Joint Open Genome and Omics Platform (JoGo)

Search by Variant

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Chr

Chromosome name (e.g., chr11).

Snpeff genename

Exact SnpEff gene name.

Sampleids

Target sampleid (e.g. HG02615).

Snpeff haplotype class

Haplotype-annotation class (e.g., ahapid, ahapid+chapid).

Snpeff annotation impact

Exact impact level (e.g., HIGH, MODERATE, LOW).

Snpeff annotation impact detail

Keyword match in SnpEff annotation.

Hapid

One or more haplotype IDs (comma-separated; e.g., a0001, a01, a0001c0001, a01c02, a1c2, a0001c0001t0005, a0001c0001t0005g0018).

Samplehapid

Sample haplotype IDs to include (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

No_hapid

Haplotype IDs to exclude (comma-separated; e.g., a0001, a0002, a0001c0001, a0001c0001t0005, a1, a01).

No_samplehapid

Sample haplotype IDs to exclude (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

Start

Start position (GRCh38).

End

End position (GRCh38).

Minac

Minimum alternate allele count (≥).

Maxac

Maximum alternate allele count (≤).

Minlen

Minimum variant length (≥).

Maxlen

Maximum variant length (≤).

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⚠️ Results limited to 10,000 hits. Refine your search for more specific results.

