002c0002t0001g0165 a0002c0002t0001g0177 a0011c0010t0001g0123 a0011c0010t0001g0144 a0011c0010t0001g0150	11	382	0.0288	6	c.47 others(17): Show c.4765_*4766insTTTTTT	AGAP4	ENSG00000188234.15	transcript	ENST00000616763.6	protein_coding		4444		chr10	TogoVar
AGAP4_chr10_45820594_45852500	45834674	C C	CAAAAAA CAAAAAA	intron_variant intron_variant	MODIFIER	HG00558.hp2 HG00597.hp1 HG01069.hp2 others(12): Show HG00558.hp2 HG00597.hp1 HG01069.hp2 HG01884.hp2 HG02040.hp1 HG02109.hp1 HG02155.hp1 HG02451.hp2 HG02486.hp2 HG02738.hp1 NA18944.hp1 NA18980.hp2 NA18989.hp1 NA19011.hp1 NA19065.hp1	a0002 a0003 a0012 a0002 a0003 a0012	a0002c0002 a0003c0013 a0012c0015 a0002c0002 a0003c0013 a0012c0015	a0002c0002t0001 a0003c0013t0001 a0012c0015t0001 a0002c0002t0001 a0003c0013t0001 a0012c0015t0001	a0002c0002t0001g0004 a0002c0002t0001g0027 a0002c0002t0001g0121 others(6): Show a0002c0002t0001g0004 a0002c0002t0001g0027 a0002c0002t0001g0121 a0002c0002t0001g0127 a0002c0002t0001g0161 a0002c0002t0001g0173 a0003c0013t0001g0021 a0003c0013t0001g0099 a0012c0015t0001g0170	15	382	0.0393	6	c.397 others(21): Show c.397-564_397-559dupTTTTTT	AGAP4	ENSG00000188234.15	transcript	ENST00000616763.6	protein_coding	4/7			chr10	TogoVar
AGAP4_chr10_45820594_45852500	45843296	C C	CAAAAAA CAAAAAA	intron_variant intron_variant	MODIFIER	HG01099.hp1 HG01243.hp1 HG01891.hp1 others(15): Show HG01099.hp1 HG01243.hp1 HG01891.hp1 HG01978.hp1 HG02559.hp2 HG02622.hp2 HG02717.hp1 HG02809.hp2 HG02886.hp1 HG02965.hp2 HG03041.hp2 HG03130.hp2 HG03195.hp2 HG03516.hp1 HG03540.hp1 HG03579.hp1 HG06807.hp1 NA21309.hp1	a0005 a0006 a0018 others(1): Show a0005 a0006 a0018 a0037	a0005c0006 a0006c0007 a0018c0024 others(1): Show a0005c0006 a0006c0007 a0018c0024 a0037c0054	a0005c0006t0001 a0006c0007t0001 a0018c0024t0001 others(1): Show a0005c0006t0001 a0006c0007t0001 a0018c0024t0001 a0037c0054t0001	a0005c0006t0001g0077 a0005c0006t0001g0083 a0006c0007t0001g0008 others(12): Show a0005c0006t0001g0077 a0005c0006t0001g0083 a0006c0007t0001g0008 a0006c0007t0001g0053 a0006c0007t0001g0054 a0006c0007t0001g0063 a0006c0007t0001g0064 a0006c0007t0001g0065 a0006c0007t0001g0068 a0006c0007t0001g0069 a0006c0007t0001g0070 a0006c0007t0001g0071 a0006c0007t0001g0072 a0018c0024t0001g0016 a0037c0054t0001g0073	18	382	0.0471	6	c.361 others(23): Show c.361+1024_361+1029dupTTTTTT	AGAP4	ENSG00000188234.15	transcript	ENST00000616763.6	protein_coding	3/7			chr10	TogoVar
AGAP4_chr10_45820594_45852500	45843954	G G	GAAGCCT GAAGCCT	intron_variant intron_variant	MODIFIER	HG01099.hp1 HG01123.hp1 HG01891.hp1 others(14): Show HG01099.hp1 HG01123.hp1 HG01891.hp1 HG01978.hp1 HG02559.hp2 HG02717.hp1 HG02809.hp2 HG02886.hp1 HG02965.hp2 HG03041.hp2 HG03130.hp2 HG03195.hp2 HG03516.hp1 HG03540.hp1 HG03579.hp1 HG06807.hp1 NA21309.hp1	a0001 a0006 a0018 others(1): Show a0001 a0006 a0018 a0037	a0001c0001 a0006c0007 a0018c0024 others(1): Show a0001c0001 a0006c0007 a0018c0024 a0037c0054	a0001c0001t0001 a0006c0007t0001 a0018c0024t0001 others(1): Show a0001c0001t0001 a0006c0007t0001 a0018c0024t0001 a0037c0054t0001	a0001c0001t0001g0277 a0006c0007t0001g0008 a0006c0007t0001g0053 others(11): Show a0001c0001t0001g0277 a0006c0007t0001g0008 a0006c0007t0001g0053 a0006c0007t0001g0054 a0006c0007t0001g0063 a0006c0007t0001g0064 a0006c0007t0001g0065 a0006c0007t0001g0068 a0006c0007t0001g0069 a0006c0007t0001g0070 a0006c0007t0001g0071 a0006c0007t0001g0072 a0018c0024t0001g0016 a0037c0054t0001g0073	17	382	0.0445	6	c.361 others(21): Show c.361+371_361+372insAGGCTT	AGAP4	ENSG00000188234.15	transcript	ENST00000616763.6	protein_coding	3/7			chr10	TogoVar
