view | regionname | pos | ref | alt | annotation | impact | samples | ahapids | chapids | thapids | thapids | ac | an | af | len | hgvs_c | hgvs_p | genename | geneid | featuretype | featureid | transcript_biotype | rank | cdna cdna pos length
|
cds cds pos length
|
aa aa pos length
|
distance | status | chr | external |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
KCTD8_chr4_44168903_44453809 | 44179714 | T | TAGGGATC others(792): Show |
intron_variant | MODIFIER | HG02056.hp1 NA18942.hp2 NA18949.hp2 others(1): Show |
a0001 | a0001c0001 | a0001c0001t0001 | a0001c0001t0001g0096 a0001c0001t0001g0151 a0001c0001t0001g0190 others(1): Show |
4 | 291 | 0.0137 | 799 | c.962 others(816): Show |
KCTD8 | ENSG00000183783.7 | transcript | ENST00000360029.4 | protein_coding | 1/1 | chr4 | TogoVar | |||||||
KIF25_chr6_167992671_168050091 | 167997284 | G | GGGGGCGG others(792): Show |
upstream_gene_variant | MODIFIER | NA19072.hp1 | a0001 | a0001c0001 | a0001c0001t0001 | a0001c0001t0001g0194 | 1 | 354 | 0.0028 | 799 | c.-21 others(810): Show |
KIF25 | ENSG00000125337.21 | transcript | ENST00000643607.3 | protein_coding | 386 | chr6 | TogoVar | |||||||
LAMA2_chr6_128878138_129521566 | 129385145 | G | GGAAAAAG others(792): Show |
intron_variant | MODIFIER | HG01192.hp1 HG02895.hp2 HG02897.hp1 |
a0002 | a0002c0003a0002c0056 | a0002c0003t0003a0002c0056t0003 | a0002c0003t0003g0038 a0002c0003t0003g0039 a0002c0056t0003g0078 |
3 | 10 | 0.3000 | 799 | c.507 others(818): Show |
LAMA2 | ENSG00000196569.14 | transcript | ENST00000421865.3 | protein_coding | 35/64 | INFO_REALIGN_3_PRIME | chr6 | TogoVar | ||||||
LHPP_chr10_124456823_124619141 | 124471488 | A | ATATATAA others(792): Show |
intron_variant | MODIFIER | HG01167.hp1 | a0001 | a0001c0001 | a0001c0001t0001 | a0001c0001t0001g0015 | 1 | 176 | 0.0057 | 799 | c.125 others(816): Show |
LHPP | ENSG00000107902.14 | transcript | ENST00000368842.10 | protein_coding | 1/6 | INFO_REALIGN_3_PRIME | chr10 | TogoVar | ||||||
LRRC4C_chr11_40109209_41464652 | 41103487 | T | TGTGTCTC others(792): Show |
intron_variant | MODIFIER | HG02717.hp2 | a0001 | a0001c0002 | a0001c0002t0001 | a0001c0002t0001g0010 | 1 | 48 | 0.0208 | 799 | c.-49 others(822): Show |
LRRC4C | ENSG00000148948.8 | transcript | ENST00000528697.6 | protein_coding | 1/6 | chr11 | TogoVar | |||||||
MOCS1_chr6_39899170_39939462 | 39926747 | A | AAGGGGGG others(792): Show |
intron_variant | MODIFIER | HG03516.hp2 | a0003 | a0003c0005 | a0003c0005t0014 | a0003c0005t0014g0265 | 1 | 8 | 0.1250 | 799 | c.250 others(814): Show |
MOCS1 | ENSG00000124615.20 | transcript | ENST00000340692.10 | protein_coding | 2/10 | chr6 | TogoVar | |||||||
NKAIN2_chr6_123798865_124830640 | 124687570 | T | TTCCATAC others(792): Show |
intron_variant | MODIFIER | HG00741.hp1 | a0001 | a0001c0002 | a0001c0002t0003 | a0001c0002t0003g0029 | 1 | 36 | 0.0278 | 799 | c.474 others(818): Show |
NKAIN2 | ENSG00000188580.16 | transcript | ENST00000368417.6 | protein_coding | 4/6 | chr6 | TogoVar | |||||||
NOTCH1_chr9_136489433_136551048 | 136535509 | G | GGTGGGGG others(792): Show |
intron_variant | MODIFIER | HG00423.hp2 NA18995.hp1 |
a0001 | a0001c0001 | a0001c0001t0004a0001c0001t0007 | a0001c0001t0004g0164 a0001c0001t0007g0221 |
2 | 207 | 0.0097 | 799 | c.140 others(816): Show |