regionname	pos	ref	alt	annotation	impact	samples	ahapids	achapids	acthapids	actghapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	external
PBX3_chr9_125742373_125972377	125777010	C C	CTTTTTTT CTTTTTTT	intron_variant intron_variant	MODIFIER	HG00408.hp2 HG00544.hp1 HG00609.hp1 others(27): Show HG00408.hp2 HG00544.hp1 HG00609.hp1 HG01255.hp2 HG01358.hp2 HG01981.hp2 HG01993.hp2 HG02015.hp2 HG02129.hp1 HG04228.hp2 NA18939.hp1 NA18956.hp2 NA18962.hp2 NA18963.hp1 NA18965.hp1 NA18968.hp2 NA18979.hp2 NA18988.hp2 NA18989.hp1 NA18993.hp2 NA18994.hp2 NA18999.hp1 NA19003.hp2 NA19011.hp2 NA19012.hp1 NA19054.hp1 NA19057.hp2 NA19066.hp1 NA19079.hp1 NA19085.hp2	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0003 a0001c0002t0004 a0001c0002t0014 a0001c0002t0003 a0001c0002t0004 a0001c0002t0014	a0001c0002t0003g0142 a0001c0002t0004g0118 a0001c0002t0004g0135 others(27): Show a0001c0002t0003g0142 a0001c0002t0004g0118 a0001c0002t0004g0135 a0001c0002t0004g0136 a0001c0002t0004g0137 a0001c0002t0004g0138 a0001c0002t0004g0139 a0001c0002t0004g0140 a0001c0002t0004g0141 a0001c0002t0004g0143 a0001c0002t0004g0144 a0001c0002t0004g0145 a0001c0002t0004g0146 a0001c0002t0004g0147 a0001c0002t0004g0148 a0001c0002t0004g0149 a0001c0002t0004g0150 a0001c0002t0004g0152 a0001c0002t0004g0153 a0001c0002t0004g0154 a0001c0002t0004g0155 a0001c0002t0004g0157 a0001c0002t0004g0158 a0001c0002t0004g0159 a0001c0002t0004g0160 a0001c0002t0004g0162 a0001c0002t0004g0164 a0001c0002t0004g0165 a0001c0002t0004g0166 a0001c0002t0014g0151	30	294	0.1020	7	c.274 others(26): Show c.274+28391_274+28392insTTTTTTT	PBX3	ENSG00000167081.18	transcript	ENST00000373489.10	protein_coding	2/8		INFO_REALIGN_3_PRIME	chr9	TogoVar
PBX3_chr9_125742373_125972377	125781579	G G	GGAGAGGC GGAGAGGC	intron_variant intron_variant	MODIFIER	HG02895.hp2 HG02897.hp1 HG03225.hp2 others(2): Show HG02895.hp2 HG02897.hp1 HG03225.hp2 NA19030.hp1 NA20129.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0174 a0001c0001t0001g0181 a0001c0001t0001g0182 others(2): Show a0001c0001t0001g0174 a0001c0001t0001g0181 a0001c0001t0001g0182 a0001c0001t0001g0183 a0001c0001t0001g0195	5	294	0.0170	7	c.274 others(26): Show c.274+32970_274+32976dupCGAGAGG	PBX3	ENSG00000167081.18	transcript	ENST00000373489.10	protein_coding	2/8		INFO_REALIGN_3_PRIME	chr9	TogoVar
PBX3_chr9_125742373_125972377	125793366	A A	ATATATAT ATATATAT	intron_variant intron_variant	MODIFIER	HG01069.hp1 HG01071.hp2 HG02080.hp2 others(4): Show HG01069.hp1 HG01071.hp2 HG02080.hp2 HG02602.hp1 NA18988.hp1 NA19011.hp1 NA19060.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0003 a0001c0001t0002 a0001c0001t0003	a0001c0001t0002g0023 a0001c0001t0002g0041 a0001c0001t0002g0057 others(4): Show a0001c0001t0002g0023 a0001c0001t0002g0041 a0001c0001t0002g0057 a0001c0001t0002g0084 a0001c0001t0003g0055 a0001c0001t0003g0061 a0001c0001t0003g0063	7	294	0.0238	7	c.274 others(26): Show c.274+44743_274+44744insTATATAT	PBX3	ENSG00000167081.18	transcript	ENST00000373489.10	protein_coding	2/8			chr9	TogoVar
PBX3_chr9_125742373_125972377	125971711	G G	GTTTTTTT GTTTTTTT	downstream_gene_variant downstream_gene_variant	MODIFIER	HG00099.hp2 HG00280.hp1 HG00438.hp1 others(15): Show HG00099.hp2 HG00280.hp1 HG00438.hp1 HG00639.hp1 HG00642.hp2 HG00738.hp1 HG01891.hp1 HG01993.hp1 HG02083.hp1 HG02486.hp1 HG02602.hp1 HG02717.hp1 HG03710.hp1 HG04199.hp2 HG04228.hp1 NA18965.hp2 NA18967.hp1 NA19012.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0003 a0001c0001t0007 others(1): Show a0001c0001t0002 a0001c0001t0003 a0001c0001t0007 a0001c0001t0008	a0001c0001t0002g0082 a0001c0001t0002g0093 a0001c0001t0003g0002 others(15): Show a0001c0001t0002g0082 a0001c0001t0002g0093 a0001c0001t0003g0002 a0001c0001t0003g0026 a0001c0001t0003g0061 a0001c0001t0003g0091 a0001c0001t0003g0101 a0001c0001t0003g0102 a0001c0001t0003g0103 a0001c0001t0003g0107 a0001c0001t0003g0117 a0001c0001t0003g0121 a0001c0001t0003g0126 a0001c0001t0003g0129 a0001c0001t0003g0171 a0001c0001t0003g0173 a0001c0001t0007g0098 a0001c0001t0008g0043	18	294	0.0612	7	c.57 others(18): Show c.5788_*5789insTTTTTTT	PBX3	ENSG00000167081.18	transcript	ENST00000373489.10	protein_coding		4335		chr9	TogoVar
PCBP3_chr21_45638725_45947450	45784420	C C	CCCTACCT CCCTACCT	intron_variant intron_variant	MODIFIER	HG02015.hp2 HG03927.hp1 HG03942.hp2 HG02015.hp2 HG03927.hp1 HG03942.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0001 a0001c0001t0002	a0001c0001t0001g0141 a0001c0001t0001g0181 a0001c0001t0002g0066 a0001c0001t0001g0141 a0001c0001t0001g0181 a0001c0001t0002g0066	3	292	0.0103	7	c.-12 others(28): Show c.-126+29019_-126+29025dupCTACCTC	PCBP3	ENSG00000183570.17	transcript	ENST00000681687.1	protein_coding	4/17		INFO_REALIGN_3_PRIME	chr21	TogoVar
PCBP3_chr21_45638725_45947450	45814641	A A	AGTGAGTG AGTGAGTG	intron_variant intron_variant	MODIFIER	HG01891.hp2 HG02965.hp2 HG03453.hp2 others(2): Show HG01891.hp2 HG02965.hp2 HG03453.hp2 NA19030.hp2 NA19240.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0022 a0001c0001t0002 a0001c0001t0022	a0001c0001t0002g0209 a0001c0001t0002g0217 a0001c0001t0002g0218 others(2): Show a0001c0001t0002g0209 a0001c0001t0002g0217 a0001c0001t0002g0218 a0001c0001t0002g0220 a0001c0001t0022g0216	5	292	0.0171	7	c.-12 others(28): Show c.-125-35312_-125-35306dupGTGAGTG	PCBP3	ENSG00000183570.17	transcript	ENST00000681687.1	protein_coding	4/17		INFO_REALIGN_3_PRIME	chr21	TogoVar
