Joint Open Genome and Omics Platform (JoGo)

Search by Variant

Regionname

e.g. ALDH2_chr12_111761933_111822532, HBB_chr11_5220464_5232071.

Chr

Chromosome name (e.g., chr11).

Snpeff genename

Exact SnpEff gene name.

Sampleids

Target sampleid (e.g. HG02615).

Snpeff haplotype class

Haplotype-annotation class (e.g., ahapid, ahapid+chapid).

Snpeff annotation impact

Exact impact level (e.g., HIGH, MODERATE, LOW).

Snpeff annotation impact detail

Keyword match in SnpEff annotation.

Hapid

One or more haplotype IDs (comma-separated; e.g., a0001, a01, a0001c0001, a01c02, a1c2, a0001c0001t0005, a0001c0001t0005g0018).

Samplehapid

Sample haplotype IDs to include (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

No_hapid

Haplotype IDs to exclude (comma-separated; e.g., a0001, a0002, a0001c0001, a0001c0001t0005, a1, a01).

No_samplehapid

Sample haplotype IDs to exclude (comma-separated; e.g., HG02257.hp1, HG02615.hp2, HG00673.hp2).

Start

Start position (GRCh38).

End

End position (GRCh38).

Minac

Minimum alternate allele count (≥).

Maxac

Maximum alternate allele count (≤).

Minlen

Minimum variant length (≥).

Maxlen

Maximum variant length (≤).

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⚠️ Results limited to 10,000 hits. Refine your search for more specific results.