NOTCH1 | ENSG00000148400.13 | transcript | ENST00000651671.1 | protein_coding | 2/33 | chr9 | TogoVar | |||||||
NT5C1A_chr1_39646229_39677107 | 39664492 | T | TGTCTCCT others(792): Show |
intron_variant | MODIFIER | HG00280.hp2 | a0001 | a0001c0001 | a0001c0001t0028 | a0001c0001t0028g0200 | 1 | 206 | 0.0049 | 799 | c.433 others(816): Show |
NT5C1A | ENSG00000116981.4 | transcript | ENST00000235628.2 | protein_coding | 3/5 | chr1 | TogoVar | |||||||
NT5C1A_chr1_39646229_39677107 | 39664497 | T | TCCTCTCC others(792): Show |
intron_variant | MODIFIER | HG02027.hp1 | a0001 | a0001c0001 | a0001c0001t0039 | a0001c0001t0039g0016 | 1 | 30 | 0.0333 | 799 | c.433 others(816): Show |
NT5C1A | ENSG00000116981.4 | transcript | ENST00000235628.2 | protein_coding | 3/5 | chr1 | TogoVar | |||||||
PJA2_chr5_109329722_109414974 | 109354123 | G | GATATCTA others(792): Show |
intron_variant | MODIFIER | HG00140.hp2 | a0003 | a0003c0003 | a0003c0003t0002 | a0003c0003t0002g0077 | 1 | 331 | 0.0030 | 799 | c.176 others(818): Show |
PJA2 | ENSG00000198961.10 | transcript | ENST00000361189.7 | protein_coding | 7/9 | chr5 | TogoVar | |||||||
PLXNB2_chr22_50269979_50312646 | 50276402 | G | GCAGGGAG others(792): Show |
intron_variant | MODIFIER | HG02896.hp1 | a0002 | a0002c0013 | a0002c0013t0003 | a0002c0013t0003g0165 | 1 | 133 | 0.0075 | 799 | c.533 others(816): Show |
PLXNB2 | ENSG00000196576.16 | transcript | ENST00000359337.9 | protein_coding | 35/36 | chr22 | TogoVar | |||||||
PRKCZ_chr1_2045411_2190395 | 2123797 | G | GTCACGGC others(792): Show |
intron_variant | MODIFIER | HG04228.hp1 | a0001 | a0001c0003 | a0001c0003t0001 | a0001c0003t0001g0283 | 1 | 163 | 0.0061 | 799 | c.335 others(818): Show |
PRKCZ | ENSG00000067606.17 | transcript | ENST00000378567.8 | protein_coding | 4/17 | INFO_REALIGN_3_PRIME | chr1 | TogoVar | ||||||
PRPF31_chr19_54110754_54136713 | 54133730 | T | TCCTCTCT others(792): Show |
downstream_gene_variant | MODIFIER | HG02004.hp2 | a0001 | a0001c0002 | a0001c0002t0001 | a0001c0002t0001g0006 | 1 | 223 | 0.0045 | 799 | c.*22 others(810): Show |
PRPF31 | ENSG00000105618.14 | transcript | ENST00000321030.9 | protein_coding | 2018 | chr19 | TogoVar | |||||||
SCARA5_chr8_27864883_27997673 | 27918978 | A | AGGAGGAG others(792): Show |
intron_variant | MODIFIER | HG00621.hp2 | a0001 | a0001c0001 | a0001c0001t0001 | a0001c0001t0001g0278 | 1 | 217 | 0.0046 | 799 | c.916 others(816): Show |
SCARA5 | ENSG00000168079.17 | transcript | ENST00000354914.8 | protein_coding | 4/8 | chr8 | TogoVar | |||||||
SEL1L2_chr20_13844247_13995614 | 13934343 | C | CATATATA others(792): Show |
intron_variant | MODIFIER | HG02027.hp2 | a0001 | a0001c0001 | a0001c0001t0001 | a0001c0001t0001g0114 | 1 | 230 | 0.0043 | 799 | c.115 others(816): Show |
SEL1L2 | ENSG00000101251.13 | transcript | ENST00000284951.10 | protein_coding | 2/19 | chr20 | TogoVar | |||||||
SEL1L2_chr20_13844247_13995614 | 13934358 | C | CATATATA others(792): Show |
intron_variant | MODIFIER | NA19083.hp1 | a0001 | a0001c0001 | a0001c0001t0002 | a0001c0001t0002g0009 | 1 | 166 | 0.0060 | 799 | c.115 others(816): Show |
SEL1L2 | ENSG00000101251.13 | transcript | ENST00000284951.10 | protein_coding | 2/19 | chr20 | TogoVar | |||||||
SEPTIN9_chr17_77276499_77505593 | 77356681 | C | CCCCCTCC others(792): Show |
intron_variant | MODIFIER | HG02056.hp2 NA18973.hp2 |