PCBP3_chr21_45638725_45947450	45814988	A A	AGTGAGTG AGTGAGTG	intron_variant intron_variant	MODIFIER	HG00323.hp2 HG00438.hp1 HG00558.hp1 others(65): Show HG00323.hp2 HG00438.hp1 HG00558.hp1 HG00639.hp2 HG00673.hp1 HG01069.hp1 HG01070.hp2 HG01081.hp2 HG01175.hp1 HG01255.hp2 HG01257.hp1 HG01258.hp2 HG01361.hp1 HG01516.hp2 HG01891.hp1 HG01891.hp2 HG01975.hp1 HG01981.hp2 HG02015.hp1 HG02040.hp2 HG02055.hp2 HG02257.hp2 HG02523.hp2 HG02559.hp1 HG02559.hp2 HG02572.hp1 HG02647.hp2 HG02683.hp1 HG02698.hp1 HG02717.hp2 HG02922.hp2 HG02965.hp2 HG02970.hp1 HG03017.hp1 HG03098.hp1 HG03239.hp2 HG03453.hp2 HG03490.hp2 HG03492.hp1 HG03540.hp1 HG03669.hp1 HG03669.hp2 HG03688.hp2 HG04115.hp2 HG04184.hp2 HG04204.hp2 NA18941.hp2 NA18946.hp2 NA18955.hp2 NA18959.hp1 NA18962.hp1 NA18969.hp1 NA18983.hp2 NA19002.hp1 NA19007.hp2 NA19009.hp2 NA19012.hp2 NA19030.hp2 NA19056.hp1 NA19065.hp2 NA19066.hp2 NA19068.hp2 NA19087.hp2 NA19091.hp1 NA19240.hp1 NA20129.hp2 NA20905.hp1 homoSapiens_chm13v2.hp1	a0001 a0001	a0001c0001 a0001c0003 a0001c0001 a0001c0003	a0001c0001t0002 a0001c0001t0003 a0001c0001t0005 others(6): Show a0001c0001t0002 a0001c0001t0003 a0001c0001t0005 a0001c0001t0007 a0001c0001t0018 a0001c0001t0019 a0001c0001t0022 a0001c0001t0024 a0001c0003t0014	a0001c0001t0002g0209 a0001c0001t0002g0217 a0001c0001t0002g0218 others(65): Show a0001c0001t0002g0209 a0001c0001t0002g0217 a0001c0001t0002g0218 a0001c0001t0002g0220 a0001c0001t0002g0223 a0001c0001t0002g0225 a0001c0001t0002g0226 a0001c0001t0002g0227 a0001c0001t0002g0228 a0001c0001t0002g0229 a0001c0001t0002g0233 a0001c0001t0002g0235 a0001c0001t0002g0237 a0001c0001t0002g0239 a0001c0001t0002g0240 a0001c0001t0002g0241 a0001c0001t0002g0242 a0001c0001t0002g0245 a0001c0001t0002g0246 a0001c0001t0002g0247 a0001c0001t0002g0248 a0001c0001t0002g0249 a0001c0001t0002g0250 a0001c0001t0002g0251 a0001c0001t0002g0252 a0001c0001t0002g0253 a0001c0001t0002g0254 a0001c0001t0002g0255 a0001c0001t0002g0256 a0001c0001t0002g0257 a0001c0001t0002g0259 a0001c0001t0002g0262 a0001c0001t0002g0264 a0001c0001t0002g0265 a0001c0001t0002g0267 a0001c0001t0002g0268 a0001c0001t0002g0269 a0001c0001t0002g0270 a0001c0001t0002g0271 a0001c0001t0002g0272 a0001c0001t0002g0274 a0001c0001t0002g0275 a0001c0001t0002g0276 a0001c0001t0002g0277 a0001c0001t0002g0278 a0001c0001t0002g0283 a0001c0001t0002g0284 a0001c0001t0002g0287 a0001c0001t0003g0219 a0001c0001t0003g0263 a0001c0001t0005g0260 a0001c0001t0005g0261 a0001c0001t0005g0273 a0001c0001t0005g0279 a0001c0001t0005g0280 a0001c0001t0005g0286 a0001c0001t0005g0292 a0001c0001t0007g0234 a0001c0001t0007g0238 a0001c0001t0007g0243 a0001c0001t0007g0244 a0001c0001t0007g0258 a0001c0001t0018g0266 a0001c0001t0019g0224 a0001c0001t0022g0216 a0001c0001t0024g0236 a0001c0003t0014g0290 a0001c0003t0014g0291	68	292	0.2329	7	c.-12 others(28): Show c.-125-34965_-125-34959dupGTGAGTG	PCBP3	ENSG00000183570.17	transcript	ENST00000681687.1	protein_coding	4/17		INFO_REALIGN_3_PRIME	chr21	TogoVar
PCCA_chr13_100084093_100535435	100422070	T T	TTTCTTTC TTTCTTTC	intron_variant intron_variant	MODIFIER	HG00408.hp1 HG00639.hp1 HG00738.hp1 others(21): Show HG00408.hp1 HG00639.hp1 HG00738.hp1 HG01074.hp1 HG01255.hp1 HG01361.hp1 HG01517.hp1 HG02132.hp1 HG02615.hp1 HG02886.hp2 HG02896.hp2 HG02897.hp1 HG02897.hp2 HG03453.hp1 HG03490.hp1 HG03490.hp2 HG03654.hp1 HG03688.hp1 HG04204.hp2 NA18956.hp2 NA18968.hp2 NA18969.hp2 NA19064.hp1 NA20805.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0001c0002 a0002c0003 a0001c0001 a0001c0002 a0002c0003	a0001c0001t0001 a0001c0001t0004 a0001c0002t0001 others(1): Show a0001c0001t0001 a0001c0001t0004 a0001c0002t0001 a0002c0003t0001	a0001c0001t0001g0001 a0001c0001t0001g0002 a0001c0001t0001g0007 others(21): Show a0001c0001t0001g0001 a0001c0001t0001g0002 a0001c0001t0001g0007 a0001c0001t0001g0008 a0001c0001t0001g0013 a0001c0001t0001g0020 a0001c0001t0001g0033 a0001c0001t0001g0037 a0001c0001t0001g0042 a0001c0001t0001g0045 a0001c0001t0001g0049 a0001c0001t0001g0065 a0001c0001t0001g0081 a0001c0001t0001g0089 a0001c0001t0001g0097 a0001c0001t0001g0099 a0001c0001t0001g0119 a0001c0001t0001g0136 a0001c0001t0001g0149 a0001c0001t0004g0121 a0001c0002t0001g0093 a0001c0002t0001g0094 a0001c0002t0001g0106 a0002c0003t0001g0064	24	174	0.1379	7	c.174 others(26): Show c.1747-3561_1747-3560insCTTTCTT	PCCA	ENSG00000175198.17	transcript	ENST00000376285.6	protein_coding	19/23		INFO_REALIGN_3_PRIME	chr13	TogoVar
PCCA_chr13_100084093_100535435	100516760	T T	TGTGTGTG TGTGTGTG	intron_variant intron_variant	MODIFIER	HG01074.hp2 HG02258.hp2 HG02723.hp1 others(4): Show HG01074.hp2 HG02258.hp2 HG02723.hp1 HG02965.hp1 HG03453.hp1 HG03516.hp2 NA19240.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0056 a0001c0001t0001g0088 a0001c0001t0001g0115 others(4): Show a0001c0001t0001g0056 a0001c0001t0001g0088 a0001c0001t0001g0115 a0001c0001t0001g0123 a0001c0001t0001g0133 a0001c0001t0001g0148 a0001c0001t0001g0149	7	174	0.0402	7	c.204 others(26): Show c.2040+1193_2040+1194insGTGTGTG	PCCA	ENSG00000175198.17	transcript	ENST00000376285.6	protein_coding	22/23			chr13	TogoVar
PCDH11X_chrX_91774375_92628230	91917569	C C	CAAAAAAA CAAAAAAA	intron_variant intron_variant	MODIFIER	NA18943.hp1 NA18986.hp1 NA19091.hp1 NA18943.hp1 NA18986.hp1 NA19091.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0001 a0001c0001t0002	a0001c0001t0001g0029 a0001c0001t0001g0099 a0001c0001t0002g0078 a0001c0001t0001g0029 a0001c0001t0001g0099 a0001c0001t0002g0078	3	154	0.0195	7	c.303 others(28): Show c.3033+38317_3033+38323dupAAAAAAA	PCDH11X	ENSG00000102290.23	transcript	ENST00000682573.1	protein_coding	6/10		INFO_REALIGN_3_PRIME	chrX	TogoVar
PCDH11X_chrX_91774375_92628230	92111219	T T	TAAAAAAA TAAAAAAA	intron_variant intron_variant	MODIFIER	HG01081.hp1 HG01109.hp1 HG02630.hp1 others(1): Show HG01081.hp1 HG01109.hp1 HG02630.hp1 HG03453.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0003 a0001c0001 a0001c0002 a0001c0003	a0001c0001t0005 a0001c0001t0020 a0001c0002t0002 others(1): Show a0001c0001t0005 a0001c0001t0020 a0001c0002t0002 a0001c0003t0012	a0001c0001t0005g0050 a0001c0001t0020g0149 a0001c0002t0002g0011 others(1): Show a0001c0001t0005g0050 a0001c0001t0020g0149 a0001c0002t0002g0011 a0001c0003t0012g0144	4	154	0.0260	7	c.303 others(28): Show c.3034-90130_3034-90124dupAAAAAAA	PCDH11X	ENSG00000102290.23	transcript	ENST00000682573.1	protein_coding	6/10		INFO_REALIGN_3_PRIME	chrX	TogoVar
PCDH11X_chrX_91774375_92628230	92148097	T T	TTTCCTTC TTTCCTTC	intron_variant intron_variant	MODIFIER	HG04204.hp1 HG04204.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0152 a0001c0001t0001g0152	1	154	0.0065	7	c.303 others(28): Show c.3034-53278_3034-53277insTTCCTTC	PCDH11X	ENSG00000102290.23	transcript	ENST00000682573.1	protein_coding	6/10			chrX	TogoVar