regionname	pos	ref	alt	annotation	impact	samples	ahapids	achapids	acthapids	actghapids	ac	an	af	len	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	external
PCDH19_chrX_100286644_100415273	100333249	G G	GAAAGAAA GAAAGAAA	intron_variant intron_variant	MODIFIER	HG02647.hp1 HG02647.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0002 a0001c0001t0002	a0001c0001t0002g0135 a0001c0001t0002g0135	1	281	0.0036	7	c.284 others(26): Show c.2848+8653_2848+8654insTTTCTTT	PCDH19	ENSG00000165194.15	transcript	ENST00000373034.8	protein_coding	5/5			chrX	TogoVar
PCDH19_chrX_100286644_100415273	100379347	A A	ACACACAC ACACACAC	intron_variant intron_variant	MODIFIER	HG02293.hp2 HG02895.hp1 HG02897.hp2 others(11): Show HG02293.hp2 HG02895.hp1 HG02897.hp2 HG03704.hp2 HG03710.hp1 NA18943.hp1 NA18953.hp1 NA18955.hp1 NA18957.hp2 NA18962.hp1 NA18965.hp1 NA18975.hp2 NA18985.hp1 NA19072.hp1	a0001 a0002 a0003 others(1): Show a0001 a0002 a0003 a0004	a0001c0001 a0001c0010 a0002c0005 others(2): Show a0001c0001 a0001c0010 a0002c0005 a0003c0007 a0004c0011	a0001c0001t0001 a0001c0001t0002 a0001c0001t0022 others(4): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0022 a0001c0010t0001 a0002c0005t0003 a0003c0007t0001 a0004c0011t0014	a0001c0001t0001g0172 a0001c0001t0001g0182 a0001c0001t0001g0190 others(11): Show a0001c0001t0001g0172 a0001c0001t0001g0182 a0001c0001t0001g0190 a0001c0001t0001g0221 a0001c0001t0001g0241 a0001c0001t0001g0255 a0001c0001t0001g0258 a0001c0001t0002g0108 a0001c0001t0002g0109 a0001c0001t0022g0229 a0001c0010t0001g0159 a0002c0005t0003g0085 a0003c0007t0001g0174 a0004c0011t0014g0168	14	281	0.0498	7	c.261 others(28): Show c.2616+23176_2616+23177insGTGTGTG	PCDH19	ENSG00000165194.15	transcript	ENST00000373034.8	protein_coding	3/5			chrX	TogoVar
PCDH1_chr5_141848090_141883410	141882686	C C	CGCCTCCT CGCCTCCT	upstream_gene_variant upstream_gene_variant	MODIFIER	HG01175.hp1 HG02109.hp2 HG03654.hp1 others(3): Show HG01175.hp1 HG02109.hp2 HG03654.hp1 HG03654.hp2 HG03688.hp1 HG03688.hp2	a0001 a0003 a0001 a0003	a0001c0001 a0001c0002 a0003c0004 a0001c0001 a0001c0002 a0003c0004	a0001c0001t0001 a0001c0002t0001 a0003c0004t0001 a0001c0001t0001 a0001c0002t0001 a0003c0004t0001	a0001c0001t0001g0001 a0001c0001t0001g0002 a0001c0001t0001g0032 others(3): Show a0001c0001t0001g0001 a0001c0001t0001g0002 a0001c0001t0001g0032 a0001c0001t0001g0122 a0001c0002t0001g0099 a0003c0004t0001g0101	6	384	0.0156	7	c.-44 others(18): Show c.-4425_-4424insAGGAGGC	PCDH1	ENSG00000156453.14	transcript	ENST00000287008.8	protein_coding		4277		chr5	TogoVar
PCDH7_chr4_30715369_31151800	30764446	G G	GTTTATCA GTTTATCA	intron_variant intron_variant	MODIFIER	HG02109.hp1 HG02647.hp2 HG02717.hp2 others(1): Show HG02109.hp1 HG02647.hp2 HG02717.hp2 NA18522.hp1	a0001 a0001	a0001c0004 a0001c0004	a0001c0004t0001 a0001c0004t0007 a0001c0004t0001 a0001c0004t0007	a0001c0004t0001g0015 a0001c0004t0007g0016 a0001c0004t0007g0018 others(1): Show a0001c0004t0001g0015 a0001c0004t0007g0016 a0001c0004t0007g0018 a0001c0004t0007g0021	4	214	0.0187	7	c.317 others(28): Show c.3174+39864_3174+39870dupATTTATC	PCDH7	ENSG00000169851.16	transcript	ENST00000695919.1	protein_coding	1/2		INFO_REALIGN_3_PRIME	chr4	TogoVar
PCDH7_chr4_30715369_31151800	30894490	A A	AAATATAT AAATATAT	intron_variant intron_variant	MODIFIER	HG02083.hp2 HG03834.hp1 NA18966.hp1 others(3): Show HG02083.hp2 HG03834.hp1 NA18966.hp1 NA18982.hp2 NA19079.hp1 NA19090.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0003 a0001c0001t0005 a0001c0002t0003 others(1): Show a0001c0001t0003 a0001c0001t0005 a0001c0002t0003 a0001c0002t0004	a0001c0001t0003g0100 a0001c0001t0005g0027 a0001c0002t0003g0122 others(3): Show a0001c0001t0003g0100 a0001c0001t0005g0027 a0001c0002t0003g0122 a0001c0002t0004g0123 a0001c0002t0004g0159 a0001c0002t0004g0162	6	214	0.0280	7	c.317 others(28): Show c.3175-25662_3175-25661insATATATA	PCDH7	ENSG00000169851.16	transcript	ENST00000695919.1	protein_coding	1/2		INFO_REALIGN_3_PRIME	chr4	TogoVar
PCDH7_chr4_30715369_31151800	30894490	A A	ATATATAT ATATATAT	intron_variant intron_variant	MODIFIER	HG02040.hp1 HG02083.hp1 NA18948.hp2 others(2): Show HG02040.hp1 HG02083.hp1 NA18948.hp2 NA18950.hp1 NA18960.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0005 a0001c0001t0014 a0001c0001t0025 others(1): Show a0001c0001t0005 a0001c0001t0014 a0001c0001t0025 a0001c0002t0002	a0001c0001t0005g0035 a0001c0001t0014g0038 a0001c0001t0025g0036 others(2): Show a0001c0001t0005g0035 a0001c0001t0014g0038 a0001c0001t0025g0036 a0001c0002t0002g0124 a0001c0002t0002g0151	5	214	0.0234	7	c.317 others(28): Show c.3175-25663_3175-25662insTATATAT	PCDH7	ENSG00000169851.16	transcript	ENST00000695919.1	protein_coding	1/2			chr4	TogoVar
PCDH7_chr4_30715369_31151800	30896889	C C	CTTTTTTT CTTTTTTT	intron_variant intron_variant	MODIFIER	HG00738.hp1 HG01099.hp1 HG01515.hp2 others(13): Show HG00738.hp1 HG01099.hp1 HG01515.hp2 HG02071.hp1 HG02145.hp2 HG02257.hp1 HG02258.hp2 HG02559.hp1 HG02717.hp2 HG02886.hp1 HG03486.hp1 HG04199.hp1 HG04204.hp1 NA18990.hp1 NA18998.hp2 NA18999.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0003 others(2): Show a0001c0001 a0001c0002 a0001c0003 a0001c0004 a0001c0005	a0001c0001t0001 a0001c0001t0002 a0001c0001t0006 others(7): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0006 a0001c0001t0009 a0001c0001t0039 a0001c0001t0049 a0001c0002t0002 a0001c0003t0012 a0001c0004t0007 a0001c0005t0001	a0001c0001t0001g0168 a0001c0001t0001g0169 a0001c0001t0001g0175 others(13): Show a0001c0001t0001g0168 a0001c0001t0001g0169 a0001c0001t0001g0175 a0001c0001t0001g0183 a0001c0001t0001g0192 a0001c0001t0001g0194 a0001c0001t0001g0204 a0001c0001t0002g0176 a0001c0001t0006g0097 a0001c0001t0009g0171 a0001c0001t0039g0207 a0001c0001t0049g0195 a0001c0002t0002g0136 a0001c0003t0012g0006 a0001c0004t0007g0018 a0001c0005t0001g0103	16	214	0.0748	7	c.317 others(28): Show c.3175-23237_3175-23231dupTTTTTTT	PCDH7	ENSG00000169851.16	transcript	ENST00000695919.1	protein_coding	1/2		INFO_REALIGN_3_PRIME	chr4	TogoVar
PCDH7_chr4_30715369_31151800	31056458	G G	GAAAAAGA GAAAAAGA	intron_variant intron_variant	MODIFIER	HG00140.hp2 HG01952.hp1 HG01975.hp1 others(4): Show HG00140.hp2 HG01952.hp1 HG01975.hp1 HG02074.hp1 HG02572.hp2 HG02615.hp1 NA21309.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0005 others(1): Show a0001c0001 a0001c0002 a0001c0005 a0001c0008	a0001c0001t0001 a0001c0001t0013 a0001c0002t0002 others(3): Show a0001c0001t0001 a0001c0001t0013 a0001c0002t0002 a0001c0002t0006 a0001c0005t0022 a0001c0008t0010	a0001c0001t0001g0019 a0001c0001t0013g0179 a0001c0001t0013g0180 others(4): Show a0001c0001t0001g0019 a0001c0001t0013g0179 a0001c0001t0013g0180 a0001c0002t0002g0157 a0001c0002t0006g0161 a0001c0005t0022g0102 a0001c0008t0010g0213	7	214	0.0327	7	c.339 others(28): Show c.3392-86013_3392-86012insAAAGAAA	PCDH7	ENSG00000169851.16	transcript	ENST00000695919.1	protein_coding	2/2		INFO_REALIGN_3_PRIME	chr4	TogoVar