a0001 | a0001c0001 | a0001c0001t0001 | a0001c0001t0001g0065 a0001c0001t0001g0093 |
2 | 118 | 0.0169 | 799 | c.77- others(816): Show |
SEPTIN9 | ENSG00000184640.20 | transcript | ENST00000427177.6 | protein_coding | 2/11 | INFO_REALIGN_3_PRIME | chr17 | TogoVar | ||||||
SEPTIN9_chr17_77314518_77505593 | 77356681 | C | CCCCCTCC others(792): Show |
intron_variant | MODIFIER | HG02056.hp1 NA18973.hp1 |
a0001 | a0001c0001 | a0001c0001t0001 | a0001c0001t0001g0111 a0001c0001t0001g0113 |
2 | 122 | 0.0164 | 799 | c.22+ others(816): Show |
SEPTIN9 | ENSG00000184640.20 | transcript | ENST00000329047.13 | protein_coding | 1/10 | INFO_REALIGN_3_PRIME | chr17 | TogoVar | ||||||
SLC6A3_chr5_1387794_1450440 | 1414424 | A | AGAAGGCA others(792): Show |
intron_variant | MODIFIER | HG02071.hp2 | a0001 | a0001c0004 | a0001c0004t0001 | a0001c0004t0001g0253 | 1 | 208 | 0.0048 | 799 | c.115 others(816): Show |
SLC6A3 | ENSG00000142319.18 | transcript | ENST00000270349.12 | protein_coding | 8/14 | chr5 | TogoVar | |||||||
STK24_chr13_98440185_98582107 | 98473274 | G | GGAGAGGA others(792): Show |
intron_variant | MODIFIER | HG00558.hp1 | a0001 | a0001c0001 | a0001c0001t0005 | a0001c0001t0005g0289 | 1 | 3 | 0.3333 | 799 | c.597 others(816): Show |
STK24 | ENSG00000102572.15 | transcript | ENST00000539966.6 | protein_coding | 5/10 | chr13 | TogoVar | |||||||
TBC1D22A_chr22_46757650_47180693 | 46878326 | A | AGAGAGAA others(792): Show |
intron_variant | MODIFIER | HG02109.hp2 | a0001 | a0001c0001 | a0001c0001t0004 | a0001c0001t0004g0070 | 1 | 31 | 0.0323 | 799 | c.638 others(814): Show |
TBC1D22A | ENSG00000054611.14 | transcript | ENST00000337137.9 | protein_coding | 4/12 | INFO_REALIGN_3_PRIME | chr22 | TogoVar | ||||||
TERT_chr5_1248167_1300068 | 1291223 | G | GACGGCAC others(792): Show |
intron_variant | MODIFIER | HG02165.hp2 | a0001 | a0001c0002 | a0001c0002t0001 | a0001c0002t0001g0048 | 1 | 257 | 0.0039 | 799 | c.157 others(818): Show |
TERT | ENSG00000164362.21 | transcript | ENST00000310581.10 | protein_coding | 2/15 | chr5 | TogoVar | |||||||
TERT_chr5_1248167_1300068 | 1291223 | G | GACGGCGC others(792): Show |
intron_variant | MODIFIER | HG04184.hp1 | a0001 | a0001c0002 | a0001c0002t0001 | a0001c0002t0001g0019 | 1 | 257 | 0.0039 | 799 | c.157 others(818): Show |
TERT | ENSG00000164362.21 | transcript | ENST00000310581.10 | protein_coding | 2/15 | chr5 | TogoVar | |||||||
TERT_chr5_1248167_1300068 | 1291227 | C | CGCCTCAC others(792): Show |
intron_variant | MODIFIER | HG00280.hp2 HG03927.hp1 HG04228.hp1 others(1): Show |
a0001 | a0001c0002a0001c0004 | a0001c0002t0001a0001c0004t0001 | a0001c0002t0001g0039 a0001c0004t0001g0023 a0001c0004t0001g0049 others(1): Show |
4 | 303 | 0.0132 | 799 | c.157 others(818): Show |
TERT | ENSG00000164362.21 | transcript | ENST00000310581.10 | protein_coding | 2/15 | chr5 | TogoVar | |||||||
TERT_chr5_1248167_1300068 | 1291227 | C | CGCCTCAC others(792): Show |
intron_variant | MODIFIER | HG00741.hp2 HG02148.hp2 |
a0001 | a0001c0002a0001c0004 | a0001c0002t0001a0001c0004t0001 | a0001c0002t0001g0059 a0001c0004t0001g0043 |
2 | 301 | 0.0066 | 799 | c.157 others(818): Show |
TERT | ENSG00000164362.21 | transcript | ENST00000310581.10 | protein_coding | 2/15 | chr5 | TogoVar | |||||||
TERT_chr5_1248167_1300068 | 1291227 | C | CGCCTCAC others(792): Show |