PCDH11X_chrX_91774375_92628230	92148101	T T	TTTCCTTC TTTCCTTC	intron_variant intron_variant	MODIFIER	HG00642.hp1 HG01099.hp1 NA19079.hp1 HG00642.hp1 HG01099.hp1 NA19079.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0071 a0001c0001t0001g0107 a0001c0001t0001g0153 a0001c0001t0001g0071 a0001c0001t0001g0107 a0001c0001t0001g0153	3	154	0.0195	7	c.303 others(28): Show c.3034-53274_3034-53273insTTCCTTC	PCDH11X	ENSG00000102290.23	transcript	ENST00000682573.1	protein_coding	6/10			chrX	TogoVar
PCDH11X_chrX_91774375_92628230	92148105	T T	TTTCCTTC TTTCCTTC	intron_variant intron_variant	MODIFIER	HG03098.hp1 NA18747.hp1 NA18945.hp1 HG03098.hp1 NA18747.hp1 NA18945.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0003 a0001c0001t0010 a0001c0001t0001 a0001c0001t0003 a0001c0001t0010	a0001c0001t0001g0120 a0001c0001t0003g0096 a0001c0001t0010g0150 a0001c0001t0001g0120 a0001c0001t0003g0096 a0001c0001t0010g0150	3	154	0.0195	7	c.303 others(28): Show c.3034-53270_3034-53269insTTCCTTC	PCDH11X	ENSG00000102290.23	transcript	ENST00000682573.1	protein_coding	6/10			chrX	TogoVar
PCDH11X_chrX_91774375_92628230	92148109	T T	TTTCCTTC TTTCCTTC	intron_variant intron_variant	MODIFIER	NA18970.hp1 NA18970.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0003 a0001c0001t0003	a0001c0001t0003g0100 a0001c0001t0003g0100	1	154	0.0065	7	c.303 others(28): Show c.3034-53266_3034-53265insTTCCTTC	PCDH11X	ENSG00000102290.23	transcript	ENST00000682573.1	protein_coding	6/10			chrX	TogoVar
PCDH11X_chrX_91774375_92628230	92403329	G G	GTTTTTTT GTTTTTTT	intron_variant intron_variant	MODIFIER	HG00609.hp1 HG02055.hp1 HG02451.hp2 others(2): Show HG00609.hp1 HG02055.hp1 HG02451.hp2 NA19000.hp1 NA19012.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0002c0006 a0001c0001 a0002c0006	a0001c0001t0001 a0001c0001t0002 a0001c0001t0013 others(2): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0013 a0001c0001t0029 a0002c0006t0009	a0001c0001t0001g0047 a0001c0001t0002g0067 a0001c0001t0013g0089 others(2): Show a0001c0001t0001g0047 a0001c0001t0002g0067 a0001c0001t0013g0089 a0001c0001t0029g0024 a0002c0006t0009g0032	5	154	0.0325	7	c.334 others(28): Show c.3343+15399_3343+15405dupTTTTTTT	PCDH11X	ENSG00000102290.23	transcript	ENST00000682573.1	protein_coding	9/10		INFO_REALIGN_3_PRIME	chrX	TogoVar
PCDH11X_chrX_91774375_92628230	92452500	T T	TATATATG TATATATG	intron_variant intron_variant	MODIFIER	HG00673.hp1 NA18995.hp1 NA19079.hp1 HG00673.hp1 NA18995.hp1 NA19079.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0031 a0001c0001t0001g0071 a0001c0001t0001g0125 a0001c0001t0001g0031 a0001c0001t0001g0071 a0001c0001t0001g0125	3	154	0.0195	7	c.334 others(28): Show c.3344-15799_3344-15798insATATATG	PCDH11X	ENSG00000102290.23	transcript	ENST00000682573.1	protein_coding	9/10			chrX	TogoVar
PCDH11X_chrX_91774375_92628230	92487048	C C	CTTTTTTT CTTTTTTT	intron_variant intron_variant	MODIFIER	HG02818.hp2 HG03579.hp1 HG02818.hp2 HG03579.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0008 a0001c0001t0011 a0001c0001t0008 a0001c0001t0011	a0001c0001t0008g0148 a0001c0001t0011g0010 a0001c0001t0008g0148 a0001c0001t0011g0010	2	154	0.0130	7	c.336 others(28): Show c.3367+18742_3367+18748dupTTTTTTT	PCDH11X	ENSG00000102290.23	transcript	ENST00000682573.1	protein_coding	10/10		INFO_REALIGN_3_PRIME	chrX	TogoVar
PCDH11X_chrX_91774375_92628230	92606232	C C	CAAAAAAA CAAAAAAA	intron_variant intron_variant	MODIFIER	HG02572.hp1 HG02818.hp2 HG02572.hp1 HG02818.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0006 a0001c0001t0011 a0001c0001t0006 a0001c0001t0011	a0001c0001t0006g0003 a0001c0001t0011g0010 a0001c0001t0006g0003 a0001c0001t0011g0010	2	154	0.0130	7	c.336 others(28): Show c.3368-12013_3368-12007dupAAAAAAA	PCDH11X	ENSG00000102290.23	transcript	ENST00000682573.1	protein_coding	10/10		INFO_REALIGN_3_PRIME	chrX	TogoVar
PCDH11Y_chrY_4995296_5747224	5393657	C C	CAAAAAAA CAAAAAAA	intron_variant intron_variant	MODIFIER	HG03017.hp1 NA19043.hp1 HG03017.hp1 NA19043.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0002c0002 a0001c0001 a0002c0002	a0001c0001t0001 a0002c0002t0001 a0001c0001t0001 a0002c0002t0001	a0001c0001t0001g0098 a0002c0002t0001g0047 a0001c0001t0001g0098 a0002c0002t0001g0047	2	115	0.0174	7	c.285 others(30): Show c.2854-107358_2854-107352dupAAAAAAA	PCDH11Y	ENSG00000099715.15	transcript	ENST00000698851.1	protein_coding	3/5		INFO_REALIGN_3_PRIME	chrY	TogoVar
PCDH11Y_chrY_4995296_5747224	5541687	T T	TTTCTTTC TTTCTTTC	intron_variant intron_variant	MODIFIER	NA19009.hp1 NA19009.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0005 a0001c0001t0005	a0001c0001t0005g0055 a0001c0001t0005g0055	1	115	0.0087	7	c.305 others(28): Show c.3053-40086_3053-40085insCTTTCTT	PCDH11Y	ENSG00000099715.15	transcript	ENST00000698851.1	protein_coding	4/5		INFO_REALIGN_3_PRIME	chrY	TogoVar
PCDH11Y_chrY_4995296_5747224	5682239	G G	GTTTTTTT GTTTTTTT	intron_variant intron_variant	MODIFIER	HG01069.hp1 HG01943.hp1 HG01069.hp1 HG01943.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0002c0002 a0001c0001 a0002c0002	a0001c0001t0001 a0002c0002t0002 a0001c0001t0001 a0002c0002t0002	a0001c0001t0001g0083 a0002c0002t0002g0045 a0001c0001t0001g0083 a0002c0002t0002g0045	2	115	0.0174	7	c.307 others(28): Show c.3077-55000_3077-54994dupTTTTTTT	PCDH11Y	ENSG00000099715.15	transcript	ENST00000698851.1	protein_coding	5/5		INFO_REALIGN_3_PRIME	chrY	TogoVar
PCDH15_chr10_53797771_54806231	53888702	T T	TATATATA TATATATA	intron_variant intron_variant	MODIFIER	HG02602.hp1 HG02965.hp1 HG03942.hp2 others(2): Show HG02602.hp1 HG02965.hp1 HG03942.hp2 NA18906.hp2 NA20905.hp2	a0003 a0004 a0005 others(1): Show a0003 a0004 a0005 a0006	a0003c0003 a0004c0004 a0005c0005 others(1): Show a0003c0003 a0004c0004 a0005c0005 a0006c0006	a0003c0003t0001 a0003c0003t0002 a0004c0004t0005 others(2): Show a0003c0003t0001 a0003c0003t0002 a0004c0004t0005 a0005c0005t0002 a0006c0006t0005	a0003c0003t0001g0009 a0003c0003t0002g0020 a0004c0004t0005g0057 others(2): Show a0003c0003t0001g0009 a0003c0003t0002g0020 a0004c0004t0005g0057 a0005c0005t0002g0094 a0006c0006t0005g0055	5	102	0.0490	7	c.350 others(28): Show c.3501+14540_3501+14541insTATATAT	PCDH15	ENSG00000150275.20	transcript	ENST00000644397.2	protein_coding	26/37			chr10	TogoVar