PCDH7_chr4_30715369_31151800	31069362	G G	GTGCCTCA GTGCCTCA	intron_variant intron_variant	MODIFIER	HG00738.hp1 HG01192.hp2 HG00738.hp1 HG01192.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0009 a0001c0002t0009 a0001c0001t0009 a0001c0002t0009	a0001c0001t0009g0171 a0001c0002t0009g0156 a0001c0001t0009g0171 a0001c0002t0009g0156	2	214	0.0094	7	c.339 others(28): Show c.3392-73103_3392-73097dupTGCCTCA	PCDH7	ENSG00000169851.16	transcript	ENST00000695919.1	protein_coding	2/2		INFO_REALIGN_3_PRIME	chr4	TogoVar
PCDH7_chr4_30715369_31151800	31074755	A A	AGCCTGGG AGCCTGGG	intron_variant intron_variant	MODIFIER	HG01109.hp1 HG02647.hp1 HG02647.hp2 others(4): Show HG01109.hp1 HG02647.hp1 HG02647.hp2 HG03041.hp1 HG03471.hp2 NA18522.hp1 NA19240.hp2	a0001 a0001	a0001c0001 a0001c0003 a0001c0004 a0001c0001 a0001c0003 a0001c0004	a0001c0001t0002 a0001c0001t0006 a0001c0001t0021 others(3): Show a0001c0001t0002 a0001c0001t0006 a0001c0001t0021 a0001c0001t0022 a0001c0003t0048 a0001c0004t0007	a0001c0001t0002g0200 a0001c0001t0006g0118 a0001c0001t0021g0107 others(4): Show a0001c0001t0002g0200 a0001c0001t0006g0118 a0001c0001t0021g0107 a0001c0001t0022g0203 a0001c0003t0048g0007 a0001c0004t0007g0016 a0001c0004t0007g0021	7	214	0.0327	7	c.339 others(28): Show c.3392-67717_3392-67711dupGCCTGGG	PCDH7	ENSG00000169851.16	transcript	ENST00000695919.1	protein_coding	2/2		INFO_REALIGN_3_PRIME	chr4	TogoVar
PCDH7_chr4_30715369_31151800	31096928	T T	TGTGTGTG TGTGTGTG	intron_variant intron_variant	MODIFIER	HG01099.hp2 HG01192.hp1 HG01496.hp2 others(3): Show HG01099.hp2 HG01192.hp1 HG01496.hp2 HG01993.hp2 HG02257.hp2 HG02683.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0012 a0001c0001 a0001c0002 a0001c0012	a0001c0001t0006 a0001c0001t0011 a0001c0002t0011 others(1): Show a0001c0001t0006 a0001c0001t0011 a0001c0002t0011 a0001c0012t0046	a0001c0001t0006g0188 a0001c0001t0011g0181 a0001c0001t0011g0186 others(3): Show a0001c0001t0006g0188 a0001c0001t0011g0181 a0001c0001t0011g0186 a0001c0001t0011g0202 a0001c0002t0011g0133 a0001c0012t0046g0008	6	214	0.0280	7	c.339 others(28): Show c.3392-45545_3392-45544insGTGTGTG	PCDH7	ENSG00000169851.16	transcript	ENST00000695919.1	protein_coding	2/2			chr4	TogoVar
PCDH7_chr4_30715369_31151800	31097638	A A	ATAAAATC ATAAAATC	intron_variant intron_variant	MODIFIER	HG02155.hp2 HG02615.hp2 HG02647.hp1 others(4): Show HG02155.hp2 HG02615.hp2 HG02647.hp1 HG02976.hp1 HG03017.hp2 HG03579.hp2 NA18948.hp2	a0001 a0001	a0001c0001 a0001c0002 a0001c0001 a0001c0002	a0001c0001t0001 a0001c0001t0003 a0001c0001t0021 others(2): Show a0001c0001t0001 a0001c0001t0003 a0001c0001t0021 a0001c0001t0025 a0001c0002t0038	a0001c0001t0001g0014 a0001c0001t0001g0120 a0001c0001t0003g0054 others(4): Show a0001c0001t0001g0014 a0001c0001t0001g0120 a0001c0001t0003g0054 a0001c0001t0021g0013 a0001c0001t0021g0107 a0001c0001t0025g0036 a0001c0002t0038g0121	7	214	0.0327	7	c.339 others(28): Show c.3392-44835_3392-44834insTAAAATC	PCDH7	ENSG00000169851.16	transcript	ENST00000695919.1	protein_coding	2/2			chr4	TogoVar
PCDH7_chr4_30715369_31151800	31097638	A A	ATATAATC ATATAATC	intron_variant intron_variant	MODIFIER	HG02071.hp2 HG02698.hp1 HG03831.hp2 others(2): Show HG02071.hp2 HG02698.hp1 HG03831.hp2 NA18522.hp2 NA19011.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0005 a0001c0001t0018 others(2): Show a0001c0001t0001 a0001c0001t0005 a0001c0001t0018 a0001c0001t0019 a0001c0001t0023	a0001c0001t0001g0051 a0001c0001t0005g0045 a0001c0001t0018g0078 others(2): Show a0001c0001t0001g0051 a0001c0001t0005g0045 a0001c0001t0018g0078 a0001c0001t0019g0177 a0001c0001t0023g0042	5	214	0.0234	7	c.339 others(28): Show c.3392-44835_3392-44834insTATAATC	PCDH7	ENSG00000169851.16	transcript	ENST00000695919.1	protein_coding	2/2			chr4	TogoVar
PCDH9_chr13_66297834_67235336	66437404	C C	CAAAAAAA CAAAAAAA	intron_variant intron_variant	MODIFIER	HG00438.hp1 HG00438.hp2 HG01261.hp2 others(10): Show HG00438.hp1 HG00438.hp2 HG01261.hp2 HG01978.hp1 HG01978.hp2 HG02738.hp1 HG02970.hp1 HG03041.hp2 HG03195.hp2 HG03540.hp1 NA18522.hp1 NA19043.hp2 NA19060.hp1	a0001 a0004 a0006 a0001 a0004 a0006	a0001c0001 a0001c0002 a0001c0003 others(4): Show a0001c0001 a0001c0002 a0001c0003 a0001c0004 a0001c0007 a0004c0009 a0006c0016	a0001c0001t0001 a0001c0001t0005 a0001c0002t0002 others(6): Show a0001c0001t0001 a0001c0001t0005 a0001c0002t0002 a0001c0002t0004 a0001c0003t0001 a0001c0004t0001 a0001c0007t0003 a0004c0009t0002 a0006c0016t0001	a0001c0001t0001g0051 a0001c0001t0005g0071 a0001c0002t0002g0011 others(10): Show a0001c0001t0001g0051 a0001c0001t0005g0071 a0001c0002t0002g0011 a0001c0002t0002g0017 a0001c0002t0004g0010 a0001c0002t0004g0012 a0001c0002t0004g0022 a0001c0003t0001g0030 a0001c0004t0001g0041 a0001c0007t0003g0028 a0001c0007t0003g0029 a0004c0009t0002g0003 a0006c0016t0001g0049	13	80	0.1625	7	c.334 others(30): Show c.3341-132383_3341-132377dupTTTTTTT	PCDH9	ENSG00000184226.15	transcript	ENST00000377865.7	protein_coding	4/4			chr13	TogoVar
PCDH9_chr13_66297834_67235336	66559817	A A	AAAAATAT AAAAATAT	intron_variant intron_variant	MODIFIER	HG00642.hp1 HG00735.hp1 HG00741.hp1 others(3): Show HG00642.hp1 HG00735.hp1 HG00741.hp1 HG02630.hp2 HG06807.hp1 NA19030.hp1	a0001 a0001	a0001c0001 a0001c0003 a0001c0006 a0001c0001 a0001c0003 a0001c0006	a0001c0001t0001 a0001c0001t0003 a0001c0003t0003 others(2): Show a0001c0001t0001 a0001c0001t0003 a0001c0003t0003 a0001c0006t0001 a0001c0006t0003	a0001c0001t0001g0057 a0001c0001t0003g0059 a0001c0001t0003g0070 others(3): Show a0001c0001t0001g0057 a0001c0001t0003g0059 a0001c0001t0003g0070 a0001c0003t0003g0032 a0001c0006t0001g0027 a0001c0006t0003g0026	6	80	0.0750	7	c.334 others(28): Show c.3340+71392_3340+71393insATATTTT	PCDH9	ENSG00000184226.15	transcript	ENST00000377865.7	protein_coding	4/4			chr13	TogoVar
PCDH9_chr13_66297834_67235336	66568994	C C	CTTTTTTT CTTTTTTT	intron_variant intron_variant	MODIFIER	HG00735.hp2 HG02717.hp2 HG02809.hp1 others(2): Show HG00735.hp2 HG02717.hp2 HG02809.hp1 HG03540.hp1 HG06807.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0001c0003 a0002c0005 a0001c0001 a0001c0003 a0002c0005	a0001c0001t0001 a0001c0001t0003 a0001c0001t0005 others(2): Show a0001c0001t0001 a0001c0001t0003 a0001c0001t0005 a0001c0003t0005 a0002c0005t0002	a0001c0001t0001g0060 a0001c0001t0003g0054 a0001c0001t0005g0071 others(2): Show a0001c0001t0001g0060 a0001c0001t0003g0054 a0001c0001t0005g0071 a0001c0003t0005g0035 a0002c0005t0002g0007	5	80	0.0625	7	c.334 others(28): Show c.3340+62209_3340+62215dupAAAAAAA	PCDH9	ENSG00000184226.15	transcript	ENST00000377865.7	protein_coding	4/4			chr13	TogoVar