AGAP4_chr10_45820594_45852500	45849457	A A	AGATGAT AGATGAT	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02559.hp2 HG02717.hp1 HG02809.hp2 others(3): Show HG02559.hp2 HG02717.hp1 HG02809.hp2 HG03130.hp2 HG03540.hp1 NA21309.hp1	a0006 a0006	a0006c0007 a0006c0007	a0006c0007t0001 a0006c0007t0001	a0006c0007t0001g0008 a0006c0007t0001g0070 a0006c0007t0001g0071 others(1): Show a0006c0007t0001g0008 a0006c0007t0001g0070 a0006c0007t0001g0071 a0006c0007t0001g0072	6	382	0.0157	6	c.-21 others(17): Show c.-2116_-2111dupATCATC	AGAP4	ENSG00000188234.15	transcript	ENST00000616763.6	protein_coding		1958		chr10	TogoVar
AGAP4_chr10_45820594_45852500	45849470	G G	GATTATT GATTATT	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00741.hp1 HG02293.hp2 HG04115.hp2 others(1): Show HG00741.hp1 HG02293.hp2 HG04115.hp2 NA18995.hp1	a0001 a0001	a0001c0001 a0001c0003 a0001c0001 a0001c0003	a0001c0001t0001 a0001c0003t0001 a0001c0001t0001 a0001c0003t0001	a0001c0001t0001g0002 a0001c0001t0001g0052 a0001c0003t0001g0185 others(1): Show a0001c0001t0001g0002 a0001c0001t0001g0052 a0001c0003t0001g0185 a0001c0003t0001g0187	4	382	0.0105	6	c.-21 others(17): Show c.-2124_-2123insAATAAT	AGAP4	ENSG00000188234.15	transcript	ENST00000616763.6	protein_coding		1971		chr10	TogoVar
AGAP4_chr10_45820594_45852500	45849473	G G	GATTATT GATTATT	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01081.hp2 HG01256.hp2 HG02683.hp2 HG01081.hp2 HG01256.hp2 HG02683.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0218 a0001c0001t0001g0220 a0001c0001t0001g0221 a0001c0001t0001g0218 a0001c0001t0001g0220 a0001c0001t0001g0221	3	382	0.0079	6	c.-21 others(17): Show c.-2132_-2127dupAATAAT	AGAP4	ENSG00000188234.15	transcript	ENST00000616763.6	protein_coding		1974		chr10	TogoVar
AGAP6_chr10_49983406_50015499	49986579	A A	AAATAAT AAATAAT	upstream_gene_variant upstream_gene_variant	MODIFIER	HG02258.hp1 HG02976.hp2 HG03471.hp1 others(1): Show HG02258.hp1 HG02976.hp2 HG03471.hp1 HG03486.hp2	a0004 a0014 a0015 a0004 a0014 a0015	a0004c0004 a0004c0027 a0014c0033 others(1): Show a0004c0004 a0004c0027 a0014c0033 a0015c0034	a0004c0004t0004 a0004c0027t0011 a0014c0033t0004 others(1): Show a0004c0004t0004 a0004c0027t0011 a0014c0033t0004 a0015c0034t0004	a0004c0004t0004g0132 a0004c0027t0011g0195 a0014c0033t0004g0056 others(1): Show a0004c0004t0004g0132 a0004c0027t0011g0195 a0014c0033t0004g0056 a0015c0034t0004g0055	4	406	0.0099	6	c.-21 others(17): Show c.-2137_-2136insAATAAT	AGAP6	ENSG00000204149.16	transcript	ENST00000412531.7	protein_coding		1826		chr10	TogoVar
AGAP9_chr10_47496854_47528638	47525638	G G	GATTATT GATTATT	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00735.hp2 HG01361.hp2 HG02698.hp1 others(8): Show HG00735.hp2 HG01361.hp2 HG02698.hp1 HG02809.hp1 HG02896.hp2 HG03225.hp2 HG03453.hp2 HG03490.hp1 HG03492.hp2 HG04199.hp2 NA18522.hp1	a0002 a0002	a0002c0002 a0002c0027 a0002c0002 a0002c0027	a0002c0002t0002 a0002c0027t0002 a0002c0002t0002 a0002c0027t0002	a0002c0002t0002g0004 a0002c0002t0002g0169 a0002c0002t0002g0170 others(6): Show a0002c0002t0002g0004 a0002c0002t0002g0169 a0002c0002t0002g0170 a0002c0002t0002g0171 a0002c0002t0002g0172 a0002c0002t0002g0173 a0002c0002t0002g0174 a0002c0002t0002g0175 a0002c0027t0002g0168	11	206	0.0534	6	c.-21 others(17): Show c.-2113_-2112insAATAAT	AGAP9	ENSG00000204172.12	transcript	ENST00000452145.6	protein_coding		2001		chr10	TogoVar

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