PCDH15_chr10_53797771_54806231	53957503	G G	GTTTTTTT GTTTTTTT	intron_variant intron_variant	MODIFIER	HG01884.hp1 HG02258.hp2 HG03098.hp2 others(3): Show HG01884.hp1 HG02258.hp2 HG03098.hp2 HG03669.hp2 NA18906.hp2 NA19240.hp1	a0001 a0003 a0004 others(1): Show a0001 a0003 a0004 a0016	a0001c0001 a0003c0003 a0004c0004 others(1): Show a0001c0001 a0003c0003 a0004c0004 a0016c0012	a0001c0001t0001 a0001c0001t0004 a0003c0003t0001 others(2): Show a0001c0001t0001 a0001c0001t0004 a0003c0003t0001 a0004c0004t0001 a0016c0012t0001	a0001c0001t0001g0006 a0001c0001t0001g0014 a0001c0001t0004g0031 others(3): Show a0001c0001t0001g0006 a0001c0001t0001g0014 a0001c0001t0004g0031 a0003c0003t0001g0009 a0004c0004t0001g0045 a0016c0012t0001g0008	6	102	0.0588	7	c.312 others(26): Show c.3122+2222_3122+2228dupAAAAAAA	PCDH15	ENSG00000150275.20	transcript	ENST00000644397.2	protein_coding	23/37			chr10	TogoVar
PCDH15_chr10_53797771_54806231	53961130	A A	ATACCACT ATACCACT	intron_variant intron_variant	MODIFIER	HG01167.hp1 HG03041.hp2 HG03209.hp2 HG01167.hp1 HG03041.hp2 HG03209.hp2	a0001 a0017 a0026 a0001 a0017 a0026	a0001c0001 a0017c0011 a0026c0033 a0001c0001 a0017c0011 a0026c0033	a0001c0001t0003 a0017c0011t0012 a0026c0033t0017 a0001c0001t0003 a0017c0011t0012 a0026c0033t0017	a0001c0001t0003g0098 a0017c0011t0012g0086 a0026c0033t0017g0023 a0001c0001t0003g0098 a0017c0011t0012g0086 a0026c0033t0017g0023	3	102	0.0294	7	c.300 others(24): Show c.3009+621_3009+622insAGTGGTA	PCDH15	ENSG00000150275.20	transcript	ENST00000644397.2	protein_coding	22/37			chr10	TogoVar
PCDH15_chr10_53797771_54806231	54004426	C C	CACACACA CACACACA	intron_variant intron_variant	MODIFIER	HG00735.hp1 HG00735.hp2 HG01069.hp2 others(17): Show HG00735.hp1 HG00735.hp2 HG01069.hp2 HG01175.hp1 HG02145.hp1 HG02280.hp1 HG02602.hp1 HG02965.hp1 HG02965.hp2 HG03041.hp1 HG03471.hp2 HG03486.hp2 HG03492.hp1 HG03492.hp2 HG03540.hp1 HG03942.hp2 NA18906.hp2 NA18945.hp2 NA19043.hp1 NA19240.hp1	a0001 a0003 a0004 others(5): Show a0001 a0003 a0004 a0005 a0006 a0011 a0016 a0029	a0001c0001 a0003c0003 a0004c0004 others(5): Show a0001c0001 a0003c0003 a0004c0004 a0005c0005 a0006c0006 a0011c0017 a0016c0012 a0029c0035	a0001c0001t0014 a0003c0003t0001 a0003c0003t0002 others(14): Show a0001c0001t0014 a0003c0003t0001 a0003c0003t0002 a0003c0003t0003 a0003c0003t0004 a0003c0003t0009 a0003c0003t0019 a0004c0004t0005 a0004c0004t0025 a0005c0005t0002 a0005c0005t0004 a0005c0005t0009 a0006c0006t0002 a0006c0006t0006 a0011c0017t0002 a0016c0012t0001 a0029c0035t0005	a0001c0001t0014g0074 a0003c0003t0001g0009 a0003c0003t0001g0017 others(17): Show a0001c0001t0014g0074 a0003c0003t0001g0009 a0003c0003t0001g0017 a0003c0003t0002g0020 a0003c0003t0003g0033 a0003c0003t0003g0056 a0003c0003t0003g0092 a0003c0003t0004g0088 a0003c0003t0009g0018 a0003c0003t0019g0060 a0004c0004t0005g0057 a0004c0004t0025g0032 a0005c0005t0002g0094 a0005c0005t0004g0076 a0005c0005t0009g0085 a0006c0006t0002g0050 a0006c0006t0006g0046 a0011c0017t0002g0072 a0016c0012t0001g0008 a0029c0035t0005g0100	20	102	0.1961	7	c.275 others(26): Show c.2752-8662_2752-8661insTGTGTGT	PCDH15	ENSG00000150275.20	transcript	ENST00000644397.2	protein_coding	20/37			chr10	TogoVar
PCDH15_chr10_53797771_54806231	54099513	A A	AAATATAT AAATATAT	intron_variant intron_variant	MODIFIER	HG02258.hp2 HG03041.hp1 HG03098.hp2 others(1): Show HG02258.hp2 HG03041.hp1 HG03098.hp2 NA20129.hp1	a0001 a0005 a0012 a0001 a0005 a0012	a0001c0001 a0005c0005 a0012c0016 a0001c0001 a0005c0005 a0012c0016	a0001c0001t0001 a0001c0001t0004 a0005c0005t0009 others(1): Show a0001c0001t0001 a0001c0001t0004 a0005c0005t0009 a0012c0016t0001	a0001c0001t0001g0006 a0001c0001t0004g0031 a0005c0005t0009g0085 others(1): Show a0001c0001t0001g0006 a0001c0001t0004g0031 a0005c0005t0009g0085 a0012c0016t0001g0028	4	102	0.0392	7	c.191 others(26): Show c.1918-9451_1918-9450insATATATT	PCDH15	ENSG00000150275.20	transcript	ENST00000644397.2	protein_coding	15/37			chr10	TogoVar
PCDH15_chr10_53797771_54806231	54182022	A A	ATCTTGGT ATCTTGGT	intron_variant intron_variant	MODIFIER	HG01069.hp2 HG02145.hp2 HG02258.hp1 others(10): Show HG01069.hp2 HG02145.hp2 HG02258.hp1 HG02886.hp2 HG02922.hp1 HG03041.hp2 HG03098.hp1 HG03209.hp1 HG03209.hp2 HG03486.hp1 HG03540.hp2 HG03579.hp2 HG06807.hp2	a0001 a0002 a0006 others(7): Show a0001 a0002 a0006 a0017 a0022 a0027 a0029 a0030 a0035 a0036	a0001c0001 a0002c0002 a0006c0006 others(7): Show a0001c0001 a0002c0002 a0006c0006 a0017c0011 a0022c0028 a0027c0031 a0029c0035 a0030c0036 a0035c0025 a0036c0019	a0001c0001t0001 a0001c0001t0003 a0002c0002t0004 others(9): Show a0001c0001t0001 a0001c0001t0003 a0002c0002t0004 a0002c0002t0009 a0006c0006t0010 a0017c0011t0012 a0022c0028t0004 a0027c0031t0010 a0029c0035t0005 a0030c0036t0004 a0035c0025t0007 a0036c0019t0015	a0001c0001t0001g0101 a0001c0001t0003g0087 a0001c0001t0003g0098 others(10): Show a0001c0001t0001g0101 a0001c0001t0003g0087 a0001c0001t0003g0098 a0002c0002t0004g0077 a0002c0002t0009g0027 a0006c0006t0010g0030 a0017c0011t0012g0086 a0022c0028t0004g0013 a0027c0031t0010g0066 a0029c0035t0005g0100 a0030c0036t0004g0061 a0035c0025t0007g0079 a0036c0019t0015g0001	13	102	0.1275	7	c.159 others(26): Show c.1590+1415_1590+1421dupACCAAGA	PCDH15	ENSG00000150275.20	transcript	ENST00000644397.2	protein_coding	13/37			chr10	TogoVar