PCDH9_chr13_66297834_67235336	66609954	C C	CTTTTTTT CTTTTTTT	intron_variant intron_variant	MODIFIER	HG01884.hp2 HG02622.hp2 HG03209.hp1 others(2): Show HG01884.hp2 HG02622.hp2 HG03209.hp1 HG03579.hp1 HG03579.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0001c0003 a0001c0004 others(1): Show a0001c0001 a0001c0003 a0001c0004 a0002c0005	a0001c0001t0012 a0001c0003t0005 a0001c0004t0001 others(2): Show a0001c0001t0012 a0001c0003t0005 a0001c0004t0001 a0001c0004t0011 a0002c0005t0002	a0001c0001t0012g0058 a0001c0003t0005g0036 a0001c0004t0001g0043 others(2): Show a0001c0001t0012g0058 a0001c0003t0005g0036 a0001c0004t0001g0043 a0001c0004t0011g0042 a0002c0005t0002g0006	5	80	0.0625	7	c.334 others(28): Show c.3340+21249_3340+21255dupAAAAAAA	PCDH9	ENSG00000184226.15	transcript	ENST00000377865.7	protein_coding	4/4			chr13	TogoVar
PCDH9_chr13_66297834_67235336	66653973	T T	TAAAAAAA TAAAAAAA	intron_variant intron_variant	MODIFIER	HG01261.hp1 HG01978.hp1 HG02622.hp2 others(3): Show HG01261.hp1 HG01978.hp1 HG02622.hp2 HG02738.hp2 NA18906.hp2 NA19043.hp1	a0001 a0001	a0001c0001 a0001c0002 a0001c0004 a0001c0001 a0001c0002 a0001c0004	a0001c0001t0001 a0001c0001t0003 a0001c0002t0002 others(3): Show a0001c0001t0001 a0001c0001t0003 a0001c0002t0002 a0001c0002t0003 a0001c0002t0004 a0001c0004t0011	a0001c0001t0001g0067 a0001c0001t0003g0056 a0001c0002t0002g0018 others(3): Show a0001c0001t0001g0067 a0001c0001t0003g0056 a0001c0002t0002g0018 a0001c0002t0003g0047 a0001c0002t0004g0012 a0001c0004t0011g0042	6	80	0.0750	7	c.313 others(28): Show c.3139-22569_3139-22563dupTTTTTTT	PCDH9	ENSG00000184226.15	transcript	ENST00000377865.7	protein_coding	3/4			chr13	TogoVar
PCDH9_chr13_66297834_67235336	66730876	G G	GTTTTTTT GTTTTTTT	intron_variant intron_variant	MODIFIER	HG02630.hp2 HG03098.hp1 HG03471.hp1 others(1): Show HG02630.hp2 HG03098.hp1 HG03471.hp1 HG03540.hp1	a0001 a0007 a0001 a0007	a0001c0001 a0001c0004 a0007c0008 a0001c0001 a0001c0004 a0007c0008	a0001c0001t0003 a0001c0001t0005 a0001c0004t0006 others(1): Show a0001c0001t0003 a0001c0001t0005 a0001c0004t0006 a0007c0008t0005	a0001c0001t0003g0059 a0001c0001t0005g0071 a0001c0004t0006g0040 others(1): Show a0001c0001t0003g0059 a0001c0001t0005g0071 a0001c0004t0006g0040 a0007c0008t0005g0044	4	80	0.0500	7	c.313 others(28): Show c.3139-99472_3139-99466dupAAAAAAA	PCDH9	ENSG00000184226.15	transcript	ENST00000377865.7	protein_coding	3/4			chr13	TogoVar
PCDH9_chr13_66297834_67235336	66818937	A A	AAAAAAAC AAAAAAAC	intron_variant intron_variant	MODIFIER	HG00099.hp2 HG00438.hp1 HG00642.hp1 others(51): Show HG00099.hp2 HG00438.hp1 HG00642.hp1 HG00735.hp2 HG00741.hp2 HG01109.hp1 HG01109.hp2 HG01167.hp1 HG01167.hp2 HG01175.hp1 HG01261.hp1 HG01261.hp2 HG01496.hp1 HG01496.hp2 HG01978.hp1 HG02132.hp1 HG02132.hp2 HG02145.hp1 HG02145.hp2 HG02165.hp2 HG02622.hp1 HG02622.hp2 HG02630.hp1 HG02630.hp2 HG02717.hp2 HG02738.hp1 HG02738.hp2 HG02809.hp1 HG02965.hp2 HG02970.hp1 HG02970.hp2 HG03098.hp2 HG03195.hp1 HG03209.hp1 HG03209.hp2 HG03239.hp1 HG03239.hp2 HG03471.hp2 HG03486.hp2 HG03540.hp1 HG03579.hp1 HG03579.hp2 HG03927.hp1 HG03927.hp2 HG04204.hp1 HG04204.hp2 HG06807.hp2 NA18522.hp2 NA18906.hp1 NA18950.hp1 NA18950.hp2 NA19030.hp1 NA19043.hp1 NA19060.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0001c0002 a0001c0003 others(4): Show a0001c0001 a0001c0002 a0001c0003 a0001c0004 a0001c0007 a0001c0011 a0002c0005	a0001c0001t0001 a0001c0001t0003 a0001c0001t0005 others(20): Show a0001c0001t0001 a0001c0001t0003 a0001c0001t0005 a0001c0001t0006 a0001c0001t0008 a0001c0001t0012 a0001c0001t0013 a0001c0001t0015 a0001c0001t0016 a0001c0001t0017 a0001c0001t0018 a0001c0001t0019 a0001c0002t0002 a0001c0002t0004 a0001c0003t0001 a0001c0003t0003 a0001c0003t0005 a0001c0003t0010 a0001c0004t0001 a0001c0004t0011 a0001c0007t0003 a0001c0011t0007 a0002c0005t0002	a0001c0001t0001g0051 a0001c0001t0001g0052 a0001c0001t0001g0053 others(51): Show a0001c0001t0001g0051 a0001c0001t0001g0052 a0001c0001t0001g0053 a0001c0001t0001g0055 a0001c0001t0001g0057 a0001c0001t0001g0060 a0001c0001t0001g0064 a0001c0001t0001g0066 a0001c0001t0001g0067 a0001c0001t0001g0068 a0001c0001t0003g0054 a0001c0001t0003g0056 a0001c0001t0003g0059 a0001c0001t0003g0062 a0001c0001t0003g0065 a0001c0001t0003g0070 a0001c0001t0005g0071 a0001c0001t0006g0061 a0001c0001t0008g0078 a0001c0001t0008g0079 a0001c0001t0012g0058 a0001c0001t0013g0069 a0001c0001t0015g0050 a0001c0001t0016g0080 a0001c0001t0017g0077 a0001c0001t0018g0076 a0001c0001t0019g0075 a0001c0002t0002g0009 a0001c0002t0002g0011 a0001c0002t0002g0013 a0001c0002t0002g0016 a0001c0002t0002g0017 a0001c0002t0002g0018 a0001c0002t0002g0019 a0001c0002t0002g0021 a0001c0002t0002g0023 a0001c0002t0004g0008 a0001c0002t0004g0012 a0001c0002t0004g0020 a0001c0002t0004g0022 a0001c0003t0001g0031 a0001c0003t0001g0034 a0001c0003t0001g0037 a0001c0003t0001g0038 a0001c0003t0003g0046 a0001c0003t0005g0035 a0001c0003t0005g0045 a0001c0003t0010g0025 a0001c0004t0001g0043 a0001c0004t0011g0042 a0001c0007t0003g0028 a0001c0011t0007g0002 a0002c0005t0002g0006 a0002c0005t0002g0007	54	80	0.6750	7	c.313 others(28): Show c.3138+84560_3138+84566dupGTTTTTT	PCDH9	ENSG00000184226.15	transcript	ENST00000377865.7	protein_coding	3/4			chr13	TogoVar
PCDH9_chr13_66297834_67235336	66829717	C C	CAAAAAAA CAAAAAAA	intron_variant intron_variant	MODIFIER	HG01109.hp1 HG01167.hp2 HG01496.hp1 others(5): Show HG01109.hp1 HG01167.hp2 HG01496.hp1 HG02132.hp1 HG02630.hp2 HG03098.hp2 HG06807.hp2 NA18950.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0001c0002 a0001c0003 others(1): Show a0001c0001 a0001c0002 a0001c0003 a0002c0005	a0001c0001t0003 a0001c0001t0015 a0001c0001t0018 others(4): Show a0001c0001t0003 a0001c0001t0015 a0001c0001t0018 a0001c0002t0002 a0001c0003t0003 a0001c0003t0005 a0002c0005t0002	a0001c0001t0003g0059 a0001c0001t0015g0050 a0001c0001t0018g0076 others(5): Show a0001c0001t0003g0059 a0001c0001t0015g0050 a0001c0001t0018g0076 a0001c0002t0002g0021 a0001c0002t0002g0023 a0001c0003t0003g0046 a0001c0003t0005g0045 a0002c0005t0002g0007	8	80	0.1000	7	c.313 others(28): Show c.3138+73780_3138+73786dupTTTTTTT	PCDH9	ENSG00000184226.15	transcript	ENST00000377865.7	protein_coding	3/4			chr13	TogoVar