intron_variant | MODIFIER | HG00408.hp2 HG02523.hp2 HG02622.hp2 others(2): Show |
a0001 | a0001c0001a0001c0002 | a0001c0001t0001a0001c0002t0001 | a0001c0001t0001g0118 a0001c0002t0001g0010 a0001c0002t0001g0016 others(2): Show |
5 | 304 | 0.0164 | 799 | c.157 others(818): Show |
TERT | ENSG00000164362.21 | transcript | ENST00000310581.10 | protein_coding | 2/15 | chr5 | TogoVar | |||||||
TMEM132C_chr12_128262170_128712911 | 128292999 | A | AAAATGTG others(792): Show |
intron_variant | MODIFIER | HG02723.hp2 | a0003 | a0003c0010 | a0003c0010t0003 | a0003c0010t0003g0067 | 1 | 165 | 0.0061 | 799 | c.85+ others(816): Show |
TMEM132C | ENSG00000181234.10 | transcript | ENST00000435159.3 | protein_coding | 1/8 | INFO_REALIGN_3_PRIME | chr12 | TogoVar | ||||||
TMEM132C_chr12_128262170_128712911 | 128292999 | A | AAAATGTG others(792): Show |
intron_variant | MODIFIER | HG02809.hp2 HG03195.hp2 |
a0006a0016 | a0006c0017a0016c0068 | a0006c0017t0003a0016c0068t0003 | a0006c0017t0003g0086 a0016c0068t0003g0085 |
2 | 166 | 0.0120 | 799 | c.85+ others(816): Show |
TMEM132C | ENSG00000181234.10 | transcript | ENST00000435159.3 | protein_coding | 1/8 | INFO_REALIGN_3_PRIME | chr12 | TogoVar | ||||||
TWIST2_chr2_238843085_238915534 | 238871147 | A | ACACACAC others(792): Show |
intron_variant | MODIFIER | HG02155.hp2 | a0001 | a0001c0001 | a0001c0001t0001 | a0001c0001t0001g0268 | 1 | 35 | 0.0286 | 799 | c.*35 others(818): Show |
TWIST2 | ENSG00000233608.5 | transcript | ENST00000612363.2 | protein_coding | 1/1 | INFO_REALIGN_3_PRIME | chr2 | TogoVar | ||||||
VPS53_chr17_503668_719839 | 619666 | G | GTGTACCA others(792): Show |
intron_variant | MODIFIER | NA18984.hp2 NA19064.hp2 |
a0001 | a0001c0002 | a0001c0002t0068a0001c0002t0074 | a0001c0002t0068g0093 a0001c0002t0074g0095 |
2 | 82 | 0.0244 | 799 | c.111 others(818): Show |
VPS53 | ENSG00000141252.21 | transcript | ENST00000437048.7 | protein_coding | 11/21 | chr17 | TogoVar | |||||||
WDR25_chr14_100371485_100535303 | 100526932 | A | ATCACCAC others(792): Show |
intron_variant | MODIFIER | NA18962.hp2 | a0001 | a0001c0003 | a0001c0003t0001 | a0001c0003t0001g0126 | 1 | 21 | 0.0476 | 799 | c.127 others(816): Show |
WDR25 | ENSG00000176473.14 | transcript | ENST00000402312.8 | protein_coding | 5/6 | INFO_REALIGN_3_PRIME | chr14 | TogoVar | ||||||
WWP2_chr16_69757332_69946739 | 69820685 | C | CATCTTAG others(792): Show |
intron_variant | MODIFIER | HG01069.hp1 | a0001 | a0001c0002 | a0001c0002t0003 | a0001c0002t0003g0252 | 1 | 312 | 0.0032 | 799 | c.341 others(818): Show |
WWP2 | ENSG00000198373.13 | transcript | ENST00000359154.7 | protein_coding | 4/23 | chr16 | TogoVar | |||||||
YBEY_chr21_46281342_46302751 | 46294398 | A | ACAGCCAC others(792): Show |
intron_variant | MODIFIER | NA18990.hp1 | a0001 | a0001c0001 | a0001c0001t0001 | a0001c0001t0001g0050 | 1 | 287 | 0.0035 | 799 | c.340 others(816): Show |
YBEY | ENSG00000182362.14 | transcript | ENST00000397701.9 | protein_coding | 3/4 | INFO_REALIGN_3_PRIME | chr21 | TogoVar | ||||||
ZBTB34_chr9_126855639_126890878 | 126876163 | C | CTTCCCCC others(792): Show |
intron_variant | MODIFIER | HG02148.hp2 | a0001 | a0001c0001 | a0001c0001t0001 | a0001c0001t0001g0127 | 1 | 234 | 0.0043 | 799 | c.-10 others(816): Show |
ZBTB34 | ENSG00000177125.6 | transcript | ENST00000319119.5 | protein_coding | 1/1 | INFO_REALIGN_3_PRIME | chr9 | TogoVar |