PCDH15_chr10_53797771_54806231	54198495	C C	CTTTTTTT CTTTTTTT	intron_variant intron_variant	MODIFIER	HG00642.hp2 HG00738.hp1 HG00738.hp2 others(7): Show HG00642.hp2 HG00738.hp1 HG00738.hp2 HG01081.hp1 HG01192.hp1 HG01884.hp1 HG01981.hp2 HG02615.hp2 HG03098.hp2 NA19043.hp1	a0001 a0008 a0014 a0001 a0008 a0014	a0001c0001 a0008c0010 a0008c0032 others(1): Show a0001c0001 a0008c0010 a0008c0032 a0014c0014	a0001c0001t0001 a0001c0001t0002 a0001c0001t0008 others(4): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0008 a0001c0001t0014 a0008c0010t0001 a0008c0032t0001 a0014c0014t0001	a0001c0001t0001g0006 a0001c0001t0001g0014 a0001c0001t0001g0039 others(7): Show a0001c0001t0001g0006 a0001c0001t0001g0014 a0001c0001t0001g0039 a0001c0001t0001g0044 a0001c0001t0002g0070 a0001c0001t0008g0003 a0001c0001t0014g0074 a0008c0010t0001g0091 a0008c0032t0001g0021 a0014c0014t0001g0012	10	102	0.0980	7	c.109 others(26): Show c.1099-2613_1099-2607dupAAAAAAA	PCDH15	ENSG00000150275.20	transcript	ENST00000644397.2	protein_coding	10/37			chr10	TogoVar
PCDH15_chr10_53797771_54806231	54232924	C C	CTTTTTTT CTTTTTTT	intron_variant intron_variant	MODIFIER	HG01069.hp2 HG01243.hp2 HG02258.hp1 others(3): Show HG01069.hp2 HG01243.hp2 HG02258.hp1 HG02622.hp2 HG02886.hp1 HG03209.hp2	a0001 a0015 a0017 others(3): Show a0001 a0015 a0017 a0028 a0029 a0036	a0001c0001 a0015c0013 a0017c0011 others(3): Show a0001c0001 a0015c0013 a0017c0011 a0028c0034 a0029c0035 a0036c0019	a0001c0001t0001 a0015c0013t0003 a0017c0011t0012 others(3): Show a0001c0001t0001 a0015c0013t0003 a0017c0011t0012 a0028c0034t0013 a0029c0035t0005 a0036c0019t0015	a0001c0001t0001g0090 a0015c0013t0003g0035 a0017c0011t0012g0086 others(3): Show a0001c0001t0001g0090 a0015c0013t0003g0035 a0017c0011t0012g0086 a0028c0034t0013g0058 a0029c0035t0005g0100 a0036c0019t0015g0001	6	102	0.0588	7	c.985 others(24): Show c.985+3892_985+3898dupAAAAAAA	PCDH15	ENSG00000150275.20	transcript	ENST00000644397.2	protein_coding	9/37			chr10	TogoVar
PCDH15_chr10_53797771_54806231	54375896	T T	TATATATA TATATATA	intron_variant intron_variant	MODIFIER	HG01192.hp1 HG02602.hp1 HG03492.hp2 others(1): Show HG01192.hp1 HG02602.hp1 HG03492.hp2 NA19043.hp1	a0001 a0005 a0008 others(1): Show a0001 a0005 a0008 a0011	a0001c0001 a0005c0005 a0008c0010 others(1): Show a0001c0001 a0005c0005 a0008c0010 a0011c0017	a0001c0001t0014 a0005c0005t0002 a0008c0010t0001 others(1): Show a0001c0001t0014 a0005c0005t0002 a0008c0010t0001 a0011c0017t0002	a0001c0001t0014g0074 a0005c0005t0002g0094 a0008c0010t0001g0091 others(1): Show a0001c0001t0014g0074 a0005c0005t0002g0094 a0008c0010t0001g0091 a0011c0017t0002g0072	4	102	0.0392	7	c.318 others(24): Show c.318+2885_318+2886insTATATAT	PCDH15	ENSG00000150275.20	transcript	ENST00000644397.2	protein_coding	4/37			chr10	TogoVar
PCDH15_chr10_53797771_54806231	54436031	G G	GGAGAGGA GGAGAGGA	intron_variant intron_variant	MODIFIER	HG06807.hp1 NA20129.hp2 HG06807.hp1 NA20129.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0002 a0002c0002t0007 a0002c0002t0002 a0002c0002t0007	a0002c0002t0002g0037 a0002c0002t0007g0038 a0002c0002t0002g0037 a0002c0002t0007g0038	2	102	0.0196	7	c.158 others(26): Show c.158-57090_158-57089insTCCTCTC	PCDH15	ENSG00000150275.20	transcript	ENST00000644397.2	protein_coding	3/37			chr10	TogoVar
PCDH15_chr10_53797771_54806231	54559850	T T	TAAAAAAA TAAAAAAA	intron_variant intron_variant	MODIFIER	HG01175.hp1 HG01981.hp2 HG02486.hp2 others(2): Show HG01175.hp1 HG01981.hp2 HG02486.hp2 HG02615.hp1 HG03579.hp1	a0001 a0002 a0003 others(2): Show a0001 a0002 a0003 a0018 a0024	a0001c0001 a0002c0002 a0003c0003 others(2): Show a0001c0001 a0002c0002 a0003c0003 a0018c0037 a0024c0029	a0001c0001t0001 a0002c0002t0005 a0003c0003t0003 others(2): Show a0001c0001t0001 a0002c0002t0005 a0003c0003t0003 a0018c0037t0013 a0024c0029t0011	a0001c0001t0001g0044 a0002c0002t0005g0016 a0003c0003t0003g0056 others(2): Show a0001c0001t0001g0044 a0002c0002t0005g0016 a0003c0003t0003g0056 a0018c0037t0013g0062 a0024c0029t0011g0099	5	102	0.0490	7	c.92- others(24): Show c.92-31980_92-31974dupTTTTTTT	PCDH15	ENSG00000150275.20	transcript	ENST00000644397.2	protein_coding	2/37			chr10	TogoVar
PCDH15_chr10_53797771_54806231	54561980	C C	CTTTTTTT CTTTTTTT	intron_variant intron_variant	MODIFIER	HG00642.hp2 HG02027.hp1 HG02145.hp2 others(2): Show HG00642.hp2 HG02027.hp1 HG02145.hp2 HG02615.hp2 HG03942.hp2	a0001 a0002 a0003 others(1): Show a0001 a0002 a0003 a0022	a0001c0001 a0002c0002 a0003c0003 others(1): Show a0001c0001 a0002c0002 a0003c0003 a0022c0028	a0001c0001t0002 a0001c0001t0008 a0002c0002t0002 others(2): Show a0001c0001t0002 a0001c0001t0008 a0002c0002t0002 a0003c0003t0002 a0022c0028t0004	a0001c0001t0002g0070 a0001c0001t0008g0003 a0002c0002t0002g0063 others(2): Show a0001c0001t0002g0070 a0001c0001t0008g0003 a0002c0002t0002g0063 a0003c0003t0002g0020 a0022c0028t0004g0013	5	102	0.0490	7	c.92- others(24): Show c.92-34110_92-34104dupAAAAAAA	PCDH15	ENSG00000150275.20	transcript	ENST00000644397.2	protein_coding	2/37			chr10	TogoVar
PCDH15_chr10_53797771_54806231	54686041	A A	ATTTTTTT ATTTTTTT	intron_variant intron_variant	MODIFIER	HG00642.hp2 HG00741.hp2 HG02027.hp1 others(4): Show HG00642.hp2 HG00741.hp2 HG02027.hp1 HG02886.hp2 HG03139.hp2 HG03540.hp2 HG03942.hp2	a0001 a0002 a0003 others(3): Show a0001 a0002 a0003 a0027 a0030 a0037	a0001c0001 a0002c0002 a0003c0003 others(3): Show a0001c0001 a0002c0002 a0003c0003 a0027c0031 a0030c0036 a0037c0018	a0001c0001t0002 a0002c0002t0002 a0002c0002t0024 others(4): Show a0001c0001t0002 a0002c0002t0002 a0002c0002t0024 a0003c0003t0002 a0027c0031t0010 a0030c0036t0004 a0037c0018t0001	a0001c0001t0002g0070 a0002c0002t0002g0063 a0002c0002t0024g0069 others(4): Show a0001c0001t0002g0070 a0002c0002t0002g0063 a0002c0002t0024g0069 a0003c0003t0002g0020 a0027c0031t0010g0066 a0030c0036t0004g0061 a0037c0018t0001g0004	7	102	0.0686	7	c.-28 others(26): Show c.-28-21758_-28-21752dupAAAAAAA	PCDH15	ENSG00000150275.20	transcript	ENST00000644397.2	protein_coding	1/37			chr10	TogoVar
PCDH15_chr10_53816099_54806231	53888702	T T	TATATATA TATATATA	intron_variant intron_variant	MODIFIER	HG02602.hp1 HG02965.hp2 HG03942.hp2 others(2): Show HG02602.hp1 HG02965.hp2 HG03942.hp2 NA18906.hp2 NA20905.hp1	a0003 a0004 a0005 others(1): Show a0003 a0004 a0005 a0006	a0003c0003 a0003c0005 a0004c0004 others(2): Show a0003c0003 a0003c0005 a0004c0004 a0005c0035 a0006c0008	a0003c0003t0001 a0003c0005t0001 a0004c0004t0001 others(2): Show a0003c0003t0001 a0003c0005t0001 a0004c0004t0001 a0005c0035t0001 a0006c0008t0001	a0003c0003t0001g0009 a0003c0005t0001g0020 a0004c0004t0001g0048 others(2): Show a0003c0003t0001g0009 a0003c0005t0001g0020 a0004c0004t0001g0048 a0005c0035t0001g0086 a0006c0008t0001g0053	5	94	0.0532	7	c.350 others(28): Show c.3501+14540_3501+14541insTATATAT	PCDH15	ENSG00000150275.20	transcript	ENST00000320301.11	protein_coding	26/32			chr10	TogoVar