PCDH9_chr13_66297834_67235336	67152722	T T	TTGATTCA TTGATTCA	intron_variant intron_variant	MODIFIER	HG00099.hp1 HG01175.hp1 HG02145.hp2 others(7): Show HG00099.hp1 HG01175.hp1 HG02145.hp2 HG03041.hp1 HG03209.hp2 HG04204.hp2 HG06807.hp2 NA18906.hp2 NA18950.hp2 NA19060.hp1	a0001 a0002 a0003 a0001 a0002 a0003	a0001c0001 a0001c0002 a0001c0003 others(3): Show a0001c0001 a0001c0002 a0001c0003 a0001c0011 a0002c0005 a0003c0010	a0001c0001t0001 a0001c0001t0019 a0001c0002t0002 others(6): Show a0001c0001t0001 a0001c0001t0019 a0001c0002t0002 a0001c0002t0003 a0001c0002t0004 a0001c0003t0014 a0001c0011t0007 a0002c0005t0002 a0003c0010t0007	a0001c0001t0001g0051 a0001c0001t0001g0052 a0001c0001t0019g0075 others(7): Show a0001c0001t0001g0051 a0001c0001t0001g0052 a0001c0001t0019g0075 a0001c0002t0002g0009 a0001c0002t0003g0047 a0001c0002t0004g0008 a0001c0003t0014g0033 a0001c0011t0007g0002 a0002c0005t0002g0007 a0003c0010t0007g0001	10	80	0.1250	7	c.303 others(28): Show c.3036+72676_3036+72682dupTGAATCA	PCDH9	ENSG00000184226.15	transcript	ENST00000377865.7	protein_coding	2/4			chr13	TogoVar
PCDHA10_chr5_140850897_141017347	140943140	C C	CCCAGCTA CCCAGCTA	intron_variant intron_variant	MODIFIER	HG02109.hp1 HG02965.hp1 HG03130.hp2 HG02109.hp1 HG02965.hp1 HG03130.hp2	a0002 a0003 a0002 a0003	a0002c0002 a0003c0003 a0002c0002 a0003c0003	a0002c0002t0005 a0003c0003t0005 a0002c0002t0005 a0003c0003t0005	a0002c0002t0005g0253 a0003c0003t0005g0044 a0003c0003t0005g0045 a0002c0002t0005g0253 a0003c0003t0005g0044 a0003c0003t0005g0045	3	260	0.0115	7	c.238 others(28): Show c.2389-35807_2389-35801dupCAGCTAC	PCDHA10	ENSG00000250120.8	transcript	ENST00000307360.6	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA11_chr5_140863957_141017347	140943140	C C	CCCAGCTA CCCAGCTA	intron_variant intron_variant	MODIFIER	HG02109.hp1 HG02965.hp2 HG03130.hp1 HG02109.hp1 HG02965.hp2 HG03130.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0005 a0001c0001t0005	a0001c0001t0005g0109 a0001c0001t0005g0110 a0001c0001t0005g0111 a0001c0001t0005g0109 a0001c0001t0005g0110 a0001c0001t0005g0111	3	260	0.0115	7	c.239 others(28): Show c.2392-35807_2392-35801dupCAGCTAC	PCDHA11	ENSG00000249158.7	transcript	ENST00000398640.7	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA12_chr5_140870308_141017347	140943140	C C	CCCAGCTA CCCAGCTA	intron_variant intron_variant	MODIFIER	HG02109.hp1 HG02965.hp2 HG03130.hp1 HG02109.hp1 HG02965.hp2 HG03130.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0005 a0001c0001t0005	a0001c0001t0005g0115 a0001c0001t0005g0116 a0001c0001t0005g0117 a0001c0001t0005g0115 a0001c0001t0005g0116 a0001c0001t0005g0117	3	260	0.0115	7	c.236 others(28): Show c.2368-35807_2368-35801dupCAGCTAC	PCDHA12	ENSG00000251664.5	transcript	ENST00000398631.3	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA13_chr5_140877124_141017347	140943140	C C	CCCAGCTA CCCAGCTA	intron_variant intron_variant	MODIFIER	HG02109.hp1 HG02965.hp2 HG03130.hp1 HG02109.hp1 HG02965.hp2 HG03130.hp1	a0001 a0001	a0001c0005 a0001c0005	a0001c0005t0006 a0001c0005t0006	a0001c0005t0006g0258 a0001c0005t0006g0259 a0001c0005t0006g0260 a0001c0005t0006g0258 a0001c0005t0006g0259 a0001c0005t0006g0260	3	260	0.0115	7	c.239 others(28): Show c.2395-35807_2395-35801dupCAGCTAC	PCDHA13	ENSG00000239389.8	transcript	ENST00000289272.3	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA2_chr5_140789852_141017347	140943140	C C	CCCAGCTA CCCAGCTA	intron_variant intron_variant	MODIFIER	HG02109.hp1 HG02965.hp1 HG03130.hp2 HG02109.hp1 HG02965.hp1 HG03130.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0005 a0002c0002t0005	a0002c0002t0005g0159 a0002c0002t0005g0179 a0002c0002t0005g0180 a0002c0002t0005g0159 a0002c0002t0005g0179 a0002c0002t0005g0180	3	202	0.0149	7	c.238 others(28): Show c.2389-35807_2389-35801dupCAGCTAC	PCDHA2	ENSG00000204969.7	transcript	ENST00000526136.2	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA3_chr5_140796057_141017347	140943140	C C	CCCAGCTA CCCAGCTA	intron_variant intron_variant	MODIFIER	HG02109.hp1 HG02965.hp1 HG03130.hp2 HG02109.hp1 HG02965.hp1 HG03130.hp2	a0002 a0002	a0002c0002 a0002c0002	a0002c0002t0009 a0002c0002t0009	a0002c0002t0009g0156 a0002c0002t0009g0180 a0002c0002t0009g0181 a0002c0002t0009g0156 a0002c0002t0009g0180 a0002c0002t0009g0181	3	208	0.0144	7	c.239 others(28): Show c.2395-35807_2395-35801dupCAGCTAC	PCDHA3	ENSG00000255408.4	transcript	ENST00000522353.3	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA4_chr5_140802068_141017347	140943140	C C	CCCAGCTA CCCAGCTA	intron_variant intron_variant	MODIFIER	HG02109.hp1 HG02965.hp1 HG03130.hp2 HG02109.hp1 HG02965.hp1 HG03130.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0007 a0001c0001t0007	a0001c0001t0007g0163 a0001c0001t0007g0191 a0001c0001t0007g0192 a0001c0001t0007g0163 a0001c0001t0007g0191 a0001c0001t0007g0192	3	212	0.0142	7	c.238 others(28): Show c.2386-35807_2386-35801dupCAGCTAC	PCDHA4	ENSG00000204967.13	transcript	ENST00000530339.2	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA5_chr5_140816613_141017347	140943140	C C	CCCAGCTA CCCAGCTA	intron_variant intron_variant	MODIFIER	HG02109.hp2 HG02965.hp2 HG03130.hp2 HG02109.hp2 HG02965.hp2 HG03130.hp2	a0002 a0004 a0002 a0004	a0002c0002 a0004c0008 a0002c0002 a0004c0008	a0002c0002t0007 a0004c0008t0007 a0002c0002t0007 a0004c0008t0007	a0002c0002t0007g0067 a0004c0008t0007g0098 a0004c0008t0007g0102 a0002c0002t0007g0067 a0004c0008t0007g0098 a0004c0008t0007g0102	3	220	0.0136	7	c.235 others(28): Show c.2353-35807_2353-35801dupCAGCTAC	PCDHA5	ENSG00000204965.9	transcript	ENST00000529859.2	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA6_chr5_140822960_141017347	140943140	C C	CCCAGCTA CCCAGCTA	intron_variant intron_variant	MODIFIER	HG02109.hp2 HG02965.hp2 HG03130.hp1 HG02109.hp2 HG02965.hp2 HG03130.hp1	a0001 a0007 a0001 a0007	a0001c0002 a0007c0012 a0001c0002 a0007c0012	a0001c0002t0005 a0007c0012t0005 a0001c0002t0005 a0007c0012t0005	a0001c0002t0005g0180 a0001c0002t0005g0193 a0007c0012t0005g0179 a0001c0002t0005g0180 a0001c0002t0005g0193 a0007c0012t0005g0179	3	236	0.0127	7	c.239 others(28): Show c.2395-35807_2395-35801dupCAGCTAC	PCDHA6	ENSG00000081842.18	transcript	ENST00000529310.6	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA7_chr5_140829269_141017347	140943140	C C	CCCAGCTA CCCAGCTA	intron_variant intron_variant	MODIFIER	HG02109.hp1 HG02965.hp2 HG03130.hp1 HG02109.hp1 HG02965.hp2 HG03130.hp1	a0001 a0001	a0001c0002 a0001c0002	a0001c0002t0005 a0001c0002t0005	a0001c0002t0005g0180 a0001c0002t0005g0181 a0001c0002t0005g0200 a0001c0002t0005g0180 a0001c0002t0005g0181 a0001c0002t0005g0200	3	248	0.0121	7	c.235 others(28): Show c.2356-35807_2356-35801dupCAGCTAC	PCDHA7	ENSG00000204963.6	transcript	ENST00000525929.2	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA8_chr5_140836187_141017347	140943140	C C	CCCAGCTA CCCAGCTA	intron_variant intron_variant	MODIFIER	HG02109.hp1 HG02965.hp2 HG03130.hp1 HG02109.hp1 HG02965.hp2 HG03130.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0007 a0001c0001t0007	a0001c0001t0007g0122 a0001c0001t0007g0123 a0001c0001t0007g0124 a0001c0001t0007g0122 a0001c0001t0007g0123 a0001c0001t0007g0124	3	258	0.0116	7	c.239 others(28): Show c.2395-35807_2395-35801dupCAGCTAC	PCDHA8	ENSG00000204962.6	transcript	ENST00000531613.2	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHA9_chr5_140843382_141017347	140943140	C C	CCCAGCTA CCCAGCTA	intron_variant intron_variant	MODIFIER	HG02109.hp1 HG02965.hp1 HG03130.hp1 HG02109.hp1 HG02965.hp1 HG03130.hp1	a0003 a0003	a0003c0004 a0003c0004	a0003c0004t0009 a0003c0004t0009	a0003c0004t0009g0052 a0003c0004t0009g0132 a0003c0004t0009g0133 a0003c0004t0009g0052 a0003c0004t0009g0132 a0003c0004t0009g0133	3	256	0.0117	7	c.239 others(28): Show c.2395-35807_2395-35801dupCAGCTAC	PCDHA9	ENSG00000204961.7	transcript	ENST00000532602.2	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHAC1_chr5_140921299_141017347	140943140	C C	CCCAGCTA CCCAGCTA	intron_variant intron_variant	MODIFIER	HG02109.hp1 HG02965.hp2 HG03130.hp2 HG02109.hp1 HG02965.hp2 HG03130.hp2	a0001 a0001	a0001c0003 a0001c0003	a0001c0003t0007 a0001c0003t0007	a0001c0003t0007g0228 a0001c0003t0007g0229 a0001c0003t0007g0230 a0001c0003t0007g0228 a0001c0003t0007g0229 a0001c0003t0007g0230	3	280	0.0107	7	c.243 others(28): Show c.2433+13817_2433+13823dupCAGCTAC	PCDHAC1	ENSG00000248383.5	transcript	ENST00000253807.3	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHGA10_chr5_141407987_141517975	141410849	C C	CTTTTTTT CTTTTTTT	upstream_gene_variant upstream_gene_variant	MODIFIER	HG00438.hp1 HG00609.hp1 HG00621.hp2 others(25): Show HG00438.hp1 HG00609.hp1 HG00621.hp2 HG00673.hp2 HG01070.hp1 HG01243.hp1 HG02132.hp1 HG02155.hp1 HG02630.hp1 HG02647.hp2 HG02897.hp2 HG03098.hp2 HG03195.hp2 NA18965.hp1 NA18966.hp2 NA18969.hp1 NA18970.hp1 NA18980.hp2 NA18990.hp2 NA19003.hp1 NA19005.hp1 NA19012.hp1 NA19057.hp1 NA19058.hp1 NA19060.hp2 NA19066.hp1 NA19085.hp1 NA19091.hp2	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(2): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0006 a0001c0001t0013	a0001c0001t0001g0057 a0001c0001t0001g0066 a0001c0001t0001g0089 others(25): Show a0001c0001t0001g0057 a0001c0001t0001g0066 a0001c0001t0001g0089 a0001c0001t0001g0171 a0001c0001t0002g0044 a0001c0001t0002g0048 a0001c0001t0002g0067 a0001c0001t0003g0033 a0001c0001t0003g0034 a0001c0001t0003g0040 a0001c0001t0003g0049 a0001c0001t0003g0051 a0001c0001t0003g0052 a0001c0001t0003g0053 a0001c0001t0003g0055 a0001c0001t0003g0058 a0001c0001t0003g0060 a0001c0001t0003g0061 a0001c0001t0003g0062 a0001c0001t0003g0063 a0001c0001t0006g0031 a0001c0001t0006g0032 a0001c0001t0006g0043 a0001c0001t0006g0045 a0001c0001t0006g0046 a0001c0001t0006g0047 a0001c0001t0006g0073 a0001c0001t0013g0054	28	306	0.0915	7	c.-23 others(18): Show c.-2327_-2326insTTTTTTT	PCDHGA10	ENSG00000253846.3	transcript	ENST00000398610.3	protein_coding		2137		chr5	TogoVar
PCDHGA10_chr5_141407987_141517975	141502866	C C	CTTTTTTT CTTTTTTT	intron_variant intron_variant	MODIFIER	HG01243.hp2 HG02145.hp2 HG02258.hp2 others(14): Show HG01243.hp2 HG02145.hp2 HG02258.hp2 HG02572.hp1 HG02622.hp1 HG02622.hp2 HG02647.hp1 HG02818.hp1 HG02818.hp2 HG02922.hp2 HG02976.hp1 HG03130.hp1 HG03195.hp1 HG03209.hp2 HG03453.hp1 HG03490.hp2 NA18906.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0001c0018 a0002c0002 a0001c0001 a0001c0018 a0002c0002	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(3): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0018t0001 a0002c0002t0001 a0002c0002t0002	a0001c0001t0001g0068 a0001c0001t0001g0076 a0001c0001t0001g0084 others(14): Show a0001c0001t0001g0068 a0001c0001t0001g0076 a0001c0001t0001g0084 a0001c0001t0001g0085 a0001c0001t0001g0093 a0001c0001t0001g0094 a0001c0001t0001g0096 a0001c0001t0001g0187 a0001c0001t0001g0204 a0001c0001t0002g0004 a0001c0001t0003g0082 a0001c0018t0001g0121 a0002c0002t0001g0220 a0002c0002t0001g0254 a0002c0002t0001g0264 a0002c0002t0001g0265 a0002c0002t0002g0278	17	306	0.0556	7	c.249 others(26): Show c.2496-2519_2496-2513dupTTTTTTT	PCDHGA10	ENSG00000253846.3	transcript	ENST00000398610.3	protein_coding	2/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHGA11_chr5_141416051_141517975	141502866	C C	CTTTTTTT CTTTTTTT	intron_variant intron_variant	MODIFIER	HG01243.hp1 HG02145.hp2 HG02258.hp1 others(14): Show HG01243.hp1 HG02145.hp2 HG02258.hp1 HG02572.hp2 HG02622.hp1 HG02622.hp2 HG02647.hp2 HG02818.hp1 HG02818.hp2 HG02922.hp2 HG02976.hp2 HG03130.hp2 HG03195.hp2 HG03209.hp1 HG03453.hp1 HG03490.hp2 NA18906.hp1	a0001 a0003 a0001 a0003	a0001c0001 a0001c0003 a0001c0004 others(2): Show a0001c0001 a0001c0003 a0001c0004 a0001c0014 a0003c0005	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(5): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0008 a0001c0003t0004 a0001c0004t0001 a0001c0014t0004 a0003c0005t0001	a0001c0001t0001g0132 a0001c0001t0001g0169 a0001c0001t0001g0171 others(14): Show a0001c0001t0001g0132 a0001c0001t0001g0169 a0001c0001t0001g0171 a0001c0001t0001g0193 a0001c0001t0001g0197 a0001c0001t0001g0198 a0001c0001t0001g0227 a0001c0001t0002g0136 a0001c0001t0003g0254 a0001c0001t0008g0076 a0001c0003t0004g0064 a0001c0003t0004g0066 a0001c0003t0004g0068 a0001c0004t0001g0092 a0001c0014t0004g0069 a0003c0005t0001g0139 a0003c0005t0001g0149	17	310	0.0548	7	c.249 others(26): Show c.2493-2519_2493-2513dupTTTTTTT	PCDHGA11	ENSG00000253873.6	transcript	ENST00000398587.7	protein_coding	2/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHGA12_chr5_141425507_141517975	141502866	C C	CTTTTTTT CTTTTTTT	intron_variant intron_variant	MODIFIER	HG01243.hp1 HG02145.hp2 HG02258.hp2 others(14): Show HG01243.hp1 HG02145.hp2 HG02258.hp2 HG02572.hp2 HG02622.hp1 HG02622.hp2 HG02647.hp1 HG02818.hp1 HG02818.hp2 HG02922.hp2 HG02976.hp1 HG03130.hp1 HG03195.hp2 HG03209.hp2 HG03453.hp2 HG03490.hp1 NA18906.hp1	a0001 a0002 a0004 others(1): Show a0001 a0002 a0004 a0007	a0001c0001 a0001c0020 a0002c0003 others(2): Show a0001c0001 a0001c0020 a0002c0003 a0004c0009 a0007c0022	a0001c0001t0001 a0001c0001t0002 a0001c0020t0001 others(4): Show a0001c0001t0001 a0001c0001t0002 a0001c0020t0001 a0002c0003t0001 a0002c0003t0003 a0004c0009t0002 a0007c0022t0001	a0001c0001t0001g0015 a0001c0001t0001g0031 a0001c0001t0001g0047 others(14): Show a0001c0001t0001g0015 a0001c0001t0001g0031 a0001c0001t0001g0047 a0001c0001t0001g0105 a0001c0001t0001g0113 a0001c0001t0001g0114 a0001c0001t0001g0158 a0001c0001t0001g0160 a0001c0001t0001g0162 a0001c0001t0001g0228 a0001c0001t0002g0229 a0001c0020t0001g0048 a0002c0003t0001g0010 a0002c0003t0001g0029 a0002c0003t0003g0058 a0004c0009t0002g0043 a0007c0022t0001g0166	17	318	0.0535	7	c.248 others(26): Show c.2484-2519_2484-2513dupTTTTTTT	PCDHGA12	ENSG00000253159.3	transcript	ENST00000252085.4	protein_coding	2/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHGA1_chr5_141325514_141517975	141379889	C C	CTTTTTTT CTTTTTTT	intron_variant intron_variant	MODIFIER	HG01175.hp1 HG01517.hp1 HG01884.hp1 