PCDH15_chr10_53816099_54806231	53957503	G G	GTTTTTTT GTTTTTTT	intron_variant intron_variant	MODIFIER	HG01884.hp1 HG02258.hp2 HG03098.hp2 others(3): Show HG01884.hp1 HG02258.hp2 HG03098.hp2 HG03669.hp2 NA18906.hp2 NA19240.hp1	a0001 a0003 a0004 others(1): Show a0001 a0003 a0004 a0014	a0001c0001 a0003c0003 a0004c0004 others(1): Show a0001c0001 a0003c0003 a0004c0004 a0014c0012	a0001c0001t0001 a0001c0001t0002 a0003c0003t0001 others(2): Show a0001c0001t0001 a0001c0001t0002 a0003c0003t0001 a0004c0004t0001 a0014c0012t0001	a0001c0001t0001g0006 a0001c0001t0001g0014 a0001c0001t0002g0028 others(3): Show a0001c0001t0001g0006 a0001c0001t0001g0014 a0001c0001t0002g0028 a0003c0003t0001g0009 a0004c0004t0001g0042 a0014c0012t0001g0008	6	94	0.0638	7	c.312 others(26): Show c.3122+2222_3122+2228dupAAAAAAA	PCDH15	ENSG00000150275.20	transcript	ENST00000320301.11	protein_coding	23/32			chr10	TogoVar
PCDH15_chr10_53816099_54806231	53961130	A A	ATACCACT ATACCACT	intron_variant intron_variant	MODIFIER	HG03041.hp1 HG03209.hp1 HG03041.hp1 HG03209.hp1	a0001 a0015 a0001 a0015	a0001c0007 a0015c0011 a0001c0007 a0015c0011	a0001c0007t0001 a0015c0011t0001 a0001c0007t0001 a0015c0011t0001	a0001c0007t0001g0090 a0015c0011t0001g0078 a0001c0007t0001g0090 a0015c0011t0001g0078	2	94	0.0213	7	c.300 others(24): Show c.3009+621_3009+622insAGTGGTA	PCDH15	ENSG00000150275.20	transcript	ENST00000320301.11	protein_coding	22/32			chr10	TogoVar
PCDH15_chr10_53816099_54806231	54004426	C C	CACACACA CACACACA	intron_variant intron_variant	MODIFIER	HG00735.hp1 HG00735.hp2 HG01069.hp1 others(17): Show HG00735.hp1 HG00735.hp2 HG01069.hp1 HG01175.hp2 HG02145.hp2 HG02280.hp1 HG02602.hp1 HG02965.hp1 HG02965.hp2 HG03041.hp2 HG03471.hp2 HG03486.hp2 HG03492.hp1 HG03492.hp2 HG03540.hp1 HG03942.hp2 NA18906.hp2 NA18945.hp2 NA19043.hp2 NA19240.hp1	a0003 a0004 a0005 others(6): Show a0003 a0004 a0005 a0006 a0010 a0011 a0014 a0024 a0026	a0003c0003 a0003c0005 a0003c0025 others(11): Show a0003c0003 a0003c0005 a0003c0025 a0004c0004 a0005c0009 a0005c0035 a0005c0036 a0006c0008 a0006c0042 a0010c0010 a0011c0021 a0014c0012 a0024c0040 a0026c0026	a0003c0003t0001 a0003c0003t0002 a0003c0005t0001 others(13): Show a0003c0003t0001 a0003c0003t0002 a0003c0005t0001 a0003c0025t0001 a0004c0004t0001 a0004c0004t0005 a0005c0009t0002 a0005c0035t0001 a0005c0036t0001 a0006c0008t0001 a0006c0042t0001 a0010c0010t0003 a0011c0021t0001 a0014c0012t0001 a0024c0040t0001 a0026c0026t0001	a0003c0003t0001g0009 a0003c0003t0001g0017 a0003c0003t0001g0030 others(17): Show a0003c0003t0001g0009 a0003c0003t0001g0017 a0003c0003t0001g0030 a0003c0003t0001g0054 a0003c0003t0001g0084 a0003c0003t0002g0080 a0003c0005t0001g0020 a0003c0025t0001g0018 a0004c0004t0001g0048 a0004c0004t0005g0029 a0005c0009t0002g0070 a0005c0035t0001g0086 a0005c0036t0001g0077 a0006c0008t0001g0043 a0006c0042t0001g0047 a0010c0010t0003g0068 a0011c0021t0001g0066 a0014c0012t0001g0008 a0024c0040t0001g0092 a0026c0026t0001g0056	20	94	0.2128	7	c.275 others(26): Show c.2752-8662_2752-8661insTGTGTGT	PCDH15	ENSG00000150275.20	transcript	ENST00000320301.11	protein_coding	20/32			chr10	TogoVar
PCDH15_chr10_53816099_54806231	54099513	A A	AAATATAT AAATATAT	intron_variant intron_variant	MODIFIER	HG02258.hp2 HG03041.hp2 HG03098.hp2 others(1): Show HG02258.hp2 HG03041.hp2 HG03098.hp2 NA20129.hp1	a0001 a0005 a0012 a0001 a0005 a0012	a0001c0001 a0005c0036 a0012c0020 a0001c0001 a0005c0036 a0012c0020	a0001c0001t0001 a0001c0001t0002 a0005c0036t0001 others(1): Show a0001c0001t0001 a0001c0001t0002 a0005c0036t0001 a0012c0020t0001	a0001c0001t0001g0006 a0001c0001t0002g0028 a0005c0036t0001g0077 others(1): Show a0001c0001t0001g0006 a0001c0001t0002g0028 a0005c0036t0001g0077 a0012c0020t0001g0025	4	94	0.0426	7	c.191 others(26): Show c.1918-9451_1918-9450insATATATT	PCDH15	ENSG00000150275.20	transcript	ENST00000320301.11	protein_coding	15/32			chr10	TogoVar
PCDH15_chr10_53816099_54806231	54182022	A A	ATCTTGGT ATCTTGGT	intron_variant intron_variant	MODIFIER	HG01069.hp1 HG02145.hp1 HG02258.hp1 others(9): Show HG01069.hp1 HG02145.hp1 HG02258.hp1 HG02922.hp1 HG03041.hp1 HG03098.hp1 HG03209.hp1 HG03209.hp2 HG03486.hp1 HG03540.hp2 HG03579.hp2 HG06807.hp1	a0001 a0002 a0006 others(7): Show a0001 a0002 a0006 a0015 a0018 a0022 a0024 a0025 a0031 a0032	a0001c0007 a0002c0002 a0002c0029 others(8): Show a0001c0007 a0002c0002 a0002c0029 a0006c0008 a0015c0011 a0018c0034 a0022c0039 a0024c0040 a0025c0041 a0031c0032 a0032c0023	a0001c0007t0001 a0002c0002t0002 a0002c0029t0001 others(8): Show a0001c0007t0001 a0002c0002t0002 a0002c0029t0001 a0006c0008t0001 a0015c0011t0001 a0018c0034t0003 a0022c0039t0001 a0024c0040t0001 a0025c0041t0002 a0031c0032t0001 a0032c0023t0006	a0001c0007t0001g0079 a0001c0007t0001g0090 a0002c0002t0002g0071 others(9): Show a0001c0007t0001g0079 a0001c0007t0001g0090 a0002c0002t0002g0071 a0002c0029t0001g0024 a0006c0008t0001g0027 a0015c0011t0001g0078 a0018c0034t0003g0013 a0022c0039t0001g0093 a0024c0040t0001g0092 a0025c0041t0002g0057 a0031c0032t0001g0072 a0032c0023t0006g0001	12	94	0.1277	7	c.159 others(26): Show c.1590+1415_1590+1421dupACCAAGA	PCDH15	ENSG00000150275.20	transcript	ENST00000320301.11	protein_coding	13/32			chr10	TogoVar
PCDH15_chr10_53816099_54806231	54198495	C C	CTTTTTTT CTTTTTTT	intron_variant intron_variant	MODIFIER	HG00642.hp1 HG00738.hp1 HG00738.hp2 others(7): Show HG00642.hp1 HG00738.hp1 HG00738.hp2 HG01081.hp2 HG01192.hp1 HG01884.hp1 HG01981.hp2 HG02615.hp2 HG03098.hp2 NA19043.hp2	a0001 a0008 a0010 a0001 a0008 a0010	a0001c0001 a0008c0016 a0010c0010 a0001c0001 a0008c0016 a0010c0010	a0001c0001t0001 a0008c0016t0001 a0010c0010t0003 a0001c0001t0001 a0008c0016t0001 a0010c0010t0003	a0001c0001t0001g0003 a0001c0001t0001g0006 a0001c0001t0001g0014 others(7): Show a0001c0001t0001g0003 a0001c0001t0001g0006 a0001c0001t0001g0014 a0001c0001t0001g0021 a0001c0001t0001g0036 a0001c0001t0001g0041 a0001c0001t0001g0064 a0001c0001t0001g0083 a0008c0016t0001g0012 a0010c0010t0003g0068	10	94	0.1064	7	c.109 others(26): Show c.1099-2613_1099-2607dupAAAAAAA	PCDH15	ENSG00000150275.20	transcript	ENST00000320301.11	protein_coding	10/32			chr10	TogoVar