others(3): Show HG01175.hp1 HG01517.hp1 HG01884.hp1 HG02109.hp1 HG02486.hp2 HG02809.hp1	a0001 a0002 a0003 a0001 a0002 a0003	a0001c0001 a0002c0003 a0003c0004 a0001c0001 a0002c0003 a0003c0004	a0001c0001t0001 a0001c0001t0002 a0002c0003t0001 others(1): Show a0001c0001t0001 a0001c0001t0002 a0002c0003t0001 a0003c0004t0001	a0001c0001t0001g0002 a0001c0001t0001g0179 a0001c0001t0002g0072 others(3): Show a0001c0001t0001g0002 a0001c0001t0001g0179 a0001c0001t0002g0072 a0002c0003t0001g0200 a0002c0003t0001g0204 a0003c0004t0001g0248	6	268	0.0224	7	c.242 others(28): Show c.2421+46808_2421+46814dupTTTTTTT	PCDHGA1	ENSG00000204956.6	transcript	ENST00000517417.3	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHGA1_chr5_141325514_141517975	141410849	C C	CTTTTTTT CTTTTTTT	intron_variant intron_variant	MODIFIER	HG00438.hp2 HG00609.hp2 HG00621.hp1 others(22): Show HG00438.hp2 HG00609.hp2 HG00621.hp1 HG00673.hp1 HG01070.hp1 HG01978.hp2 HG02132.hp2 HG02155.hp1 HG02630.hp2 HG02647.hp2 HG02897.hp1 HG03098.hp1 HG03195.hp2 NA18965.hp1 NA18966.hp1 NA18969.hp2 NA18970.hp2 NA18990.hp1 NA19005.hp1 NA19012.hp2 NA19057.hp2 NA19058.hp2 NA19060.hp2 NA19066.hp1 NA19091.hp1	a0001 a0002 a0007 others(1): Show a0001 a0002 a0007 a0013	a0001c0001 a0001c0002 a0002c0003 others(2): Show a0001c0001 a0001c0002 a0002c0003 a0007c0010 a0013c0020	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(9): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0002t0001 a0001c0002t0003 a0002c0003t0001 a0002c0003t0002 a0002c0003t0003 a0002c0003t0006 a0002c0003t0013 a0007c0010t0006 a0013c0020t0001	a0001c0001t0001g0097 a0001c0001t0002g0117 a0001c0001t0002g0118 others(22): Show a0001c0001t0001g0097 a0001c0001t0002g0117 a0001c0001t0002g0118 a0001c0001t0003g0017 a0001c0001t0003g0100 a0001c0001t0003g0163 a0001c0002t0001g0041 a0001c0002t0003g0042 a0002c0003t0001g0201 a0002c0003t0002g0193 a0002c0003t0003g0190 a0002c0003t0003g0192 a0002c0003t0003g0196 a0002c0003t0003g0198 a0002c0003t0003g0203 a0002c0003t0003g0205 a0002c0003t0003g0206 a0002c0003t0006g0185 a0002c0003t0006g0186 a0002c0003t0006g0188 a0002c0003t0013g0199 a0007c0010t0006g0183 a0007c0010t0006g0184 a0007c0010t0006g0189 a0013c0020t0001g0044	25	268	0.0933	7	c.242 others(28): Show c.2421+77760_2421+77766dupTTTTTTT	PCDHGA1	ENSG00000204956.6	transcript	ENST00000517417.3	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHGA1_chr5_141325514_141517975	141502866	C C	CTTTTTTT CTTTTTTT	intron_variant intron_variant	MODIFIER	HG02145.hp1 HG02258.hp1 HG02572.hp2 others(13): Show HG02145.hp1 HG02258.hp1 HG02572.hp2 HG02622.hp1 HG02622.hp2 HG02647.hp1 HG02818.hp1 HG02818.hp2 HG02922.hp2 HG02976.hp1 HG03130.hp1 HG03195.hp1 HG03209.hp2 HG03453.hp1 HG03490.hp1 NA18906.hp1	a0001 a0003 a0005 others(1): Show a0001 a0003 a0005 a0012	a0001c0001 a0001c0002 a0003c0004 others(3): Show a0001c0001 a0001c0002 a0003c0004 a0003c0019 a0005c0006 a0012c0013	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(5): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0002t0001 a0003c0004t0001 a0003c0019t0001 a0005c0006t0001 a0012c0013t0001	a0001c0001t0001g0008 a0001c0001t0001g0077 a0001c0001t0001g0078 others(13): Show a0001c0001t0001g0008 a0001c0001t0001g0077 a0001c0001t0001g0078 a0001c0001t0001g0080 a0001c0001t0001g0081 a0001c0001t0002g0071 a0001c0001t0002g0152 a0001c0001t0003g0004 a0001c0002t0001g0216 a0001c0002t0001g0261 a0001c0002t0001g0262 a0003c0004t0001g0247 a0003c0004t0001g0255 a0003c0019t0001g0246 a0005c0006t0001g0171 a0012c0013t0001g0257	16	268	0.0597	7	c.248 others(26): Show c.2481-2519_2481-2513dupTTTTTTT	PCDHGA1	ENSG00000204956.6	transcript	ENST00000517417.3	protein_coding	2/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHGA2_chr5_141333760_141517975	141379889	C C	CTTTTTTT CTTTTTTT	intron_variant intron_variant	MODIFIER	HG01175.hp2 HG01517.hp2 HG01884.hp1 others(3): Show HG01175.hp2 HG01517.hp2 HG01884.hp1 HG02109.hp1 HG02486.hp2 HG02809.hp1	a0001 a0001	a0001c0001 a0001c0001	a0001c0001t0001 a0001c0001t0002 a0001c0001t0001 a0001c0001t0002	a0001c0001t0001g0018 a0001c0001t0001g0054 a0001c0001t0001g0093 others(3): Show a0001c0001t0001g0018 a0001c0001t0001g0054 a0001c0001t0001g0093 a0001c0001t0001g0098 a0001c0001t0001g0128 a0001c0001t0002g0012	6	272	0.0221	7	c.242 others(28): Show c.2424+38518_2424+38524dupTTTTTTT	PCDHGA2	ENSG00000081853.15	transcript	ENST00000394576.3	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHGA2_chr5_141333760_141517975	141410849	C C	CTTTTTTT CTTTTTTT	intron_variant intron_variant	MODIFIER	HG00438.hp1 HG00609.hp2 HG00621.hp2 others(22): Show HG00438.hp1 HG00609.hp2 HG00621.hp2 HG00673.hp1 HG01070.hp1 HG01978.hp1 HG02132.hp2 HG02155.hp2 HG02630.hp1 HG02647.hp1 HG02897.hp2 HG03098.hp2 HG03195.hp1 NA18965.hp1 NA18966.hp1 NA18969.hp2 NA18970.hp1 NA18990.hp1 NA19005.hp1 NA19012.hp2 NA19057.hp1 NA19058.hp2 NA19060.hp2 NA19066.hp1 NA19091.hp2	a0001 a0002 a0001 a0002	a0001c0001 a0002c0002 a0001c0001 a0002c0002	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(4): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0006 a0001c0001t0012 a0002c0002t0002 a0002c0002t0003	a0001c0001t0001g0095 a0001c0001t0001g0102 a0001c0001t0001g0138 others(22): Show a0001c0001t0001g0095 a0001c0001t0001g0102 a0001c0001t0001g0138 a0001c0001t0001g0190 a0001c0001t0002g0078 a0001c0001t0003g0066 a0001c0001t0003g0077 a0001c0001t0003g0083 a0001c0001t0003g0089 a0001c0001t0003g0091 a0001c0001t0003g0097 a0001c0001t0003g0099 a0001c0001t0003g0100 a0001c0001t0003g0105 a0001c0001t0003g0140 a0001c0001t0006g0059 a0001c0001t0006g0060 a0001c0001t0006g0061 a0001c0001t0006g0062 a0001c0001t0006g0064 a0001c0001t0006g0065 a0001c0001t0012g0092 a0002c0002t0002g0194 a0002c0002t0002g0195 a0002c0002t0003g0254	25	272	0.0919	7	c.242 others(28): Show c.2424+69470_2424+69476dupTTTTTTT	PCDHGA2	ENSG00000081853.15	transcript	ENST00000394576.3	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHGA2_chr5_141333760_141517975	141502866	C C	CTTTTTTT CTTTTTTT	intron_variant intron_variant	MODIFIER	HG02145.hp2 HG02258.hp2 HG02572.hp2 others(13): Show HG02145.hp2 HG02258.hp2 HG02572.hp2 HG02622.hp1 HG02622.hp2 HG02647.hp2 HG02818.hp1 HG02818.hp2 HG02922.hp2 HG02976.hp2 HG03130.hp1 HG03195.hp2 HG03209.hp2 HG03453.hp2 HG03490.hp2 NA18906.hp2	a0001 a0002 a0003 others(2): Show a0001 a0002 a0003 a0004 a0012	a0001c0001 a0001c0006 a0001c0019 others(4): Show a0001c0001 a0001c0006 a0001c0019 a0002c0002 a0003c0003 a0004c0005 a0012c0016	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(6): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0006t0001 a0001c0019t0001 a0002c0002t0002 a0003c0003t0001 a0004c0005t0001 a0012c0016t0001	a0001c0001t0001g0072 a0001c0001t0001g0112 a0001c0001t0001g0116 others(13): Show a0001c0001t0001g0072 