PCDH15_chr10_53816099_54806231	54232924	C C	CTTTTTTT CTTTTTTT	intron_variant intron_variant	MODIFIER	HG01069.hp1 HG01243.hp1 HG02258.hp1 others(2): Show HG01069.hp1 HG01243.hp1 HG02258.hp1 HG02622.hp1 HG03209.hp1	a0001 a0008 a0015 others(2): Show a0001 a0008 a0015 a0024 a0032	a0001c0001 a0008c0015 a0015c0011 others(2): Show a0001c0001 a0008c0015 a0015c0011 a0024c0040 a0032c0023	a0001c0001t0001 a0008c0015t0001 a0015c0011t0001 others(2): Show a0001c0001t0001 a0008c0015t0001 a0015c0011t0001 a0024c0040t0001 a0032c0023t0006	a0001c0001t0001g0082 a0008c0015t0001g0032 a0015c0011t0001g0078 others(2): Show a0001c0001t0001g0082 a0008c0015t0001g0032 a0015c0011t0001g0078 a0024c0040t0001g0092 a0032c0023t0006g0001	5	94	0.0532	7	c.985 others(24): Show c.985+3892_985+3898dupAAAAAAA	PCDH15	ENSG00000150275.20	transcript	ENST00000320301.11	protein_coding	9/32			chr10	TogoVar
PCDH15_chr10_53816099_54806231	54375896	T T	TATATATA TATATATA	intron_variant intron_variant	MODIFIER	HG01192.hp1 HG02602.hp1 HG03492.hp2 others(1): Show HG01192.hp1 HG02602.hp1 HG03492.hp2 NA19043.hp2	a0001 a0005 a0010 others(1): Show a0001 a0005 a0010 a0011	a0001c0001 a0005c0035 a0010c0010 others(1): Show a0001c0001 a0005c0035 a0010c0010 a0011c0021	a0001c0001t0001 a0005c0035t0001 a0010c0010t0003 others(1): Show a0001c0001t0001 a0005c0035t0001 a0010c0010t0003 a0011c0021t0001	a0001c0001t0001g0083 a0005c0035t0001g0086 a0010c0010t0003g0068 others(1): Show a0001c0001t0001g0083 a0005c0035t0001g0086 a0010c0010t0003g0068 a0011c0021t0001g0066	4	94	0.0426	7	c.318 others(24): Show c.318+2885_318+2886insTATATAT	PCDH15	ENSG00000150275.20	transcript	ENST00000320301.11	protein_coding	4/32			chr10	TogoVar
PCDH15_chr10_53816099_54806231	54436031	G G	GGAGAGGA GGAGAGGA	intron_variant intron_variant	MODIFIER	HG06807.hp2 NA20129.hp2 HG06807.hp2 NA20129.hp2	a0002 a0029 a0002 a0029	a0002c0002 a0029c0030 a0002c0002 a0029c0030	a0002c0002t0001 a0029c0030t0001 a0002c0002t0001 a0029c0030t0001	a0002c0002t0001g0034 a0029c0030t0001g0035 a0002c0002t0001g0034 a0029c0030t0001g0035	2	94	0.0213	7	c.158 others(26): Show c.158-57090_158-57089insTCCTCTC	PCDH15	ENSG00000150275.20	transcript	ENST00000320301.11	protein_coding	3/32			chr10	TogoVar
PCDH15_chr10_53816099_54806231	54559850	T T	TAAAAAAA TAAAAAAA	intron_variant intron_variant	MODIFIER	HG01175.hp2 HG01981.hp2 HG02486.hp2 others(2): Show HG01175.hp2 HG01981.hp2 HG02486.hp2 HG02615.hp1 HG03579.hp1	a0001 a0002 a0003 others(2): Show a0001 a0002 a0003 a0016 a0020	a0001c0001 a0002c0006 a0003c0003 others(2): Show a0001c0001 a0002c0006 a0003c0003 a0016c0043 a0020c0037	a0001c0001t0001 a0002c0006t0001 a0003c0003t0001 others(2): Show a0001c0001t0001 a0002c0006t0001 a0003c0003t0001 a0016c0043t0004 a0020c0037t0001	a0001c0001t0001g0041 a0002c0006t0001g0016 a0003c0003t0001g0054 others(2): Show a0001c0001t0001g0041 a0002c0006t0001g0016 a0003c0003t0001g0054 a0016c0043t0004g0058 a0020c0037t0001g0091	5	94	0.0532	7	c.92- others(24): Show c.92-31980_92-31974dupTTTTTTT	PCDH15	ENSG00000150275.20	transcript	ENST00000320301.11	protein_coding	2/32			chr10	TogoVar
PCDH15_chr10_53816099_54806231	54561980	C C	CTTTTTTT CTTTTTTT	intron_variant intron_variant	MODIFIER	HG00642.hp1 HG02027.hp1 HG02145.hp1 others(2): Show HG00642.hp1 HG02027.hp1 HG02145.hp1 HG02615.hp2 HG03942.hp2	a0001 a0002 a0003 others(1): Show a0001 a0002 a0003 a0018	a0001c0001 a0002c0006 a0003c0005 others(1): Show a0001c0001 a0002c0006 a0003c0005 a0018c0034	a0001c0001t0001 a0002c0006t0001 a0003c0005t0001 others(1): Show a0001c0001t0001 a0002c0006t0001 a0003c0005t0001 a0018c0034t0003	a0001c0001t0001g0003 a0001c0001t0001g0064 a0002c0006t0001g0059 others(2): Show a0001c0001t0001g0003 a0001c0001t0001g0064 a0002c0006t0001g0059 a0003c0005t0001g0020 a0018c0034t0003g0013	5	94	0.0532	7	c.92- others(24): Show c.92-34110_92-34104dupAAAAAAA	PCDH15	ENSG00000150275.20	transcript	ENST00000320301.11	protein_coding	2/32			chr10	TogoVar
PCDH15_chr10_53816099_54806231	54686041	A A	ATTTTTTT ATTTTTTT	intron_variant intron_variant	MODIFIER	HG00642.hp1 HG00741.hp2 HG02027.hp1 others(3): Show HG00642.hp1 HG00741.hp2 HG02027.hp1 HG03139.hp2 HG03540.hp2 HG03942.hp2	a0001 a0002 a0003 others(2): Show a0001 a0002 a0003 a0025 a0033	a0001c0001 a0002c0002 a0002c0006 others(3): Show a0001c0001 a0002c0002 a0002c0006 a0003c0005 a0025c0041 a0033c0022	a0001c0001t0001 a0002c0002t0001 a0002c0006t0001 others(3): Show a0001c0001t0001 a0002c0002t0001 a0002c0006t0001 a0003c0005t0001 a0025c0041t0002 a0033c0022t0001	a0001c0001t0001g0064 a0002c0002t0001g0063 a0002c0006t0001g0059 others(3): Show a0001c0001t0001g0064 a0002c0002t0001g0063 a0002c0006t0001g0059 a0003c0005t0001g0020 a0025c0041t0002g0057 a0033c0022t0001g0004	6	94	0.0638	7	c.-28 others(26): Show c.-28-21758_-28-21752dupAAAAAAA	PCDH15	ENSG00000150275.20	transcript	ENST00000320301.11	protein_coding	1/32			chr10	TogoVar
PCDH19_chrX_100286644_100415273	100333161	G G	GAGAGAGA GAGAGAGA	intron_variant intron_variant	MODIFIER	NA19084.hp2 NA19084.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0222 a0001c0001t0001g0222	1	281	0.0036	7	c.284 others(26): Show c.2848+8741_2848+8742insTCTCTCT	PCDH19	ENSG00000165194.15	transcript	ENST00000373034.8	protein_coding	5/5			chrX	TogoVar
PCDH19_chrX_100286644_100415273	100333165	G G	GAGAGAGA GAGAGAGA	intron_variant intron_variant	MODIFIER	HG01993.hp2 HG01993.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0001	a0001c0001t0001g0209 a0001c0001t0001g0209	1	281	0.0036	7	c.284 others(26): Show c.2848+8737_2848+8738insTCTCTCT	PCDH19	ENSG00000165194.15	transcript	ENST00000373034.8	protein_coding	5/5			chrX	TogoVar

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