a0001c0001t0001g0112 a0001c0001t0001g0116 a0001c0001t0001g0127 a0001c0001t0002g0011 a0001c0001t0003g0056 a0001c0006t0001g0262 a0001c0006t0001g0263 a0001c0006t0001g0265 a0001c0006t0001g0266 a0001c0019t0001g0126 a0002c0002t0002g0239 a0003c0003t0001g0109 a0003c0003t0001g0148 a0004c0005t0001g0020 a0012c0016t0001g0131	16	272	0.0588	7	c.248 others(26): Show c.2484-2519_2484-2513dupTTTTTTT	PCDHGA2	ENSG00000081853.15	transcript	ENST00000394576.3	protein_coding	2/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHGA3_chr5_141338829_141517975	141379889	C C	CTTTTTTT CTTTTTTT	intron_variant intron_variant	MODIFIER	HG01175.hp2 HG01517.hp2 HG01884.hp1 others(3): Show HG01175.hp2 HG01517.hp2 HG01884.hp1 HG02109.hp1 HG02486.hp1 HG02809.hp1	a0001 a0003 a0001 a0003	a0001c0001 a0003c0003 a0001c0001 a0003c0003	a0001c0001t0001 a0001c0001t0002 a0003c0003t0001 a0001c0001t0001 a0001c0001t0002 a0003c0003t0001	a0001c0001t0001g0206 a0001c0001t0001g0207 a0001c0001t0001g0232 others(3): Show a0001c0001t0001g0206 a0001c0001t0001g0207 a0001c0001t0001g0232 a0001c0001t0002g0162 a0003c0003t0001g0033 a0003c0003t0001g0047	6	270	0.0222	7	c.242 others(28): Show c.2424+33456_2424+33462dupTTTTTTT	PCDHGA3	ENSG00000254245.3	transcript	ENST00000253812.8	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHGA3_chr5_141338829_141517975	141410849	C C	CTTTTTTT CTTTTTTT	intron_variant intron_variant	MODIFIER	HG00438.hp1 HG00609.hp1 HG00621.hp2 others(23): Show HG00438.hp1 HG00609.hp1 HG00621.hp2 HG00673.hp2 HG01070.hp2 HG01978.hp1 HG02132.hp1 HG02155.hp2 HG02630.hp1 HG02647.hp2 HG02897.hp2 HG03098.hp2 HG03195.hp1 NA18965.hp2 NA18966.hp1 NA18969.hp2 NA18970.hp1 NA18990.hp1 NA19005.hp2 NA19012.hp2 NA19057.hp2 NA19058.hp1 NA19060.hp2 NA19066.hp2 NA19085.hp2 NA19091.hp2	a0001 a0003 a0004 others(1): Show a0001 a0003 a0004 a0005	a0001c0001 a0003c0003 a0004c0004 others(1): Show a0001c0001 a0003c0003 a0004c0004 a0005c0006	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(6): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0012 a0003c0003t0001 a0004c0004t0002 a0004c0004t0003 a0004c0004t0006 a0005c0006t0001	a0001c0001t0001g0222 a0001c0001t0001g0258 a0001c0001t0002g0131 others(23): Show a0001c0001t0001g0222 a0001c0001t0001g0258 a0001c0001t0002g0131 a0001c0001t0003g0130 a0001c0001t0003g0156 a0001c0001t0003g0192 a0001c0001t0003g0200 a0001c0001t0003g0201 a0001c0001t0003g0219 a0001c0001t0003g0224 a0001c0001t0003g0246 a0001c0001t0003g0247 a0001c0001t0012g0205 a0003c0003t0001g0013 a0004c0004t0002g0172 a0004c0004t0002g0173 a0004c0004t0003g0027 a0004c0004t0003g0166 a0004c0004t0003g0221 a0004c0004t0006g0153 a0004c0004t0006g0174 a0004c0004t0006g0175 a0004c0004t0006g0176 a0004c0004t0006g0197 a0004c0004t0006g0198 a0005c0006t0001g0164	26	270	0.0963	7	c.242 others(28): Show c.2424+64408_2424+64414dupTTTTTTT	PCDHGA3	ENSG00000254245.3	transcript	ENST00000253812.8	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHGA3_chr5_141338829_141517975	141502866	C C	CTTTTTTT CTTTTTTT	intron_variant intron_variant	MODIFIER	HG02145.hp2 HG02258.hp2 HG02572.hp1 others(13): Show HG02145.hp2 HG02258.hp2 HG02572.hp1 HG02622.hp1 HG02622.hp2 HG02647.hp1 HG02818.hp1 HG02818.hp2 HG02922.hp2 HG02976.hp2 HG03130.hp1 HG03195.hp2 HG03209.hp1 HG03453.hp1 HG03490.hp1 NA18906.hp2	a0001 a0002 a0003 others(1): Show a0001 a0002 a0003 a0013	a0001c0001 a0002c0002 a0003c0003 others(4): Show a0001c0001 a0002c0002 a0003c0003 a0003c0007 a0003c0009 a0003c0017 a0013c0018	a0001c0001t0001 a0001c0001t0002 a0002c0002t0001 others(7): Show a0001c0001t0001 a0001c0001t0002 a0002c0002t0001 a0002c0002t0002 a0002c0002t0007 a0003c0003t0001 a0003c0007t0003 a0003c0009t0001 a0003c0017t0001 a0013c0018t0001	a0001c0001t0001g0185 a0001c0001t0001g0209 a0001c0001t0002g0161 others(13): Show a0001c0001t0001g0185 a0001c0001t0001g0209 a0001c0001t0002g0161 a0002c0002t0001g0128 a0002c0002t0002g0115 a0002c0002t0007g0075 a0002c0002t0007g0076 a0002c0002t0007g0119 a0002c0002t0007g0139 a0003c0003t0001g0028 a0003c0003t0001g0035 a0003c0003t0001g0046 a0003c0007t0003g0009 a0003c0009t0001g0141 a0003c0017t0001g0045 a0013c0018t0001g0235	16	270	0.0593	7	c.248 others(26): Show c.2484-2519_2484-2513dupTTTTTTT	PCDHGA3	ENSG00000254245.3	transcript	ENST00000253812.8	protein_coding	2/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHGA4_chr5_141350021_141517975	141379889	C C	CTTTTTTT CTTTTTTT	intron_variant intron_variant	MODIFIER	HG01175.hp2 HG01517.hp2 HG01884.hp2 others(2): Show HG01175.hp2 HG01517.hp2 HG01884.hp2 HG02109.hp2 HG02486.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0002c0002 a0001c0001 a0002c0002	a0001c0001t0001 a0001c0001t0002 a0002c0002t0001 a0001c0001t0001 a0001c0001t0002 a0002c0002t0001	a0001c0001t0001g0099 a0001c0001t0001g0100 a0001c0001t0002g0098 others(2): Show a0001c0001t0001g0099 a0001c0001t0001g0100 a0001c0001t0002g0098 a0002c0002t0001g0233 a0002c0002t0001g0248	5	274	0.0183	7	c.251 others(28): Show c.2514+22292_2514+22298dupTTTTTTT	PCDHGA4	ENSG00000262576.3	transcript	ENST00000571252.3	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr5	TogoVar
PCDHGA4_chr5_141350021_141517975	141410849	C C	CTTTTTTT CTTTTTTT	intron_variant intron_variant	MODIFIER	HG00438.hp1 HG00609.hp1 HG00621.hp1 others(24): Show HG00438.hp1 HG00609.hp1 HG00621.hp1 HG00673.hp1 HG01070.hp1 HG01243.hp1 HG01978.hp2 HG02132.hp1 HG02155.hp1 HG02630.hp1 HG02647.hp2 HG02897.hp2 HG03098.hp2 HG03195.hp1 NA18965.hp2 NA18966.hp2 NA18969.hp2 NA18970.hp2 NA18990.hp2 NA19005.hp2 NA19012.hp1 NA19057.hp1 NA19058.hp2 NA19060.hp1 NA19066.hp1 NA19085.hp1 NA19091.hp1	a0001 a0002 a0001 a0002	a0001c0001 a0002c0002 a0002c0007 a0001c0001 a0002c0002 a0002c0007	a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 others(4): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0003 a0001c0001t0006 a0001c0001t0012 a0002c0002t0001 a0002c0007t0001	a0001c0001t0001g0178 a0001c0001t0001g0185 a0001c0001t0002g0176 others(24): Show a0001c0001t0001g0178 a0001c0001t0001g0185 a0001c0001t0002g0176 a0001c0001t0002g0177 a0001c0001t0002g0201 a0001c0001t0003g0175 a0001c0001t0003g0181 a0001c0001t0003g0184 a0001c0001t0003g0188 a0001c0001t0003g0189 a0001c0001t0003g0192 a0001c0001t0003g0199 a0001c0001t0003g0202 a0001c0001t0003g0205 a0001c0001t0003g0214 a0001c0001t0003g0216 a0001c0001t0003g0217 a0001c0001t0003g0218 a0001c0001t0006g0179 a0001c0001t0006g0180 a0001c0001t0006g0190 a0001c0001t0006g0193 a0001c0001t0006g0194 a0001c0001t0006g0195 a0001c0001t0012g0187 a0002c0002t0001g0251 a0002c0007t0001g0221	27	274	0.0985	7	c.251 others(28): Show c.2514+53244_2514+53250dupTTTTTTT	PCDHGA4	ENSG00000262576.3	transcript	ENST00000571252.3	protein_coding	1/3		INFO_REALIGN_3_PRIME	chr5	TogoVar

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